<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:43:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329524" ref_strand="+" ref_description="SGN-E329524 [cTOD-11-I7]">
      <seq>taaaagagagaaggaactaattgagaggaccggaagtgctaatgtgccgcagatatttctgaatgataagttgttaggtggactggtggcgttgaactcgctacggaatagcgggatgttggagaagaaatttgcagaaatgttggccggaaaatgcccggaggatgcaccggcaccaccggtttacggtttcgacgacgattacgaggagcaaaacgacgaaatggtagatattgtaagagtattgaggcaaaagcttccgatacaggacagaatcatgaggatgaaaatagtaaaaaattgcttctccggcggtgagcttgtggaggttctgatccaccacttggactgcggcaggaaaaaggctgtggaaattgggaagaacctggcgagaaggcattttattcaccaagtctttggagaaaatgaatttgaagatggaaaacacttctatagattccttgaacatgagccttttgttcccaaatgctataattttcgaggatccacaaatgacaatgaacccaaggacgttgctgtgttaggtcaaaagcttggtaaaataatgtctgcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="13642" stop="8313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13342" g_stop="12979" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12978" i_stop="8912" i_length="4067">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8911" g_stop="8856" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="420" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8855" i_stop="8771" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8770" g_stop="8613" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="578" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E329524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13342" e_stop="12979"/>
          <exon e_start="8911" e_stop="8856"/>
          <exon e_start="8770" e_stop="8613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAGAGAAGGAACTAATTGAGAGGACCGGAAGTGCTAATGTGCCGCAGATATTTCTGAATGATAAGTTGTTAGGTGGACTGGTGGCGTTGAACTCGCTACGGAATAGCGGGATGTTGGAGAAGAAATTTGCAGAAATGTTGGCCGGAAAATGCCCGGAGGATGCACCGGCACCACCGGTTTACGGTTTCGACGACGATTACGAGGAGCAAAACGACGAAATGGTAGATATTGTAAGAGTATTGAGGCAAAAGCTTCCGATACAGGACAGAATCATGAGGATGAAAATAGTAAAAAATTGCTTCTCCGGCGGTGAGCTTGTGGAGGTTCTGATCCACCACTTGGACTGCGGCAGGAAAAAGGTATGCATCTCGCTTCTTTCACATTATTACTAAATTATATTATAGAGTATTAATTCAATATTGCAATAATCAAATTTAGATATTTAATTTTCTATGAAATTATAATATATGATAAAAATATAAATGTTCGTTATTCAAAATGAAACTATAGGCACCTAACGTTCACAATAAATTGCATTATTATCTACTAATCCTAATAGGAGACGCAAGCACGAAAATGAACGCTAACATTTTTAGTATAGAATTGACGTTTGATCAGATTCTACAGTGTTTTAGGATTTTGAGGTATTAATGGAACGTGTAAAGGTATTAATGGAAATTTATATCCACTTTATTATAGTATATTATAAGTACTATATTTTTAAAAGTATTGTTCACTTAGCCCAAAAAGAATAATAAGATGGTACGGTGTGCAAGGGTCAACTAAGCTAATTTCTTATGTTTAAGTACAAATAATTTGGTTTTCGATATAAAATTTTGAATGTTTGGTAACACGTACGCACAAATTAAAATAATTTTGTAACAACAAATTATTTTAGGCAAAGAAAAATAGTTTGACCTTTTAAATGCATGTAGTTGTGCAGTGGTGCCAAACAATGTTCGACATAGAAATATTTGGGACAAGATATTCCTTACTTACAAAATGTAAGTTCCGTATCATACATATTGTCCAATAAATGTGAGACCGATTATAATTTACTGCATAAACAGAAGTATACTCCTGATAACTTACTAATAGGAGAATATATACGTCAATGGTTAGAGTATAGAGTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGATCAAACTAACTTAAAAGCTGGTTTTTGACTTATTTAACTGTTTGACAATACTCAAAATAACTTATTTTAAGTTAAACAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTTTTAACTTATAAGTTGTTTTAAGTTGACCATATTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAGTTACCCATATAACTCTAACATCTCTTTCTTCTATTTTTCTCTTTTCACGTTTTGCATAACAACTTCAGCACTTTTATCCAAACGCATAACTGTTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAATCCCATCCAAACGGGCCCTTAGTAGATAGTTTTACGGTATGATTTTTCTTATTAGTGGTATTGGTATTTTCTCACTCTCACTTTATTATTATTTCTTATTATTTTTTCTTTGATGATCATATTATTTGTTGGTGTTACTTGAAATTCTATCCTCTTTATTTTGTTATGATTTATTTTAAGCTAAGTGTCTATCGAAAAGGAAAGGTCTATTAAATGGTACGATTTAGTTATTCAATTTGGTAGGAATACTTCTAAGTTTTGAAAATTAGATAGAAATGACAAATAGTATAAGTTAGGTTAAAAGATATTTTTCTCAATATTTCCAAACTTTTAACTTTTACACTTTAGTCCAACAACGTAGTTGTCCGAGAACTTCAATAGTTGTCCAGACAATTTGGACAACTACGAAAAGCTATTTTGGACAACTACGAAAAGATATTTTTACTCCTTCTACTAATATTAAAAATAACAAAAATAAATAAATCAAGAAGACCCACTTGTCCTATTTTTTTAATTGAAAACTTCCGAGACATTTTAAGCTTATTTGTAGTAAAAGTAAGATTGCGCATAAACAACTATCTTTTAACTCTTTATTTATGGAGTTTTGCAAATAGTCAATTTGATTTTGAACCCTCTCAACTAGTTCAAATTCACGTTATGAAATCCTACTTTAAAACAGTCTTTATTAAAGATGATTTCATTTTTGAGGTCCAAATTAAAGATGTCTTTTACCCACCACAATTGTTGGTGATTTTTGAAATTAAGTCATACTATGTACTAGTAGCATGAAATGGGTTTAAACTTTTAAAGTAGATAGGCCATTGTTCAGGCTTTGGTCACAGTCAAATGAATAAAGTCAAGTAGTTTCTACCCGAACCACACGTCTATCTTGGGCTCACTTAGAACTCAGAAAAGTTCCTCTATCCAACGGTCCCGTCAATCTCGTGCGCTGATAATGAGTATATTACCCACAGTCCCACACGCTTTTGAAATTAGTGCAATCAATTAACTTGGAGATTATTAATGAAGTCATTATATTTCTTGGGTCAATTTGATAAGTTATTTGGAAATTGTACACTTTAAATATTAGCCTTAGCCTCGTCATTATGATAGATGCGTGAATTGGTCTTTTCTCCCACGTGCTGAAAGTTAGTCACTGTTTCATTTCTTCATAAAAATAAAATACCCCCTTGGATTATTTGATCTTTTGATAGGAACATTGGATCTTGTATTCATTTTTCTCTTTATAATAATTGCAAAGGTGAGGAAATGATGAGAAGGGTTAAAAGAAAATCAACGTGAAACAAATAGGAGAGTTTTTTTTCCCGGAGTCATTTGGATATAGTGTATAAAAATAATATTAAATAAAGCATGTTATTAGGGTTATATTAGTTATGCTTGCATTAGTTATACAATAAAAAATATTTCTTATGCATAGTTTGATTTGATGTATTAAAAAAAAATATATTGTATAAAAATATTTATTACAAAAGTATCCTCTAAAATTATGATTGAGAAAAAGTAAAAATACTTTTGAGGGGTAATTGAGTCTTTTAGCTAATGCATATATTAAATTCTTTTACATTACTAATATCTAAAATCGATGATATTAGTATTTAGCAATACACTCCTCAATACATATAACATGAAAAAATGTATCGCATTAGATCATATTAATAAACAAAGCTGATGTAAATATTATGTTATTAATACATTCTACCGAAGGCCTATTAAGATACTTCTCGTTTGCTACTATAAGCTCTATTATTCAAATCCAATCCATTCACTGGGGTCCGAGGGATAACGTTTTTCGTCCTTTCCTTTTCTTTCCTTTTTCCCATGAAAAAGCGACAGGCTTTTACGTACCAAAAAAGAAAAAAGTGACAAAGCTTCCTTTTTTTTTCTTCTCTTGTTTCCAAACACATGACTAGTTTTCATAAAACAAAAGAGTTTAAAAACATGTGTTACTTTCAAGAATGAATATTTTTTGGAGGATCAAGTAGTCTGTCCTAACGGCTATACCAATGAAGATAGAATAGATCATATGAGAAATGGAGCTCAAATTCTAATAGATAAAAAAATGCTAGGTTGTTCTTCCCATTATTTTTAGCGGGGCGGTAGCATGTACATTCTTTTGATTACCCTAAAGCCCAAGGTCAATGAACATGGAAGGAAATATGGTTTAGTGGAGGTGCGCGCAATGGTTATTGTAAAAATGAACTAGACATTTTTCTTATGGCATTTCTTTGTTCTCATTTATTTTTTGCTTCAAATACAATCTTTCTTCCATGATCTCCATAAAGGAACTTTCAGGATATTATTTCAGTTGATGTGCGCGCAAGTTAGTTACTATCATTTATTAAAAAGGAATGAATTTTTTCTCATGACATTTATTGTACCATTACTGCTTCAAGGTCAATTGTCCCTCTATATATGATCTTCAGTAGAGTAACTTTCTTGTGGATACATTGGATTGGCCTGAATTTCTGATTGTTAGCGGATCTAATTCTGGAGTTTTAGCATCTGTGTAGCATGGCCTTGAATCCAGTCTGCATGAGTTACTCATTACCTGTAGTTTGTTGAAAAAAGAAAAAAAAAAGGGTAACACAATCTTTTGGTATTTCTCAAACTTTATTTTCTAACTAAACATAAAAGTTATTTCAGATTCAATCATAGCATAGTGCTTAAGTAAGTATAGCAAAGTGGAAACTTGGAAGTATAATGCAAAAATGAATTCTAAAAGCTTATAACATTAGATACTGAGACGTGTCCATGCAACACTACCGTTGTTTTGCAATGACCTCATTAATTAGCAAAGCCATTGATTTTTAAGAATCATTAAAAATTTTATCAATGATACTGCATGGACTTATATTTCAAAGTAATACCTATTTGATATCTAACACAGGCTGTGGAAATTGGGAAGAACCTGGCGAGAAGGCATTTTATTCACCAAGTCTTTGGGTAAGAACCCGAAAAGCATTTTATGACTGCTGCCCATCAGTGTAGATTTTATTCTATTGACAAATTACTCTACTGTTTATGCCAGAGAAAATGAATTTGAAGATGGAAAACACTTCTATAGATTCCTTGAACATGAGCCTTTTGTTCCCAAATGCTATAATTTTCGAGGATCCACAAATGACAATGAACCCAAGGACGTTGCTGTGTTAGGTCAAAGGCTTGGTAAAATAATGTCTGCATTAC</genome_strand>
        <mrna_strand>TAAAAGAGAGAAGGAACTAATTGAGAGGACCGGAAGTGCTAATGTGCCGCAGATATTTCTGAATGATAAGTTGTTAGGTGGACTGGTGGCGTTGAACTCGCTACGGAATAGCGGGATGTTGGAGAAGAAATTTGCAGAAATGTTGGCCGGAAAATGCCCGGAGGATGCACCGGCACCACCGGTTTACGGTTTCGACGACGATTACGAGGAGCAAAACGACGAAATGGTAGATATTGTAAGAGTATTGAGGCAAAAGCTTCCGATACAGGACAGAATCATGAGGATGAAAATAGTAAAAAATTGCTTCTCCGGCGGTGAGCTTGTGGAGGTTCTGATCCACCACTTGGACTGCGGCAGGAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAAATTGGGAAGAACCTGGCGAGAAGGCATTTTATTCACCAAGTCTTTGG.....................................................................................AGAAAATGAATTTGAAGATGGAAAACACTTCTATAGATTCCTTGAACATGAGCCTTTTGTTCCCAAATGCTATAATTTTCGAGGATCCACAAATGACAATGAACCCAAGGACGTTGCTGTGTTAGGTCAAAAGCTTGGTAAAATAATGTCTGCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="20454" stop="19306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20083" g_stop="19606" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20083" e_stop="19606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAAAGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCTCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAACAAACGTGCCATCATCTTCAACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="20455" stop="19549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20084" g_stop="19847" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20084" e_stop="19847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAAAGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="20842" stop="19843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20542" g_stop="20141" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20542" e_stop="20141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTAGGTGGAGGTAGGTTATGGTTTTTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTAATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGTATGAATGTAATTATATAATTGTGA-T-TATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATGGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="20301" stop="21313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20601" g_stop="21055" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20601" e_stop="21055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGTAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCTAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCGAGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTTGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="20302" stop="21367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20602" g_stop="21075" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20602" e_stop="21075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGTAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCTAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCGAGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTTGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGGGTTCCGT</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGT-GCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212117" ref_strand="+" ref_description="SGN-E212117 [cLEC-75-B19]">
      <seq>ggagactgaagaatgggtaatgtcttaccttttggaatttacttcagaagatatcagttttgaagaaacaaattgaaaatttctgctctacacttttttttcagctgctcacaatgttctcttcattgttctgaaattttaaatagtttttgtcttgtcaaattaaaaattactgttttgtgcagtgggttcaatgtgataagtgtgaagcttggcaacatcagatttgtgcattgttcaatggtaggaggaatgatggtgggcaagccgagtatacctgtcccaattgctatattatagaggttgaaagaggtgagcgtaagcccttaccacagagtgctgttcttggagccaaagatctgcctcgcacatgtctcagtgatcatattgaggttcgattagatagggttttgaaggatgatagacaaaaaaagagcagaacgtgaaggaaaaagttatgatgaggttcccggtgctgaagggcttgttgtaagagttgtgtcatcagtagacaaaaagttagaagtgaaatcaaggtttcttgaggtctttcaagaagagaactatccgctggagttcccatataaatcaaaggtgttattgttatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="32855" stop="34724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33155" g_stop="33618" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33619" i_stop="34293" i_length="675">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34294" g_stop="34422" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="594" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E212117" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33155" e_stop="33618"/>
          <exon e_start="34294" e_stop="34422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACTGAAGAATGGGTAATGTCTTACCTTTTGGAATTTACTTCAGAAGATATCAGTTTTGAAGAAACAAATTGAAAATTTCTGCTCTACACTTTTTTTTCAGCTGCTCACAATGTTCTCTTCATTGTTCTGAAATTTTAAATAGTTTTTGTCTTGTCAAATTAAAAATTACTGTTTTGTGCAGTGGGTTCAATGTGATAAGTGTGAAGCTTGGCAACATCAGATTTGTGCATTGTTCAATGGTAGGAGGAATGATGGTGGGCAAGCCGAGTATACCTGTCCCAATTGCTATATTATAGAGGTTGAAAGAGGTGAGCGTAAGCCCTTACCACAGAGTGCTGTTCTTGGAGCCAAAGATCTGCCTCGCACATGTCTCAGTGATCATATTGAGGTTCGATTAGATAGGGTTTTGAAGGATGATAGAC-AAAAAAGAGCAGAACGTGAAGGAAAAAGTTATGATGAGGTAAGTGAATTGTCTTGCGTTTTGATCACTACAGCCATCATGTTAAAGTTTCGTTGTTTAACATAAGAGAATGATACATAAATGGGATATAGTTTTGATTGATAGTCATCATCAAGGCAGTCCCCTCCCCAATACAATAGATTCTAAAACAGCTCTATGTCATGCTATGATAAATATTGGCATTCTAAACATCATAAAACTCACACTGGTCTTTATGGTGGATGCTGCATTCACTTCTTTGACCAGAATAGTTGCTTATGCTCAAGTCCAGACCGTGGAACAGCTTCAGCCTTCTAAAGAAAAGTGACATAAATAATATATCTGCTCTTCCTTTTTCAGAAAAAAAGAGTAAAATATCTTGTCCTCACATTTTGCAGTTTTATGTTTTCCTTTGGAGAGTTGGATAACCTCATGTAACATTCATTTTAGAGAATATTAAGAACTGTGTCAAATATTAGCTTTCATTCATATCCTGGGTAGGGATATAAATTAGCTTGTGGATTGCACCGTCTCAATTGCTTAACAATTTTCCTAATAAATATAGAAATTTGTTTCCTCTTGGAAAAGATGTCTTGTTCGGGTGTTTCTTCCAAGTTCTGTTTATTGATATGTTAGTCAGCAATGGTTCACTTATGTATGTTTAGTTAACCTTCTGCATATGTTTTTTATTTCCAGGTTCCCGGTGCTGAAGGGCTTGTTGTAAGAGTTGTGTCATCAGTAGACAAAAAGTTAGAAGTGAAATCAAGGTTTCTTGAGGTCTTTCAAGAAGAGAACTATCCGCTGGAGTTCCCATATAAATCAAAG</genome_strand>
        <mrna_strand>GGAGACTGAAGAATGGGTAATGTCTTACCTTTTGGAATTTACTTCAGAAGATATCAGTTTTGAAGAAACAAATTGAAAATTTCTGCTCTACACTTTTTTTTCAGCTGCTCACAATGTTCTCTTCATTGTTCTGAAATTTTAAATAGTTTTTGTCTTGTCAAATTAAAAATTACTGTTTTGTGCAGTGGGTTCAATGTGATAAGTGTGAAGCTTGGCAACATCAGATTTGTGCATTGTTCAATGGTAGGAGGAATGATGGTGGGCAAGCCGAGTATACCTGTCCCAATTGCTATATTATAGAGGTTGAAAGAGGTGAGCGTAAGCCCTTACCACAGAGTGCTGTTCTTGGAGCCAAAGATCTGCCTCGCACATGTCTCAGTGATCATATTGAGGTTCGATTAGATAGGGTTTTGAAGGATGATAGACAAAAAAAGAGCAGAACGTGAAGGAAAAAGTTATGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGTGCTGAAGGGCTTGTTGTAAGAGTTGTGTCATCAGTAGACAAAAAGTTAGAAGTGAAATCAAGGTTTCTTGAGGTCTTTCAAGAAGAGAACTATCCGCTGGAGTTCCCATATAAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244823" ref_strand="+" ref_description="SGN-E244823 [cLEF-2-M17]">
      <seq>atttggatctgaatgcgcacaaccaaatcatcgtcgtgtttatctctcgtatctagattctgtcaaatatttcaggcctgagatcaaagctgcatctggcgaggctcttcgcacttatgtgtaccatgaaattttgattggatatttagaatattgcaaaaagcgtggtttctcaagttgctatatatgggcttgtcctccactgaagggtgaagattatattttatattgccacccagaaatccaaaaaaccccaaaatctgacaaactcagaagagtggtattaatcaaatgttacgaaaagctgggaaaggaaaaagattgttgtggatcttacaaatttatttgaccatttctttaccaccaccggcgaatgtaaagctaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="35395" stop="36622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35695" g_stop="35830" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35831" i_stop="35921" i_length="91">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35922" g_stop="36064" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="280" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36065" i_stop="36218" i_length="154">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36219" g_stop="36324" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="389" r_length="109" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E244823" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35695" e_stop="35830"/>
          <exon e_start="35922" e_stop="36064"/>
          <exon e_start="36219" e_stop="36324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGATCTGAATGCGCACAACCAAATCATCGTCGTGTTTATCTCTCGTATCTAGATTCTGTCAAATATTTCAGGCCTGAGATCAAAGCTGCATCTGGCGAGGCTCTTCGCACTTATGTGTACCATGAAATTTTGGTGATCTTCTTCTGCCATTATTTTTTTTGTTGATTTCTATATCTGTATTACAGATTTTTAGAGTTCTCTTATTATATTTTGATCATTCCAGATTGGATATTTAGAATATTGCAAAAAGCGTGGTTTCTCAAGTTGCTATATATGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATATTATATTGCCACCCAGAAATCCAGAAAACCCCAAAATCTGACAAACTCAG-AGAGTGGTGAGCTTAATAATTTTTTGACGTGTTTTTTTCTTAGAATGTGTCCTTCAGTATTAAATCCTTGGGTATCTGTTTTGATGAACTTCTAATATGGTGAGTTAATGTTGTTCTTTTGGGGTATATGTTCTTGACTAGTTCACTTTCTTATATGCAGGTATTTATC-AATGTTACGAAAAGCTGTG-AAGG-AAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATC</genome_strand>
        <mrna_strand>ATTTGGATCTGAATGCGCACAACCAAATCATCGTCGTGTTTATCTCTCGTATCTAGATTCTGTCAAATATTTCAGGCCTGAGATCAAAGCTGCATCTGGCGAGGCTCTTCGCACTTATGTGTACCATGAAATTTTG...........................................................................................ATTGGATATTTAGAATATTGCAAAAAGCGTGGTTTCTCAAGTTGCTATATATGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATTTTATATTGCCACCCAGAAATCCAAAAAACCCCAAAATCTGACAAACTCAGAAGAGTG..........................................................................................................................................................GTATTAATCAAATGTTACGAAAAGCTGGGAAAGGAAAAAGATTGTTGTGGATCTTACAAATTTATTTGACCATTTCTTTACCACCACCGGCGAATGTAAAGCTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726855" ref_strand="+" ref_description="SGN-E726855 [LA13AB03]">
      <seq>ctgaaatccagaaaaccccaaaatctgacaaactcagagagtggtatttatcaatgttacgaaaagctgtgaaggaaaagattgttgtggatctcacaaatttatttgaccatttcttcaccaccacaggcgaatgtaaagctaaaatcactgcagctcgcctgccctattttgatggagactattggcctggtgcagcagaggatatgatttttcaacttcaacaagaagaagatgggaggaaacatcataagaagggggctatgaagaagaccatatcaaaaagagctcttaaagcatctggtcaatccgatctttctggaaatgcaactaaggatatacttctaatgcacaaacttggtgaaactatttctccaatgaaggaagattttattatggtccatttgcagcatgcatgtactcattgctgtattctgatggtatccggtaatcgttgggtatgcaaacaatgcaagaactttcagctttgcgacaagtgctatgaagttgagcaaaaactcgaagccagagaaaggcatcctctctatcacaaggacattcatatgctttatccaactgaaattgatgatgtacctgctgatacaaaggatccagatgaaattcttgagagtgagttttttgatacaaggcaggcatttttgagcctttgtcaaggaaaccattaccaatatgataccctgcggcgtgctaaacattcctcaatgatggtcctttaccaccttcataatcccactgcaccagcttttgtgacaacttgcaatatttgtcatcttgacatagaaacaggtcaaggttggcggtgtgaaacttgtcctgattatgatgtatgtaatgcttgctatcagaaagatggtggagttgatcatcctcacaagttaactcatcacccatccattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="35722" stop="40997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36022" g_stop="36064" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36065" i_stop="36218" i_length="154">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36219" g_stop="36531" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="356" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36532" i_stop="36927" i_length="396">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36928" g_stop="37067" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="496" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40195" g_stop="40273" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="575" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40352" g_stop="40697" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="921" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E726855" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36022" e_stop="36064"/>
          <exon e_start="36219" e_stop="36531"/>
          <exon e_start="36928" e_stop="37067"/>
          <exon e_start="40195" e_stop="40273"/>
          <exon e_start="40352" e_stop="40697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCCAGAAAACCCCAAAATCTGACAAACTCAGAGAGTGGTGAGCTTAATAATTTTTTGACGTGTTTTTTTCTTAGAATGTGTCCTTCAGTATTAAATCCTTGGGTATCTGTTTTGATGAACTTCTAATATGGTGAGTTAATGTTGTTCTTTTGGGGTATATGTTCTTGACTAGTTCACTTTCTTATATGCAGGTATTTATCAATGTTACGAAAAGCTGTGAAGGAAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAAGTAATTTTATCCTCTAGACATCTTTATTAATCTGATCATTCTGGAAATGCATCTAATTATCTACTTCTAATGCACAAAGTAATTTTAGCGTCTAAACACTTTATTTACTCCTAACCTTCTTCTACTTCCTCTATGAATGTTTGTTGACTGATTTTGCTGTTAATATGTGTTGTGCATTCATCAAAAGATACATCGCGGTTTGTGGCTTGCAGCCTTTTGAACTATTTAAACTATTTAGTATTTTTCCTCTGTAAATACTCCTCTGGAATATATTGCCACTCTCTTATCAAGCACTGACTATTTGTAAAATTATTTTGTTTAAAGCTGATGGACTATCAACCTCCTCCTTTTATGTATACATTCTTTTGTGTCCTCACAAATTTCTACTTGTCGCAGCTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAAGTATGACTCTTGCCTCTCTCATTTCGTTTATTAGAGTTGTAAAAACTTTTCTAATAAGAGTCATGCTTATTACACACTTGAAAGTGAATCAACTACAAGTAATCTTCTTCTCATCTGAAATGAGAACAGAGAAAAAACAAGCTAGACAAAAAAGTACTCAGGATTGTCTTTTTTCTTGTTTAACAAAGTGTCGTTTTCTGTCTTCTGATTGATTATCCAAAGGGACTTAATTTTTAAGTGACCACTAAGCTATATATCCATGAAACAAAATCGCCAAAACCTTGGGGTTCATATTTTTCTTTGTAATGTTAAAAGGCACCCTTTGAGTGCTGAAGTAAGTTTAACAAGGGTAGAACACACAATACAAATGATAGTCTTCTCAAAGCAGGACCTTACTAGACCACTCATTCTTGGTCATGAACTTGCTAATCTTTGCAATATAGTTTCACATTTGTGCATGCTGCGCATTGCACAATCAGCTGATGCCTAATAGGTGATTTTCCATACATTTATTGGAAAAACTAGCGACATCTAAACTCCAAACAGCTGTTCCCATGTACGTATAACGGAGGTAGGTTGACAATTAGCAGGGGAGGACTACATATAAAAAAAGAAATGAAACTGTAAAAAAAAATTATTGCTGAGTGCAAGTCAGATTAGATATATTCTCATCTGGTAAAATTTGTGAGTAACACATACAAGATAAAATGAGGGAAGGTCATCTAAGATGGTTTTTCCATCTCATACATAGGTATTATGATGATTGAAGGTGTTAAAAAGGAGATGAGGTTGATCTAAGGTTCACATGGAAAATGGGATGGAAGTAAAGATCTATATAGACGATATTTACCAAGTGATGTTAATGTTTAGTCGTTTGTACACTTACCTCTGGTTCGGTATCTCTCAAGAGTAATGTTAGTTGGTTAGAAGTGAATGGGGGCCTGTTTTATGTCTTCACTTCCGCATGCTCCTGGTAGCATGATACTTAGACCAGGAAGATTTCTACGGAACTTCCTATGGAGTACAACAGAGGATATAAAGAAGTTCCATTTTGTGAACCGGAGAGTTGTTACATCTCCACAGGAATGGGGGTAAAGTCGGAGTAAAAAATCTGAATGTTTTCAACAGAGTTCTGCCAGAGAAGTGGATTTGATATGGGATGGAGGGTGGTTGCTGAAAAATATGGTATGATGGAAGGGGGGTAGAGGACTAGAAACATCTCAGTCCCGTTTGGGTGCAACTTATGGATGGGTATATTATGAAAGGATGAGAAGAATCCAGTGGAATATTTTCATTTAGGGTGGGAAATGGAAGAAGGGTTTTATCTTGGGAGCACATGTAGCATGGAGAATTGATTAAGGGAAGTGCTTCCCAACATATATATATGTAGTTTCTTGGAAAAGAGAGACGACTATCCAACAAGTTCGTATGATTCATGAGGGAAGTTCACTGGAATTTGAGATTTAGGAAGAACCCACTGGACTGGGAGATCAAGGAATATCTAGGTTGAACTTTTGTACAGGGAGAACACACCACATGTTGCATTCGAGGTATGAAGATGGCAAGAGAATAGAGATGATTTGTCCATTGTCAAATCTTATTATGAGAGGTTACTACGGAGAGAGAGGGATCAAACATTTCCTACTCGACTTCCCAGGGTGCATAAGAAGCTTTACTTCTGTGTGGTTGGTAACAAGGGAAGTGATTTTGACGACATAAAATCTAAGGAAGAGGAAGATCACCTATGTTTTGGTTGCTTTATGTGCAGAGGTTCGAGCAGAGAGGTTGATCATCTCCTTTTGTATTGTCAATTTGCTGTATGCTTCTGGGCAGATGGAATTGGGGGGGGGGGGGGGATTTTGACTGCAGAAAGTCTGAGGAAGAGAAGGATCGCCCATATTGGTTGGTGCTTCATGTGCAGAGGCTTGGGCGAAGAGGTTGATCATCGCCTTTTGCATTGTCAAGCAGCTAAGCGATTGTGGACGGGTGGTCCTTGATTAATTTGGATTGCTATGGATGATGTCGGGCACAATGAAGAAGGCTTTCCATAGTTGGGCCTGAACTTCAGGCAAAGAGAAGTTCAAGGTCTTGGAATGTTATTTAGTCATTATGTGTAATATGGAAATAGAGAGATAGAACTTTTGAAGGGGTTGTCCATAACTTTGTAAATCTGTAAAATAGTCTTTTGTCTCTAGTTTCTTTTGGTGTACCCAAAAGGTACCTATTTGTGTTGATGATTTGGTTTATTCTGTTGAGGATCATATTTTGGTGTAGGTTATCTTCTTTTTGGCGTACAACTTGCATACACATGGTTTCCACAATTTTTAGTAAAGTTTAAATGAAAAAAAATAACTTAGAGATAAGTGTGACATTTAGAGAATCTAGAATTTTAGAGATTTATCTAATTGTCTTGAAAGATAAATTATTGAATACATTATTTAATTTGTCCTAAATAGCATGGAATAGATATGGATACAGAGGATGCATATTCTGTTTTTTCAAGAATGACCAGAAGTAGACTTGTCCTGAATAATTACATCCGACCTTTTGTCTTGATTCATAGTCAAAAAAGACAGGATCTAAAGGCACACAATTTTTTATCTTAACCAACTTAGGTGGTGGTAATGCTCCAAGTATTTAGAAGATATGAATTTTGTAAAATAGCTCATTTTGGACTTATAATGGGATGTTGTTAAGGTATTTTTTAGTGTGTCTATGAAATTAGATAAATCTTTCTTAGCAAGCCTCCTTCCTGGCTGAATAAAGGTTGAGATTCCAGAATGCTGGTCTGCTCAAACAAAGCATATACAAAGATCCATAACCTTAACCTTTGCTATCCAAGGGGTATCTTGTGAAGAAGGCCACTTTTCCTGGTGTTCCTATCCCTTCTTAGGCTGTAGTGCTTAATAAGTTATGTGGATTGTATGGTCTTCCTAAGAAAGAGAGACACATTTGATTAATAAGTTAACTTCACTAGTTACTCTGCATGAAAGGGAAAAAAAGAAAAGAAATTATCTGCAATTGCAGTTCTTTTTGCTAGATTCTTTATAAGTATGGATGACAGCTCTTATTTTTCTAGCATCTTATTCTTTTCTTTGTAACATTTATCTGTACTTCTATTCTTTAGGTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCAGTAAGTAGTTCTTTTAAGTTTTGTTTGCAAGTGTTGCTATATTGTAGATTTTGATGATTGAGGAATTAACTTTTGCAGACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTG</genome_strand>
        <mrna_strand>CTGAAATCCAGAAAACCCCAAAATCTGACAAACTCAGAGAGTG..........................................................................................................................................................GTATTTATCAATGTTACGAAAAGCTGTGAAGGAAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAA............................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCA..............................................................................ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAAGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366484" ref_strand="+" ref_description="SGN-E366484 [cLPT-13-C10]">
      <seq>tggatctcacaatttatttgaccatttcttcaccaccacaggcgaatgtaaagctaaaatcactgcagctcgcctgccctattttgatggagactattggcctggtgcagcagaggatatgatttttcaacttcaacaagaagaagatgggaggaaacatcataagaagggggctatgaagaagaccatatcaaaaagagctcttaaagcatctggtcaatccgatctttctggaaatgcaactaaggatatacttctaatgcacaaacttggtgaaactatttctccaatgaaggaagattttattatggtccatttgcagcatgcatgtactcattgctgtattctgatggtatccggtaatcgttgggtatgcaaacaatgcaagaattttcagctttgcgacaagtgctatgaagttgagcaaaaactcgaagccagagaaaggcatcctctctatcacaaggacattcatatgctttatccaactgaaattgatgatgtacctgctgatacaaaggatccagatgaaattcttgagagtgagttttttgatacaaggcaggcatttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="35963" stop="40740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36263" g_stop="36531" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36532" i_stop="36927" i_length="396">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36928" g_stop="37067" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="408" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40195" g_stop="40273" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="487" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40352" g_stop="40440" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="576" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E366484" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36263" e_stop="36531"/>
          <exon e_start="36928" e_stop="37067"/>
          <exon e_start="40195" e_stop="40273"/>
          <exon e_start="40352" e_stop="40440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAAGTAATTTTATCCTCTAGACATCTTTATTAATCTGATCATTCTGGAAATGCATCTAATTATCTACTTCTAATGCACAAAGTAATTTTAGCGTCTAAACACTTTATTTACTCCTAACCTTCTTCTACTTCCTCTATGAATGTTTGTTGACTGATTTTGCTGTTAATATGTGTTGTGCATTCATCAAAAGATACATCGCGGTTTGTGGCTTGCAGCCTTTTGAACTATTTAAACTATTTAGTATTTTTCCTCTGTAAATACTCCTCTGGAATATATTGCCACTCTCTTATCAAGCACTGACTATTTGTAAAATTATTTTGTTTAAAGCTGATGGACTATCAACCTCCTCCTTTTATGTATACATTCTTTTGTGTCCTCACAAATTTCTACTTGTCGCAGCTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAAGTATGACTCTTGCCTCTCTCATTTCGTTTATTAGAGTTGTAAAAACTTTTCTAATAAGAGTCATGCTTATTACACACTTGAAAGTGAATCAACTACAAGTAATCTTCTTCTCATCTGAAATGAGAACAGAGAAAAAACAAGCTAGACAAAAAAGTACTCAGGATTGTCTTTTTTCTTGTTTAACAAAGTGTCGTTTTCTGTCTTCTGATTGATTATCCAAAGGGACTTAATTTTTAAGTGACCACTAAGCTATATATCCATGAAACAAAATCGCCAAAACCTTGGGGTTCATATTTTTCTTTGTAATGTTAAAAGGCACCCTTTGAGTGCTGAAGTAAGTTTAACAAGGGTAGAACACACAATACAAATGATAGTCTTCTCAAAGCAGGACCTTACTAGACCACTCATTCTTGGTCATGAACTTGCTAATCTTTGCAATATAGTTTCACATTTGTGCATGCTGCGCATTGCACAATCAGCTGATGCCTAATAGGTGATTTTCCATACATTTATTGGAAAAACTAGCGACATCTAAACTCCAAACAGCTGTTCCCATGTACGTATAACGGAGGTAGGTTGACAATTAGCAGGGGAGGACTACATATAAAAAAAGAAATGAAACTGTAAAAAAAAATTATTGCTGAGTGCAAGTCAGATTAGATATATTCTCATCTGGTAAAATTTGTGAGTAACACATACAAGATAAAATGAGGGAAGGTCATCTAAGATGGTTTTTCCATCTCATACATAGGTATTATGATGATTGAAGGTGTTAAAAAGGAGATGAGGTTGATCTAAGGTTCACATGGAAAATGGGATGGAAGTAAAGATCTATATAGACGATATTTACCAAGTGATGTTAATGTTTAGTCGTTTGTACACTTACCTCTGGTTCGGTATCTCTCAAGAGTAATGTTAGTTGGTTAGAAGTGAATGGGGGCCTGTTTTATGTCTTCACTTCCGCATGCTCCTGGTAGCATGATACTTAGACCAGGAAGATTTCTACGGAACTTCCTATGGAGTACAACAGAGGATATAAAGAAGTTCCATTTTGTGAACCGGAGAGTTGTTACATCTCCACAGGAATGGGGGTAAAGTCGGAGTAAAAAATCTGAATGTTTTCAACAGAGTTCTGCCAGAGAAGTGGATTTGATATGGGATGGAGGGTGGTTGCTGAAAAATATGGTATGATGGAAGGGGGGTAGAGGACTAGAAACATCTCAGTCCCGTTTGGGTGCAACTTATGGATGGGTATATTATGAAAGGATGAGAAGAATCCAGTGGAATATTTTCATTTAGGGTGGGAAATGGAAGAAGGGTTTTATCTTGGGAGCACATGTAGCATGGAGAATTGATTAAGGGAAGTGCTTCCCAACATATATATATGTAGTTTCTTGGAAAAGAGAGACGACTATCCAACAAGTTCGTATGATTCATGAGGGAAGTTCACTGGAATTTGAGATTTAGGAAGAACCCACTGGACTGGGAGATCAAGGAATATCTAGGTTGAACTTTTGTACAGGGAGAACACACCACATGTTGCATTCGAGGTATGAAGATGGCAAGAGAATAGAGATGATTTGTCCATTGTCAAATCTTATTATGAGAGGTTACTACGGAGAGAGAGGGATCAAACATTTCCTACTCGACTTCCCAGGGTGCATAAGAAGCTTTACTTCTGTGTGGTTGGTAACAAGGGAAGTGATTTTGACGACATAAAATCTAAGGAAGAGGAAGATCACCTATGTTTTGGTTGCTTTATGTGCAGAGGTTCGAGCAGAGAGGTTGATCATCTCCTTTTGTATTGTCAATTTGCTGTATGCTTCTGGGCAGATGGAATTGGGGGGGGGGGGGGGATTTTGACTGCAGAAAGTCTGAGGAAGAGAAGGATCGCCCATATTGGTTGGTGCTTCATGTGCAGAGGCTTGGGCGAAGAGGTTGATCATCGCCTTTTGCATTGTCAAGCAGCTAAGCGATTGTGGACGGGTGGTCCTTGATTAATTTGGATTGCTATGGATGATGTCGGGCACAATGAAGAAGGCTTTCCATAGTTGGGCCTGAACTTCAGGCAAAGAGAAGTTCAAGGTCTTGGAATGTTATTTAGTCATTATGTGTAATATGGAAATAGAGAGATAGAACTTTTGAAGGGGTTGTCCATAACTTTGTAAATCTGTAAAATAGTCTTTTGTCTCTAGTTTCTTTTGGTGTACCCAAAAGGTACCTATTTGTGTTGATGATTTGGTTTATTCTGTTGAGGATCATATTTTGGTGTAGGTTATCTTCTTTTTGGCGTACAACTTGCATACACATGGTTTCCACAATTTTTAGTAAAGTTTAAATGAAAAAAAATAACTTAGAGATAAGTGTGACATTTAGAGAATCTAGAATTTTAGAGATTTATCTAATTGTCTTGAAAGATAAATTATTGAATACATTATTTAATTTGTCCTAAATAGCATGGAATAGATATGGATACAGAGGATGCATATTCTGTTTTTTCAAGAATGACCAGAAGTAGACTTGTCCTGAATAATTACATCCGACCTTTTGTCTTGATTCATAGTCAAAAAAGACAGGATCTAAAGGCACACAATTTTTTATCTTAACCAACTTAGGTGGTGGTAATGCTCCAAGTATTTAGAAGATATGAATTTTGTAAAATAGCTCATTTTGGACTTATAATGGGATGTTGTTAAGGTATTTTTTAGTGTGTCTATGAAATTAGATAAATCTTTCTTAGCAAGCCTCCTTCCTGGCTGAATAAAGGTTGAGATTCCAGAATGCTGGTCTGCTCAAACAAAGCATATACAAAGATCCATAACCTTAACCTTTGCTATCCAAGGGGTATCTTGTGAAGAAGGCCACTTTTCCTGGTGTTCCTATCCCTTCTTAGGCTGTAGTGCTTAATAAGTTATGTGGATTGTATGGTCTTCCTAAGAAAGAGAGACACATTTGATTAATAAGTTAACTTCACTAGTTACTCTGCATGAAAGGGAAAAAAAGAAAAGAAATTATCTGCAATTGCAGTTCTTTTTGCTAGATTCTTTATAAGTATGGATGACAGCTCTTATTTTTCTAGCATCTTATTCTTTTCTTTGTAACATTTATCTGTACTTCTATTCTTTAGGTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCAGTAAGTAGTTCTTTTAAGTTTTGTTTGCAAGTGTTGCTATATTGTAGATTTTGATGATTGAGGAATTAACTTTTGCAGACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAG</genome_strand>
        <mrna_strand>TGGATCTCAC-AATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAA............................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAATTTTCAGCTTTGCGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCA..............................................................................ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326706" ref_strand="+" ref_description="SGN-E326706 [cTOC-17-H16]">
      <seq>caatccgatctttctggaaatgcaactaaggatatacttctaatgcacaaacttggtgaaactatttctccaatgaaggaagattttattatgggccatttgcagcatgcatgtactcattgctgaattctgatggtatccgggaatcgttgggtatgcaaacaatgcaagaactttcacctttgcgacaagtgctatgaagttgagcaaaaactcgaagccagagaaaggcatcctctctatcacaaggacattcgtatgctttatccaactgaaattgatgatgtacctgctgatacaaaggatccagatgaaattcttgacagtgagttttttgatacaaggcaggcatttttgagcctttgtcaaggacaccattaccaatatgataccctgcggcgtgctaaacattcctcaatgatggtcctttaccaccttcataatcccactgcaccagcttttgcgacaacttgcaatatttgtcatcttgacctagaaacaggtcaaggatggcggtgtgaaacttgtcctgcatatgatgtatgtaatgcttgctatcataaggatggtggagttgatcatcctcacaagttaactcatcacccatgcctttgctgagcgtgatgctcagaataaagaagctacacaacgacgagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="36181" stop="41039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36481" g_stop="36531" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36532" i_stop="36927" i_length="396">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36928" g_stop="37067" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="191" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40195" g_stop="40273" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="270" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40352" g_stop="40739" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="659" r_length="389" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E326706" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36481" e_stop="36531"/>
          <exon e_start="36928" e_stop="37067"/>
          <exon e_start="40195" e_stop="40273"/>
          <exon e_start="40352" e_stop="40739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAAGTAATTTTATCCTCTAGACATCTTTATTAATCTGATCATTCTGGAAATGCATCTAATTATCTACTTCTAATGCACAAAGTAATTTTAGCGTCTAAACACTTTATTTACTCCTAACCTTCTTCTACTTCCTCTATGAATGTTTGTTGACTGATTTTGCTGTTAATATGTGTTGTGCATTCATCAAAAGATACATCGCGGTTTGTGGCTTGCAGCCTTTTGAACTATTTAAACTATTTAGTATTTTTCCTCTGTAAATACTCCTCTGGAATATATTGCCACTCTCTTATCAAGCACTGACTATTTGTAAAATTATTTTGTTTAAAGCTGATGGACTATCAACCTCCTCCTTTTATGTATACATTCTTTTGTGTCCTCACAAATTTCTACTTGTCGCAGCTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAAGTATGACTCTTGCCTCTCTCATTTCGTTTATTAGAGTTGTAAAAACTTTTCTAATAAGAGTCATGCTTATTACACACTTGAAAGTGAATCAACTACAAGTAATCTTCTTCTCATCTGAAATGAGAACAGAGAAAAAACAAGCTAGACAAAAAAGTACTCAGGATTGTCTTTTTTCTTGTTTAACAAAGTGTCGTTTTCTGTCTTCTGATTGATTATCCAAAGGGACTTAATTTTTAAGTGACCACTAAGCTATATATCCATGAAACAAAATCGCCAAAACCTTGGGGTTCATATTTTTCTTTGTAATGTTAAAAGGCACCCTTTGAGTGCTGAAGTAAGTTTAACAAGGGTAGAACACACAATACAAATGATAGTCTTCTCAAAGCAGGACCTTACTAGACCACTCATTCTTGGTCATGAACTTGCTAATCTTTGCAATATAGTTTCACATTTGTGCATGCTGCGCATTGCACAATCAGCTGATGCCTAATAGGTGATTTTCCATACATTTATTGGAAAAACTAGCGACATCTAAACTCCAAACAGCTGTTCCCATGTACGTATAACGGAGGTAGGTTGACAATTAGCAGGGGAGGACTACATATAAAAAAAGAAATGAAACTGTAAAAAAAAATTATTGCTGAGTGCAAGTCAGATTAGATATATTCTCATCTGGTAAAATTTGTGAGTAACACATACAAGATAAAATGAGGGAAGGTCATCTAAGATGGTTTTTCCATCTCATACATAGGTATTATGATGATTGAAGGTGTTAAAAAGGAGATGAGGTTGATCTAAGGTTCACATGGAAAATGGGATGGAAGTAAAGATCTATATAGACGATATTTACCAAGTGATGTTAATGTTTAGTCGTTTGTACACTTACCTCTGGTTCGGTATCTCTCAAGAGTAATGTTAGTTGGTTAGAAGTGAATGGGGGCCTGTTTTATGTCTTCACTTCCGCATGCTCCTGGTAGCATGATACTTAGACCAGGAAGATTTCTACGGAACTTCCTATGGAGTACAACAGAGGATATAAAGAAGTTCCATTTTGTGAACCGGAGAGTTGTTACATCTCCACAGGAATGGGGGTAAAGTCGGAGTAAAAAATCTGAATGTTTTCAACAGAGTTCTGCCAGAGAAGTGGATTTGATATGGGATGGAGGGTGGTTGCTGAAAAATATGGTATGATGGAAGGGGGGTAGAGGACTAGAAACATCTCAGTCCCGTTTGGGTGCAACTTATGGATGGGTATATTATGAAAGGATGAGAAGAATCCAGTGGAATATTTTCATTTAGGGTGGGAAATGGAAGAAGGGTTTTATCTTGGGAGCACATGTAGCATGGAGAATTGATTAAGGGAAGTGCTTCCCAACATATATATATGTAGTTTCTTGGAAAAGAGAGACGACTATCCAACAAGTTCGTATGATTCATGAGGGAAGTTCACTGGAATTTGAGATTTAGGAAGAACCCACTGGACTGGGAGATCAAGGAATATCTAGGTTGAACTTTTGTACAGGGAGAACACACCACATGTTGCATTCGAGGTATGAAGATGGCAAGAGAATAGAGATGATTTGTCCATTGTCAAATCTTATTATGAGAGGTTACTACGGAGAGAGAGGGATCAAACATTTCCTACTCGACTTCCCAGGGTGCATAAGAAGCTTTACTTCTGTGTGGTTGGTAACAAGGGAAGTGATTTTGACGACATAAAATCTAAGGAAGAGGAAGATCACCTATGTTTTGGTTGCTTTATGTGCAGAGGTTCGAGCAGAGAGGTTGATCATCTCCTTTTGTATTGTCAATTTGCTGTATGCTTCTGGGCAGATGGAATTGGGGGGGGGGGGGGGATTTTGACTGCAGAAAGTCTGAGGAAGAGAAGGATCGCCCATATTGGTTGGTGCTTCATGTGCAGAGGCTTGGGCGAAGAGGTTGATCATCGCCTTTTGCATTGTCAAGCAGCTAAGCGATTGTGGACGGGTGGTCCTTGATTAATTTGGATTGCTATGGATGATGTCGGGCACAATGAAGAAGGCTTTCCATAGTTGGGCCTGAACTTCAGGCAAAGAGAAGTTCAAGGTCTTGGAATGTTATTTAGTCATTATGTGTAATATGGAAATAGAGAGATAGAACTTTTGAAGGGGTTGTCCATAACTTTGTAAATCTGTAAAATAGTCTTTTGTCTCTAGTTTCTTTTGGTGTACCCAAAAGGTACCTATTTGTGTTGATGATTTGGTTTATTCTGTTGAGGATCATATTTTGGTGTAGGTTATCTTCTTTTTGGCGTACAACTTGCATACACATGGTTTCCACAATTTTTAGTAAAGTTTAAATGAAAAAAAATAACTTAGAGATAAGTGTGACATTTAGAGAATCTAGAATTTTAGAGATTTATCTAATTGTCTTGAAAGATAAATTATTGAATACATTATTTAATTTGTCCTAAATAGCATGGAATAGATATGGATACAGAGGATGCATATTCTGTTTTTTCAAGAATGACCAGAAGTAGACTTGTCCTGAATAATTACATCCGACCTTTTGTCTTGATTCATAGTCAAAAAAGACAGGATCTAAAGGCACACAATTTTTTATCTTAACCAACTTAGGTGGTGGTAATGCTCCAAGTATTTAGAAGATATGAATTTTGTAAAATAGCTCATTTTGGACTTATAATGGGATGTTGTTAAGGTATTTTTTAGTGTGTCTATGAAATTAGATAAATCTTTCTTAGCAAGCCTCCTTCCTGGCTGAATAAAGGTTGAGATTCCAGAATGCTGGTCTGCTCAAACAAAGCATATACAAAGATCCATAACCTTAACCTTTGCTATCCAAGGGGTATCTTGTGAAGAAGGCCACTTTTCCTGGTGTTCCTATCCCTTCTTAGGCTGTAGTGCTTAATAAGTTATGTGGATTGTATGGTCTTCCTAAGAAAGAGAGACACATTTGATTAATAAGTTAACTTCACTAGTTACTCTGCATGAAAGGGAAAAAAAGAAAAGAAATTATCTGCAATTGCAGTTCTTTTTGCTAGATTCTTTATAAGTATGGATGACAGCTCTTATTTTTCTAGCATCTTATTCTTTTCTTTGTAACATTTATCTGTACTTCTATTCTTTAGGTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCAGTAAGTAGTTCTTTTAAGTTTTGTTTGCAAGTGTTGCTATATTGTAGATTTTGATGATTGAGGAATTAACTTTTGCAGACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCAT-CCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACAACAACGAGTTC</genome_strand>
        <mrna_strand>CAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAA............................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGGCCATTTGCAGCATGCATGTACTCATTGCTGAATTCTGATGGTATCCGGGAATCGTTGGGTATGCAAACAATGCAAGAACTTTCACCTTTGCGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCGTATGCTTTATCCA..............................................................................ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGACAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGACACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGCGACAACTTGCAATATTTGTCATCTTGACCTAGAAACAGGTCAAGGATGGCGGTGTGAAACTTGTCCTGCATATGATGTATGTAATGCTTGCTATCATAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATGCCTTTGCTGAGCGTGATGCTCAGAATAAAGAAGCTACACAACGACGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212168" ref_strand="+" ref_description="SGN-E212168 [cLEC-75-J8]">
      <seq>aaacaatgcaagaactttcagctttgcgacaagtgctatgaagttgagcaaaaactcgaagccagagaaaggcatcctctctatcacaaggacattcatatgctttatccaactgaaattgatgatgtacctgctgatacaaaggatccagatgaaattcttgagagtgagttttttgatacaaggcaggcatttttgagcctttgtcaaggaaaccattaccaatatgataccctgcggcgtgctaaacattcctcaatgatggtcctttaccaccttcataatcccactgcaccagcttttgtgacaacttgcaatatttgtcatcttgacatagaaacaggtcaaggttggcggtgtgaaacttgtcctgattatgatgtatgtaatgcttgctatcagaaggatggtggagttgatcatcctcacaagttaactcatcacccatccattgctgagcgtgatgctcagaataaagaagctagacnacaacgagttctgcagcttaggaagatgcttgacctcttggtgcatgcatctcagtgccgctcttcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="36736" stop="41312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37036" g_stop="37067" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40195" g_stop="40273" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="111" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40352" g_stop="40744" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="504" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40745" i_stop="40957" i_length="213">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40958" g_stop="41012" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="559" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E212168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37036" e_stop="37067"/>
          <exon e_start="40195" e_stop="40273"/>
          <exon e_start="40352" e_stop="40744"/>
          <exon e_start="40958" e_stop="41012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATGCAAGAACTTTCAGCTTTGCGACAAGTATGACTCTTGCCTCTCTCATTTCGTTTATTAGAGTTGTAAAAACTTTTCTAATAAGAGTCATGCTTATTACACACTTGAAAGTGAATCAACTACAAGTAATCTTCTTCTCATCTGAAATGAGAACAGAGAAAAAACAAGCTAGACAAAAAAGTACTCAGGATTGTCTTTTTTCTTGTTTAACAAAGTGTCGTTTTCTGTCTTCTGATTGATTATCCAAAGGGACTTAATTTTTAAGTGACCACTAAGCTATATATCCATGAAACAAAATCGCCAAAACCTTGGGGTTCATATTTTTCTTTGTAATGTTAAAAGGCACCCTTTGAGTGCTGAAGTAAGTTTAACAAGGGTAGAACACACAATACAAATGATAGTCTTCTCAAAGCAGGACCTTACTAGACCACTCATTCTTGGTCATGAACTTGCTAATCTTTGCAATATAGTTTCACATTTGTGCATGCTGCGCATTGCACAATCAGCTGATGCCTAATAGGTGATTTTCCATACATTTATTGGAAAAACTAGCGACATCTAAACTCCAAACAGCTGTTCCCATGTACGTATAACGGAGGTAGGTTGACAATTAGCAGGGGAGGACTACATATAAAAAAAGAAATGAAACTGTAAAAAAAAATTATTGCTGAGTGCAAGTCAGATTAGATATATTCTCATCTGGTAAAATTTGTGAGTAACACATACAAGATAAAATGAGGGAAGGTCATCTAAGATGGTTTTTCCATCTCATACATAGGTATTATGATGATTGAAGGTGTTAAAAAGGAGATGAGGTTGATCTAAGGTTCACATGGAAAATGGGATGGAAGTAAAGATCTATATAGACGATATTTACCAAGTGATGTTAATGTTTAGTCGTTTGTACACTTACCTCTGGTTCGGTATCTCTCAAGAGTAATGTTAGTTGGTTAGAAGTGAATGGGGGCCTGTTTTATGTCTTCACTTCCGCATGCTCCTGGTAGCATGATACTTAGACCAGGAAGATTTCTACGGAACTTCCTATGGAGTACAACAGAGGATATAAAGAAGTTCCATTTTGTGAACCGGAGAGTTGTTACATCTCCACAGGAATGGGGGTAAAGTCGGAGTAAAAAATCTGAATGTTTTCAACAGAGTTCTGCCAGAGAAGTGGATTTGATATGGGATGGAGGGTGGTTGCTGAAAAATATGGTATGATGGAAGGGGGGTAGAGGACTAGAAACATCTCAGTCCCGTTTGGGTGCAACTTATGGATGGGTATATTATGAAAGGATGAGAAGAATCCAGTGGAATATTTTCATTTAGGGTGGGAAATGGAAGAAGGGTTTTATCTTGGGAGCACATGTAGCATGGAGAATTGATTAAGGGAAGTGCTTCCCAACATATATATATGTAGTTTCTTGGAAAAGAGAGACGACTATCCAACAAGTTCGTATGATTCATGAGGGAAGTTCACTGGAATTTGAGATTTAGGAAGAACCCACTGGACTGGGAGATCAAGGAATATCTAGGTTGAACTTTTGTACAGGGAGAACACACCACATGTTGCATTCGAGGTATGAAGATGGCAAGAGAATAGAGATGATTTGTCCATTGTCAAATCTTATTATGAGAGGTTACTACGGAGAGAGAGGGATCAAACATTTCCTACTCGACTTCCCAGGGTGCATAAGAAGCTTTACTTCTGTGTGGTTGGTAACAAGGGAAGTGATTTTGACGACATAAAATCTAAGGAAGAGGAAGATCACCTATGTTTTGGTTGCTTTATGTGCAGAGGTTCGAGCAGAGAGGTTGATCATCTCCTTTTGTATTGTCAATTTGCTGTATGCTTCTGGGCAGATGGAATTGGGGGGGGGGGGGGGATTTTGACTGCAGAAAGTCTGAGGAAGAGAAGGATCGCCCATATTGGTTGGTGCTTCATGTGCAGAGGCTTGGGCGAAGAGGTTGATCATCGCCTTTTGCATTGTCAAGCAGCTAAGCGATTGTGGACGGGTGGTCCTTGATTAATTTGGATTGCTATGGATGATGTCGGGCACAATGAAGAAGGCTTTCCATAGTTGGGCCTGAACTTCAGGCAAAGAGAAGTTCAAGGTCTTGGAATGTTATTTAGTCATTATGTGTAATATGGAAATAGAGAGATAGAACTTTTGAAGGGGTTGTCCATAACTTTGTAAATCTGTAAAATAGTCTTTTGTCTCTAGTTTCTTTTGGTGTACCCAAAAGGTACCTATTTGTGTTGATGATTTGGTTTATTCTGTTGAGGATCATATTTTGGTGTAGGTTATCTTCTTTTTGGCGTACAACTTGCATACACATGGTTTCCACAATTTTTAGTAAAGTTTAAATGAAAAAAAATAACTTAGAGATAAGTGTGACATTTAGAGAATCTAGAATTTTAGAGATTTATCTAATTGTCTTGAAAGATAAATTATTGAATACATTATTTAATTTGTCCTAAATAGCATGGAATAGATATGGATACAGAGGATGCATATTCTGTTTTTTCAAGAATGACCAGAAGTAGACTTGTCCTGAATAATTACATCCGACCTTTTGTCTTGATTCATAGTCAAAAAAGACAGGATCTAAAGGCACACAATTTTTTATCTTAACCAACTTAGGTGGTGGTAATGCTCCAAGTATTTAGAAGATATGAATTTTGTAAAATAGCTCATTTTGGACTTATAATGGGATGTTGTTAAGGTATTTTTTAGTGTGTCTATGAAATTAGATAAATCTTTCTTAGCAAGCCTCCTTCCTGGCTGAATAAAGGTTGAGATTCCAGAATGCTGGTCTGCTCAAACAAAGCATATACAAAGATCCATAACCTTAACCTTTGCTATCCAAGGGGTATCTTGTGAAGAAGGCCACTTTTCCTGGTGTTCCTATCCCTTCTTAGGCTGTAGTGCTTAATAAGTTATGTGGATTGTATGGTCTTCCTAAGAAAGAGAGACACATTTGATTAATAAGTTAACTTCACTAGTTACTCTGCATGAAAGGGAAAAAAAGAAAAGAAATTATCTGCAATTGCAGTTCTTTTTGCTAGATTCTTTATAAGTATGGATGACAGCTCTTATTTTTCTAGCATCTTATTCTTTTCTTTGTAACATTTATCTGTACTTCTATTCTTTAGGTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCAGTAAGTAGTTCTTTTAAGTTTTGTTTGCAAGTGTTGCTATATTGTAGATTTTGATGATTGAGGAATTAACTTTTGCAGACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACAACAACGAGTTCTGCAGGTGCATTTTCCGTGGCCATTAATATTGGTTGTGGTTTTTTGCTGTTCTCTGTCACTCAACCCCCACCCCCAAGCCATAAGTTAAAAATAAGAGGAGAATATGCTAATCTCTGGTTGTGGTTGTATATGATAAAAACATTCCTTTGCACTATGCTAATCTCTTTGTTATGCTTACATATGAAGTCTGAAATGATCTTGCGATTTGATTCTGCAGCTTAGGAAGATGCTTGACCTCTTGGTGCATGCATCTCAGTGCCGCTCTTCCCATT</genome_strand>
        <mrna_strand>AAACAATGCAAGAACTTTCAGCTTTGCGACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCA..............................................................................ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACNACAACGAGTTCTGCAG.....................................................................................................................................................................................................................CTTAGGAAGATGCTTGACCTCTTGGTGCATGCATCTCAGTGCCGCTCTTCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375087" ref_strand="+" ref_description="SGN-E375087 [TUS-36-G17]">
      <seq>ttgcaaagtatccgagtgtcatgtgccgcgatgcagagatttgaaagaacatcttcgaaggctgcaacagcaagctgattctcggcggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccttgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgaaatcgatataatatatagagataatttttcattttatagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="40840" stop="42751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41140" g_stop="41175" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41818" g_stop="42451" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="670" r_length="634" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E375087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41140" e_stop="41175"/>
          <exon e_start="41818" e_stop="42451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAGGTCAGTTGGCTTTTAATTTTTTTTATTAGGTATTGGGGAAGGGGAAGTGAGAATGAAGTGGAAATCACACACACCTATTGTGTGGGGAACTCCCACCAATACCACCATGCTATGAGCCTTGGTGGTAGGTCAGTTGGCTATTACCTCCCGGTATAGGTGTTCACAGTCACTTCTTTTGTATGGTAAATAATTTACTAATATTGGGAGAAGCTCCCCTATACAAGTGGGCGCTTGTAATCACTTATTAAAAACAGCAATTGATAATAGTAATAAACAAGTTATTTAATACTGGAATGTAATGTTCCCGTATGGAGTCAAATGCATACTAAGAATTCATATAGCCAAACCACACTAGATTGAGGCTGATGATGGTAGTAGCAGTAGTAATAGATGTCATTATAGAAGTAAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCATCCCCCTCTGTCTCCCCCGTTAGTCTCAGTGTAGATATCAGCTAAATGAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCCCGCTCCTTTCCCCCCTCCGTCTCCCCTTGGTTTCATTAGTCTCTGTTGATATCAGCTAAATCTTGTTCACAACATAAAATTGCAACTCTATTACCATTCACAGAGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTTA</genome_strand>
        <mrna_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTTTCATTTTATAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231239" ref_strand="+" ref_description="SGN-E231239 [cLED-5-H23]">
      <seq>ttgcaaagtatccgagtgtcatgtgccgcgatgcagagatttgaaagaacatcttcgaaggctgcaacagcaagctgattctcggcggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="40840" stop="42638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41140" g_stop="41175" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41818" g_stop="42338" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="557" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E231239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41140" e_stop="41175"/>
          <exon e_start="41818" e_stop="42338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAGGTCAGTTGGCTTTTAATTTTTTTTATTAGGTATTGGGGAAGGGGAAGTGAGAATGAAGTGGAAATCACACACACCTATTGTGTGGGGAACTCCCACCAATACCACCATGCTATGAGCCTTGGTGGTAGGTCAGTTGGCTATTACCTCCCGGTATAGGTGTTCACAGTCACTTCTTTTGTATGGTAAATAATTTACTAATATTGGGAGAAGCTCCCCTATACAAGTGGGCGCTTGTAATCACTTATTAAAAACAGCAATTGATAATAGTAATAAACAAGTTATTTAATACTGGAATGTAATGTTCCCGTATGGAGTCAAATGCATACTAAGAATTCATATAGCCAAACCACACTAGATTGAGGCTGATGATGGTAGTAGCAGTAGTAATAGATGTCATTATAGAAGTAAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCATCCCCCTCTGTCTCCCCCGTTAGTCTCAGTGTAGATATCAGCTAAATGAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCCCGCTCCTTTCCCCCCTCCGTCTCCCCTTGGTTTCATTAGTCTCTGTTGATATCAGCTAAATCTTGTTCACAACATAAAATTGCAACTCTATTACCATTCACAGAGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGT</genome_strand>
        <mrna_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241473" ref_strand="+" ref_description="SGN-E241473 [cLED-28-M5]">
      <seq>ttgcaaagtatccgagtgtcatgtgccgcgatgcagagatttgaaagaacatcttcgaaggctgcaacagcaagctgattctcggcggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattntatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="40840" stop="42609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41140" g_stop="41175" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41818" g_stop="42309" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="528" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E241473" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41140" e_stop="41175"/>
          <exon e_start="41818" e_stop="42309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAGGTCAGTTGGCTTTTAATTTTTTTTATTAGGTATTGGGGAAGGGGAAGTGAGAATGAAGTGGAAATCACACACACCTATTGTGTGGGGAACTCCCACCAATACCACCATGCTATGAGCCTTGGTGGTAGGTCAGTTGGCTATTACCTCCCGGTATAGGTGTTCACAGTCACTTCTTTTGTATGGTAAATAATTTACTAATATTGGGAGAAGCTCCCCTATACAAGTGGGCGCTTGTAATCACTTATTAAAAACAGCAATTGATAATAGTAATAAACAAGTTATTTAATACTGGAATGTAATGTTCCCGTATGGAGTCAAATGCATACTAAGAATTCATATAGCCAAACCACACTAGATTGAGGCTGATGATGGTAGTAGCAGTAGTAATAGATGTCATTATAGAAGTAAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCATCCCCCTCTGTCTCCCCCGTTAGTCTCAGTGTAGATATCAGCTAAATGAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCCCGCTCCTTTCCCCCCTCCGTCTCCCCTTGGTTTCATTAGTCTCTGTTGATATCAGCTAAATCTTGTTCACAACATAAAATTGCAACTCTATTACCATTCACAGAGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTC</genome_strand>
        <mrna_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTNTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376819" ref_strand="+" ref_description="SGN-E376819 [TUS-19-H13]">
      <seq>ttgcaaagtatccgagtgtcatgtgccgcgatgcagagatttgaaagaacatcttcgaaggctgcaacagcaagctgattctcggcggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttatttctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttataatgcattaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="40840" stop="42560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41140" g_stop="41175" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41818" g_stop="42260" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="480" r_length="444" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E376819" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41140" e_stop="41175"/>
          <exon e_start="41818" e_stop="42260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAGGTCAGTTGGCTTTTAATTTTTTTTATTAGGTATTGGGGAAGGGGAAGTGAGAATGAAGTGGAAATCACACACACCTATTGTGTGGGGAACTCCCACCAATACCACCATGCTATGAGCCTTGGTGGTAGGTCAGTTGGCTATTACCTCCCGGTATAGGTGTTCACAGTCACTTCTTTTGTATGGTAAATAATTTACTAATATTGGGAGAAGCTCCCCTATACAAGTGGGCGCTTGTAATCACTTATTAAAAACAGCAATTGATAATAGTAATAAACAAGTTATTTAATACTGGAATGTAATGTTCCCGTATGGAGTCAAATGCATACTAAGAATTCATATAGCCAAACCACACTAGATTGAGGCTGATGATGGTAGTAGCAGTAGTAATAGATGTCATTATAGAAGTAAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCATCCCCCTCTGTCTCCCCCGTTAGTCTCAGTGTAGATATCAGCTAAATGAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCCCGCTCCTTTCCCCCCTCCGTCTCCCCTTGGTTTCATTAGTCTCTGTTGATATCAGCTAAATCTTGTTCACAACATAAAATTGCAACTCTATTACCATTCACAGAGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTA-TTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATT</genome_strand>
        <mrna_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATAATGCATTAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231323" ref_strand="+" ref_description="SGN-E231323 [cLED-10-H15]">
      <seq>ttgcaaagtatccgagtgtcatgtgccgcgatgcagagatttgaaagaacatcttcgaaggctgcaacagcaagctgattctcggcggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="40840" stop="42560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41140" g_stop="41175" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642">
            <donor d_prob="0.906" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41818" g_stop="42260" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="479" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E231323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41140" e_stop="41175"/>
          <exon e_start="41818" e_stop="42260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAGGTCAGTTGGCTTTTAATTTTTTTTATTAGGTATTGGGGAAGGGGAAGTGAGAATGAAGTGGAAATCACACACACCTATTGTGTGGGGAACTCCCACCAATACCACCATGCTATGAGCCTTGGTGGTAGGTCAGTTGGCTATTACCTCCCGGTATAGGTGTTCACAGTCACTTCTTTTGTATGGTAAATAATTTACTAATATTGGGAGAAGCTCCCCTATACAAGTGGGCGCTTGTAATCACTTATTAAAAACAGCAATTGATAATAGTAATAAACAAGTTATTTAATACTGGAATGTAATGTTCCCGTATGGAGTCAAATGCATACTAAGAATTCATATAGCCAAACCACACTAGATTGAGGCTGATGATGGTAGTAGCAGTAGTAATAGATGTCATTATAGAAGTAAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCATCCCCCTCTGTCTCCCCCGTTAGTCTCAGTGTAGATATCAGCTAAATGAACAAATAATTTTTAATGTTGCTGCAATCCCCTTGACCCCCCCGCTCCTTTCCCCCCTCCGTCTCCCCTTGGTTTCATTAGTCTCTGTTGATATCAGCTAAATCTTGTTCACAACATAAAATTGCAACTCTATTACCATTCACAGAGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATT</genome_strand>
        <mrna_strand>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375086" ref_strand="+" ref_description="SGN-E375086 [TUS-36-G17](-)">
      <seq>gatttgaaaaaacatcttcgaaggctgcacagcaagcttattctcgccggcgggctgctgttatggagatgatgagacagcgtgctgcagaggttgccaacagtgctgggtgaccatattgtacaagttgtaatggacatacacaagttgttaatgctgtacttgtaggtatcaacattattggggaagaaaagatctcgtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccttgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgaaatcgatataatatatagagataatttctcattttatagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="41519" stop="42751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41819" g_stop="42451" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E375086" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41819" e_stop="42451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTTA</genome_strand>
        <mrna_strand>GATTTGAAAAAACATCTTCGAAGGCTGC-ACAGCAAGCTTATTCTCGCCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376818" ref_strand="+" ref_description="SGN-E376818 [TUS-19-H13](-)">
      <seq>gtaggaatcagcataattgagaaagaaaagatatagtagcgtacaggaaactgctaacgaacatacaagcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccttgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgaaatcgatataatatatagagataatttctcattttatagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="41684" stop="42751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41984" g_stop="42451" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E376818" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41984" e_stop="42451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTTA</genome_strand>
        <mrna_strand>GTAGGAATCAGCATAATTGAGAAAGAAAAGATATAGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223978" ref_strand="+" ref_description="SGN-E223978 [cLEL-19-N15](-)">
      <seq>agcatgttcattgctggttaaccatcacctacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccttgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgaaatcgatataatatatagagataatttctcattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="41751" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42051" g_stop="42447" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="414"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E223978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42051" e_stop="42447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATA</genome_strand>
        <mrna_strand>AGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223835" ref_strand="+" ref_description="SGN-E223835 [cLEL-19-N15](-)">
      <seq>tacccgtggacctatattatccgagttgctctcatcaacaatgcatctcttggagtgtataggattccgagcattcccccacccgtagctcataagtgattttctttaaaattttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccttgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgaaatcgatataatatatagagataatttctcattttatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="41780" stop="42746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42080" g_stop="42447" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="386"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E223835" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42080" e_stop="42447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATT-CCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATA</genome_strand>
        <mrna_strand>TACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222692" ref_strand="+" ref_description="SGN-E222692 [cLEL-16-E24](-)">
      <seq>gttgctctcatcaccaatgcatctcttggagtgtataggattccaagcattccccacccgtagctcataagtgattttctttaaaatttagttctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtcttatttaaaaatgctcaagtacttcacatgtagcaagttactagtccgtgctagaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttaaagctgatatcgatataatatatagagataatttctcattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="41804" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42104" g_stop="42447" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="361"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E222692" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42104" e_stop="42447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATA</genome_strand>
        <mrna_strand>GTTGCTCTCATCACCAATGCATCTCTTGGAGTGTATAGGATTCCAAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTAGTTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCGTGCTAGAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGATATCGATATAATATATAGAGATAATTTCTCATTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222597" ref_strand="+" ref_description="SGN-E222597 [cLEL-16-C20](-)">
      <seq>tccccacccgaagctcataagtggttttctttaaaagtttattctgtggaattgttgagggcaaatgtgcctgttttcctgattaattttatcatgcattaaacattgggatttccttttcgtgtgaatagttagttgtctaatttaaaaatgctcaagtacttcacatgtagcaagttgctagtccgtgctaaaacttgttcttgacagttttttacccaatgtgacgatgatatgagtccgagcttagagctgaaatcggtataatatatacagataatttctcatttcctaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="41854" stop="42747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42154" g_stop="42447" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="295" polyA_stop="311"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E222597" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42154" e_stop="42447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATA</genome_strand>
        <mrna_strand>TCCCCACCCGAAGCTCATAAGTGGTTTTCTTTAAAAGTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTAATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTGCTAGTCCGTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAGAGCTGAAATCGGTATAATATATACAGATAATTTCTCATTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203151" ref_strand="+" ref_description="SGN-E203151 [cLEB-3-D8](-)">
      <seq>agcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagtatgatgttttacattagtttgtgttttcttccattggattttatcatattctcactaacaataagttaattcaaactgtacaggaagttatcttctgaaaaggtttaagtttgcattatattcattatgcaatctaccatatgttttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44799" stop="43677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44499" g_stop="43986" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="530"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E203151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44499" e_stop="43986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCCA</genome_strand>
        <mrna_strand>AGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317438" ref_strand="+" ref_description="SGN-E317438 [cTOA-28-L23]">
      <seq>acttattgttagtgagaatatgataaaatccaatggaagaaaacacaaactaatgtaaaacatcatactctaataatataatcttagtcattgcaatcttcaagagaaacaggactaacattaaacatagaagtcaacattaaacaagaaataaggtttaacaaaccaacataaatgatcttaaactaccacattcatgcagatgttatctgcttattcaacagagagctttcggcgcttgtacttcaccattacttcccctttgacaccgacaaccatagcgttccagtcaatttcagggaaaggcgagatcagttcaaactcgaaatttctcagcaagtgactccatattgctttaatctgcagataagcaaatggttctccaagacaaccatgtctgcctccaccaaaagaaatatatgagaatgctcctgcagccttatcttcttctctaccagggccgaacctatcagggtcgtaagtatctggattcttgaagatatgtggcagcctgtttgcaaaagcaggtgaggttgcaacgatatgtcccttgggaatgtcatactcttttccttctctggttgtaacactgaattcgctatgtgaactacgcagaagcattatcagtggaggatggagtctgagggcttcctttatgcatctgtagaggacttccatctcggaaaggatatcgtgatcaaccttattcccgtgtttcttcatcagattcttctgttcatctacaacagccgacatgtacttgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="43770" stop="45136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44070" g_stop="44836" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E317438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44070" e_stop="44836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATTGTTAGTGAGAATATGATAAAATCCAATGGAAGAAAACACAAACTAATGTAAAACATCATACTCTAATAATATAATCTTAGTCATTGCAATCTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAAACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTAATCTGCAGATAAGCAAATGGTTCTCCAAGACAACCATGTCTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCGTAAGTATCTGGATTCTTGAAGATATGTGGCAGCCTGTTTGCAAAAGCAGGTGAGGTTGCAACGATATGTCCCTTGGGAATGTCATACTCTTTTCCTTCTCTGGTTGTAACACTGAATTCGCTATGTGAACTACGCAGAAGCATTATCAGTGGAGGATGGAGTCTGAGGGCTTCCTTTATGCATCTGTAGAGGACTTCCATCTCGGAAAGGATATCGTGATCAACCTTATTCCCGTGTTTCTTCATCAGATTCTTCTGTTCATCTACAACAGCCGACATGTACTTGTCGT</genome_strand>
        <mrna_strand>ACTTATTGTTAGTGAGAATATGATAAAATCCAATGGAAGAAAACACAAACTAATGTAAAACATCATACTCTAATAATATAATCTTAGTCATTGCAATCTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAAACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTAATCTGCAGATAAGCAAATGGTTCTCCAAGACAACCATGTCTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCGTAAGTATCTGGATTCTTGAAGATATGTGGCAGCCTGTTTGCAAAAGCAGGTGAGGTTGCAACGATATGTCCCTTGGGAATGTCATACTCTTTTCCTTCTCTGGTTGTAACACTGAATTCGCTATGTGAACTACGCAGAAGCATTATCAGTGGAGGATGGAGTCTGAGGGCTTCCTTTATGCATCTGTAGAGGACTTCCATCTCGGAAAGGATATCGTGATCAACCTTATTCCCGTGTTTCTTCATCAGATTCTTCTGTTCATCTACAACAGCCGACATGTACTTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223618" ref_strand="+" ref_description="SGN-E223618 [cLEL-14-I24](-)">
      <seq>cattctcatatatttcttttggtggaggcagacatggatgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagtatgatgttttacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44797" stop="43820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44497" g_stop="44119" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E223618" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44497" e_stop="44119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAG</genome_strand>
        <mrna_strand>CATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGATGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732717" ref_strand="+" ref_description="SGN-E732717 [LB02DG06]">
      <seq>cttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacaacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtctgtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagtatgatgttttacattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45281" stop="43820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44982" g_stop="44120" g_length="863"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="864" polyA_stop="875"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E732717" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44982" e_stop="44120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTA</genome_strand>
        <mrna_strand>CTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACAACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCTGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711845" ref_strand="+" ref_description="SGN-E711845 [FB03AF09]">
      <seq>cgattaacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagtatgatgttttacattanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45082" stop="43820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44788" g_stop="44120" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="682"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E711845" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44788" e_stop="44120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTA</genome_strand>
        <mrna_strand>CGATTAACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223261" ref_strand="+" ref_description="SGN-E223261 [cLEL-14-I24](-)">
      <seq>ccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagtatgatgttttccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44844" stop="43820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44544" g_stop="44120" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="441"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E223261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44544" e_stop="44120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTA</genome_strand>
        <mrna_strand>CCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359421" ref_strand="+" ref_description="SGN-E359421 [cLHT-31-C22]">
      <seq>cattctctaataatataatctcacccattgcaatcttcaagagaaacaggactaacattaaacatagaagtcaacattaaacaagaaataaggtttaacagaccaacataaatgatcttaaactaccacattcatgcagatgttatctgcttattcaacagagagctttcggcgcttgtacttcaccattacttcccctttgacaccgacaaccatagcgttccagtcaatttcagggaaaggcgagatcagttcaaactcgaaatttctcagcaagtgactccatattgctttgatctgcagataagcaaatggttctccaagacagccatgtttgcctccaccaaaagaaatatatgagaatgctcctgcagccttatcttcttctctaccagggccgaacctatcagggtccgaagtatctggattcttgaagatatgcggcagcctgttttgcaaaagcaggtgatgttgcaacaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="43833" stop="44914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44133" g_stop="44614" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E359421" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44133" e_stop="44614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACTCTAATAATATAATCTTAGTCATTGCAATCTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAAACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTAATCTGCAGATAAGCAAATGGTTCTCCAAGACAACCATGTCTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCGTAAGTATCTGGATTCTTGAAGATATGTGGCAGCCTG-TTTGCAAAAGCAGGTGAGGTTGCAACGATAT</genome_strand>
        <mrna_strand>CATTCTCTAATAATATAATCTCACCCATTGCAATCTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAGACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTGATCTGCAGATAAGCAAATGGTTCTCCAAGACAGCCATGTTTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCCGAAGTATCTGGATTCTTGAAGATATGCGGCAGCCTGTTTTGCAAAAGCAGGTGATGTTGCAACAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225620" ref_strand="+" ref_description="SGN-E225620 [cLEL-17-J3](-)">
      <seq>acatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatccccaagattatattattagagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44874" stop="43835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44574" g_stop="44136" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="456"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E225620" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44574" e_stop="44136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGT</genome_strand>
        <mrna_strand>ACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATCCCCAAGATTATATTATTAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690762" ref_strand="+" ref_description="SGN-E690762 [LH_Ea04F16]">
      <seq>cccataaaggttttttaataatataatcttagtcattgcacttttcaagagaaacaggactaacattaaacatagaagtcaacattaaacaagaaataaggtttaacaaaccaacataaatgatcttaaactaccacattcatgcagatgttatctgcttattcaacagagagctttcggcgcttgtacttcaccattacttcccctttgacaccgacaaccatagcgttccagtcaatttcagggaaaggcgagatcagttcaaactcgaaatttctcagcaagtgactccatattgctttaatctgcagataagcaaatggttctccaagacagccatgtctgcctccaccaaaagaaatatatgagaatgctcctgcagccttatcttcttctctaccagggccgaacctatcagggtcgtaagtatctggattcttgaagatatgtggcagcctgtttgcaaaagcaggtgatgttgcaacaatatgtcccttgggaatgtcatactcttttccttctctggttgtaacactgaattcgctatgtgaactacgcagaagcattatcagtggaggatggagtctcagggcttcctttatgcatctatagaggacttccatctcggaaaggatatcgtgatcaaccttattcccgtgtttcttcatcagattcttctgttcatctacaacagcggacatgtacttgttgttggtgaggaggtatgaccctgtccaagtggaagtgatcgaactggtgtgctgcccagcgaaaagagcagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="43838" stop="45210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44138" g_stop="44910" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="786" r_length="773" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E690762" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44138" e_stop="44910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATAATATAATCTTAGTCATTGCAATCTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAAACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTAATCTGCAGATAAGCAAATGGTTCTCCAAGACAACCATGTCTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCGTAAGTATCTGGATTCTTGAAGATATGTGGCAGCCTGTTTGCAAAAGCAGGTGAGGTTGCAACGATATGTCCCTTGGGAATGTCATACTCTTTTCCTTCTCTGGTTGTAACACTGAATTCGCTATGTGAACTACGCAGAAGCATTATCAGTGGAGGATGGAGTCTGAGGGCTTCCTTTATGCATCTGTAGAGGACTTCCATCTCGGAAAGGATATCGTGATCAACCTTATTCCCGTGTTTCTTCATCAGATTCTTCTGTTCATCTACAACAGCCGACATGTACTTGTCGTTGGTGAGGAGGTATGACCCTGTCCAAGTGGAAGTGATCGAACTGGTGTGCTGCCCAGCGAAAAGAGCAGCAATC</genome_strand>
        <mrna_strand>TTTAATAATATAATCTTAGTCATTGCACTTTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAAACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTAATCTGCAGATAAGCAAATGGTTCTCCAAGACAGCCATGTCTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCGTAAGTATCTGGATTCTTGAAGATATGTGGCAGCCTGTTTGCAAAAGCAGGTGATGTTGCAACAATATGTCCCTTGGGAATGTCATACTCTTTTCCTTCTCTGGTTGTAACACTGAATTCGCTATGTGAACTACGCAGAAGCATTATCAGTGGAGGATGGAGTCTCAGGGCTTCCTTTATGCATCTATAGAGGACTTCCATCTCGGAAAGGATATCGTGATCAACCTTATTCCCGTGTTTCTTCATCAGATTCTTCTGTTCATCTACAACAGCGGACATGTACTTGTTGTTGGTGAGGAGGTATGACCCTGTCCAAGTGGAAGTGATCGAACTGGTGTGCTGCCCAGCGAAAAGAGCAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343358" ref_strand="+" ref_description="SGN-E343358 [cTOF-19-G17]">
      <seq>tatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattngaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44933" stop="43838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44633" g_stop="44138" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="529"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E343358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44633" e_stop="44138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGA</genome_strand>
        <mrna_strand>TATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTNGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225756" ref_strand="+" ref_description="SGN-E225756 [cLEL-17-J3](-)">
      <seq>agataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattagagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44814" stop="43835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44514" g_stop="44138" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="396"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E225756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44514" e_stop="44138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGA</genome_strand>
        <mrna_strand>AGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219407" ref_strand="+" ref_description="SGN-E219407 [cLEL-11-L10](-)">
      <seq>ctgcaggagcattctcatatatttcttttggtgaaggcagacatggttgtcttgaagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaccattgcaatgactaagattatattattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44806" stop="43838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44506" g_stop="44138" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="384"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E219407" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44506" e_stop="44138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGA</genome_strand>
        <mrna_strand>CTGCAGGAGCATTCTCATATATTTCTTTTGGTGAAGGCAGACATGGTTGTCTTGAAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGACCATTGCAATGACTAAGATTATATTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554687" ref_strand="-" ref_description="SGN-E554687 [cTSC-5-B23]">
      <seq>taaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagttacttacgaccctgataggtttggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatttgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaagattgcaatgactaagattatattattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45025" stop="43838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44725" g_stop="44141" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="604"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E554687" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44725" e_stop="44141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATT</genome_strand>
        <mrna_strand>TAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGTTACTTACGACCCTGATAGGTTTGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATTTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739499" ref_strand="+" ref_description="SGN-E739499 [LC17CH05]">
      <seq>cctatgcgctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgctttaatctgcagataagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44830" stop="43866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44153" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E739499" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGC-TT-ATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAA</genome_strand>
        <mrna_strand>CCTATGCGCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTTAATCTGCAGA-T-AAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738141" ref_strand="+" ref_description="SGN-E738141 [LC12CB09]">
      <seq>gttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgctttaatctgcagataagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44835" stop="43866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44535" g_stop="44153" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E738141" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44535" e_stop="44153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGC-TT-ATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAA</genome_strand>
        <mrna_strand>GTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTTAATCTGCAGA-T-AAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373607" ref_strand="+" ref_description="SGN-E373607 [TUS-33-G8]">
      <seq>ttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgactttctatgtttaatgttagtcctgtttctcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45070" stop="43866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44770" g_stop="44157" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E373607" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44770" e_stop="44157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGAC-TTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGA</genome_strand>
        <mrna_strand>TTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373606" ref_strand="+" ref_description="SGN-E373606 [TUS-33-G8](-)">
      <seq>gttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagaaaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattttcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45071" stop="43866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44771" g_stop="44158" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E373606" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44771" e_stop="44158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATG</genome_strand>
        <mrna_strand>GTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAAAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTTTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716132" ref_strand="+" ref_description="SGN-E716132 [FB16AG12]">
      <seq>ggggatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgtttaatgttagtcctgtttctcttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45062" stop="43866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44765" g_stop="44167" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="620"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E716132" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44765" e_stop="44167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAG</genome_strand>
        <mrna_strand>GGGGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305780" ref_strand="+" ref_description="SGN-E305780 [cLEX-14-O6]">
      <seq>ttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaaggggaagtaatggtgaagtacaagcgccgaaagctctctgttgaataagcagataacatctgcatgaatgtggtagtttaagatcatttatgttggtttgttaaaccttatttcttgtttaatgttgacttctatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45070" stop="43892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44770" g_stop="44192" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E305780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44770" e_stop="44192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTT</genome_strand>
        <mrna_strand>TTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702927" ref_strand="+" ref_description="SGN-E702927 [FA20AD03]">
      <seq>gtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacaacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtcggtgtcaaagggggagtaatggtgaagtacaagcgccgaaagctctctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45496" stop="43989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45196" g_stop="44289" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="908" r_length="908" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E702927" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45196" e_stop="44289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTT</genome_strand>
        <mrna_strand>GTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACAACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGGAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705899" ref_strand="+" ref_description="SGN-E705899 [FA28BG12]">
      <seq>gtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacaacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgctatggttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45502" stop="44040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45202" g_stop="44340" g_length="863"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E705899" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45202" e_stop="44340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTC</genome_strand>
        <mrna_strand>GTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACAACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238293" ref_strand="+" ref_description="SGN-E238293 [cLED-22-P20]">
      <seq>tcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaacgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45201" stop="44048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44901" g_stop="44348" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E238293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44901" e_stop="44348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTA</genome_strand>
        <mrna_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244668" ref_strand="+" ref_description="SGN-E244668 [cLED-38-M17]">
      <seq>tcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttggtggaggcagacatggttgtcttggagaaccatttgcttatctgcagattaaagcaatatggagtcacttgctgagaaatttcgagtttgaactgatctcgcctttccctgaaattgactggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45201" stop="44052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44901" g_stop="44352" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E244668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44901" e_stop="44352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAAC</genome_strand>
        <mrna_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240915" ref_strand="+" ref_description="SGN-E240915 [cLED-24-M21]">
      <seq>tcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattctcatatatttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45201" stop="44177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44901" g_stop="44477" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E240915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44901" e_stop="44477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTG</genome_strand>
        <mrna_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239677" ref_strand="+" ref_description="SGN-E239677 [cLED-33-O15]">
      <seq>tcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagatcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatccagatacttacgaccctgataggttcggccctggtagagaagaagataaggctgcaggagcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45201" stop="44192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44901" g_stop="44492" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E239677" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44901" e_stop="44492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCT</genome_strand>
        <mrna_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGATCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240623" ref_strand="+" ref_description="SGN-E240623 [cLED-21-D12]">
      <seq>ttttttcgctgggcagttcaccagttcgagcacttccacttggacagggtcataccttctcaccaacgacaagcacatgttggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggatgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcacactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccgagggacatatctgtgcaacctcacctgcttttgcaaacaggctgccacatatcttcaagaatgcagatacttacgaccctgataggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45201" stop="44233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44901" g_stop="44533" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E240623" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44901" e_stop="44533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTT</genome_strand>
        <mrna_strand>TTTTTTCGCTGGGCAGTTCACCAGTTCGAGCACTTCCACTTGGACAGGGTCATACCTTCTCACCAACGACAAGCACATGTTGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGATGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCACACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCGAGGGACATATCTGTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATGCAGATACTTACGACCCTGATAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239912" ref_strand="+" ref_description="SGN-E239912 [cLED-29-K11]">
      <seq>agatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacatatcgttgcaacctcacctgcttttgcaaacaggctgccacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45340" stop="44270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45040" g_stop="44570" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E239912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45040" e_stop="44570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATA</genome_strand>
        <mrna_strand>AGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281956" ref_strand="+" ref_description="SGN-E281956 [cLES-2-P6]">
      <seq>ccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaaccagagaaggaaaagagtatgacattcccaagggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45389" stop="44312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45089" g_stop="44612" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E281956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45089" e_stop="44612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATA</genome_strand>
        <mrna_strand>CCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710545" ref_strand="+" ref_description="SGN-E710545 [FA55DA09]">
      <seq>ccgatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacaacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgacatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattcagtgttacaacccgagaaggaaaagagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46516" stop="44331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46216" g_stop="46047" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="44631" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="821" r_length="651" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E710545" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46216" e_stop="46047"/>
          <exon e_start="45281" e_stop="44631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTAT</genome_strand>
        <mrna_strand>CCGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACAACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGACATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCCGAGAAGGAAAAGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240003" ref_strand="+" ref_description="SGN-E240003 [cLED-29-H14]">
      <seq>tcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttccgagatggaagtcctctacagatgcataaaggaagccctcagactccatcctccactgataatgcttctgcgtagttcacatagcgaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="45201" stop="44360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44901" g_stop="44660" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E240003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44901" e_stop="44660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCA</genome_strand>
        <mrna_strand>TCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699015" ref_strand="+" ref_description="SGN-E699015 [FA08BB09]">
      <seq>cggtttacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtacacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctcctcaccaacaacaagtacatgtcggctgttgtacatgaacagaagaatctgatgaacaaacacgggaataaggttgatcaccatatcctttccgagatggaagtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46517" stop="44436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46223" g_stop="46047" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="44736" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="723" r_length="546" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E699015" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46223" e_stop="46047"/>
          <exon e_start="45281" e_stop="44736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTC</genome_strand>
        <mrna_strand>CGGTTTACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTACACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACAACAAGTACATGTCGGCTGTTGTACATGAACAGAAGAATCTGATGAACAAACACGGGAATAAGGTTGATCACCATATCCTTTCCGAGATGGAAGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343942" ref_strand="+" ref_description="SGN-E343942 [cTOF-12-E17]">
      <seq>aacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaaatatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgatgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcatacctnctcaccaacgacaagtacatgtcggctgttgtagatgaacagaagaatctgatgaagaaacacgggaataaggttgatcacgatatcctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46518" stop="44451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46218" g_stop="46047" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="44751" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="703" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E343942" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46218" e_stop="46047"/>
          <exon e_start="45281" e_stop="44751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCC</genome_strand>
        <mrna_strand>AACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTNCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279279" ref_strand="+" ref_description="SGN-E279279 [cLEL-4-M16](-)">
      <seq>cttgtcgttggtgaggaggtatgacccctgtccaagtggaagtgaatcgaactggttgtgctgcccagcgaaaagagcagcaatcagaagacctgtgatctcaccctctgttgttggccgtccatctttgtactttgagtcaatgaagcattgtaacatatcattctctgccttgcctgtacgttttcgagaatttatgatgtttgcaaagatctctgctagcttcttcctggcattgtcacgtcggcgatgggctggaattggaaggtagggaaagataacactgatagggagcatcccattgtccaggtcatggaagagagcagacacatcatcaaagagtttattgcggacctcttctgggaacagacatctactagctgtcaatatgataagatgctccagttcatattttaggtctacttcacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="44529" stop="45556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44829" g_stop="45260" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E279279" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44829" e_stop="45260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCGTTGGTGAGGAGGTATGA-CCCTGTCCAAGTGGAAGTG-ATCGAACTGG-TGTGCTGCCCAGCGAAAAGAGCAGCAATCAGAAGACCTGTGATCTCACCCTCTGTTGTTGGCCGTCCATCTTTGTACTTTGAGTCAATGAAGCATTGTAACATATCATTCTCTGCCTTGCCTGTACGTTTTCGAGAATTTATGATGTTTGCAAAGATCTCTGCTAGCTTCTTCCTGGCATTGTCACGTCGGCGATGGGCTGGAATTGGAAGGTAGGGAAAGATAACACTGATAGGGAGCATCCCATTGTCCAGGTCATGGAAGAGAGCAGACACATCATCAAAGAGTTTATTGCGGACCTCTTCTCCCAACAGACATCTACTAGCTGTCAATATGATAAGATGCTCCAGTTCATATTTTAGGTCTACTTCACCACTCTC</genome_strand>
        <mrna_strand>CTTGTCGTTGGTGAGGAGGTATGACCCCTGTCCAAGTGGAAGTGAATCGAACTGGTTGTGCTGCCCAGCGAAAAGAGCAGCAATCAGAAGACCTGTGATCTCACCCTCTGTTGTTGGCCGTCCATCTTTGTACTTTGAGTCAATGAAGCATTGTAACATATCATTCTCTGCCTTGCCTGTACGTTTTCGAGAATTTATGATGTTTGCAAAGATCTCTGCTAGCTTCTTCCTGGCATTGTCACGTCGGCGATGGGCTGGAATTGGAAGGTAGGGAAAGATAACACTGATAGGGAGCATCCCATTGTCCAGGTCATGGAAGAGAGCAGACACATCATCAAAGAGTTTATTGCGGACCTCTTCTGGGAACAGACATCTACTAGCTGTCAATATGATAAGATGCTCCAGTTCATATTTTAGGTCTACTTCACCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700757" ref_strand="+" ref_description="SGN-E700757 [FA14AD01]">
      <seq>gcaaagctcatatctgcactaattatgcccagatctaagaagcgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcagcacaccagttcgatcacttccacttggacagggtcataccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46748" stop="44543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46448" g_stop="46047" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="44843" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="842" r_length="440" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E700757" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46448" e_stop="46047"/>
          <exon e_start="45281" e_stop="44843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATA-CCTCC</genome_strand>
        <mrna_strand>GCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAGCGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700306" ref_strand="+" ref_description="SGN-E700306 [FA12DA05]">
      <seq>aagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaagcgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgtacaggcaaggcagagaatgatatgttacaatgcttcattgactcaaagtacaaagatggacggccaacaacagagggtgagatcacaggtcttctgattgctgctcttttcgctgggcaacacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46793" stop="44580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46493" g_stop="46047" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="44880" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="849" r_length="402" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E700306" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46493" e_stop="46047"/>
          <exon e_start="45281" e_stop="44880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACC</genome_strand>
        <mrna_strand>AAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAGCGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAACACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269172" ref_strand="+" ref_description="SGN-E269172 [cLEI-16-M16]">
      <seq>aacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaaatatgaactggagcatcttatcatattcacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgatgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtggtatctttccctaccttccaattccagcccatcgtcgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcatagattctcgaaaacgtacaggcgaggcagagaatgatatgttacaatgcttcattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46504" stop="44663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46204" g_stop="46047" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="44963" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="477" r_length="319" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E269172" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46204" e_stop="46047"/>
          <exon e_start="45281" e_stop="44963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACT</genome_strand>
        <mrna_strand>AACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTCACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGGTATCTTTCCCTACCTTCCAATTCCAGCCCATCGTCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAGATTCTCGAAAACGTACAGGCGAGGCAGAGAATGATATGTTACAATGCTTCATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736847" ref_strand="+" ref_description="SGN-E736847 [LC07CB09]">
      <seq>agcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaagcgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatcataaattctcngaaacgtacaggcaaggcaaaaaatgatatgttacaatgcttcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48759" stop="44665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48459" g_stop="48378" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="562" r_length="480" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="44965" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="879" r_length="317" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E736847" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48459" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="44965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGA</genome_strand>
        <mrna_strand>AGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAGCGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCNGAAACGTACAGGCAAGGCAAAAAATGATATGTTACAATGCTTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700953" ref_strand="+" ref_description="SGN-E700953 [FA14CE06]">
      <seq>caaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaagcgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccangaagaagctagcagagatctttgcaaacatcataaattctcgaaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="44706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="567" r_length="480" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45006" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="843" r_length="276" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E700953" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGT</genome_strand>
        <mrna_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAGCGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCANGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706142" ref_strand="+" ref_description="SGN-E706142 [FA29AE09]">
      <seq>caaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaagcgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaagtatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgacgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgccaggaagaagctagcagagatctttgcaaacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="44723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="567" r_length="480" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45023" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="826" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E706142" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCA</genome_strand>
        <mrna_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAGCGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAGTATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGACGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336968" ref_strand="+" ref_description="SGN-E336968 [cTOE-5-N17]">
      <seq>agtctcgagttttttttttttttttttatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtaaacctaaaatatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgatgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttccctaccttccaattccagcccatcgccgacgtgacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="105123" stop="44758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46467" g_stop="46449" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.526"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46448" i_stop="46159" i_length="290">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46158" g_stop="46047" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="131" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45058" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="355" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E336968" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46467" e_stop="46449"/>
          <exon e_start="46158" e_stop="46047"/>
          <exon e_start="45281" e_stop="45058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGC</genome_strand>
        <mrna_strand>AGTCTCGAGTTTTTTTTTT..................................................................................................................................................................................................................................................................................................TTTTTTTTATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAAACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314074" ref_strand="+" ref_description="SGN-E314074 [cTOA-19-G20]">
      <seq>ccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaattgggtgagagtggtgaagtagacctaaaatatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgatgatgtgtctgctctcttccatgacctggacaatgggatgctccctatcagtgttatctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46720" stop="44797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46420" g_stop="46047" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="45097" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="559" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E314074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46420" e_stop="46047"/>
          <exon e_start="45281" e_stop="45097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCC</genome_strand>
        <mrna_strand>CCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATTGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270774" ref_strand="+" ref_description="SGN-E270774 [cLEM-6-N22]">
      <seq>actaattatgcccagatctaanaaacgtttggctccaatggtgaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttacacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtatacctaaaatatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgatgatgtgtctgctctcttccatgacctggacaatgggatgctccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46731" stop="44812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46431" g_stop="46047" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="45112" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="555" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E270774" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46431" e_stop="46047"/>
          <exon e_start="45281" e_stop="45112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTAT</genome_strand>
        <mrna_strand>ACTAATTATGCCCAGATCTAANAAACGTTTGGCTCCAATGGTGAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTACACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTATACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311034" ref_strand="+" ref_description="SGN-E311034 [cLEZ-17-H19]">
      <seq>tcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaaatatgaactggagcatcttatcatattgacagctagtagatgtctgttgggagaagaggtccgcaataaactctttgatgatgtgtctgctctcttccatgacctggacaatgggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46741" stop="44818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46441" g_stop="46047" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45281" g_stop="45118" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="559" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E311034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46441" e_stop="46047"/>
          <exon e_start="45281" e_stop="45118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCT</genome_strand>
        <mrna_strand>TCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250153" ref_strand="+" ref_description="SGN-E250153 [cLEG-11-G3]">
      <seq>tctcttgaaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatacaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttgattggtccagaagtttctgcacatttgttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggattgtgatgttgattatacaattaggcaggaacagctcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtaaacctaaaatatgaactggagcatcttatcatattgacagctagtagatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48720" stop="44893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48420" g_stop="48378" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="524" r_length="480" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45193" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="613" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E250153" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48420" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTG-AAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCT</genome_strand>
        <mrna_strand>TCTCTTGAAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATACAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTGATTGGTCCAGAAGTTTCTGCACATTTGTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGATTGTGATGTTGATTATACAATTAGGCAGGAACAGCTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAAACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327735" ref_strand="+" ref_description="SGN-E327735 [cTOC-20-G8]">
      <seq>agcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagaccntaaatatgaactggagcatcttatcatattgacagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48759" stop="44903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48459" g_stop="48378" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="562" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45203" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="641" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E327735" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48459" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTA</genome_strand>
        <mrna_strand>AGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCNTAAATATGAACTGGAGCATCTTATCATATTGACAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312729" ref_strand="+" ref_description="SGN-E312729 [cTOA-8-A10]">
      <seq>caaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcaaggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaagttctttactgaagctctcagagtcactaagttgaaaggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtagacctaaaatatgaactggagcatcttatcatattgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="44905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="567" r_length="480" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45205" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="644" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E312729" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGC</genome_strand>
        <mrna_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAAGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAAGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299609" ref_strand="+" ref_description="SGN-E299609 [cLEW-20-E12]">
      <seq>tccactatgactatcattattctctcttgaaaaaagaaattttcattgatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtaaacctaaaatatgaactggagcatcttatcatattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48742" stop="44908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48442" g_stop="48378" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="545" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45208" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="619" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E299609" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48442" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGAC</genome_strand>
        <mrna_strand>TCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTGATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAAACCTAAAATATGAACTGGAGCATCTTATCATATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330481" ref_strand="+" ref_description="SGN-E330481 [cTOD-4-D24]">
      <seq>aaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatacttctcgaaatggggtgagagtggtgaagtaaacctaaaatatgaactggagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48762" stop="44921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48462" g_stop="48378" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="565" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45281" g_stop="45221" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="626" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E330481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48462" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
          <exon e_start="45281" e_stop="45221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCCCAAAAACCTGTCTGGACCAAACATCAGTTGAAGATAAATTTTCAAAATCCGTGGCCAAACTAGCAAATGCTAGTTAAGATGGAGAAGAAATATGACAGATTGCTTTTATACTGTTTGTATAATACTTATAGACCTTGAATAATTGCAATTTGATATTGGGTTTGTTTTCTTCCTTTGACAAATGCAGGAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATC</genome_strand>
        <mrna_strand>AAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAAACCTAAAATATGAACTGGAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317864" ref_strand="+" ref_description="SGN-E317864 [cTOA-30-D14]">
      <seq>gcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggtatactaaaaaaaatctgttatcttttcttgaatttgattgatgacatttagagtttgtttatttattaatgtttgcttaagttttaagtcttttattacagtggactcatgtctgtgtgctctgattgtgtttcaagataatttgacctgtgttactgttattaaacgaagaaaatgtttatattggtcgccttagttgttaagataatgtcctcagagcttagaaatcttatgtttcttggactctccaaaaatgttgtcccacttgtgtctggatcctctaaaaatctactaactttggaggatccttcgagcaccggttgagtctttgagaagaggtggaaatatttgtttaaaggaactagcatttgcaacaccttttgtgtgaattaaccaaaaggggggcttcagttaatcacgcatgcactgtaagtttcggtttcaccatagattttgaagttgaaacttgaaaaattgagttattaaagtagtaatttttcgaacttgaatttgtgnttggacatgcgtttttgcttggaattttttaaacttttgtgagtgaaagcgaaatctctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46431" stop="45169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46131" g_stop="45469" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E317864" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46131" e_stop="45469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCG-TTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCC</genome_strand>
        <mrna_strand>GCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGNTTGGACATGCGTTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323599" ref_strand="+" ref_description="SGN-E323599 [cTOC-2-B20]">
      <seq>aaagcatatggggtgcgcctccactatgggtatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactgaagctctcagagtcactaagttgaagggctatgtagatcagatggttacagaagctgaggaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48761" stop="45740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48461" g_stop="48378" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46047" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="564" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E323599" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48461" e_stop="48378"/>
          <exon e_start="46526" e_stop="46047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG</genome_strand>
        <mrna_strand>AAAGCATATGGGGTGCGCCTCCACTATGGGTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310375" ref_strand="+" ref_description="SGN-E310375 [cTOA-10-A6]">
      <seq>cctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagaatttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgcgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcatgttctttactgaagctctcagagtcactaaattgaacggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48744" stop="45774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48444" g_stop="48378" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46074" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="520" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E310375" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48444" e_stop="48378"/>
          <exon e_start="46526" e_stop="46074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTAT</genome_strand>
        <mrna_strand>CCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGAATTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGCGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCATGTTCTTTACTGAAGCTCTCAGAGTCACTAAATTGAACGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306268" ref_strand="+" ref_description="SGN-E306268 [cLEX-13-A17]">
      <seq>atatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaattaggcaggaacagttcaggttctttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="46824" stop="45806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46524" g_stop="46106" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E306268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46524" e_stop="46106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTG</genome_strand>
        <mrna_strand>ATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313955" ref_strand="+" ref_description="SGN-E313955 [cTOA-19-A12]">
      <seq>atctctatatagttgagccaaaaaaaagacagtgaaacaaaaaggaaaatcctcaaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgttagcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagctagggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaagtttatcagttcaatgtgcctacctttggacctggagtggttttagatgttgattatacaattaggcaggaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48817" stop="45821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48517" g_stop="48378" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46121" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="546" r_length="406" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E313955" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48517" e_stop="48378"/>
          <exon e_start="46526" e_stop="46121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTATATAGTTGAGCCAAAAAAAAGAGAGTGAAAGAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGT</genome_strand>
        <mrna_strand>ATCTCTATATAGTTGAGCCAAAAAAAAGACAGTGAAACAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTAGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTAGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAAGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGAGTGGTTTTAGATGTTGATTATACAATTAGGCAGGAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337667" ref_strand="+" ref_description="SGN-E337667 [cTOE-17-F13]">
      <seq>aaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgattatacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48762" stop="45834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48462" g_stop="48378" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46134" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="478" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E337667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48462" e_stop="48378"/>
          <exon e_start="46526" e_stop="46134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATT</genome_strand>
        <mrna_strand>AAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315123" ref_strand="+" ref_description="SGN-E315123 [cTOA-24-A12]">
      <seq>atcctcaaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtggtttttgatgttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48769" stop="45841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48469" g_stop="48378" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46141" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="478" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E315123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48469" e_stop="48378"/>
          <exon e_start="46526" e_stop="46141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTA</genome_strand>
        <mrna_strand>ATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203150" ref_strand="+" ref_description="SGN-E203150 [cLEB-3-D8]">
      <seq>gcacgagaaatcctcaaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttggacctggtgtgggttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48775" stop="45848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48478" g_stop="48378" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46148" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="480" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E203150" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48478" e_stop="48378"/>
          <exon e_start="46526" e_stop="46148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATG</genome_strand>
        <mrna_strand>GCACGAGAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGGTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338278" ref_strand="+" ref_description="SGN-E338278 [cTOE-13-K8]">
      <seq>tggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48753" stop="45867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48453" g_stop="48378" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46167" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="436" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E338278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48453" e_stop="48378"/>
          <exon e_start="46526" e_stop="46167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGA</genome_strand>
        <mrna_strand>TGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292458" ref_strand="+" ref_description="SGN-E292458 [cLET-1-P18]">
      <seq>caaaaagcagaaggggtgcncctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcacggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaagcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="45869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46169" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="445" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E292458" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTG</genome_strand>
        <mrna_strand>CAAAAAGCAGAAGGGGTGCNCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAAGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296621" ref_strand="+" ref_description="SGN-E296621 [cLET-39-J16]">
      <seq>caaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatcttagccaacaagaggtttatcagttcaatgtgcctacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="45869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46169" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="445" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E296621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTG</genome_strand>
        <mrna_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277246" ref_strand="-" ref_description="SGN-E277246 [cLEL-3-E8](-)">
      <seq>gcacgagaaatcctcaaaaagcaaatggtgtgcgcctccactatgactatcattatggctctcttgaaaaaagaaattttcatcaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttcaaagccccagaaacagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48775" stop="45911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48478" g_stop="48378" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46211" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="418" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E277246" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277246" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48478" e_stop="48378"/>
          <exon e_start="46526" e_stop="46211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTAT-TCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATC</genome_strand>
        <mrna_strand>GCACGAGAAATCCTCAAAAAGCAAATGGTGTGCGCCTCCACTATGACTATCATTATGGCTCTCTTGAAAAAAGAAATTTTCATCAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338833" ref_strand="+" ref_description="SGN-E338833 [cTOE-21-E1]">
      <seq>gggttttcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggtccagaagtttctgcacattttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48744" stop="45930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48451" g_stop="48378" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46230" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="371" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E338833" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48451" e_stop="48378"/>
          <exon e_start="46526" e_stop="46230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTC</genome_strand>
        <mrna_strand>GGGTTTTCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294914" ref_strand="-" ref_description="SGN-E294914 [cLET-17-K21](-)">
      <seq>caaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="45954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46254" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="360" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E294914" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294914" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGT</genome_strand>
        <mrna_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294913" ref_strand="+" ref_description="SGN-E294913 [cLET-17-K21]">
      <seq>caaaaagcaaatggggtgcgcctccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaatttgttgaacaagaacatcacattcttcattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48764" stop="45954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48378" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46254" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="360" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E294913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48378"/>
          <exon e_start="46526" e_stop="46254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGT</genome_strand>
        <mrna_strand>CAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300142" ref_strand="+" ref_description="SGN-E300142 [cLEW-11-P21]">
      <seq>tccactatgactatcattattctctcttgaaaaaagaaattttcattaatttttctttaattcagggatatttttcagctatggagttaggtgacaacaagattttgaatgtggggttgcttttagttgcaacccttttggtagcaaagctcatatctgcactaattatgcccagatctaagaaacgtttgcctccagtggttaaggcatggcctattgttggtgggttgatccgttttcttaaagggccagttgtgatgcttagacaggagtatccaaagcttgggagtgtgtttactctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="48742" stop="45988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48442" g_stop="48378" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46288" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="304" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E300142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48442" e_stop="48378"/>
          <exon e_start="46526" e_stop="46288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAGGTACCTCTCTTTCTCTTTTCTGTTTCTTGATTTGTTTTGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTGAGAAATTGGAGTTTGTGTGTGTGTGGAAATGGTGGGAATTCGAACCCTCACTAATAAGCTCACTAATAAGGTGAAAGTTCGTATTGTTAATTAGCTGAGTTATTAAGATTCTTATTTAAAAGTTTTGATTTTTTCTTGAATTGCATGTTGTTTGTTTTAGTTATGGAGTTAAGTGATAATAAGATTCACCATTACTCTCTCTCTCTCTCTTTTTGGTTCTTAAATTTGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAGAAATTGGTGTATATTGGGGGGGGGGGGGGGGGGGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAGGGGGGGGGGGGAATAGAAGGTGGGAATTTGAACCCATGGGAATTTGAACCCACACTAATAAGGTGAAAGTTTGTATTTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATTTTTTTTTGTATTGCATGTTTTTTTTAGCTATGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGCTAAAGTTTCAATCTTTTGAGAAGTTGGTGTATGGAGGTTGGGGGGAATGGAAAAAGAGGGGGGGGGGGGGGGATTAGAATGTGGGAATTCGAACCCTCAGTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTTTCATTTTAAAAGTTTCAATCTTTTCTTGTATTGCATGTTTTTTTAGCTGTGGAGTTAAGTGCTTGATATGTTTGGAATCTCAGATCTTTATGTTAAAGTTCCAATCTTTTGAAAAATTGGTGTATGGGGGGCTGGGGGAATGGAAAAGGAGGGGGGGGGGGGGGATTAGAAGGTGGGAATTCGAACTCTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTAGTAAGATTTTCATTTTAAAATTTTCAATCTTTTCTTGAATTGCATGTTTTTTTAGCTATGGAGTTAAGTGCTTGATCTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTAAGAATTGGTGTATGGGGGTGGGGGAATGGAAATGGGAAGGTGGAAATTCGAACCTTCACTAATAAGGTGAAAGTTCGTATTGTTAATCAACTGAGTTATTAAGATTCTTATTTTAAAAGTTTTAATCTTTTCTTAATTGCATGGTTTTTTTAGCTATGGAGTTAAGTGATAACAAGATTCACCATTACTCTCTCTCTTATTGTTTGGAATCTCAGATCTTTATGTTAAAGTTTCAATCTTTTTTAAAATTGGTGTATGGGGGTGGGGGGAATGGAAATGGGGAGGGGAATAGAAGGTGGGAATTCGAACTGTCACGAATAAGGTGAAAGTTCGTATCGTTAATCAACTGACTTATTAAGATTGCCATTTTAAAAGTTTTAATCTTTTCTTGAATTGCATGTTTTTTTTAAAAAAGCTATGGAGTTAAGGGATAACAAGATTCACCATTTTACTCTCTTTTTTTTTTCTCGATTTGTTTGGAATATCAGATCTTTATGTTAACATTTCAATGTCTTGATAAAAAGAATGTAGGGTTAGGGTTAGGGGTAGGGGTTGGGGTAGGGGAAGGGAATGAGATTACGAGGTGAAAGTTCATATAGTCAACAACTGAAATGTCAAGATTCCCATGTTAAAGTTTCAATCTTTTCTTAAATTGCAGGGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAA</genome_strand>
        <mrna_strand>TCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308654" ref_strand="+" ref_description="SGN-E308654 [cLEZ-13-I11]">
      <seq>ttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactggaaggtctattcacgtaatgactttcgaagtgggagcagttctcgaggacataaaatggcaagcccctgtatattgtttcgacaaaaaacaggttcaagatcaccctgcatcagacaacgatattctggaaattggctcgaaaggtactttaagagagttcatatagccgcgcaatttacgtaaatagctcagctagatgttcttagtaatgtaaaagtatttgccttgtcttgctgcctctgcatcagtttcatctccttatgtattgaaaaacagttgatgccatcagtgttgtgtattgcaataacctatgttgctcgaactgttcataaatggtgatggggtatgtcggatcctccaacagtagtacagttttagaggatcttgcacatatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="56992" stop="54029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56692" g_stop="56590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54728" g_stop="54329" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="503" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E308654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56692" e_stop="56590"/>
          <exon e_start="54728" e_stop="54329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTGGTACTCTTCATCCCCTCCACCCCTCTTTGTTTAATCTTCCATTTTATGACGTTTGGACATGAATCGTTTGATATTTGAAAAGAATGTAGTATGAAGCTAAGTTGAAAAAGGGCATTTGAGGTTGTATTAGAAGAACACAATCGACGTTTCATAAGTGAAAACTTGAAGAACTCCTAAAAACTATTTTTCAACTTTGATTTCCATATTTCATGTTTGAAGTTGAAATAATGAACAAATTTGATAAACGCTAAATTGAAATAATCGCCAAATAAAGGAGGTGTAGTTGCATCCTTGCTACTCTCTCCGTTTTGGGAAGAGGCTTTGTTGGTGTAGTTACTTGTTTGCTACTCTCTCCGTTCCATTTTGGGCCTTGATTTGGCACAAAGTTTAAGAAAGTGAAGGAGATATTTAAATCTTGTAGTGTTAAACTAAAGACGTGAAAAATATATTAAAATAGCATTTGAATTTATGGTCTTAAGCATGACGTGGGAGATTGAAATTAAAGAGTTACTGCCGATAGAAAGTGGCATACGTTGTGAAACAAACTAAAAAGTAAGAGACATGAATTGAAATAGAGGAATGTTATTTCTTATGAAGCCTTTGGAAGGAGAAGTGTTTGAAGCTTTTCTATCGAGTTATCATGAAGTTCAGCATGTTCAGGGGCTCGAGTAAACGTTAAGACTCATTAAGTTGTTTGTGGTCATCGACAAGTTCAATCACATTACTTGAAAATTCAAGCTTTTCATGATTCTTAGTTCTTCTATTTCCTCCTACTATGCAGTCATTGTTCTATTAGGCTAGATGTATGCAGCTCCTGTTACTGCTTTCACTGAAGTAGACGCTTCCCTTAAAGTAGTCCGTCAACTGAAACTTGTCTTGTTGTGATATTGTTACATTCTTTTCATCCTATCAAGAAGAGACGATAACTGTCCAATTCTTCCCCATCCCCACCAACAAATTAAGGAACGACGAAAGCTGGGGGATAACTTGTTAAATTGCTTGGAATCAAACATTAACTTGCTCCTTTCTTATTGACATACATATTAAAGTAGAACCTCTCTATAATGACGTCATTTGATTGGATACTGTTTGGCTGCTACAGTGAAATGATGTTATAGAGAACACATAACATAACATAAGATGAAAATTTGTTTTAGCACATCAACATAAAAGGTATTATTATATCCCTTAATTTGTTTGTGCAGCGTATGAGTTCGTTAGTCTTCTCTATCTCTGCTTTAGTTGTTCCTAAGTATCAAAAGTGGCTAAAGTTTTGCTGGTGAATTTGCTATAACTTGTAGTTGGAATTTAGCTGAAAAGCTACTGGGGGCCATTGCTCACAGCTACTGTACAAACGATATTCCTTTTTGTTATTCGAAATGATAACATATTTTTGCACATATATATAGACATCAGCCTTGTTACATCAACCTTCTTCTTGTTACGAGAAGTAAGAACACGAGTTAATGAAATGTTTCTTGTATCTTAACTCAATCAGCTCTAGTATTCGTAACCAAATCCCATAAAGTCATAGCTTCATTCAGCTATAAATGAACTAACAGACCAACGGCATGGATTAGTCACTAGGCGTAACCAGACAATAATATTTATCTGCATTTGATGGAACTTCTTATTAAAGGCCAATATGAGTTGAATAAATCTGATCTTTTTACGCTAAACGTAAGATCTAGTCTATGTACATCCTGACATATAAAGCTCAACTAGCTTTCTGAAGTTCTTCGTGTATGTACAGCTACCTAACGTGTTCTGGATAGTTGAGTCCTTTTCGATTGATCTCATTGTTTCTATACTCTTTATAGATAATGCTCGTGTTACAGGATTAACAAGTTTGATGTTGCAGGAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTCTTGCTGCCTCTGCATCAGTTTCATCTCCTTATGTATTGAAAAACAGTTGATGCCATCAGTGTTGTGTATTGCAATAACCTATGTTGCTCGAACTGTTCATAAATGGTGATGGGGTATGTCGGATCCTCCAACAGTAGTACAGTTTTAGAGGATCTTGCACATATGTGAC</genome_strand>
        <mrna_strand>TTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTCTTGCTGCCTCTGCATCAGTTTCATCTCCTTATGTATTGAAAAACAGTTGATGCCATCAGTGTTGTGTATTGCAATAACCTATGTTGCTCGAACTGTTCATAAATGGTGATGGGGTATGTCGGATCCTCCAACAGTAGTACAGTTTTAGAGGATCTTGCACATATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722875" ref_strand="+" ref_description="SGN-E722875 [FC18CD08]">
      <seq>gacaaccatccaaagagagtgtcacttaaaaactacacatttttccccttctttgagcctttatcttctccacagagagcaaatttacaaccgccatcgcaaaatttcgaggaaatttcaggtcgagtatgaagaagagtacggtgtcgccgacgactgtactattcgttgttgccgcaatactaatttcttactactccgatgtctcgtcggcaaaatcagattcagacccaacgccggccccatggcctcatcaattccactcgatactgttcgtcaatttcagcggatctctaagcctaatcgatctctggtacgattggaccaatggccgcaatttcaacatcatacaagaccagctaggtgagcttctctatgatctcgaatggaacaatggcactgtgttccgctacactctagacgatggtaagaagaaatgcagttcagcgctggttgatgttggtattcttcgaccaaattggcttgacggagctacttatcttggtcaacagttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactggaaggtctattcacgtaatgactttcgaagtgggagcagttctcgaggacataaaatggcaagcccctgtatattgtttcgacaaaaaacaggttcaagatcaccctgcatcagacaacgatattctggaaattggctcgaaaggtactttaagagagttcatatagccgcgcaatttacgtaaatagctcagctagatgttcttagtaatgtaaaagtatttgccttgttttgctgcctctgcatcaatttcatctccttatgtattgaaaaaacgttgatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="58717" stop="54143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58418" g_stop="58056" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56841" g_stop="56590" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="615" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54728" g_stop="54443" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="901" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E722875" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58418" e_stop="58056"/>
          <exon e_start="56841" e_stop="56590"/>
          <exon e_start="54728" e_stop="54443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACCATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAGGTAAGTCGGGGCGGAGACGGATTTAGAATTTTAAGTTTTATCGGTACAATTTTTTAGGGCTTGTTTGGGTTGAAGAAAAGTTAGGTTGGTATTTTTATCATTTTATCTCGGAATAATTAATCTCGATATTACTATTCATCTTTTTTGTATTCTCCGTCCGATATTATTTGTCATATTTCTATTTTTAGAGTCAAATTATAAAATCTTTGACTAACATTTTAAGATGTATTTTTCTGCAAAAAAAATTGCAATTTATAGTATTTTTCATATAGTTTTAGAATATATAATTTTTTTGTTTAAAATATCGAATTAATGAGATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAAAAATTTCGGACGAAGGAAATATTAATTACTAATATTTTTATAACTTATCTCGTAATTAATCATTAAGAAAAAGGATAAGACATTATTACATTTTTTGTTTCGTGACTATTTATGCTTGTTCATCATACCAAACGAGCCTAAGTATTTAAATTTATGTGATATAATTTGATTTAGATATAAAATTTAAGGAAAAAAACATATTTTGGAAAATTTGTAGTCTAAAATATTTTTTGATAATTTATGTGATTGTAAATTATTTTATTAAAATTGTTAGAAAAAATTAATTATTTTATTAAGAGTAAAAGTAATTTTGAAGTTAAATTGTTTTCACTTATAGAAATTTGACATTTTTCAAGGGACGGACTAAAAAAAGAATTTGTGTCACATAAATTGATATAGACAGAGTAGTATTGAACGTGTTACATCTTTATATTTATTATCATATAAAATATATTTATTATTATAGTGGAATTTAATGTATGTATTTATATGTTTGCACCAATAGTACTGGGTTTAGATGAATCTGATATGAAAGACTACGTCTCATTTGTCTATGGATTTGACATAATTCAATAGCTTAAAGTTAAATTTTATGTCTATGTCTCTCTCCATCTCGTTACTTTTTGCTTATCGAGAGTCAATATTGTACCTTCGAAGATCATTATGATATCTTAATTAAAATCTGGATATTCAGTAGCTACATAGAAAGTATTATAAGTTGTAATATTTCTATATATCACATATATTGGTACAAAGAGAGTATTATGTATGGATAATTTGTCAAGATGCTTTTATAGGATCCTCGAAATTAATTCAAAATTCTAGCTTCGCTTTTGTAGGTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTGGTACTCTTCATCCCCTCCACCCCTCTTTGTTTAATCTTCCATTTTATGACGTTTGGACATGAATCGTTTGATATTTGAAAAGAATGTAGTATGAAGCTAAGTTGAAAAAGGGCATTTGAGGTTGTATTAGAAGAACACAATCGACGTTTCATAAGTGAAAACTTGAAGAACTCCTAAAAACTATTTTTCAACTTTGATTTCCATATTTCATGTTTGAAGTTGAAATAATGAACAAATTTGATAAACGCTAAATTGAAATAATCGCCAAATAAAGGAGGTGTAGTTGCATCCTTGCTACTCTCTCCGTTTTGGGAAGAGGCTTTGTTGGTGTAGTTACTTGTTTGCTACTCTCTCCGTTCCATTTTGGGCCTTGATTTGGCACAAAGTTTAAGAAAGTGAAGGAGATATTTAAATCTTGTAGTGTTAAACTAAAGACGTGAAAAATATATTAAAATAGCATTTGAATTTATGGTCTTAAGCATGACGTGGGAGATTGAAATTAAAGAGTTACTGCCGATAGAAAGTGGCATACGTTGTGAAACAAACTAAAAAGTAAGAGACATGAATTGAAATAGAGGAATGTTATTTCTTATGAAGCCTTTGGAAGGAGAAGTGTTTGAAGCTTTTCTATCGAGTTATCATGAAGTTCAGCATGTTCAGGGGCTCGAGTAAACGTTAAGACTCATTAAGTTGTTTGTGGTCATCGACAAGTTCAATCACATTACTTGAAAATTCAAGCTTTTCATGATTCTTAGTTCTTCTATTTCCTCCTACTATGCAGTCATTGTTCTATTAGGCTAGATGTATGCAGCTCCTGTTACTGCTTTCACTGAAGTAGACGCTTCCCTTAAAGTAGTCCGTCAACTGAAACTTGTCTTGTTGTGATATTGTTACATTCTTTTCATCCTATCAAGAAGAGACGATAACTGTCCAATTCTTCCCCATCCCCACCAACAAATTAAGGAACGACGAAAGCTGGGGGATAACTTGTTAAATTGCTTGGAATCAAACATTAACTTGCTCCTTTCTTATTGACATACATATTAAAGTAGAACCTCTCTATAATGACGTCATTTGATTGGATACTGTTTGGCTGCTACAGTGAAATGATGTTATAGAGAACACATAACATAACATAAGATGAAAATTTGTTTTAGCACATCAACATAAAAGGTATTATTATATCCCTTAATTTGTTTGTGCAGCGTATGAGTTCGTTAGTCTTCTCTATCTCTGCTTTAGTTGTTCCTAAGTATCAAAAGTGGCTAAAGTTTTGCTGGTGAATTTGCTATAACTTGTAGTTGGAATTTAGCTGAAAAGCTACTGGGGGCCATTGCTCACAGCTACTGTACAAACGATATTCCTTTTTGTTATTCGAAATGATAACATATTTTTGCACATATATATAGACATCAGCCTTGTTACATCAACCTTCTTCTTGTTACGAGAAGTAAGAACACGAGTTAATGAAATGTTTCTTGTATCTTAACTCAATCAGCTCTAGTATTCGTAACCAAATCCCATAAAGTCATAGCTTCATTCAGCTATAAATGAACTAACAGACCAACGGCATGGATTAGTCACTAGGCGTAACCAGACAATAATATTTATCTGCATTTGATGGAACTTCTTATTAAAGGCCAATATGAGTTGAATAAATCTGATCTTTTTACGCTAAACGTAAGATCTAGTCTATGTACATCCTGACATATAAAGCTCAACTAGCTTTCTGAAGTTCTTCGTGTATGTACAGCTACCTAACGTGTTCTGGATAGTTGAGTCCTTTTCGATTGATCTCATTGTTTCTATACTCTTTATAGATAATGCTCGTGTTACAGGATTAACAAGTTTGATGTTGCAGGAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTCTTGCTGCCTCTGCATCAGTTTCATCTCCTTATGTATTGAAAAACAGTTGATGCCA</genome_strand>
        <mrna_strand>GACAACCATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGACTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCCCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTTTTGCTGCCTCTGCATCAATTTCATCTCCTTATGTATTGAAAAAACGTTGATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721043" ref_strand="+" ref_description="SGN-E721043 [FC12CD12]">
      <seq>gggcgattggcggccaatcggccgaattgacaccatccaaagagagtgtcacttaaaaactacacatttttccccttctttgagcctttatcttctccacagagagcaaatttacaaccgccatcgcaaaatttcgaggaaatttcaggtcgagtatgaagaagagtacggtgtcgccgacgactgtactattcgttgttgccgcaatactaatttcttactactccgatgtctcgtcggcaaaatcagattcagacccaacgccggccccatggcctcatcaattccactcgatactgttcgtcaatttcagcggatctctaagcctaatcgatctctggtacgattggaccaatggccgcaatttcaacatcatacaagaccagctaggtgagcttctctatgatctcgaatggaacaatggcactgtgttccgctacactctagacgatggtaagaagaaatgcagttcagcgctggttgatgttggtattcttcgaccaaattggcttgacggagctacttatcttggtcaacagttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactggaaggtctattcacgtaatgactttcgaagtgggagcagttctcgaggacataaaatggcaagcccctgtatattgtttcgacaaaaaacaggttcaagatcaccctgcatcagacaacgatattctggaaattggctcgaaaggtactttaagagagttcatatagccgcgcaatttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="58726" stop="54248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58412" g_stop="58056" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="390" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56841" g_stop="56590" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="642" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54728" g_stop="54548" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="823" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E721043" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58412" e_stop="58056"/>
          <exon e_start="56841" e_stop="56590"/>
          <exon e_start="54728" e_stop="54548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAGGTAAGTCGGGGCGGAGACGGATTTAGAATTTTAAGTTTTATCGGTACAATTTTTTAGGGCTTGTTTGGGTTGAAGAAAAGTTAGGTTGGTATTTTTATCATTTTATCTCGGAATAATTAATCTCGATATTACTATTCATCTTTTTTGTATTCTCCGTCCGATATTATTTGTCATATTTCTATTTTTAGAGTCAAATTATAAAATCTTTGACTAACATTTTAAGATGTATTTTTCTGCAAAAAAAATTGCAATTTATAGTATTTTTCATATAGTTTTAGAATATATAATTTTTTTGTTTAAAATATCGAATTAATGAGATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAAAAATTTCGGACGAAGGAAATATTAATTACTAATATTTTTATAACTTATCTCGTAATTAATCATTAAGAAAAAGGATAAGACATTATTACATTTTTTGTTTCGTGACTATTTATGCTTGTTCATCATACCAAACGAGCCTAAGTATTTAAATTTATGTGATATAATTTGATTTAGATATAAAATTTAAGGAAAAAAACATATTTTGGAAAATTTGTAGTCTAAAATATTTTTTGATAATTTATGTGATTGTAAATTATTTTATTAAAATTGTTAGAAAAAATTAATTATTTTATTAAGAGTAAAAGTAATTTTGAAGTTAAATTGTTTTCACTTATAGAAATTTGACATTTTTCAAGGGACGGACTAAAAAAAGAATTTGTGTCACATAAATTGATATAGACAGAGTAGTATTGAACGTGTTACATCTTTATATTTATTATCATATAAAATATATTTATTATTATAGTGGAATTTAATGTATGTATTTATATGTTTGCACCAATAGTACTGGGTTTAGATGAATCTGATATGAAAGACTACGTCTCATTTGTCTATGGATTTGACATAATTCAATAGCTTAAAGTTAAATTTTATGTCTATGTCTCTCTCCATCTCGTTACTTTTTGCTTATCGAGAGTCAATATTGTACCTTCGAAGATCATTATGATATCTTAATTAAAATCTGGATATTCAGTAGCTACATAGAAAGTATTATAAGTTGTAATATTTCTATATATCACATATATTGGTACAAAGAGAGTATTATGTATGGATAATTTGTCAAGATGCTTTTATAGGATCCTCGAAATTAATTCAAAATTCTAGCTTCGCTTTTGTAGGTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTGGTACTCTTCATCCCCTCCACCCCTCTTTGTTTAATCTTCCATTTTATGACGTTTGGACATGAATCGTTTGATATTTGAAAAGAATGTAGTATGAAGCTAAGTTGAAAAAGGGCATTTGAGGTTGTATTAGAAGAACACAATCGACGTTTCATAAGTGAAAACTTGAAGAACTCCTAAAAACTATTTTTCAACTTTGATTTCCATATTTCATGTTTGAAGTTGAAATAATGAACAAATTTGATAAACGCTAAATTGAAATAATCGCCAAATAAAGGAGGTGTAGTTGCATCCTTGCTACTCTCTCCGTTTTGGGAAGAGGCTTTGTTGGTGTAGTTACTTGTTTGCTACTCTCTCCGTTCCATTTTGGGCCTTGATTTGGCACAAAGTTTAAGAAAGTGAAGGAGATATTTAAATCTTGTAGTGTTAAACTAAAGACGTGAAAAATATATTAAAATAGCATTTGAATTTATGGTCTTAAGCATGACGTGGGAGATTGAAATTAAAGAGTTACTGCCGATAGAAAGTGGCATACGTTGTGAAACAAACTAAAAAGTAAGAGACATGAATTGAAATAGAGGAATGTTATTTCTTATGAAGCCTTTGGAAGGAGAAGTGTTTGAAGCTTTTCTATCGAGTTATCATGAAGTTCAGCATGTTCAGGGGCTCGAGTAAACGTTAAGACTCATTAAGTTGTTTGTGGTCATCGACAAGTTCAATCACATTACTTGAAAATTCAAGCTTTTCATGATTCTTAGTTCTTCTATTTCCTCCTACTATGCAGTCATTGTTCTATTAGGCTAGATGTATGCAGCTCCTGTTACTGCTTTCACTGAAGTAGACGCTTCCCTTAAAGTAGTCCGTCAACTGAAACTTGTCTTGTTGTGATATTGTTACATTCTTTTCATCCTATCAAGAAGAGACGATAACTGTCCAATTCTTCCCCATCCCCACCAACAAATTAAGGAACGACGAAAGCTGGGGGATAACTTGTTAAATTGCTTGGAATCAAACATTAACTTGCTCCTTTCTTATTGACATACATATTAAAGTAGAACCTCTCTATAATGACGTCATTTGATTGGATACTGTTTGGCTGCTACAGTGAAATGATGTTATAGAGAACACATAACATAACATAAGATGAAAATTTGTTTTAGCACATCAACATAAAAGGTATTATTATATCCCTTAATTTGTTTGTGCAGCGTATGAGTTCGTTAGTCTTCTCTATCTCTGCTTTAGTTGTTCCTAAGTATCAAAAGTGGCTAAAGTTTTGCTGGTGAATTTGCTATAACTTGTAGTTGGAATTTAGCTGAAAAGCTACTGGGGGCCATTGCTCACAGCTACTGTACAAACGATATTCCTTTTTGTTATTCGAAATGATAACATATTTTTGCACATATATATAGACATCAGCCTTGTTACATCAACCTTCTTCTTGTTACGAGAAGTAAGAACACGAGTTAATGAAATGTTTCTTGTATCTTAACTCAATCAGCTCTAGTATTCGTAACCAAATCCCATAAAGTCATAGCTTCATTCAGCTATAAATGAACTAACAGACCAACGGCATGGATTAGTCACTAGGCGTAACCAGACAATAATATTTATCTGCATTTGATGGAACTTCTTATTAAAGGCCAATATGAGTTGAATAAATCTGATCTTTTTACGCTAAACGTAAGATCTAGTCTATGTACATCCTGACATATAAAGCTCAACTAGCTTTCTGAAGTTCTTCGTGTATGTACAGCTACCTAACGTGTTCTGGATAGTTGAGTCCTTTTCGATTGATCTCATTGTTTCTATACTCTTTATAGATAATGCTCGTGTTACAGGATTAACAAGTTTGATGTTGCAGGAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACG</genome_strand>
        <mrna_strand>CATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGACTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCCCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699924" ref_strand="+" ref_description="SGN-E699924 [FA11CD10]">
      <seq>agagagtgtcacttaaaaactacacatttttccccttctttgagcctttatcttctccacagagagcaaatttacaaccgccatcgcaaaatttcgaggaaatttcaggtcgagtatgaagaagagtacggtgtcgccgacgactgtactattcgttgttgccgcaatactaatttcttactactccgatgtctcgtcggcaaaatcagattcagacccaacgccggccccatggcctcatcaattccactcgatactgttcgtcaatttcagcggatctctaagcctaatcgatctctggtacgattggaccaatggccgcaatttcaacatcatacaagaccagctaggtgagcttctctatgatctcgaatggaacaatggcactgtgttccgctacactctagacgatggtaagaagaaatgcagttcagcgctggttgatgttggtattcttcgaccaaattggcttgacggagctacttatcttggtcaacagttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactggaaggtctattcacgtaatgactttcgaagtgggagcagttctcgaggacataaaatggcaagcccctgtatattgtttcgacaaaaaacaggttcaagatcaccctgcatcagacaacgatattctggaaattggctcgaaaggtactttaagagagttcatataaccgcgcaatttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="58705" stop="54248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58405" g_stop="58056" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56841" g_stop="56590" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="602" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54728" g_stop="54548" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="783" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E699924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58405" e_stop="58056"/>
          <exon e_start="56841" e_stop="56590"/>
          <exon e_start="54728" e_stop="54548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAGGTAAGTCGGGGCGGAGACGGATTTAGAATTTTAAGTTTTATCGGTACAATTTTTTAGGGCTTGTTTGGGTTGAAGAAAAGTTAGGTTGGTATTTTTATCATTTTATCTCGGAATAATTAATCTCGATATTACTATTCATCTTTTTTGTATTCTCCGTCCGATATTATTTGTCATATTTCTATTTTTAGAGTCAAATTATAAAATCTTTGACTAACATTTTAAGATGTATTTTTCTGCAAAAAAAATTGCAATTTATAGTATTTTTCATATAGTTTTAGAATATATAATTTTTTTGTTTAAAATATCGAATTAATGAGATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAAAAATTTCGGACGAAGGAAATATTAATTACTAATATTTTTATAACTTATCTCGTAATTAATCATTAAGAAAAAGGATAAGACATTATTACATTTTTTGTTTCGTGACTATTTATGCTTGTTCATCATACCAAACGAGCCTAAGTATTTAAATTTATGTGATATAATTTGATTTAGATATAAAATTTAAGGAAAAAAACATATTTTGGAAAATTTGTAGTCTAAAATATTTTTTGATAATTTATGTGATTGTAAATTATTTTATTAAAATTGTTAGAAAAAATTAATTATTTTATTAAGAGTAAAAGTAATTTTGAAGTTAAATTGTTTTCACTTATAGAAATTTGACATTTTTCAAGGGACGGACTAAAAAAAGAATTTGTGTCACATAAATTGATATAGACAGAGTAGTATTGAACGTGTTACATCTTTATATTTATTATCATATAAAATATATTTATTATTATAGTGGAATTTAATGTATGTATTTATATGTTTGCACCAATAGTACTGGGTTTAGATGAATCTGATATGAAAGACTACGTCTCATTTGTCTATGGATTTGACATAATTCAATAGCTTAAAGTTAAATTTTATGTCTATGTCTCTCTCCATCTCGTTACTTTTTGCTTATCGAGAGTCAATATTGTACCTTCGAAGATCATTATGATATCTTAATTAAAATCTGGATATTCAGTAGCTACATAGAAAGTATTATAAGTTGTAATATTTCTATATATCACATATATTGGTACAAAGAGAGTATTATGTATGGATAATTTGTCAAGATGCTTTTATAGGATCCTCGAAATTAATTCAAAATTCTAGCTTCGCTTTTGTAGGTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTGGTACTCTTCATCCCCTCCACCCCTCTTTGTTTAATCTTCCATTTTATGACGTTTGGACATGAATCGTTTGATATTTGAAAAGAATGTAGTATGAAGCTAAGTTGAAAAAGGGCATTTGAGGTTGTATTAGAAGAACACAATCGACGTTTCATAAGTGAAAACTTGAAGAACTCCTAAAAACTATTTTTCAACTTTGATTTCCATATTTCATGTTTGAAGTTGAAATAATGAACAAATTTGATAAACGCTAAATTGAAATAATCGCCAAATAAAGGAGGTGTAGTTGCATCCTTGCTACTCTCTCCGTTTTGGGAAGAGGCTTTGTTGGTGTAGTTACTTGTTTGCTACTCTCTCCGTTCCATTTTGGGCCTTGATTTGGCACAAAGTTTAAGAAAGTGAAGGAGATATTTAAATCTTGTAGTGTTAAACTAAAGACGTGAAAAATATATTAAAATAGCATTTGAATTTATGGTCTTAAGCATGACGTGGGAGATTGAAATTAAAGAGTTACTGCCGATAGAAAGTGGCATACGTTGTGAAACAAACTAAAAAGTAAGAGACATGAATTGAAATAGAGGAATGTTATTTCTTATGAAGCCTTTGGAAGGAGAAGTGTTTGAAGCTTTTCTATCGAGTTATCATGAAGTTCAGCATGTTCAGGGGCTCGAGTAAACGTTAAGACTCATTAAGTTGTTTGTGGTCATCGACAAGTTCAATCACATTACTTGAAAATTCAAGCTTTTCATGATTCTTAGTTCTTCTATTTCCTCCTACTATGCAGTCATTGTTCTATTAGGCTAGATGTATGCAGCTCCTGTTACTGCTTTCACTGAAGTAGACGCTTCCCTTAAAGTAGTCCGTCAACTGAAACTTGTCTTGTTGTGATATTGTTACATTCTTTTCATCCTATCAAGAAGAGACGATAACTGTCCAATTCTTCCCCATCCCCACCAACAAATTAAGGAACGACGAAAGCTGGGGGATAACTTGTTAAATTGCTTGGAATCAAACATTAACTTGCTCCTTTCTTATTGACATACATATTAAAGTAGAACCTCTCTATAATGACGTCATTTGATTGGATACTGTTTGGCTGCTACAGTGAAATGATGTTATAGAGAACACATAACATAACATAAGATGAAAATTTGTTTTAGCACATCAACATAAAAGGTATTATTATATCCCTTAATTTGTTTGTGCAGCGTATGAGTTCGTTAGTCTTCTCTATCTCTGCTTTAGTTGTTCCTAAGTATCAAAAGTGGCTAAAGTTTTGCTGGTGAATTTGCTATAACTTGTAGTTGGAATTTAGCTGAAAAGCTACTGGGGGCCATTGCTCACAGCTACTGTACAAACGATATTCCTTTTTGTTATTCGAAATGATAACATATTTTTGCACATATATATAGACATCAGCCTTGTTACATCAACCTTCTTCTTGTTACGAGAAGTAAGAACACGAGTTAATGAAATGTTTCTTGTATCTTAACTCAATCAGCTCTAGTATTCGTAACCAAATCCCATAAAGTCATAGCTTCATTCAGCTATAAATGAACTAACAGACCAACGGCATGGATTAGTCACTAGGCGTAACCAGACAATAATATTTATCTGCATTTGATGGAACTTCTTATTAAAGGCCAATATGAGTTGAATAAATCTGATCTTTTTACGCTAAACGTAAGATCTAGTCTATGTACATCCTGACATATAAAGCTCAACTAGCTTTCTGAAGTTCTTCGTGTATGTACAGCTACCTAACGTGTTCTGGATAGTTGAGTCCTTTTCGATTGATCTCATTGTTTCTATACTCTTTATAGATAATGCTCGTGTTACAGGATTAACAAGTTTGATGTTGCAGGAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACG</genome_strand>
        <mrna_strand>AGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGACTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCCCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAACCGCGCAATTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214289" ref_strand="+" ref_description="SGN-E214289 [cLEC-77-D22]">
      <seq>taaaaactacacatttttccccttctttgagcctttatcttctccacagagagcaaatttacaaccgccatcgcaaaatttcgaggaaatttcaggtcgagtatgaagaagagtacggtgtcgccgacgtctgtactattcgttgttgccgcaatactaatttcttactactccgatgtctcgtcggcaaaatcagattcagacccaacgccggctccatggcctcatcaattccactcgatactgttcgtcaatttcagcggatctctaagcctaatcgatctctggtacgattggaccaatggccgcaatttcaacatcatacaagaccagctaggtgagcttctctatgatctcgaatggaacaatggcactgtgttccgctacactctagacgatggtaagaagaaatgcagttcagcgctggttgatgttggtattcttcgaccaaattggcttgacggagctacttatcttggtcaacagttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactggaaggtctattcacgtaatgactttcgaagtgggagcagttctcgaggacataaaatggcaagcccctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="58692" stop="54359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58392" g_stop="58056" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56841" g_stop="56590" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="589" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54728" g_stop="54659" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="659" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E214289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58392" e_stop="58056"/>
          <exon e_start="56841" e_stop="56590"/>
          <exon e_start="54728" e_stop="54659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAGGTAAGTCGGGGCGGAGACGGATTTAGAATTTTAAGTTTTATCGGTACAATTTTTTAGGGCTTGTTTGGGTTGAAGAAAAGTTAGGTTGGTATTTTTATCATTTTATCTCGGAATAATTAATCTCGATATTACTATTCATCTTTTTTGTATTCTCCGTCCGATATTATTTGTCATATTTCTATTTTTAGAGTCAAATTATAAAATCTTTGACTAACATTTTAAGATGTATTTTTCTGCAAAAAAAATTGCAATTTATAGTATTTTTCATATAGTTTTAGAATATATAATTTTTTTGTTTAAAATATCGAATTAATGAGATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAAAAATTTCGGACGAAGGAAATATTAATTACTAATATTTTTATAACTTATCTCGTAATTAATCATTAAGAAAAAGGATAAGACATTATTACATTTTTTGTTTCGTGACTATTTATGCTTGTTCATCATACCAAACGAGCCTAAGTATTTAAATTTATGTGATATAATTTGATTTAGATATAAAATTTAAGGAAAAAAACATATTTTGGAAAATTTGTAGTCTAAAATATTTTTTGATAATTTATGTGATTGTAAATTATTTTATTAAAATTGTTAGAAAAAATTAATTATTTTATTAAGAGTAAAAGTAATTTTGAAGTTAAATTGTTTTCACTTATAGAAATTTGACATTTTTCAAGGGACGGACTAAAAAAAGAATTTGTGTCACATAAATTGATATAGACAGAGTAGTATTGAACGTGTTACATCTTTATATTTATTATCATATAAAATATATTTATTATTATAGTGGAATTTAATGTATGTATTTATATGTTTGCACCAATAGTACTGGGTTTAGATGAATCTGATATGAAAGACTACGTCTCATTTGTCTATGGATTTGACATAATTCAATAGCTTAAAGTTAAATTTTATGTCTATGTCTCTCTCCATCTCGTTACTTTTTGCTTATCGAGAGTCAATATTGTACCTTCGAAGATCATTATGATATCTTAATTAAAATCTGGATATTCAGTAGCTACATAGAAAGTATTATAAGTTGTAATATTTCTATATATCACATATATTGGTACAAAGAGAGTATTATGTATGGATAATTTGTCAAGATGCTTTTATAGGATCCTCGAAATTAATTCAAAATTCTAGCTTCGCTTTTGTAGGTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTGGTACTCTTCATCCCCTCCACCCCTCTTTGTTTAATCTTCCATTTTATGACGTTTGGACATGAATCGTTTGATATTTGAAAAGAATGTAGTATGAAGCTAAGTTGAAAAAGGGCATTTGAGGTTGTATTAGAAGAACACAATCGACGTTTCATAAGTGAAAACTTGAAGAACTCCTAAAAACTATTTTTCAACTTTGATTTCCATATTTCATGTTTGAAGTTGAAATAATGAACAAATTTGATAAACGCTAAATTGAAATAATCGCCAAATAAAGGAGGTGTAGTTGCATCCTTGCTACTCTCTCCGTTTTGGGAAGAGGCTTTGTTGGTGTAGTTACTTGTTTGCTACTCTCTCCGTTCCATTTTGGGCCTTGATTTGGCACAAAGTTTAAGAAAGTGAAGGAGATATTTAAATCTTGTAGTGTTAAACTAAAGACGTGAAAAATATATTAAAATAGCATTTGAATTTATGGTCTTAAGCATGACGTGGGAGATTGAAATTAAAGAGTTACTGCCGATAGAAAGTGGCATACGTTGTGAAACAAACTAAAAAGTAAGAGACATGAATTGAAATAGAGGAATGTTATTTCTTATGAAGCCTTTGGAAGGAGAAGTGTTTGAAGCTTTTCTATCGAGTTATCATGAAGTTCAGCATGTTCAGGGGCTCGAGTAAACGTTAAGACTCATTAAGTTGTTTGTGGTCATCGACAAGTTCAATCACATTACTTGAAAATTCAAGCTTTTCATGATTCTTAGTTCTTCTATTTCCTCCTACTATGCAGTCATTGTTCTATTAGGCTAGATGTATGCAGCTCCTGTTACTGCTTTCACTGAAGTAGACGCTTCCCTTAAAGTAGTCCGTCAACTGAAACTTGTCTTGTTGTGATATTGTTACATTCTTTTCATCCTATCAAGAAGAGACGATAACTGTCCAATTCTTCCCCATCCCCACCAACAAATTAAGGAACGACGAAAGCTGGGGGATAACTTGTTAAATTGCTTGGAATCAAACATTAACTTGCTCCTTTCTTATTGACATACATATTAAAGTAGAACCTCTCTATAATGACGTCATTTGATTGGATACTGTTTGGCTGCTACAGTGAAATGATGTTATAGAGAACACATAACATAACATAAGATGAAAATTTGTTTTAGCACATCAACATAAAAGGTATTATTATATCCCTTAATTTGTTTGTGCAGCGTATGAGTTCGTTAGTCTTCTCTATCTCTGCTTTAGTTGTTCCTAAGTATCAAAAGTGGCTAAAGTTTTGCTGGTGAATTTGCTATAACTTGTAGTTGGAATTTAGCTGAAAAGCTACTGGGGGCCATTGCTCACAGCTACTGTACAAACGATATTCCTTTTTGTTATTCGAAATGATAACATATTTTTGCACATATATATAGACATCAGCCTTGTTACATCAACCTTCTTCTTGTTACGAGAAGTAAGAACACGAGTTAATGAAATGTTTCTTGTATCTTAACTCAATCAGCTCTAGTATTCGTAACCAAATCCCATAAAGTCATAGCTTCATTCAGCTATAAATGAACTAACAGACCAACGGCATGGATTAGTCACTAGGCGTAACCAGACAATAATATTTATCTGCATTTGATGGAACTTCTTATTAAAGGCCAATATGAGTTGAATAAATCTGATCTTTTTACGCTAAACGTAAGATCTAGTCTATGTACATCCTGACATATAAAGCTCAACTAGCTTTCTGAAGTTCTTCGTGTATGTACAGCTACCTAACGTGTTCTGGATAGTTGAGTCCTTTTCGATTGATCTCATTGTTTCTATACTCTTTATAGATAATGCTCGTGTTACAGGATTAACAAGTTTGATGTTGCAGGAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGT</genome_strand>
        <mrna_strand>TAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325849" ref_strand="+" ref_description="SGN-E325849 [cTOC-12-D16]">
      <seq>aaatttcgaggaaatttcaggtcgagtatgaagaagagtacggtgtcgccgacgtctgtactattcgttgttgccgcaatactaatttcttactactccgatgtctcgtcggcaaaatcagattcagacccaacgccggctccatggcctcatcaattccactcgatactgttcgtcaatttcagcggatctctaagcctaatcgatctctggtacgattggaccaatggccgcaatttcaacatcatacaagaccagctaggtgagcttctctatgatctcgaatggaacaatggcactgtgttccgctacactctagacgatggtaagaagaaatgcagttcagcgctggttgatgttggtattcttcgaccaaattggcttgacggagctacttatcttggtcaacagttcatcgatggatttcactgtaatgtatggcagaaggtggatttcatttggtattatgaagacatcgtcacaaagagacccgtccattgggttttctatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="58617" stop="56290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58317" g_stop="58056" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.681" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56841" g_stop="56590" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="514" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E325849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58317" e_stop="58056"/>
          <exon e_start="56841" e_stop="56590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAGGTAAGTCGGGGCGGAGACGGATTTAGAATTTTAAGTTTTATCGGTACAATTTTTTAGGGCTTGTTTGGGTTGAAGAAAAGTTAGGTTGGTATTTTTATCATTTTATCTCGGAATAATTAATCTCGATATTACTATTCATCTTTTTTGTATTCTCCGTCCGATATTATTTGTCATATTTCTATTTTTAGAGTCAAATTATAAAATCTTTGACTAACATTTTAAGATGTATTTTTCTGCAAAAAAAATTGCAATTTATAGTATTTTTCATATAGTTTTAGAATATATAATTTTTTTGTTTAAAATATCGAATTAATGAGATCTAATTTAACTTTAAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAAAAATTTCGGACGAAGGAAATATTAATTACTAATATTTTTATAACTTATCTCGTAATTAATCATTAAGAAAAAGGATAAGACATTATTACATTTTTTGTTTCGTGACTATTTATGCTTGTTCATCATACCAAACGAGCCTAAGTATTTAAATTTATGTGATATAATTTGATTTAGATATAAAATTTAAGGAAAAAAACATATTTTGGAAAATTTGTAGTCTAAAATATTTTTTGATAATTTATGTGATTGTAAATTATTTTATTAAAATTGTTAGAAAAAATTAATTATTTTATTAAGAGTAAAAGTAATTTTGAAGTTAAATTGTTTTCACTTATAGAAATTTGACATTTTTCAAGGGACGGACTAAAAAAAGAATTTGTGTCACATAAATTGATATAGACAGAGTAGTATTGAACGTGTTACATCTTTATATTTATTATCATATAAAATATATTTATTATTATAGTGGAATTTAATGTATGTATTTATATGTTTGCACCAATAGTACTGGGTTTAGATGAATCTGATATGAAAGACTACGTCTCATTTGTCTATGGATTTGACATAATTCAATAGCTTAAAGTTAAATTTTATGTCTATGTCTCTCTCCATCTCGTTACTTTTTGCTTATCGAGAGTCAATATTGTACCTTCGAAGATCATTATGATATCTTAATTAAAATCTGGATATTCAGTAGCTACATAGAAAGTATTATAAGTTGTAATATTTCTATATATCACATATATTGGTACAAAGAGAGTATTATGTATGGATAATTTGTCAAGATGCTTTTATAGGATCCTCGAAATTAATTCAAAATTCTAGCTTCGCTTTTGTAGGTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG</genome_strand>
        <mrna_strand>AAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719456" ref_strand="+" ref_description="SGN-E719456 [FC07DG02]">
      <seq>gaccgcttccagcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61074" stop="63788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61373" g_stop="61461" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="191" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="220" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63488" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="522" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E719456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61373" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTT</genome_strand>
        <mrna_strand>GACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219902" ref_strand="+" ref_description="SGN-E219902 [cLEL-24-K22](-)">
      <seq>ggcacgaggcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61081" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61376" g_stop="61461" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="188" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="217" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63452" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="483" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="499"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E219902" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61376" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>GGCACGAGGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689501" ref_strand="+" ref_description="SGN-E689501 [LH_Ea01B03]">
      <seq>catttcggcttcatctcagctgcctccgacgcgcttcctccctcgctgccggccggaatttcctgttaacctcgcgaagatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtgtgcggtaactgccagaccgtcttgtgccagccaactggtggacgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaaatgacatgttatgttatgtttttcaattaaattgggtttcaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61085" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61380" g_stop="61461" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="184" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="213" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63452" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="480" r_length="267" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E689501" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61380" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC-AATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>CATTTCGGCTTCATCTCAGCTGCCTCCGACGCGCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTGTGCGGTAACTGCCAGACCGTCTTGTGCCAGCCAACTGGTGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAAATGACATGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690577" ref_strand="+" ref_description="SGN-E690577 [LH_Ea03N23]">
      <seq>catgtgtcttcatctcagctgcctccgacgcgcttcctccctcgctgccggccggaatttcctgttaacctcgcgaagatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtgtgcggtaactgccagaccgtcttgtgccagccaactggtggacgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaaatgacatgttatgttatgtttttcaattaaattgggtttcaattccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61082" stop="105121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61381" g_stop="61461" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="183" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="212" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63451" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="478" r_length="266" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63452" i_stop="65225" i_length="1774">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65226" g_stop="65269" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="522" r_length="44" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E690577" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61381" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63451"/>
          <exon e_start="65226" e_stop="65269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC-AATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTGTTTGTTATTTACTTGTTAGGAAATACGTCATTTCAAGTCGGAGATATTATGTTTTATGAGTGAGGAATGCTTATCATTCGAGCAATGAGCATTAATTTCACCATTTATTTTTATAAACGAGATATATACATTGAATTTCTAAAAAAAAAATTCATTTTAGAAAATGTATTTTATTACAAGTGCTCTTTGGAGAATATCATTGTGTTTAAATAATTCAATTGTCAACAATAGAGCAATAATTAGTGCTTTTTTCAAAATTCCCAAAGTGCTCCAATTTAGTTTCTTTTACAAAATTCATGTCACTTGGTATTTTGTTTAAAATAAGCATTTGCTTCTTGAAAAAAAATATTTTTTCGAATTTGTTTTTATTGAGTTAGTTTTTTTTATTTTTGGTTAAATGGTTAAAATGATAATTCAATAAGTTCAAATTTAAATTAGTATTCTTTGTATGATTACGTAATTATAGTGATTTTATTATTTTATGAATCATATGTTTTAAGTTTTAGTATTACTTTCGGTAATATGTAATTCAAATTAGACTTGTTATTTTTTCTTTTTTTTTTGGGTGAAAAAAGAGCAAAGCTTTTATTTATTTATAGCAAGACTTTGCAAAGTTTTATTGTTTGCTAATTTTGTGAACGTTATGTAATATAATTGTATGAGCATTTTTTATCTGTTAAATTAAAATTGATAAATCAAAAATTAATTATAACTATCTTATTGATTTGATTATAATATTAGCATGCTCATAGATTAAAAGTTGATGATACATACAACTGAATTTAATTGATGAACAATGAGTATTATTTTGCGACGTGTTGTATTGTTTTGATGAATACTTCTTTCTCTCAGTTTATATTTCACAAATTTCCTTCTAATGAGTTAGGAAATGATGCATTTTTATTTGAAGTAAATATTTAATAAGACTATAATTAGCGTTAAGGCTGTGTATCGGGTGATTTTGGTTCGATTTTGAAGTTAATCGATTTGACTTTTCGGTTATTGATTTGTAGACATACTAAACTTTTATAGAACTATTAAGGTATTGACTTATCGATTATTGGATTATCAGTTATTAATCGTTATCGGCTTAATTGATAAGATTTGATACAATTTTTTATTTATTGAAAATCACTTATAAATCAGGTGAACCAAATAAACCATGCACATGAGTTGACAGATTGCGTCTTGCTTAAAAGCAACACACTTGCATCATATAATAATCGGAAATTTGGGACAGTAAAAAATAAAAGTATGAAACTTAATTCTAAGTCAAGAATTTTATACACTAGATGATATAATTTAATTCACTATCGGATTATCGATTAACCTATTAAGAAAAAACTTCATCAGCTATAAAAAATCAAAATCGTTTATCAAAATGACTAAACTAATAACCCACTGTCGATAAATCAACAACTTCTTACCAATTTGCATTATCAATTTCAATTCAATTATGAACCACCCTAATTAGCATGGTTCGAAAGGAATTAGTAGAGGATAGAAGTATAAAATTTGGAAACGTTGGATAGAAAACAAACAGAAATCTCTCATCAAGTTTCATTATTCTTATCGATAATAGTAATTGAGTTAATGCTATCATATGATATTTTTTTATAAGAGAAGTCAGATTATCGAAACTTTTTTAAGTAAACTTGTCATTCTTTCATTTTTCGTGTTTAATTTAAATTTCTAATAAAATTTAAGAATTATACACCAAAAAAGGAAAAAAATTA</genome_strand>
        <mrna_strand>CATGTGTCTTCATCTCAGCTGCCTCCGACGCGCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTGTGCGGTAACTGCCAGACCGTCTTGTGCCAGCCAACTGGTGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAAATGACATGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733185" ref_strand="+" ref_description="SGN-E733185 [LB04AG10]">
      <seq>cgctcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61085" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61381" g_stop="61461" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="183" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="212" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63500" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="526" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="537"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E733185" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61381" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</genome_strand>
        <mrna_strand>CGCTCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734180" ref_strand="+" ref_description="SGN-E734180 [LB12AA03]">
      <seq>agcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61083" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61383" g_stop="61461" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="181" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="210" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63500" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="524" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="538"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E734180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61383" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</genome_strand>
        <mrna_strand>AGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734809" ref_strand="+" ref_description="SGN-E734809 [LB13CF02]">
      <seq>agcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61083" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61383" g_stop="61461" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="181" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="210" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63500" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="524" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="538"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E734809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61383" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</genome_strand>
        <mrna_strand>AGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690963" ref_strand="+" ref_description="SGN-E690963 [LH_Ea04O01]">
      <seq>cccgtatggatctcagctgcctccgacgcgcttcctccctccctgccggccggaatttcctgttaacctcgcgaagatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtgtgcggtaactgccagaccgtcttgtgccagccaactggtggacgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaaatgacatgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61085" stop="63770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61383" g_stop="61461" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="181" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="210" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63469" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="494" r_length="284" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="505"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E690963" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61383" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC-AATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTT</genome_strand>
        <mrna_strand>CCCGTATGGATCTCAGCTGCCTCCGACGCGCTTCCTCCCTCCCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTGTGCGGTAACTGCCAGACCGTCTTGTGCCAGCCAACTGGTGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAAATGACATGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200499" ref_strand="+" ref_description="SGN-E200499 [cLEB-8-L14]">
      <seq>gcacgagcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattaaatctttgttgtgcctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61091" stop="105117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61384" g_stop="61461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="180" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="209" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63502" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="525" r_length="316" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63503" i_stop="64679" i_length="1177">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64680" g_stop="64694" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="540" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E200499" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61384" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63502"/>
          <exon e_start="64680" e_stop="64694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTGTTTGTTATTTACTTGTTAGGAAATACGTCATTTCAAGTCGGAGATATTATGTTTTATGAGTGAGGAATGCTTATCATTCGAGCAATGAGCATTAATTTCACCATTTATTTTTATAAACGAGATATATACATTGAATTTCTAAAAAAAAAATTCATTTTAGAAAATGTATTTTATTACAAGTGCTCTTTGGAGAATATCATTGTGTTTAAATAATTCAATTGTCAACAATAGAGCAATAATTAGTGCTTTTTTCAAAATTCCCAAAGTGCTCCAATTTAGTTTCTTTTACAAAATTCATGTCACTTGGTATTTTGTTTAAAATAAGCATTTGCTTCTTGAAAAAAAATATTTTTTCGAATTTGTTTTTATTGAGTTAGTTTTTTTTATTTTTGGTTAAATGGTTAAAATGATAATTCAATAAGTTCAAATTTAAATTAGTATTCTTTGTATGATTACGTAATTATAGTGATTTTATTATTTTATGAATCATATGTTTTAAGTTTTAGTATTACTTTCGGTAATATGTAATTCAAATTAGACTTGTTATTTTTTCTTTTTTTTTTGGGTGAAAAAAGAGCAAAGCTTTTATTTATTTATAGCAAGACTTTGCAAAGTTTTATTGTTTGCTAATTTTGTGAACGTTATGTAATATAATTGTATGAGCATTTTTTATCTGTTAAATTAAAATTGATAAATCAAAAATTAATTATAACTATCTTATTGATTTGATTATAATATTAGCATGCTCATAGATTAAAAGTTGATGATACATACAACTGAATTTAATTGATGAACAATGAGTATTATTTTGCGACGTGTTGTATTGTTTTGATGAATACTTCTTTCTCTCAGTTTATATTTCACAAATTTCCTTCTAATGAGTTAGGAAATGATGCATTTTTATTTGAAGTAAATATTTAATAAGACTATAATTAGCGTTAAGGCTGTGTATCGGGTGATTTTGGTTCGATTTTGAAGTTAATCGATTTGACTTTTCGGTTATTGATTTGTAGACATACTAAACTTTTATAGAACTATTAAGGTATTGACTTATCGATTATTGGATTATCAGTTATTAATCGTTATCGGCTTAATTGATAAGATTTGATACAATTTTTTATTTATTGAAAATCACTTATAAATCAGGTGAACCAAATAAAC</genome_strand>
        <mrna_strand>GCACGAGCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAAATCTTTGTTGTGCCTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693341" ref_strand="+" ref_description="SGN-E693341 [LH_Ea01B03](-)">
      <seq>gcgtcttcatttcagctgcctccgacgcgcttcctccctcgctgccggccggaatttcctgttaacctcgcgaagatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtgtgcggtaactgccagaccgtcttgtgccagccaactggtggacgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttatggtttagaacaaaggattttggatttacaaatgacatttaatggtatgtttttcaattaaattgggtttcaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61084" stop="98601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61384" g_stop="61461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="180" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="209" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63450" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="474" r_length="265" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63451" i_stop="64679" i_length="1229">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64680" g_stop="64693" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="488" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E693341" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61384" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63450"/>
          <exon e_start="64680" e_stop="64693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC-AATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTGTTTGTTATTTACTTGTTAGGAAATACGTCATTTCAAGTCGGAGATATTATGTTTTATGAGTGAGGAATGCTTATCATTCGAGCAATGAGCATTAATTTCACCATTTATTTTTATAAACGAGATATATACATTGAATTTCTAAAAAAAAAATTCATTTTAGAAAATGTATTTTATTACAAGTGCTCTTTGGAGAATATCATTGTGTTTAAATAATTCAATTGTCAACAATAGAGCAATAATTAGTGCTTTTTTCAAAATTCCCAAAGTGCTCCAATTTAGTTTCTTTTACAAAATTCATGTCACTTGGTATTTTGTTTAAAATAAGCATTTGCTTCTTGAAAAAAAATATTTTTTCGAATTTGTTTTTATTGAGTTAGTTTTTTTTATTTTTGGTTAAATGGTTAAAATGATAATTCAATAAGTTCAAATTTAAATTAGTATTCTTTGTATGATTACGTAATTATAGTGATTTTATTATTTTATGAATCATATGTTTTAAGTTTTAGTATTACTTTCGGTAATATGTAATTCAAATTAGACTTGTTATTTTTTCTTTTTTTTTTGGGTGAAAAAAGAGCAAAGCTTTTATTTATTTATAGCAAGACTTTGCAAAGTTTTATTGTTTGCTAATTTTGTGAACGTTATGTAATATAATTGTATGAGCATTTTTTATCTGTTAAATTAAAATTGATAAATCAAAAATTAATTATAACTATCTTATTGATTTGATTATAATATTAGCATGCTCATAGATTAAAAGTTGATGATACATACAACTGAATTTAATTGATGAACAATGAGTATTATTTTGCGACGTGTTGTATTGTTTTGATGAATACTTCTTTCTCTCAGTTTATATTTCACAAATTTCCTTCTAATGAGTTAGGAAATGATGCATTTTTATTTGAAGTAAATATTTAATAAGACTATAATTAGCGTTAAGGCTGTGTATCGGGTGATTTTGGTTCGATTTTGAAGTTAATCGATTTGACTTTTCGGTTATTGATTTGTAGACATACTAAACTTTTATAGAACTATTAAGGTATTGACTTATCGATTATTGGATTATCAGTTATTAATCGTTATCGGCTTAATTGATAAGATTTGATACAATTTTTTATTTATTGAAAATCACTTATAAATCAGGTGAACCAAATAAA</genome_strand>
        <mrna_strand>GCGTCTTCATTTCAGCTGCCTCCGACGCGCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTGTGCGGTAACTGCCAGACCGTCTTGTGCCAGCCAACTGGTGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTATGGTTTAGAACAAAGGATTTTGGATTTACAAATGACATTTAATGGTATGTTTTTCAATTAAATTGGGTTTCAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337715" ref_strand="+" ref_description="SGN-E337715 [cTOE-17-H6]">
      <seq>gcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61084" stop="105117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61384" g_stop="61461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="180" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="209" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63502" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="525" r_length="316" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63503" i_stop="64679" i_length="1177">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64680" g_stop="64693" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="539" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E337715" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61384" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63502"/>
          <exon e_start="64680" e_stop="64693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTGTTTGTTATTTACTTGTTAGGAAATACGTCATTTCAAGTCGGAGATATTATGTTTTATGAGTGAGGAATGCTTATCATTCGAGCAATGAGCATTAATTTCACCATTTATTTTTATAAACGAGATATATACATTGAATTTCTAAAAAAAAAATTCATTTTAGAAAATGTATTTTATTACAAGTGCTCTTTGGAGAATATCATTGTGTTTAAATAATTCAATTGTCAACAATAGAGCAATAATTAGTGCTTTTTTCAAAATTCCCAAAGTGCTCCAATTTAGTTTCTTTTACAAAATTCATGTCACTTGGTATTTTGTTTAAAATAAGCATTTGCTTCTTGAAAAAAAATATTTTTTCGAATTTGTTTTTATTGAGTTAGTTTTTTTTATTTTTGGTTAAATGGTTAAAATGATAATTCAATAAGTTCAAATTTAAATTAGTATTCTTTGTATGATTACGTAATTATAGTGATTTTATTATTTTATGAATCATATGTTTTAAGTTTTAGTATTACTTTCGGTAATATGTAATTCAAATTAGACTTGTTATTTTTTCTTTTTTTTTTGGGTGAAAAAAGAGCAAAGCTTTTATTTATTTATAGCAAGACTTTGCAAAGTTTTATTGTTTGCTAATTTTGTGAACGTTATGTAATATAATTGTATGAGCATTTTTTATCTGTTAAATTAAAATTGATAAATCAAAAATTAATTATAACTATCTTATTGATTTGATTATAATATTAGCATGCTCATAGATTAAAAGTTGATGATACATACAACTGAATTTAATTGATGAACAATGAGTATTATTTTGCGACGTGTTGTATTGTTTTGATGAATACTTCTTTCTCTCAGTTTATATTTCACAAATTTCCTTCTAATGAGTTAGGAAATGATGCATTTTTATTTGAAGTAAATATTTAATAAGACTATAATTAGCGTTAAGGCTGTGTATCGGGTGATTTTGGTTCGATTTTGAAGTTAATCGATTTGACTTTTCGGTTATTGATTTGTAGACATACTAAACTTTTATAGAACTATTAAGGTATTGACTTATCGATTATTGGATTATCAGTTATTAATCGTTATCGGCTTAATTGATAAGATTTGATACAATTTTTTATTTATTGAAAATCACTTATAAATCAGGTGAACCAAATAAA</genome_strand>
        <mrna_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343455" ref_strand="+" ref_description="SGN-E343455 [cTOF-19-P1]">
      <seq>gcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattcgagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtactcctgtgtttggtttagaacaaaggattttggatctacaatgacttgttatgctatgtccctcacttaaattgggtttcaattggctctggattgggaatgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61084" stop="63773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61384" g_stop="61461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="180" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="209" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63473" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="496" r_length="287" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E343455" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61384" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGC</genome_strand>
        <mrna_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTCGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTACTCCTGTGTTTGGTTTAGAACAAAGGATTTTGGATCTACAATGACTTGTTATGCTATGTCCCTCACTTAAATTGGGTTTCAATTGGCTCTGGATTGGGAATGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712153" ref_strand="+" ref_description="SGN-E712153 [FB04AC02]">
      <seq>gcgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcaagaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61084" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61384" g_stop="61461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="180" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="209" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63452" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="475" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E712153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61384" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354315" ref_strand="+" ref_description="SGN-E354315 [cTOS-16-L20]">
      <seq>cgtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61085" stop="63745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61385" g_stop="61461" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="179" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="208" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63445" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="467" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E354315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61385" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTT</genome_strand>
        <mrna_strand>CGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279455" ref_strand="+" ref_description="SGN-E279455 [cLER-11-L14]">
      <seq>gtcttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgccaaaaaaaaggcatttggagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61086" stop="63797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61386" g_stop="61461" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="178" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="207" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63494" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="515" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E279455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61386" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGT</genome_strand>
        <mrna_strand>GTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694804" ref_strand="+" ref_description="SGN-E694804 [LH_Ea04O02](-)">
      <seq>cttcatctcagctgcctccgacgcggttcctccctcgctgccggccggaatttcctgttaacctcgcgaagatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcagactgttgtggtgtgcggtatctgccagaccgtcttgtgccagccaactggtggacgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaacggatttaggatttacaaatgccatgttatgttatgtttgtcctttaaagggggtttcaattcactctggatttgaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61088" stop="98601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61388" g_stop="61461" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="176" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="205" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63483" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="503" r_length="298" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E694804" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61388" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAA-GGATTTTGGATTTAC-AATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAG</genome_strand>
        <mrna_strand>CTTCATCTCAGCTGCCTCCGACGCGGTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTGTGCGGTATCTGCCAGACCGTCTTGTGCCAGCCAACTGGTGGACGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAACGGATTTAGGATTTACAAATGCCATGTTATGTTATGTTTGTCCTTTAAAGGGGGTTTCAATTCACTCTGGA-TTTGAATTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694803" ref_strand="+" ref_description="SGN-E694803 [LH_Ea04O01](-)">
      <seq>cttcatctcagctgcctccgacgcggttcctccctcgctgccggccggaatttcctgttaacctcgcgaagatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccacttgcagactgttgtggtgtgcggtaactgccagaccgtcttgtgccagccaactggtggacgtgatagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaacggatttaggatttacaaatgacnatgttatgttaagtttttcacttaaaaggggtttcaattcactctggatttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61088" stop="63767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61388" g_stop="61461" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="176" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="205" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63467" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="488" r_length="283" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E694803" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61388" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAA-GGATTTTGGATTTAC-AATGACT-TGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAAT</genome_strand>
        <mrna_strand>CTTCATCTCAGCTGCCTCCGACGCGGTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTTGCAGACTGTTGTGGTGTGCGGTAACTGCCAGACCGTCTTGTGCCAGCCAACTGGTGGACGTGATAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAACGGATTTAGGATTTACAAATGACNATGTTATGTTAAGTTTTTCACTTAAAAGGGGTTTCAATTCACTCTGGA-TTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356356" ref_strand="+" ref_description="SGN-E356356 [cTOS-20-B5]">
      <seq>cttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61088" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61388" g_stop="61461" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="176" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="205" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63452" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="471" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="488"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E356356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61388" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>CTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327625" ref_strand="+" ref_description="SGN-E327625 [cTOC-20-L19]">
      <seq>ttcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacatgtaagtttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggagaagtaaagtcgatgaatttagtgatatttggaacgttgtagcgtttgagattgaagaatgatatttgaaaattgaagttgatcaacttggtaatattttcaaacttagaaaaagtagtatagttgaagttaagatatggttaatggaaagtaaagttgatcaatttagtgatattttagaatttagaaaaaagaagtatatttgaagttgaaatatagtatttggtgattaaagcttggaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61089" stop="62918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61389" g_stop="61461" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62618" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="710" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E327625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61389" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGT</genome_strand>
        <mrna_strand>TTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287873" ref_strand="+" ref_description="SGN-E287873 [cLES-19-O19]">
      <seq>tcatctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccacccaactggagggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaataacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgttattcaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61090" stop="63737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61390" g_stop="61461" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="174" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="203" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63436" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="453" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E287873" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61390" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAA</genome_strand>
        <mrna_strand>TCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCACCCAACTGGAGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAATAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTATTCAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294779" ref_strand="+" ref_description="SGN-E294779 [cLET-17-F21]">
      <seq>tcttatctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagctttggtgtaatcctgtttttgttttagaacaaaggatttttggattacaatgacttgttatgttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61093" stop="63728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61393" g_stop="61461" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63428" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="442" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E294779" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61393" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTT</genome_strand>
        <mrna_strand>TCTTATCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGCTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTTGGATTACAATGACTTGTTATGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734882" ref_strand="+" ref_description="SGN-E734882 [LB13DD06]">
      <seq>ctcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61094" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61394" g_stop="61461" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="170" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="199" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63500" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="513" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="527"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E734882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61394" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</genome_strand>
        <mrna_strand>CTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345286" ref_strand="+" ref_description="SGN-E345286 [cTOF-13-B6]">
      <seq>tcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61095" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61395" g_stop="61461" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63460" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="472" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E345286" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61395" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGAT</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237841" ref_strand="+" ref_description="SGN-E237841 [cLED-18-J15]">
      <seq>tcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcanaaaaaaaaaaaaaaaaaaaaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61095" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61395" g_stop="61461" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63452" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="464" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E237841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61395" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285723" ref_strand="+" ref_description="SGN-E285723 [cLES-5-A23]">
      <seq>tcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctcgttttgctttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61095" stop="63748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61395" g_stop="61461" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63447" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="459" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="469"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E285723" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61395" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTCGTTTTGCTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239844" ref_strand="+" ref_description="SGN-E239844 [cLED-29-N11]">
      <seq>tcagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61095" stop="63536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61395" g_stop="61461" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63236" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="248" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E239844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61395" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCC</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284665" ref_strand="+" ref_description="SGN-E284665 [cLES-3-M19]">
      <seq>cagctgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61096" stop="63705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61396" g_stop="61461" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="168" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="197" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63405" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="416" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E284665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61396" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC</genome_strand>
        <mrna_strand>CAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372496" ref_strand="+" ref_description="SGN-E372496 [TUS-32-I6](-)">
      <seq>tgcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61100" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61400" g_stop="61461" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="164" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="193" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63508" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="515" r_length="322" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E372496" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61400" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTT</genome_strand>
        <mrna_strand>TGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289970" ref_strand="+" ref_description="SGN-E289970 [cLET-9-D18]">
      <seq>gcctccgacgctctttctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61101" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61401" g_stop="61461" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="163" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="192" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63500" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="506" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E289970" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61401" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</genome_strand>
        <mrna_strand>GCCTCCGACGCTCTTTCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372497" ref_strand="+" ref_description="SGN-E372497 [TUS-32-I6]">
      <seq>gcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61101" stop="63800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61401" g_stop="61461" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="163" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="192" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63500" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="506" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E372497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61401" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</genome_strand>
        <mrna_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292951" ref_strand="+" ref_description="SGN-E292951 [cLET-11-N24]">
      <seq>gcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcaaactgttgtggtttgcggtaactgccaaacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaagattttggatttacaatgactctgtatgttatgtttttcaattaaattgggtttcaattcactctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61101" stop="63758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61401" g_stop="61461" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="163" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="192" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63458" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="464" r_length="272" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E292951" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61401" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGG</genome_strand>
        <mrna_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTTGTGGTTTGCGGTAACTGCCAAACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAAGATTTTGGATTTACAATGACTCTGTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291391" ref_strand="+" ref_description="SGN-E291391 [cLET-2-F6]">
      <seq>gcctccgacgctcttcctccctcgctgccggccggaatttcctgttaacctcgcgaaaatggttcttccaaatgatgttgacttgttgaacccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61101" stop="63661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61401" g_stop="61461" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="163" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="192" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63187" g_stop="63361" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="367" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E291391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61401" e_stop="61461"/>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATGGTGAGTTTTTAGCTATGGCGATTCGAATTCCGTTCAAATGTTTTTTTTTTTTTGGTATTAATTTAGTAACTGTTAAAAATTGGCGAAAAAATGGCGAGTTTTTAGTTATGGCGATTCGAGTTTTGTTCTTATTCTATTAACGCAATCTGTTAAAAGTTGGAGCAAAATCAGTGAGCTTTTAGCTATGGCGATTTGGAACTTGTTCTTATGTTCTGTATTAATGTAATCTGTTAAAGTTCGAGCTGAAATAGTGGATTTTTTAGCTGTAGAGATTTGGATTTTGTTCTAATGTGTTTTGTTATAACGTTATATGTGAAAAACTGGAGATTTTTTAGCTATGGAGATTTGAATTTTGTTTAATGTTATATGTATTAATGTGTTTAAAAATTGGATTTTGTAAGGTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTG</genome_strand>
        <mrna_strand>GCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219854" ref_strand="+" ref_description="SGN-E219854 [cLEL-24-K22](-)">
      <seq>gaaaatggttcttccaaatgatgttgacttgttgaaccccaccagctgagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61560" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="110" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="139" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63187" g_stop="63452" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="405" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="421"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E219854" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCCAAATGATGTTGACTTGTTGAA-CCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>GTTCTTCCAAATGATGTTGACTTGTTGAACCCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216417" ref_strand="+" ref_description="SGN-E216417 [cLEL-1-A24](-)">
      <seq>aaatggttcttccaaatgatgttgacttgttgaacccacagctgaagcatgagaagagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagaaaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaatacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61560" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61863" g_stop="61964" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="107" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="136" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63187" g_stop="63447" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="397" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="419"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E216417" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61863" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTG-AGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</genome_strand>
        <mrna_strand>GTTCTTCCAAATGATGTTGACTTGTTGAACCCAC-AGCTGAAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAAAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223844" ref_strand="+" ref_description="SGN-E223844 [cLEL-19-O18](-)">
      <seq>agagaaagcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtaaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttgaatttacaaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61612" stop="105117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61912" g_stop="61964" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="82" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63187" g_stop="63502" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="399" r_length="317" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63503" i_stop="64679" i_length="1177">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64680" g_stop="64694" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="414" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E223844" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61912" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63502"/>
          <exon e_start="64680" e_stop="64694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTAC-AATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTGTTTGTTATTTACTTGTTAGGAAATACGTCATTTCAAGTCGGAGATATTATGTTTTATGAGTGAGGAATGCTTATCATTCGAGCAATGAGCATTAATTTCACCATTTATTTTTATAAACGAGATATATACATTGAATTTCTAAAAAAAAAATTCATTTTAGAAAATGTATTTTATTACAAGTGCTCTTTGGAGAATATCATTGTGTTTAAATAATTCAATTGTCAACAATAGAGCAATAATTAGTGCTTTTTTCAAAATTCCCAAAGTGCTCCAATTTAGTTTCTTTTACAAAATTCATGTCACTTGGTATTTTGTTTAAAATAAGCATTTGCTTCTTGAAAAAAAATATTTTTTCGAATTTGTTTTTATTGAGTTAGTTTTTTTTATTTTTGGTTAAATGGTTAAAATGATAATTCAATAAGTTCAAATTTAAATTAGTATTCTTTGTATGATTACGTAATTATAGTGATTTTATTATTTTATGAATCATATGTTTTAAGTTTTAGTATTACTTTCGGTAATATGTAATTCAAATTAGACTTGTTATTTTTTCTTTTTTTTTTGGGTGAAAAAAGAGCAAAGCTTTTATTTATTTATAGCAAGACTTTGCAAAGTTTTATTGTTTGCTAATTTTGTGAACGTTATGTAATATAATTGTATGAGCATTTTTTATCTGTTAAATTAAAATTGATAAATCAAAAATTAATTATAACTATCTTATTGATTTGATTATAATATTAGCATGCTCATAGATTAAAAGTTGATGATACATACAACTGAATTTAATTGATGAACAATGAGTATTATTTTGCGACGTGTTGTATTGTTTTGATGAATACTTCTTTCTCTCAGTTTATATTTCACAAATTTCCTTCTAATGAGTTAGGAAATGATGCATTTTTATTTGAAGTAAATATTTAATAAGACTATAATTAGCGTTAAGGCTGTGTATCGGGTGATTTTGGTTCGATTTTGAAGTTAATCGATTTGACTTTTCGGTTATTGATTTGTAGACATACTAAACTTTTATAGAACTATTAAGGTATTGACTTATCGATTATTGGATTATCAGTTATTAATCGTTATCGGCTTAATTGATAAGATTTGATACAATTTTTTATTTATTGAAAATCACTTATAAATCAGGTGAACCAAATAAAC</genome_strand>
        <mrna_strand>AGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTAAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGAATTTACAAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353815" ref_strand="+" ref_description="SGN-E353815 [cTOS-10-K4]">
      <seq>gcacaagctcaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcactgtattttccccatcaattttccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61619" stop="63826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61919" g_stop="61964" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="75" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63187" g_stop="63533" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="422" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E353815" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61919" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTG</genome_strand>
        <mrna_strand>GCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.......................................................................................................................GATGTGAAGTGCCAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224339" ref_strand="+" ref_description="SGN-E224339 [cLEL-19-M14](-)">
      <seq>agctcaagcgtttggttcaatctcctaactcattcttcatggatgtgaagtgccaagggttgcttcaacataacaacggtgttcagccactcgcagactgttgtggtttacggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaccagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61624" stop="105117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61924" g_stop="61964" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62084" g_stop="62112" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="71" r_length="30" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63187" g_stop="63502" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="387" r_length="316" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63503" i_stop="64679" i_length="1177">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64680" g_stop="64694" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="402" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E224339" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61924" e_stop="61964"/>
          <exon e_start="62084" e_stop="62112"/>
          <exon e_start="63187" e_stop="63502"/>
          <exon e_start="64680" e_stop="64694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAAAAGTTTGTCAGTGTATTTGTATATTCTTTTGAATTCATGTATTTGTGGTTTAAATTTATGTATATAGTTTTTGAAACTAATCTGTGATTTGTTTTGCTGTGTTGTTTAGGATGTGAAGTGCC-AGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTGTTTGTTATTTACTTGTTAGGAAATACGTCATTTCAAGTCGGAGATATTATGTTTTATGAGTGAGGAATGCTTATCATTCGAGCAATGAGCATTAATTTCACCATTTATTTTTATAAACGAGATATATACATTGAATTTCTAAAAAAAAAATTCATTTTAGAAAATGTATTTTATTACAAGTGCTCTTTGGAGAATATCATTGTGTTTAAATAATTCAATTGTCAACAATAGAGCAATAATTAGTGCTTTTTTCAAAATTCCCAAAGTGCTCCAATTTAGTTTCTTTTACAAAATTCATGTCACTTGGTATTTTGTTTAAAATAAGCATTTGCTTCTTGAAAAAAAATATTTTTTCGAATTTGTTTTTATTGAGTTAGTTTTTTTTATTTTTGGTTAAATGGTTAAAATGATAATTCAATAAGTTCAAATTTAAATTAGTATTCTTTGTATGATTACGTAATTATAGTGATTTTATTATTTTATGAATCATATGTTTTAAGTTTTAGTATTACTTTCGGTAATATGTAATTCAAATTAGACTTGTTATTTTTTCTTTTTTTTTTGGGTGAAAAAAGAGCAAAGCTTTTATTTATTTATAGCAAGACTTTGCAAAGTTTTATTGTTTGCTAATTTTGTGAACGTTATGTAATATAATTGTATGAGCATTTTTTATCTGTTAAATTAAAATTGATAAATCAAAAATTAATTATAACTATCTTATTGATTTGATTATAATATTAGCATGCTCATAGATTAAAAGTTGATGATACATACAACTGAATTTAATTGATGAACAATGAGTATTATTTTGCGACGTGTTGTATTGTTTTGATGAATACTTCTTTCTCTCAGTTTATATTTCACAAATTTCCTTCTAATGAGTTAGGAAATGATGCATTTTTATTTGAAGTAAATATTTAATAAGACTATAATTAGCGTTAAGGCTGTGTATCGGGTGATTTTGGTTCGATTTTGAAGTTAATCGATTTGACTTTTCGGTTATTGATTTGTAGACATACTAAACTTTTATAGAACTATTAAGGTATTGACTTATCGATTATTGGATTATCAGTTATTAATCGTTATCGGCTTAATTGATAAGATTTGATACAATTTTTTATTTATTGAAAATCACTTATAAATCAGGTGAACCAAATAAAC</genome_strand>
        <mrna_strand>AGCTCAAGCGTTTGGTTCAATCTCCTAACTCATTCTTCATG.......................................................................................................................GATGTGAAGTGCCAAGGGTTGCTTCAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTACGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGACCAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368690" ref_strand="+" ref_description="SGN-E368690 [TUS-22-N24]">
      <seq>tgctgtgttgtttaggatgtgaagtgccagggttgcttcaacatgtaagtttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggagaagtaaagtcgatgaatttagtgatatttggaacgttgtagcgtttgagattgaagaatgatatttgaaaattgaagttgatcaacttggtaatattttcaaacttagaaaaagtagtatagttgaagttaagatatggttaatggaaagtaaagttgatcaatttagtgatattttagaattttagaaaaaaagaagtatatttgaagttgaaatatagtatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61769" stop="62897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62069" g_stop="62597" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E368690" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62069" e_stop="62597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAA-TTTAG-AAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGT</genome_strand>
        <mrna_strand>TGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTTAGAAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240899" ref_strand="+" ref_description="SGN-E240899 [cLED-24-G23]">
      <seq>tgctgtgttgtttaggatgtgaagtgccagggttgcttcaacatgtaagtttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61769" stop="62671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62069" g_stop="62371" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E240899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62069" e_stop="62371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAG</genome_strand>
        <mrna_strand>TGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255277" ref_strand="+" ref_description="SGN-E255277 [cLEG-30-A21]">
      <seq>tgtgaagtgccagggttgcttcaacatgtaagtttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggagaagtaaagtcgatgaatttagtgatatttggaacgttgtagcgtttgagattgaagaatgatatttgaaaattgaagttgatcaacttggtaatattttcaaacttagaaaaagtagtatagttgaagttaagatatggttaatggaaagtaaagttgatcaatttagtgatattttagaatttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61786" stop="62863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62086" g_stop="62562" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E255277" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62086" e_stop="62562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAA</genome_strand>
        <mrna_strand>TGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369755" ref_strand="+" ref_description="SGN-E369755 [TUS-25-M13]">
      <seq>tgtgaagtgccagggttgcttcaacatgtaagtttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggagaagtaaagtcgatgaatttagtgatatttggaacgttgtagcgtttgagattgaagaatgatatttgaaaattgaagttgatcaacttggtaatatttttcaaacttagaaaaagtagtatagtttgaagttaagatatggttaatggaaagttaagttgatcaatttagtgatattttataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61786" stop="62855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62086" g_stop="62555" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E369755" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62086" e_stop="62555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATA-TTTTCAAACTTAGAAAAAGTAGTATAG-TTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTT</genome_strand>
        <mrna_strand>TGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTTCAAACTTAGAAAAAGTAGTATAGTTTGAAGTTAAGATATGGTTAATGGAAAGTTAAGTTGATCAATTTAGTGATATTTTATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345929" ref_strand="+" ref_description="SGN-E345929 [cTOF-24-N1]">
      <seq>tttttctttttgttcatttatcttagtttggtgcttttgacttgaatttagtgatatttagaaccaagtactgatatttgaagttgagatatggttaatggagaagtaaagttgatgaatttagtgatatttggaacgtagtagtatttgagattgaaaaatggtagtatttgaaaattaaagttgatcaacttagtgatattttagaacttagaaaaagtagaatatttgaagttgagatatggttaatggagaagtaaagtcgatgaatttagtgatatttggaacgttgtagcgtttgagattgaagaatgatatttgaaaattgaagttgatcaacttggtaatattttcaaacttagaaaaagtagtatagttgaagttaagatatggttaatggaaagtaaagttgatcaatttagtgatattttagaatttagaaaaaagaagtatatttgaagttgaaatatagtatttggtgattaaagcttggaaaaaagtagagttgaagaatggttgatgataagtaaagttgatgaattcattaatatcccataataagtagtatttgaagctggaaaacaagttaggagaactcatccttgaaatttatccgaaaaatcattctaatttatacaaccaaagaataattaaaatgcttttttgtataaaaggaaacgaacttctcaaacagagttggtagtgcttgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61818" stop="63132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62118" g_stop="62832" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E345929" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62118" e_stop="62832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGC-TTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAAC</genome_strand>
        <mrna_strand>TTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTTGTATAAAAGGAAACGAACTTCT-CAAACAGAGTTGGTAGTGCTTGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369754" ref_strand="+" ref_description="SGN-E369754 [TUS-25-M13](-)">
      <seq>taaaatgctttttgtataaaaggaaacgaacttctccaaacagagttggtagtgcttgatgaaccagttagttgacgtctgtagagagattatataattaaccaagatagttgcttacggaaagtagaaagtatatgaacacgacctgaatctttgaggaaggacctgagttaggtagtgtttgatgaaccagttagttgacgtctgaagaggttatatatgaattcttctgttaagccaagatagtagtcgcctacggaaagtagaaagtatatgaacacgaactgaatctttgaggtaaggacctgagtttggttcagttccgatttgaccctcaataacatctttcatattagtttctgtcgtacaaatataactaggatcgcttctcagtctctttctctctatatgtgtgcagaacaacggtgttcagccactcgcagactgttgtggtttgcggtaactgccagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="62469" stop="63752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62769" g_stop="63452" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="698"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E369754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62769" e_stop="63452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</genome_strand>
        <mrna_strand>TAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687977" ref_strand="+" ref_description="SGN-E687977 [T3_tus_81_O10]">
      <seq>ctggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="62958" stop="63748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63258" g_stop="63447" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E687977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63258" e_stop="63447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</genome_strand>
        <mrna_strand>CTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328575" ref_strand="+" ref_description="SGN-E328575 [cTOC-23-F3]">
      <seq>tggtgggcgtgctagactcaccagttggctgtctttcaagagaaagggagattacagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="62959" stop="63748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63259" g_stop="63447" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="190" polyA_stop="199"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E328575" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63259" e_stop="63447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGCGTGCTAGACTCACC-GAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</genome_strand>
        <mrna_strand>TGGTGGGCGTGCTAGACTCACCAGTTGGCTG-TCTTTCAAGAGAAAGGGAGATTACAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328702" ref_strand="+" ref_description="SGN-E328702 [cTOC-23-E18]">
      <seq>tggtgggcgtgctagactcaccagttggctgtctttcaagagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="62959" stop="63748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63259" g_stop="63447" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="190" polyA_stop="199"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E328702" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63259" e_stop="63447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGCGTGCTAGACTCACC-GAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</genome_strand>
        <mrna_strand>TGGTGGGCGTGCTAGACTCACCAGTTGGCTG-TCTTTCAAGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352094" ref_strand="+" ref_description="SGN-E352094 [cTOS-13-H4]">
      <seq>ttctttcaggagaaagggagattagagaagaacagaagtgataaagttaatatgggtgacaaattaagttttggtgtaatcctgtttttgttttagaacaaaggattttggatttacaatgacttgttatgttatgtttttcaattaaattgggtttcaattcactctggattttgaatttatgctatgtattagatctttgttgtgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="62989" stop="63796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63289" g_stop="63494" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="209" polyA_stop="219"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E352094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63289" e_stop="63494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGT</genome_strand>
        <mrna_strand>TTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722253" ref_strand="+" ref_description="SGN-E722253 [FC16CH02]">
      <seq>ggccaaatcggccgaattcctctgccagcgtcttcatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcaaacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65109" stop="67923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65396" g_stop="65500" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="207" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="236" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67623" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="540" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="595"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E722253" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65396" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAACCCTAGAATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTC</genome_strand>
        <mrna_strand>GGCCAAATCGGCCGAATTCCTCTGCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAAACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718533" ref_strand="+" ref_description="SGN-E718533 [FC04DG10]">
      <seq>aatcggccgaattgctctgccagcgtctccatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65109" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65401" g_stop="65500" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="202" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="231" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="585" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="623"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E718533" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65401" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGAATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCTCTGCCAGCGTCTCCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720301" ref_strand="+" ref_description="SGN-E720301 [FC10BF07]">
      <seq>gggcgattggcggccaatcggccgaattgctctgccagcgtcttcatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtacttgatagatgttaaaaaaaaaaaaaaaaaaaaagtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65109" stop="139404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65410" g_stop="65500" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="115" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="217" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="246" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67714" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="641" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67715" i_stop="68272" i_length="558">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68273" g_stop="68296" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="665" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E720301" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65410" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67714"/>
          <exon e_start="68273" e_stop="68296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTACGTTTGTTTTACCTGTTATGATCTATGAGATGTTTCAGTCTTTAAGTTGTTGATTCCTTTGTTAGTGCCAGTGTGGATAAGTACACTTCAAAGTGGAAACTTAAAAATGAAGTGATTGATGCCAAATCAATGTTATTTGCAAAGTTTTCAGTAACAAATTGTATAAAAAGCATGATATGCAGAATGTGAAGTAAAACGAATATTGAACATGATGATAGATCTTCATTTTTGAGCTCTTTATGATTGATTTTTACCTTTACATATGAGAGAAGGTTTTCTTTTGTTCAAATTGTTGAAGGGTATGTGATATCCTTTTCTTCTTCAAGATAAGCATATATTCTTTTACCTAAAGGAAGGGAAATCAACCCGAGACTCTGTTAGTAGTTAGTAGCGGTGAGTGAGAGCAGATTGGGGTTTGAAAGAAAAACAAACACGAAGCTTCGTTCCTCTCCTTTTAGGTGAGAGCTACTTAGTTCCTCTGCAAAGTGTTCACTTTTCACCCGGCTACTACAGTTGGAACCAATGAAACAAATGATTGACCTATCATATCAATTCTAAGAAACAGAAAATACCAAAAAGTTTA</genome_strand>
        <mrna_strand>AATTGCTCTGCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720210" ref_strand="+" ref_description="SGN-E720210 [FC10AE10]">
      <seq>tcggccgaattgatctctgccagcgtcttcatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65109" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65413" g_stop="65500" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="100" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="202" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="231" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="585" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="632"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E720210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65413" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>ATCTCTGCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722593" ref_strand="+" ref_description="SGN-E722593 [FC17CH12]">
      <seq>gggcgaatggcggccaatcggccgaattgagcgtcttcatttcccctgtaagggacgctcttcctccctcgccgccggccggaattccccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtacttgatagatgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65146" stop="139404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65424" g_stop="65500" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="108" r_length="77" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="210" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="239" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67714" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="634" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67715" i_stop="68039" i_length="325">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.671" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68040" g_stop="68047" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="642" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68048" i_stop="68268" i_length="221">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68269" g_stop="68305" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="679" r_length="37" r_score="0.595"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E722593" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65424" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67714"/>
          <exon e_start="68040" e_stop="68047"/>
          <exon e_start="68269" e_stop="68305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTACGTTTGTTTTACCTGTTATGATCTATGAGATGTTTCAGTCTTTAAGTTGTTGATTCCTTTGTTAGTGCCAGTGTGGATAAGTACACTTCAAAGTGGAAACTTAAAAATGAAGTGATTGATGCCAAATCAATGTTATTTGCAAAGTTTTCAGTAACAAATTGTATAAAAAGCATGATATGCAGAATGTGAAGTAAAACGAATATTGAACATGATGATAGATCTTCATTTTTGAGCTCTTTATGATTGATTTTTACCTTTACATATGAGAGAAGGTTTTCTTTTGTTCAAATTGTTGAAGGGTATGTGATATCCTTTTCTTCTTCAAGATAAGCATATATTCTTTTACCTAAAGGAAGGGAAATCAACCCGAGACTCTGTTAGTAGTTAGTAGCGGTGAGTGAGAGCAGATTGGGGTTTGAAAGAAAAACAAACACGAAGCTTCGTTCCTCTCCTTTTAGGTGAGAGCTACTTAGTTCCTCTGCAAAGTGTTCACTTTTCACCCGGCTACTACAGTTGGAACCAATGAAACAAATGATTGACCTATCATATCAATTCTAAGAAACAGAAAATACCAAAAAGTTTAAATTTTCAA</genome_strand>
        <mrna_strand>CGTCTTCATTTCCCCTGTAAGGGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTCCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTAA.....................................................................................................................................................................................................................................................................................................................................AAAAAAAA.............................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735300" ref_strand="+" ref_description="SGN-E735300 [LB14DH04]">
      <seq>tttatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcnnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65128" stop="67923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65428" g_stop="65500" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="204" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67623" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="508" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="527"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E735300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65428" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTC</genome_strand>
        <mrna_strand>TTTATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335749" ref_strand="+" ref_description="SGN-E335749 [cTOE-8-N9]">
      <seq>ttcatttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagatttggtgtatcctggcttttccttttttgatcttttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65128" stop="67856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65428" g_stop="65500" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="175" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="204" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67556" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="441" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E335749" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65428" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAG</genome_strand>
        <mrna_strand>TTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGATTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714018" ref_strand="+" ref_description="SGN-E714018 [FB10BB10]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67687" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="569" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E714018" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAAT</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTANAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343565" ref_strand="+" ref_description="SGN-E343565 [cTOF-19-P13]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67686" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="568" r_length="367" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E343565" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAA</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346651" ref_strand="+" ref_description="SGN-E346651 [cTOF-28-E23]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67680" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="560" r_length="359" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E346651" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCC</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATC--TTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343533" ref_strand="+" ref_description="SGN-E343533 [cTOF-19-M18]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67680" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="562" r_length="361" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E343533" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCC</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734577" ref_strand="+" ref_description="SGN-E734577 [LB13AB07]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctnnnnnnnnnnnnnnnnanaaaaaaaaaaaaacccccgggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="555" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="583"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E734577" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733829" ref_strand="+" ref_description="SGN-E733829 [LB11AC04]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctannaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="555" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="576"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E733829" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347321" ref_strand="+" ref_description="SGN-E347321 [cTOF-33-O17]">
      <seq>atttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65131" stop="67951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65431" g_stop="65500" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="201" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67646" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="528" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="546"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E347321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65431" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCT</genome_strand>
        <mrna_strand>ATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720804" ref_strand="+" ref_description="SGN-E720804 [FC11DF04]">
      <seq>tttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcaaacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65132" stop="139404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65432" g_stop="65500" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67578" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="459" r_length="259" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67579" i_stop="71408" i_length="3830">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71409" g_stop="71466" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="517" r_length="58" r_score="0.672"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E720804" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65432" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67578"/>
          <exon e_start="71409" e_stop="71466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTACGTTTGTTTTACCTGTTATGATCTATGAGATGTTTCAGTCTTTAAGTTGTTGATTCCTTTGTTAGTGCCAGTGTGGATAAGTACACTTCAAAGTGGAAACTTAAAAATGAAGTGATTGATGCCAAATCAATGTTATTTGCAAAGTTTTCAGTAACAAATTGTATAAAAAGCATGATATGCAGAATGTGAAGTAAAACGAATATTGAACATGATGATAGATCTTCATTTTTGAGCTCTTTATGATTGATTTTTACCTTTACATATGAGAGAAGGTTTTCTTTTGTTCAAATTGTTGAAGGGTATGTGATATCCTTTTCTTCTTCAAGATAAGCATATATTCTTTTACCTAAAGGAAGGGAAATCAACCCGAGACTCTGTTAGTAGTTAGTAGCGGTGAGTGAGAGCAGATTGGGGTTTGAAAGAAAAACAAACACGAAGCTTCGTTCCTCTCCTTTTAGGTGAGAGCTACTTAGTTCCTCTGCAAAGTGTTCACTTTTCACCCGGCTACTACAGTTGGAACCAATGAAACAAATGATTGACCTATCATATCAATTCTAAGAAACAGAAAATACCAAAAAGTTTAAATTTTCAACTAATAACATTGATTCAATTGACATTGACATAATAGAAAATTTCGTCTATTAAGAAGGATTTCCCAAATATCTGAAATTGAGATAATCATAGAAAATGTGAAATATTTTTAAGAAAACAGTAGCTCCAATTTGTACACATTTTAAAACTTGACAATTGACATTACCACTTACCAGTTACAAATAATTGACCTTTTTATACCAAAACATTCAAAAAGTTAGTCACATTATTATACATGAGTACTAAATGTCAATCAAGTATATACAATCATTACAAATTACAGAACCATTCAGTAGGGTTCATATACATATATTTTTTTTAGCATATATCACTGTAAAAGTTTTGGGCCAGTGTTAGAGTACATCCATGATGTTATTGTCTCCACAAGCATATCCAAGTCCTTTGAATTCCCAGAATTAAGAATTATAGAGTCTACATTACCGAGCGTATTGCCGACTTCCTTCGTGACGTTTTCCCATGGCGTTCCTGCTGTCAAGTTCGCCAATAGCTCGCTGCTCCTGTTAACAGCGTCCGTCATTCCTGGAGGAGCATTTGGTAGAGCCTGAAAGTTGAAAGAAAGGTAAGATATGGTGTACATTGTTTCAACCTCTGAAAAATGCATGAATGTGCCAGCAGAGTCCCTCCGTCCCGTCTCGTCCCAATTTATGTAGCTATAAAACTCGTCTCATTAAAGGTAAATGAGAAGTTATATCATTCTTTTTGGGCAAACTAAAAAGGAAAGTACATCACATAAATTATTGAAACTAGATGAGATGGACTTCCATTTCACTGAGTTTCGTAGTTTAGGGTGAACCTGCTGTAGAGGAAGCGCATGGTCTCCAGGAAGAGTGCGGATAGACATATCCAGCATTGAGCTGATGGCGGAACCTGAGCTGAGCACCTGAGCTAGTGTTGAAGTTTCGTCGATTGTATCATCTTTGAACTTAACTAAGAGATTCCTCGAAATCCCGTAGTAGGACCTTATCTGTAGTGTACATATTAGATAAGAAAAGTTACATAATTATGGACAATGAAGATATATATTTTGTGTAAGCTACTCTATAATCCCATTTCCTACGACATAATTGCTACTTTTAAGAACTGGGTTGGGGGCGGGGTGAGTGGGTGTTGGGTAGGGATTTTGTTAAGAAACTGATTTGTGAAACCTGCAACCCGCCCCACCCCATACCTGCCCCCAAAAGGACAAGCCCGCCCCACCCCATTGCATCCCTACATGTATCTGCTCTACATTTGCATAGTAGTCATTGAATTGGTCATACAAATAAACACTACACAAGTTACACCAAAAAGTAGCAATAAAGTGACCTAAAGATGTTCATGATATGTACCTAGTTTAATATGTAGCTATAGTTTATGAGCATTAAGATCTCAAAATTTTCCATACCAGTCTTTGAGTTTCTTCTGGTCTTGGAGTGAAATTTTCTTTTCCATTAATCAAGTCCGTGTATAGAGGAGTCAGTTGCTCAACCAGTGGAAAAACTTGCTTCATGATTGAGGGGCTAAGGTTCTCTATTTGCTTCATAGTCATCTCCGCCTGTAGATATAGAACATGAGTGGAGCAAAAGAAGGTATCTCTTATTCAGTTTCATGTGAAAGTTTATGAAAAAGTGACTAACACAACTACCAGGGTGACCTAGTGTTTGAACTACAGCATCCAACAAAAAAAGTGAAGGTCAACCAAAGGCACAAAAGAATGAACAAAACCTTCAAGTATGTGAAAATGAAGGATGCTCTTCCTCAATTAGCATTTTTTCAAGAGACAGTTGAGTAGACATGGATACAAGTTAGATTAGAAATTCTTATCGTTTGTGTTTGAGCAATTGCACATGACACAATTAAGTAGAGGCAATTTTACTACTCTTGGCATCCATCCATCCGATGACTCAAAAATAGTCTCAATCCAACCCGTTTATCCAGGAAAAAACATCCATAATGTCACATGTGAAAGTCATCTAACAAGAACGTTGAACAGAAGCTGGGTAGTTGGTGAATTAAGCTACTTACCCCAAGACGAATGGTTGGTGATGATGCGATCTGTGATAAAACTGGTCCTAAGTTTTGCATCATTGGAACAAGAACAGATGAGAACAACGGCACTGCAAGGCTGGCATCCTGTGAAAACAAAGTAATAGGAAGCTTGTTAAGAGTTCCAATAATATGCTAAGATGGTGATGGATTACCCACGCTGCGGGGCTTCAGCACACATATATTATTGTGCACATTAAAATGTCCAGAAACTGAAACTCCTGGTGGTCTAACAGGAGACCTAAAACATGTACATGTATTACTGTTTTTTACTTGCATGAACATCTACATGATGAGTATAAAAGCAGTAACTTGAATTCTTTTTATAAGGTGAACAATGTTATTAATGATGGGGAGATCCTCTTATAACAAGCCGTATACCAAAAAACACACAACTTACACCAAAATATGGTTCTCCACAAATGAAACCCAATAAAAGCAAAAGCTTTGATTCAACCAATTTACAATATTCTCATAGCTAGGTCCATCAATGTTTTCTACTTTCCTTTTCCTACAAGTTCTAGAATTTAAATGAGGAACACGCTGACTCAGTGAGGATTCATATAGATGACCCCAACTTATTTGGGACTAAGGCATAGATGTTGTTGTATAAGATTTGGAATATAGAAGTTCAAACTAAGGACAAGTCTCCATCATTCAAACACAAGAGAGTGCAGAATATTTCCCCTTTATATGATAAGCTGCCTAAAAGCAAATTACACATAAACTTCTAACTCTGCTACTCGATGTAACTGAAGCATAACGAACTCTAAAGAAGCCTCATTTTGCTCAGGCCAGATGAAACTAGAATTGTAACAGGGTTGAGGATAAGTCACACAATTTAAGATGCTATACCTAGGTTTAGTCTTACAACTAGAAATTAATATAAAAGGTGTCGAGGAAGAAATTAATGCAGACTGTACAGATCGTTCCTGCAATTCTGGAAAGACATACAATGATCCCATATCACCCATGAACATGCAGCAACTTGACCAACCTAAGCTTATGAAGCTGAATCTAATTTGATACAGTTTTTTGCAGCCCCTACCCTGTCCCACCAACCAAAAGAAAAAAGAAAAAAAGATAGACAAATGAAAGGAAAATATGGGAAATAAA</genome_strand>
        <mrna_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAAACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310586" ref_strand="+" ref_description="SGN-E310586 [cLEZ-19-H16]">
      <seq>tttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatataagctctatgttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65132" stop="67968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65432" g_stop="65500" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67668" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="549" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E310586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65432" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTAC</genome_strand>
        <mrna_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATAAGCTCTATGTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348543" ref_strand="+" ref_description="SGN-E348543 [cTOF-30-F6]">
      <seq>tttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctaannnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65132" stop="67947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65432" g_stop="65500" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67646" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="527" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="547"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E348543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65432" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCT</genome_strand>
        <mrna_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284699" ref_strand="+" ref_description="SGN-E284699 [cLES-3-J1]">
      <seq>tttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttntggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctgggtttgttatgtttttcaattaaattgggtttcgattcacttatggattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65132" stop="67938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65432" g_stop="65500" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67638" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="519" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E284699" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65432" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGA</genome_strand>
        <mrna_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTNTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGGTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324864" ref_strand="+" ref_description="SGN-E324864 [cTOC-11-F11]">
      <seq>tttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65132" stop="67929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65432" g_stop="65500" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67629" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="510" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E324864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65432" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTAT</genome_strand>
        <mrna_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338520" ref_strand="+" ref_description="SGN-E338520 [cTOE-15-L20]">
      <seq>tttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttcctttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcaaaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65132" stop="67924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65432" g_stop="65500" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="171" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="200" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67624" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="506" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="517"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E338520" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65432" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCC-TTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCA</genome_strand>
        <mrna_strand>TTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372257" ref_strand="+" ref_description="SGN-E372257 [TUS-30-J21](-)">
      <seq>ttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65133" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65433" g_stop="65500" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="170" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="199" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="553" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="571"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E372257" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65433" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>TTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279581" ref_strand="+" ref_description="SGN-E279581 [cLER-5-H6]">
      <seq>ttcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagtttcggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65133" stop="67884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65433" g_stop="65500" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="170" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="199" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67584" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="464" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E279581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65433" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCT</genome_strand>
        <mrna_strand>TTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTCGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304196" ref_strand="+" ref_description="SGN-E304196 [cLEX-6-M19]">
      <seq>tcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttcctttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65134" stop="67999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65434" g_stop="65500" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67708" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="588" r_length="390" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E304196" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65434" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCC-TTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGA</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372258" ref_strand="+" ref_description="SGN-E372258 [TUS-30-J21]">
      <seq>tcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65134" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65434" g_stop="65500" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="552" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="572"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E372258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65434" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285587" ref_strand="+" ref_description="SGN-E285587 [cLES-5-O13]">
      <seq>tcagctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggagtatcctggctgttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65134" stop="67887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65434" g_stop="65500" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="169" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="198" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67587" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="466" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E285587" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65434" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGT</genome_strand>
        <mrna_strand>TCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGAGTATCCTGGCTGTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210635" ref_strand="+" ref_description="SGN-E210635 [cLEC-68-G18]">
      <seq>agctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65136" stop="67971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65436" g_stop="65500" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="167" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="196" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67671" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="548" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E210635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65436" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTA</genome_strand>
        <mrna_strand>AGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724624" ref_strand="+" ref_description="SGN-E724624 [FC24CG03]">
      <seq>ctgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcaaacggtcttgtgccagccaactggtgggcgtgctaaactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65138" stop="67951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65438" g_stop="65500" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="194" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67659" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="534" r_length="340" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E724624" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65438" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCT</genome_strand>
        <mrna_strand>CTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAAACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAAACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335787" ref_strand="+" ref_description="SGN-E335787 [cTOE-6-G5]">
      <seq>tgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaagagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaaatacttgatagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65139" stop="68008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65439" g_stop="65500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="164" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="193" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67707" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="581" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="591"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E335787" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65439" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAG</genome_strand>
        <mrna_strand>TGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAGAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAATACTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350616" ref_strand="+" ref_description="SGN-E350616 [cTOS-5-J24]">
      <seq>tgcctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65139" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65439" g_stop="65500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="164" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="193" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67682" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="556" r_length="363" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E350616" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65439" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCA</genome_strand>
        <mrna_strand>TGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267487" ref_strand="+" ref_description="SGN-E267487 [cLEI-8-F4]">
      <seq>cctccgacgctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65141" stop="67924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65441" g_stop="65500" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="162" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="191" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67624" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="496" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E267487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65441" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCA</genome_strand>
        <mrna_strand>CCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723789" ref_strand="+" ref_description="SGN-E723789 [FC21DG11]">
      <seq>gctcttcctccctcgccgccggacggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65149" stop="67922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65449" g_stop="65500" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="154" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="183" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67622" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="486" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E723789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65449" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATT</genome_strand>
        <mrna_strand>GCTCTTCCTCCCTCGCCGCCGGACGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716560" ref_strand="+" ref_description="SGN-E716560 [FB17BF07]">
      <seq>ctcttcctccctcgccgccggccggaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65150" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65450" g_stop="65500" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="153" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="182" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="536" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="567"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E716560" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65450" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>CTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304061" ref_strand="+" ref_description="SGN-E304061 [cLEX-6-M19](-)">
      <seq>gaatttcccgtttacctcgcgaaaatggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgagaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttcctttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65174" stop="67999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65474" g_stop="65500" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="129" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="158" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67707" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="547" r_length="389" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E304061" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65474" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCCCGTTTACCTCGCGAAAATGGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCC-TTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAG</genome_strand>
        <mrna_strand>GAATTTCCCGTTTACCTCGCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724530" ref_strand="+" ref_description="SGN-E724530 [FC24BE10]">
      <seq>aatttcccgtttacctcgcgaaaatgggttcttccaaacgatgtcgacttgttgaacccaccagctgagcatgaaaagagaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcaaacggtcttgtgccagccaactggtgggcgtgctaaactcaccaagggttgttctttcaggagaaagggagattatagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatctttaaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="65175" stop="67922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65475" g_stop="65500" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66453" g_stop="66554" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="129" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="158" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67320" g_stop="67622" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="461" r_length="303" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E724530" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65475" e_stop="65500"/>
          <exon e_start="66453" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCCGTTTACCTCGCGAAAAT-GGTGAGTTGATAGCTATAACAATTCGAATTACGTTCTAATGCTCTTCGTATTAAAATTGGAGCGCAATTGGTTAGATTTCAGCCATGGCGATTTGATTTTTGTTTTGATGTGTTCTGTTTCGACGTAATCTGGTAAAAAATTGTAGTGAAAATGACGAGTTCTTAGTTATGGCGATTAGAATTTCGTTCTAGTGTTCGTAATGTTACCTGTTATAAGTTGGACCGGAAATGGTGAATATTTAGCTTTACGTATTTGGATTTTTTGGTTCTAATGTTCTTTGTATTAACGTAATCTGTAAAAAATTGTAGCGAAGCTGGTTAGGTTTTAGTAGCGAGTTTTTAGCTATAGCGACTTGAAGCTTGCTCTAGTGTTCTCTGTATCAACGTAATTTGCTACAAATTGGAGCGAAAATGGTGAGCTTGTAGCTATGGAGTTCTGGATTTTGTTCTGATGTTTTTTGTATTAACATAATCTGTTCAAAATTTAAGCAATCAAGTTATGGCTATTCAAATTTTGTTTTTATGTTCTTAATGTTATTTGTTATAAGTTGGGGCAAAAATACTGAGCTTTTAGCTAAGGTGAATTGAAACTTGTTCTAATGTACTCTGTATTGATCTAATTTGCTACGAATTGGAGTGAAAATGGTGAGCTTTTAGCTATGGAGTTCTGGATTTTGTTCTGATGGTTTTTGTATTAACATAATTTGCTCAAAATTTAAGCAAACTGGTGAGATTTTAGTTATGGATATTCAAATGCTGTTCTTAATGTTATTTGTTATAAGTTGGACCAAAAATAGTGAGTTTTTAGCTATGGTGAATTGGAACTTGTTCTAATGTACTCTGTGTTGACCTAATTTGCTACGAATTGGAGTGGAATGGTGAGCTTTTAGCTATATGGAGATTTGGATTGTGTTCTAATGTTTTTTGTGTTAACGCAAAAATCTGATTTCAAGGTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATT</genome_strand>
        <mrna_strand>AATTTCCCGTTTACCTCGCGAAAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAAAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAAACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAAACTCACCAAGGGTTGTTCTTTCAGGAGAAAGGGAGATTATAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTAAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343508" ref_strand="+" ref_description="SGN-E343508 [cTOF-19-A14]">
      <seq>agaaagcacaagcttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="66204" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66504" g_stop="66554" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="80" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67320" g_stop="67681" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="442" r_length="362" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E343508" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66504" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCC</genome_strand>
        <mrna_strand>AGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339266" ref_strand="+" ref_description="SGN-E339266 [cTOF-4-M24]">
      <seq>ttaagcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtacttgataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="66217" stop="68008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66517" g_stop="66554" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="67" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67320" g_stop="67707" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="455" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E339266" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66517" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAG</genome_strand>
        <mrna_strand>TTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234957" ref_strand="+" ref_description="SGN-E234957 [cLEL-6-O11](-)">
      <seq>agcgtttggttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgtcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61630" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66520" g_stop="66554" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="64" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67320" g_stop="67673" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="417" r_length="353" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E234957" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66520" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>AGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGT-CAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343578" ref_strand="+" ref_description="SGN-E343578 [cTOF-20-C22]">
      <seq>ttcaatctcctaactctttcttcatggatgtgaagtgccagggttgctttaacataacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctacaatattcccatcaattactttgaagtacttgatagaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="61639" stop="68008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66529" g_stop="66554" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89">
            <donor d_prob="0.732" d_score="0.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66644" g_stop="66672" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="55" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67320" g_stop="67707" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="443" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="467"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E343578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66529" e_stop="66554"/>
          <exon e_start="66644" e_stop="66672"/>
          <exon e_start="67320" e_stop="67707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTCCTAACTCTTTCTTCATGGTAAAGGAAACGGTTTGTCAATGTATTTGTGGTTTGAATTAATTATTCTTGGAATTAATCTGTGATTTATTTGTTTTTTGGTCTTCTAGGATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAG</genome_strand>
        <mrna_strand>TTCAATCTCCTAACTCTTTCTTCATG.........................................................................................GATGTGAAGTGCCAGGGTTGCTTTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710635" ref_strand="+" ref_description="SGN-E710635 [FA56AB04]">
      <seq>ccttttaaggcacggttgctttaacatgtaagttcattttttcttgttcatttatcttagttggtgctttcgatatgaatttagtgacatttgggaaaagaaaatagtgattgaagttgtaaaatggttatggagaagttaagttgatgaatttagtgatgcttatgtaatagtaattgaagttgaaaaatgttatttgaaaaaatgaagttgatatctttagtgaaatttgaaataaaaaagtagtatttgaatgtaaaaatggtaatcgaacattagagtttggaaaaaaatatagcttttaagttgagtaatgtttaacttgtgtttgggatacatttcactttgttataagctccctacttcttttggctgaaaaaacaggccagctagttttatgtagtttggggaactcatcctaaaaatttaacagaaaagtcattctaatgtatataaacctaacaagtttttatgtactttttgaataaatggaaacaattttcatgtccatagtaaaaagtagaattttatgcacactaaccgaatgttttcggaaggatggtgggatatccaatcctcatcttggttcagtttcaacctcacctgcaataacatctctcttgtcatacaatgatatgttcaccctaagtcttattctctctctatatgtgcagaacaacggtgttcagccactcgcaaactgtggtggtgtgcgggaactgtcaaacggtcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="66346" stop="67682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66644" g_stop="67382" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E710635" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66644" e_stop="67382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTG</genome_strand>
        <mrna_strand>CCTTTTAAG-G-CACGGTTGCTTTAACATGTAAGTTCATTTTTTCTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTTGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTATGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTAGAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAAACGGTCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216123" ref_strand="+" ref_description="SGN-E216123 [cLEL-13-I16](-)">
      <seq>cagccactcgcaaactgtggtggtgtgcgggaactgtcagacggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="67032" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67332" g_stop="67673" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="358"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E216123" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67332" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>CAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234861" ref_strand="+" ref_description="SGN-E234861 [cLEL-6-O11](-)">
      <seq>ggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttaccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttcaacctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="67074" stop="105121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67374" g_stop="67692" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E234861" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67374" e_stop="67692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTT</genome_strand>
        <mrna_strand>GGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCAACCTCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216300" ref_strand="+" ref_description="SGN-E216300 [cLEL-13-O9](-)">
      <seq>ggtcttgtgccagccaactggtgggcgtgctagactcaccgagggttgttctttcaggagaaagggagattagagaagtaacaggcaattatttgcttttagagtgggaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttttaaagaacaaaggatttttagtttgccatgtctggttttgttatgtttttcaattaaattgggtttcgattcacttatggattttgaattttgctatatattagctctatgttctacctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="67074" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67374" g_stop="67673" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="316"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E216300" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67374" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>GGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTGCCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216155" ref_strand="+" ref_description="SGN-E216155 [cLEL-13-O9](-)">
      <seq>ggtgggcgtgctagcctcaccaagggttgttctttcaggagaaagggagattaaagaagtaacaggcaattatttgcttttagagtggcaagttaaaaaagtttatatgggtaacaaagtcagttttggtgtatcctggcttttccttttttgatcttgtaaagaacaaaggatttttagtttaccatgtctggttatgttatgtttttccattaaattgggttgcgattcgcttatgggttttgaattttgctatgtattagctctatgttctgcctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="67093" stop="67976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67393" g_stop="67673" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="282" polyA_stop="297"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E216155" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67393" e_stop="67673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACA</genome_strand>
        <mrna_strand>GGTGGGCGTGCTAGCCTCACCAAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAAAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGCAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTGTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTATGTTATGTTTTTCCATTAAATTGGGTTGCGATTCGCTTATGGGTTTTGAATTTTGCTATGTATTAGCTCTATGTTCTGCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696971" ref_strand="+" ref_description="SGN-E696971 [LH_Ea10I09](-)">
      <seq>agttttatcacagatcgcatcatcaccaaccattcgtcttggggcggagatgactatgaagcaaatagagaaccttagcccctcaattatgaagcaagtttttccgctggttgagcaactgactcctctatacacggacttgattaatggaaaagaaaatttcactccaagaccagaagaaactcaaagactgataaggtcctactacgggatttcgaggaatctcttagtaaagttcaaagatgatacaatcgacgaaacttcaacactagctcaggtgctcagctcaggttccgccatcagctcaatgctggatatgtctatccgcactcttcctggagaccatgcgcttcctctacaacaggctctaccaaatgctcctccaggaatgacggacgctgttaacaggagcagcgagttattggcgaacttgacagcaggaacaccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactctataatttttaattctgggaattcaaaggacttggatatgcttgtggagacaataacatcatggatgtactctaacacaggcccaaaacttttacagtgatatgctaaaaaaaatatatgtaaatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttaattgacatgtagtcttcatgtataataatgtgactaactttttgaaagtgtggtataaaaagatcaattatttgtaacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="70672" stop="68174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70372" g_stop="70330" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69859" g_stop="69710" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="193" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69709" i_stop="69290" i_length="420">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69289" g_stop="69119" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="364" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68866" g_stop="68468" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="759" r_length="395" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E696971" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70372" e_stop="70330"/>
          <exon e_start="69859" e_stop="69710"/>
          <exon e_start="69289" e_stop="69119"/>
          <exon e_start="68866" e_stop="68468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGGGTAAGTAGCTTAATTCACCAACTACCCAGCTTCTGTTCAACGTTCTTGTTAGATGACTTTCACATGTGACATTATGGATGTTTTTTCCTGGATAAACGGGTTGGATTGAGACTATTTTTGAGTCATCGGATGGATGGATGCCAAGAGTAGTAAAATTGCCTCTACTTAATTGTGTCATGTGCAATTGCTCAAACACAAACGATAAGAATTTCTAATCTAACTTGTATCCATGTCTACTCAACTGTCTCTTGAAAAAATGCTAATTGAGGAAGAGCATCCTTCATTTTCACATACTTGAAGGTTTTGTTCATTCTTTTGTGCCTTTGGTTGACCTTCACTTTTTTTGTTGGATGCTGTAGTTCAAACACTAGGTCACCCTGGTAGTTGTGTTAGTCACTTTTTCATAAACTTTCACATGAAACTGAATAAGAGATACCTTCTTTTGCTCCACTCATGTTCTATATCTACAGGCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTGGTATGGAAAATTTTGAGATCTTAATGCTCATAAACTATAGCTACATATTAAACTAGGTACATATCATGAACATCTTTAGGTCACTTTATTGCTACTTTTTGGTGTAACTTGTGTAGTGTTTATTTGTATGACCAATTCAATGACTACTATGCAAATGTAGAGCAGATACATGTAGGGATGCAATGGGGTGGGGCGGGCTTGTCCTTTTGGGGGCAGGTATGGGGTGGGGCGGGTTGCAGGTTTCACAAATCAGTTTCTTAACAAAATCCCTACCCAACACCCACTCACCCCGCCCCCAACCCAGTTCTTAAAAGTAGCAATTATGTCGTAGGAAATGGGATTATAGAGTAGCTTACACAAAATATATATCTTCATTGTCCATAATTATGTAACTTTTCTTATCTAATATGTACACTACAGATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTTGTAACTGGTAAGTGGTA</genome_strand>
        <mrna_strand>AGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATTATGAAGCAAGTTTTTCCGCTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTAAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAACAG............................................................................................................................................................................................................................................................GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGTTATTGGCGAACTTGACAGCAGGAACACCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTTTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACAGGCCCAAAACTTTTACAGTG--ATATGCTAAAAAAAATATATGTAAATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTAATTGACATGTAGTCTTCATGTATAATAATGTGACTAACTTTTTGAAAG-TGTGGTATAAAAAGATCAATTATTTGTAAC-GAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393227" ref_strand="-" ref_description="SGN-E393227 [TUS-38-O5]">
      <seq>caaagactgataaggtcctactacgggatttcgaggaatcttttagttaagttcaaagatgatacaatcgacgaaacttcaacactagctcaggtgctcagctcaggttccgccatcagctcaatgctggatatgtctatccgcactcttcctggagaccatgcgcttcctttacagcaggctttaccaaatgctcctccaggaatgacggacgctgttaacaggagcagcgagctattggcgaacttgacagcaggaacgccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactttataatttttaattttgggaattcaaaggacttggatatgcttgtggagacaataacatcatggatgtactttaacactggcccaaaacttttacagtgatatatgctaaaaaaaatatatgtatatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttgattgacatttagtactcatgtataataatgtgactaactttttgaatgttttggtataaaaaggtcaattatttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="69593" stop="68181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69298" g_stop="69119" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68866" g_stop="68485" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="562" r_length="382" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="594"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E393227" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393227" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69298" e_stop="69119"/>
          <exon e_start="68866" e_stop="68485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTACAGATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTT</genome_strand>
        <mrna_strand>CAAAGACTGATAAGGTCCTACTACGGGATTTCGAGGAATCTTTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTTTACAGCAG............................................................................................................................................................................................................................................................GCTTTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTTTATAATTTTTAATTTTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTTTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207784" ref_strand="-" ref_description="SGN-E207784 [cLEC-32-O24]">
      <seq>accaaatgctcctccaggaatgacggacgctgttaacaggagcagcgagctattggcgaacttgacagcaggaacgccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactctataattcttaattctgggaattcaaaggacttggatatgcttgtggagccaataacatcatggatgtactctaaccctggcccaaaacttttacagtgatatatgctaaaaaaaatatatgtatatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttgattgacatttagtactcatgtataataatgtgactaactttttgaatgttttggtataaaaaggtcaattatttgtaaaaaaaaaaaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="69161" stop="68181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68861" g_stop="68485" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="407"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E207784" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207784" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68861" e_stop="68485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTT</genome_strand>
        <mrna_strand>ACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGCCAATAACATCATGGATGTACTCTAACCCTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693820" ref_strand="+" ref_description="SGN-E693820 [LH_Ea02F02](-)">
      <seq>acaacaaggatgccagccttgcagtgccgttgttctcatctgttcttgttccaatgatgcaaaacttaggaccagttttatcacagatcgcatcatcaccaaccattcgtcttggggcggagatgactatgaagcaaatagagaaccttagcccctcaattatgaagcaagtttttccgctggttgagcaactgactcctctatacacggacttgattaatggaaaagaaaatttcactccaagaccagaagaaactcaaagactgataaggtcctactacgggatttcgaggaatcttttagtaaagttcaaagatgatacaatcgacgaaacttcaacactagctcaggtgctcagctcaggttccgccatcagctcaatgctggatatgtctatccgcactttttctggagaccatgcgcttcctttacaacaggctttaccaaatgctcctccaggaatgacggacgctgttaacaggagcagcgagttattggcgaacttgacagcaggaacaccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactctataatttttaattttgggaattcaaaggacttggatatgcttgtggagacaataacatcatggatgtactttaacacaggcccaaaacttttacagtgatatgctaaaaaaaatatatgtaaatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttaattgacatttagtcttcatgtataataatgtgactaacttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="70741" stop="68213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70437" g_stop="70330" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="116" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69859" g_stop="69710" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="266" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69709" i_stop="69290" i_length="420">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69289" g_stop="69119" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="437" r_length="171" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68866" g_stop="68498" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="803" r_length="366" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E693820" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70437" e_stop="70330"/>
          <exon e_start="69859" e_stop="69710"/>
          <exon e_start="69289" e_stop="69119"/>
          <exon e_start="68866" e_stop="68498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGGGTAAGTAGCTTAATTCACCAACTACCCAGCTTCTGTTCAACGTTCTTGTTAGATGACTTTCACATGTGACATTATGGATGTTTTTTCCTGGATAAACGGGTTGGATTGAGACTATTTTTGAGTCATCGGATGGATGGATGCCAAGAGTAGTAAAATTGCCTCTACTTAATTGTGTCATGTGCAATTGCTCAAACACAAACGATAAGAATTTCTAATCTAACTTGTATCCATGTCTACTCAACTGTCTCTTGAAAAAATGCTAATTGAGGAAGAGCATCCTTCATTTTCACATACTTGAAGGTTTTGTTCATTCTTTTGTGCCTTTGGTTGACCTTCACTTTTTTTGTTGGATGCTGTAGTTCAAACACTAGGTCACCCTGGTAGTTGTGTTAGTCACTTTTTCATAAACTTTCACATGAAACTGAATAAGAGATACCTTCTTTTGCTCCACTCATGTTCTATATCTACAGGCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTGGTATGGAAAATTTTGAGATCTTAATGCTCATAAACTATAGCTACATATTAAACTAGGTACATATCATGAACATCTTTAGGTCACTTTATTGCTACTTTTTGGTGTAACTTGTGTAGTGTTTATTTGTATGACCAATTCAATGACTACTATGCAAATGTAGAGCAGATACATGTAGGGATGCAATGGGGTGGGGCGGGCTTGTCCTTTTGGGGGCAGGTATGGGGTGGGGCGGGTTGCAGGTTTCACAAATCAGTTTCTTAACAAAATCCCTACCCAACACCCACTCACCCCGCCCCCAACCCAGTTCTTAAAAGTAGCAATTATGTCGTAGGAAATGGGATTATAGAGTAGCTTACACAAAATATATATCTTCATTGTCCATAATTATGTAACTTTTCTTATCTAATATGTACACTACAGATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAA</genome_strand>
        <mrna_strand>GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATTATGAAGCAAGTTTTTCCGCTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTCCTACTACGGGATTTCGAGGAATCTTTTAGTAAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTTTTTCTGGAGACCATGCGCTTCCTTTACAACAG............................................................................................................................................................................................................................................................GCTTTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGTTATTGGCGAACTTGACAGCAGGAACACCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTTTTAATTTTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTTTAACACAGGCCCAAAACTTTTACAGTG--ATATGCTAAAAAAAATATATGTAAATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTAATTGACATTTAGTCTTCATGTATAATAATGTGACTAAC-TTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733662" ref_strand="+" ref_description="SGN-E733662 [LB10CE01]">
      <seq>atgaaacttcaacactagctcaggtgctcagctcaggttccgccatcagctcaatgctggatatgtctatccgcactcttcctggagaccatgcgcttcctctacagcaggctctaccaaatgctcctccaggaatgacggacgctgttaacaggatcagcgagctattggcgaacttgacagcaggaacgccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactctataattcttaattctgggaattcaaaggacttggatatgcttgtggagacaataacatcatggatgtactctaacactggcccaaaacttttacagtgatatatgctaaaaaaaatatatgtatatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttgattgacatttagtactcatgtataataatgtgactaactttttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="69528" stop="68213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69228" g_stop="69119" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68866" g_stop="68500" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="477" r_length="367" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E733662" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69228" e_stop="69119"/>
          <exon e_start="68866" e_stop="68500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAA</genome_strand>
        <mrna_strand>ATGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG............................................................................................................................................................................................................................................................GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGATCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240042" ref_strand="+" ref_description="SGN-E240042 [cLED-32-K14]">
      <seq>taaggtcctactacgggatttcgaggaatctcttagttaagttcaaagatgatacaatcgacgaaacttcaacactagctcaggtgctcagctcaggttccgccatcagctcaatgctggatatgtctatccgcactcttcctggagaccatgcgcttcctctacagcaggctctaccaaatgctcctccaggaatgacggacgctgttaacaggagcagcgagctattggcgaacttgacagcaggaacgccatgggaaaacgtcacgaaggaagtcggcaatacgctcggtaatgtagactctataattcttaattctgggaattcaaaggacttggatatgcttgtggagacaataacatcatggatgtactctaacactggcccaaaacttttacagtgatatatgctaaaaaaaatatatgtatatgaaccctactgaatggttctgtaatttgtaatgattgtatatacttgattgacatttagtactcatgtataataatgtgactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="69588" stop="68221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69288" g_stop="69119" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68866" g_stop="68521" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="516" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E240042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69288" e_stop="69119"/>
          <exon e_start="68866" e_stop="68521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAAC</genome_strand>
        <mrna_strand>TAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG............................................................................................................................................................................................................................................................GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727025" ref_strand="+" ref_description="SGN-E727025 [LA13CA11]">
      <seq>acgaagctgtctccgcatctttcttaccgcctgttccttgagcggctcagacagaaggatgtcttggtgattgctacaccttatgctactggatttgaccatttctacattgcagatgaagtgcagtttaagtttgataggtgccttagatttctccaagaaagagtacaagaccttcctgtatttggcattgggcactctttaggatctgtaattcaccttttgattggagctagatatgctgcgaaaagaaacgggaatgtattgatggctttcaacaacaaggatgccaaccttgcagcgccgttgttctcatctgttcttgatccaatgatgcaaaacttaagaccagttttatcacaaatcgcatcatcaccaaccattcgtcttggggcggagatgactatgaagcaaatagagaaccttaccccctcaatcatgaagcaagtttttccactggttgagcaactgactcctctatacacggacttgattagtggaaaagaaaatttcactccgagaccataagaaactcaaagactgataaggtcctactacgggatttccaggaatctcttagttaagttcaaagatgatacaatcgatgaaacttcaacactagctcaggtgctcagctcacgttccgccatcaactcaatgctggatatgtctatccgcactcttcctggagaccatgcgcttcctctacagcaggctctaacaaatgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="73193" stop="68800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72898" g_stop="72844" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71959" g_stop="71851" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="165" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71774" g_stop="71711" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="229" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71625" g_stop="71570" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="285" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70437" g_stop="70330" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="393" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69859" g_stop="69710" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="543" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69709" i_stop="69290" i_length="420">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69289" g_stop="69119" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="714" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68866" g_stop="68849" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="732" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E727025" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72898" e_stop="72844"/>
          <exon e_start="71959" e_stop="71851"/>
          <exon e_start="71774" e_stop="71711"/>
          <exon e_start="71625" e_stop="71570"/>
          <exon e_start="70437" e_stop="70330"/>
          <exon e_start="69859" e_stop="69710"/>
          <exon e_start="69289" e_stop="69119"/>
          <exon e_start="68866" e_stop="68849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGCTG-CTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAAGTGAGTTGTTTGATCTTGATGCTAGGGTCCATCTTATTCTATCTATGTTTATTATGTGCTTATTATTTGAAAGCAGCATCACTTCTTTATTATATTTGTGATGTATATGCACCTTCGTATCATTCTGATTTATAGTTAGTTTTTCTATCTTTTTCGCATTGCTGATAAGCAGGATAGGAAAAGTAGAAGATTTTAACTAATTAGTGCACCAATGGGGTGCCGGTAATATTAATTTCTTCCATTCTCTCTTTCACTGTATTTAGAACTGGAAGGTTGACCTCTCAGATTTTCAGTAAGCCAGAGAAGTGCTCCTCTTTTTAAATAGTATCTTGTTAGATGATTCAGTAACGATTATGCACTTTCTCGTAGAAGTGTACCGAACTTTATCCAGTGGTTTACCAACTGAAGGCATGCTTTACTTCAGTAGTTGGTTTAATAGATTTCCAACTGTTTAATCAGACTTGTGCAGAAAATAGCTGTTTTGATCATACTTGCTAGCAAAGATATTTTTGCTATTGGTTGTATTAGCCTCCTGATGTCCATTCCAGCAGTGTCATTTTATAGCCCATGTCAGCCCCTATTGTGAGTTAAGTGGTCATGTTTTACTTAAGTAATTTGGTAAAGGGATTTCCAACTGTTTAATAAGACTTTAAAAAGCTAAGCTTCTTATGCTATTAGTTGTATTAGACTACCTGATACCCCATTCCAGCAGTATTATTCTATAAACTAGTATGCTAATACCTGATGATGGTAGCTATAATCCTTGTCCTGTTTTCTTGTCTCATCCGTTAAGTGGGGTAAATATAGTGCTTAGTCTTATTAACATTGTGAGACAGGGATATGTTGGTGTTGCAACAACTTACTTTTATTACATTCTGAGACAGGGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGAGTGAGTTTCAGCTTTTACCGAAGATGAGACTGTTTTATCATGCTTTGTTTCTTATGAATGTCCATTGGTGACATAGGTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTGGTAAGTTACTGTATCTCAGTAATATTTTTTACATAGAGGTAAATTTGGTCAACTTGGTCCACAACGTTTGATGCTTGATGCTCAGGAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAGGTACTTGATGGATTTATTTTCAGCTTTATCCTGAACTCGTACAACTTTAAAATCAGTTTTAGGGATGCAAAGACAGATACAAATGGAACTGATGCGCACAGGGTTTATTTCCCATATTTTCCTTTCATTTGTCTATCTTTTTTTCTTTTTTCTTTTGGTTGGTGGGACAGGGTAGGGGCTGCAAAAAACTGTATCAAATTAGATTCAGCTTCATAAGCTTAGGTTGGTCAAGTTGCTGCATGTTCATGGGTGATATGGGATCATTGTATGTCTTTCCAGAATTGCAGGAACGATCTGTACAGTCTGCATTAATTTCTTCCTCGACACCTTTTATATTAATTTCTAGTTGTAAGACTAAACCTAGGTATAGCATCTTAAATTGTGTGACTTATCCTCAACCCTGTTACAATTCTAGTTTCATCTGGCCTGAGCAAAATGAGGCTTCTTTAGAGTTCGTTATGCTTCAGTTACATCGAGTAGCAGAGTTAGAAGTTTATGTGTAATTTGCTTTTAGGCAGCTTATCATATAAAGGGGAAATATTCTGCACTCTCTTGTGTTTGAATGATGGAGACTTGTCCTTAGTTTGAACTTCTATATTCCAAATCTTATACAACAACATCTATGCCTTAGTCCCAAATAAGTTGGGGTCATCTATATGAATCCTCACTGAGTCAGCGTGTTCCTCATTTAAATTCTAGAACTTGTAGGAAAAGGAAAGTAGAAAACATTGATGGACCTAGCTATGAGAATATTGTAAATTGGTTGAATCAAAGCTTTTGCTTTTATTGGGTTTCATTTGTGGAGAACCATATTTTGGTGTAAGTTGTGTGTTTTTTGGTATACGGCTTGTTATAAGAGGATCTCCCCATCATTAATAACATTGTTCACCTTATAAAAAGAATTCAAGTTACTGCTTTTATACTCATCATGTAGATGTTCATGCAAGTAAAAAACAGTAATACATGTACATGTTTTAGGTCTCCTGTTAGACCACCAGGAGTTTCAGTTTCTGGACATTTTAATGTGCACAATAATATATGTGTGCTGAAGCCCCGCAGCGTGGGTAATCCATCACCATCTTAGCATATTATTGGAACTCTTAACAAGCTTCCTATTACTTTGTTTTCACAGGATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGGGTAAGTAGCTTAATTCACCAACTACCCAGCTTCTGTTCAACGTTCTTGTTAGATGACTTTCACATGTGACATTATGGATGTTTTTTCCTGGATAAACGGGTTGGATTGAGACTATTTTTGAGTCATCGGATGGATGGATGCCAAGAGTAGTAAAATTGCCTCTACTTAATTGTGTCATGTGCAATTGCTCAAACACAAACGATAAGAATTTCTAATCTAACTTGTATCCATGTCTACTCAACTGTCTCTTGAAAAAATGCTAATTGAGGAAGAGCATCCTTCATTTTCACATACTTGAAGGTTTTGTTCATTCTTTTGTGCCTTTGGTTGACCTTCACTTTTTTTGTTGGATGCTGTAGTTCAAACACTAGGTCACCCTGGTAGTTGTGTTAGTCACTTTTTCATAAACTTTCACATGAAACTGAATAAGAGATACCTTCTTTTGCTCCACTCATGTTCTATATCTACAGGCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTGGTATGGAAAATTTTGAGATCTTAATGCTCATAAACTATAGCTACATATTAAACTAGGTACATATCATGAACATCTTTAGGTCACTTTATTGCTACTTTTTGGTGTAACTTGTGTAGTGTTTATTTGTATGACCAATTCAATGACTACTATGCAAATGTAGAGCAGATACATGTAGGGATGCAATGGGGTGGGGCGGGCTTGTCCTTTTGGGGGCAGGTATGGGGTGGGGCGGGTTGCAGGTTTCACAAATCAGTTTCTTAACAAAATCCCTACCCAACACCCACTCACCCCGCCCCCAACCCAGTTCTTAAAAGTAGCAATTATGTCGTAGGAAATGGGATTATAGAGTAGCTTACACAAAATATATATCTTCATTGTCCATAATTATGTAACTTTTCTTATCTAATATGTACACTACAGATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAGGTTCACCCTAAACTACGAAACTCAGTGAAATGGAAGTCCATCTCATCTAGTTTCAATAATTTATGTGATGTACTTTCCTTTTTAGTTTGCCCAAAAAGAATGATATAACTTCTCATTTACCTTTAATGAGACGAGTTTTATAGCTACATAAATTGGGACGAGACGGGACGGAGGGACTCTGCTGGCACATTCATGCATTTTTCAGAGGTTGAAACAATGTACACCATATCTTACCTTTCTTTCAACTTTCAGGCTCTACCAAATGCTCCT</genome_strand>
        <mrna_strand>ACGAAGCTGTCTCCGCATCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCTTGGTGATTGCTACACCTTATGCTACTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA............................................................................GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG.....................................................................................GAGCTAGATATGCTGCGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAACCTTGCAGCGCCGTTGTTCTCATCTGTTCTTGATCCAATGATGCAAAACTTAAGACCAGTTTTATCACAAATCGCATCATCACCAACCATTCGTCTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGACTATGAAGCAAATAGAGAACCTTACCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAGTGGAAAAGAAAATTTCACTCCGAGACCATAAGAAACTCAAAGACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTCCTACTACGGGATTTCCAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGATGAAACTTCAACACTAGCTCAGGTGCTCAGCTCACGTTCCGCCATCAACTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG............................................................................................................................................................................................................................................................GCTCTAACAAATGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719749" ref_strand="+" ref_description="SGN-E719749 [FC08DB03]">
      <seq>gggcgattggcggccaatcggccgaattgaacttgcgtagttgccatttaaggcgtcactgctcccaaggcgaattggcgatgttcgccggcgatttcgttctactccgattccactaaactctacaatcggagcagcatccgcttctacgccggaaaccggaactccagcagaatcagatgcaacttgaaagctaccggcagcagcaacaatcagccggaaacaagtaccggaatccagctatatagagatattgagagattacttacagagacagtgaagcaatctcaagattggggaagttcacaggactgggatgaaatcgagggagcatgggtattgcaaccaaaaacatcaaagccgaagttagtcgtacattttattggaggtgtttttgttggggctgctccgcagctttcttaccgcctgttccttgagcggctcagacagaaggatgtcttggtgattgctacaccttatgctagtggatttgaccatttctacattgcagatgaagtgcagtttaagtttgataggtgccttagatttctccaagaaagagtacaagaccttcctgtatttggcattgggcactctttaggatctgtaattcaccttttgattggagctagatatgctgtgaaaagaaacgggaatgtattgatggctttcaacaacaaggatgccagccttgcagtgccgttgttctcatctgttcttgttccaatgatgcaaaacttaggaccagttttatcacagatcgcatcatcaccaaccattcgtcttggggcggagatgactatgaagcaaatagagaaccttagcccctcaatcatgaagcaagtttttccactggttgagcaactgactcctctatacacggacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75755" stop="69459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75444" g_stop="75225" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="260" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73529" g_stop="73463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="327" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72968" g_stop="72844" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="452" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71959" g_stop="71851" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="561" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71774" g_stop="71711" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="625" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71625" g_stop="71570" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="681" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70437" g_stop="70330" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="789" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69859" g_stop="69759" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="890" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E719749" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75444" e_stop="75225"/>
          <exon e_start="73529" e_stop="73463"/>
          <exon e_start="72968" e_stop="72844"/>
          <exon e_start="71959" e_stop="71851"/>
          <exon e_start="71774" e_stop="71711"/>
          <exon e_start="71625" e_stop="71570"/>
          <exon e_start="70437" e_stop="70330"/>
          <exon e_start="69859" e_stop="69759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAGGTCTGTTGCCCTAATCGCTCGATTACTTACTAGTCAATACTTGTAGTAATTTCTGGCGGAACTTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTTAAAATATCCTATTGTTTTGAAATAAGATCTAAATATTATTTTATTATTTTGTTAATCATTATCTTCATCAAATACGTGTCGCCTCCCACCAACGTGTATTAGGTAACTGTTCCACCAAAGCTAGGACATGTGGGAGAGGAAGTTACCTAGTGTTTTTTTTCTTCGTTGGAGTTTGAACCTGAGACCTCATGATTCTTATCCGCTTCATTGATAGCTAGTCCACACCCTTGAGTGCATAAGATCTACATATTTAGAAACAACTGAAAGAGTAGTTGACTAAAAGTTAACAATTAAAAGTATACAAAAAAAAATTGTGGTGAAAGGTGGAAAGCGGCAGTATTTGTAGCTAAATGGAATGAGTTGCTATACCAAAAGACTGCTATAACAATTACAAACTTCAAGTTGGATAAAAAAGAATGTCGATAAATATGGTTTGCGACATATTTTTCCTCTTCCATCCCTCTGTCCTTAATAAGCAACACAAATACATTATAATTGAGCTGTGCAAAGTGAGCTCGACGGCTTAAAGATTAGCCATAGTTTCCTCCTTGTGCCTAAGGCAATTGCGCAATAGGACAGTATTGGCACAAAAACCAGGACAACCCCCATAAATTGCCTTTTTGAAGGAAGAATAACTGTTGGAGGTAAGTATCAGAACAAGAAAGAAGACAAAAAAAGGAATCGTTTATCATGTGCGCACCTTTAGCGGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAGGAATCGTCGCACATGCCGAAGTTGGCATTTCAAGGAAAGGTGACATTATGAATATAATCTCACTCTTAATGAACCTTATGTCTTGTACACGTTGACTTGCCATCAAGGCTCTTAACCCTTTTTATGGATCAGTTCTGCCGTCTACGTGCTATTACCTGTTTGTTAATAAATCAAAAAGTACTTCTAACATTACAGTAATGGCCCTACAGCTAGAAAAATAAATCGAAAGCAATGCTACAATTATGTTAGCTGTTTTTAGCAACTACATTTTGTATGTGAAATTGTGAATGCACAAACTGATGGACGCATGCACTTGGATATTATATAATTGGAATCTTGGTGATGAATTTTTACTTGCTTTTTTAGTTCATTGGTATGATTAGTCGTGTTTTTCTAACCTAATCTATCCATAATGTCAATTATACACGGCCATATATGATTGTGAATTTGGAGTTCTAATCAGATGATTGGTGATTCTTGACTTACCATTGTCAGTTATACAGTGTCCTTTTTCGCTCATGAAACCTAAAAAGAAACTACTGATCATGTTTATTCACAGATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAGGTTACTAAAGGAATTCCCTAAAAATATGCTTTAGTTTCAGAAGAATTGAATCATGAAAATTCTTTCCTTTTGTGTAAATTTACAAGTGTATTGATATGCAATTTGCATCCTTTATCTCTTACCCCAATTTTGCGTTACTTAAAACCATTTTTCGGTTGTAACCTTTAAACAACCTTTTGTCTTCCAAATAAGCTTAAAGACAAAAAAGAACTATCTAGTTTGAGAGGGCACATAATTACTGTTAGATTTGAAGGAATCGGTCATGATGCAACTTGCGTAGTAAGCATAATGTTGGATCAATATATGTTATGTGATTATAATGTGTGTCTGGAATGGACGTTTATATGATACAATTTCAACTGTGTGACAGTAAATAAGATAGTAGGTTGCTTGTGAAGGAGAACAAGGACGGTGGCCCACACATCCATGTTCTATATACATGTTAGAATACTCTGATGAATTATAAATGAAATAAACTCAGTTTGCTATTACAGGGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAAGTGAGTTGTTTGATCTTGATGCTAGGGTCCATCTTATTCTATCTATGTTTATTATGTGCTTATTATTTGAAAGCAGCATCACTTCTTTATTATATTTGTGATGTATATGCACCTTCGTATCATTCTGATTTATAGTTAGTTTTTCTATCTTTTTCGCATTGCTGATAAGCAGGATAGGAAAAGTAGAAGATTTTAACTAATTAGTGCACCAATGGGGTGCCGGTAATATTAATTTCTTCCATTCTCTCTTTCACTGTATTTAGAACTGGAAGGTTGACCTCTCAGATTTTCAGTAAGCCAGAGAAGTGCTCCTCTTTTTAAATAGTATCTTGTTAGATGATTCAGTAACGATTATGCACTTTCTCGTAGAAGTGTACCGAACTTTATCCAGTGGTTTACCAACTGAAGGCATGCTTTACTTCAGTAGTTGGTTTAATAGATTTCCAACTGTTTAATCAGACTTGTGCAGAAAATAGCTGTTTTGATCATACTTGCTAGCAAAGATATTTTTGCTATTGGTTGTATTAGCCTCCTGATGTCCATTCCAGCAGTGTCATTTTATAGCCCATGTCAGCCCCTATTGTGAGTTAAGTGGTCATGTTTTACTTAAGTAATTTGGTAAAGGGATTTCCAACTGTTTAATAAGACTTTAAAAAGCTAAGCTTCTTATGCTATTAGTTGTATTAGACTACCTGATACCCCATTCCAGCAGTATTATTCTATAAACTAGTATGCTAATACCTGATGATGGTAGCTATAATCCTTGTCCTGTTTTCTTGTCTCATCCGTTAAGTGGGGTAAATATAGTGCTTAGTCTTATTAACATTGTGAGACAGGGATATGTTGGTGTTGCAACAACTTACTTTTATTACATTCTGAGACAGGGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGAGTGAGTTTCAGCTTTTACCGAAGATGAGACTGTTTTATCATGCTTTGTTTCTTATGAATGTCCATTGGTGACATAGGTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTGGTAAGTTACTGTATCTCAGTAATATTTTTTACATAGAGGTAAATTTGGTCAACTTGGTCCACAACGTTTGATGCTTGATGCTCAGGAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAGGTACTTGATGGATTTATTTTCAGCTTTATCCTGAACTCGTACAACTTTAAAATCAGTTTTAGGGATGCAAAGACAGATACAAATGGAACTGATGCGCACAGGGTTTATTTCCCATATTTTCCTTTCATTTGTCTATCTTTTTTTCTTTTTTCTTTTGGTTGGTGGGACAGGGTAGGGGCTGCAAAAAACTGTATCAAATTAGATTCAGCTTCATAAGCTTAGGTTGGTCAAGTTGCTGCATGTTCATGGGTGATATGGGATCATTGTATGTCTTTCCAGAATTGCAGGAACGATCTGTACAGTCTGCATTAATTTCTTCCTCGACACCTTTTATATTAATTTCTAGTTGTAAGACTAAACCTAGGTATAGCATCTTAAATTGTGTGACTTATCCTCAACCCTGTTACAATTCTAGTTTCATCTGGCCTGAGCAAAATGAGGCTTCTTTAGAGTTCGTTATGCTTCAGTTACATCGAGTAGCAGAGTTAGAAGTTTATGTGTAATTTGCTTTTAGGCAGCTTATCATATAAAGGGGAAATATTCTGCACTCTCTTGTGTTTGAATGATGGAGACTTGTCCTTAGTTTGAACTTCTATATTCCAAATCTTATACAACAACATCTATGCCTTAGTCCCAAATAAGTTGGGGTCATCTATATGAATCCTCACTGAGTCAGCGTGTTCCTCATTTAAATTCTAGAACTTGTAGGAAAAGGAAAGTAGAAAACATTGATGGACCTAGCTATGAGAATATTGTAAATTGGTTGAATCAAAGCTTTTGCTTTTATTGGGTTTCATTTGTGGAGAACCATATTTTGGTGTAAGTTGTGTGTTTTTTGGTATACGGCTTGTTATAAGAGGATCTCCCCATCATTAATAACATTGTTCACCTTATAAAAAGAATTCAAGTTACTGCTTTTATACTCATCATGTAGATGTTCATGCAAGTAAAAAACAGTAATACATGTACATGTTTTAGGTCTCCTGTTAGACCACCAGGAGTTTCAGTTTCTGGACATTTTAATGTGCACAATAATATATGTGTGCTGAAGCCCCGCAGCGTGGGTAATCCATCACCATCTTAGCATATTATTGGAACTCTTAACAAGCTTCCTATTACTTTGTTTTCACAGGATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGGGTAAGTAGCTTAATTCACCAACTACCCAGCTTCTGTTCAACGTTCTTGTTAGATGACTTTCACATGTGACATTATGGATGTTTTTTCCTGGATAAACGGGTTGGATTGAGACTATTTTTGAGTCATCGGATGGATGGATGCCAAGAGTAGTAAAATTGCCTCTACTTAATTGTGTCATGTGCAATTGCTCAAACACAAACGATAAGAATTTCTAATCTAACTTGTATCCATGTCTACTCAACTGTCTCTTGAAAAAATGCTAATTGAGGAAGAGCATCCTTCATTTTCACATACTTGAAGGTTTTGTTCATTCTTTTGTGCCTTTGGTTGACCTTCACTTTTTTTGTTGGATGCTGTAGTTCAAACACTAGGTCACCCTGGTAGTTGTGTTAGTCACTTTTTCATAAACTTTCACATGAAACTGAATAAGAGATACCTTCTTTTGCTCCACTCATGTTCTATATCTACAGGCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGAT</genome_strand>
        <mrna_strand>TTGCCATTTAAGGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA............................................................................GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG.....................................................................................GAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693131" ref_strand="+" ref_description="SGN-E693131 [LH_Ea10I09]">
      <seq>ttaccaaggcgaattggcgatgttcgccggcgatttccttctactccggttccaataaattctacaatcggagcagcatccgcttctacgccggaaaccggaactccagcagaatcagatgcaacttgaaagttaccggcagcagcaacaatcagccggaaacaactaccggaatccagctatatagagatattgagagattacttacagagacagtgaagcaatctcaagattggggaagttcacaggactgggatgaaatcgagggagcatgggtattgcaaccaaaaacatcaaagccgaagttagtcatacattttattggaggtgtttttgttggggctgctccgcagctttcttaccgcctgttccttgagcggctcagacagaaggatgtcttggtgattgctacaccttatgctagtggatttgaccatttctacattgcagatgaagtgcagtttaagtttgataggtgccttagatttctccaagaaagagtacaagaccttcctgtatttggcattgggcactctttaggatctgtaattcaccttttgattggagctagatatgctgtgaaaagaaacgggaatgtattgatggctttcaacaacaaggatgccagccttgcagtgccgttgttctcatctgttcttgttccaatgatgcaaaacttaggaccagttttatcacagatcgcatcatcacccaccattcgtcttggggcggagatgactatgaagcaaatagagaaccttagcccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75722" stop="69519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75423" g_stop="75225" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73529" g_stop="73463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="266" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72968" g_stop="72844" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="391" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71959" g_stop="71851" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="500" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71774" g_stop="71711" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="564" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71625" g_stop="71570" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="620" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70437" g_stop="70330" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="728" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69859" g_stop="69819" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="769" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E693131" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75423" e_stop="75225"/>
          <exon e_start="73529" e_stop="73463"/>
          <exon e_start="72968" e_stop="72844"/>
          <exon e_start="71959" e_stop="71851"/>
          <exon e_start="71774" e_stop="71711"/>
          <exon e_start="71625" e_stop="71570"/>
          <exon e_start="70437" e_stop="70330"/>
          <exon e_start="69859" e_stop="69819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAGGTCTGTTGCCCTAATCGCTCGATTACTTACTAGTCAATACTTGTAGTAATTTCTGGCGGAACTTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTTAAAATATCCTATTGTTTTGAAATAAGATCTAAATATTATTTTATTATTTTGTTAATCATTATCTTCATCAAATACGTGTCGCCTCCCACCAACGTGTATTAGGTAACTGTTCCACCAAAGCTAGGACATGTGGGAGAGGAAGTTACCTAGTGTTTTTTTTCTTCGTTGGAGTTTGAACCTGAGACCTCATGATTCTTATCCGCTTCATTGATAGCTAGTCCACACCCTTGAGTGCATAAGATCTACATATTTAGAAACAACTGAAAGAGTAGTTGACTAAAAGTTAACAATTAAAAGTATACAAAAAAAAATTGTGGTGAAAGGTGGAAAGCGGCAGTATTTGTAGCTAAATGGAATGAGTTGCTATACCAAAAGACTGCTATAACAATTACAAACTTCAAGTTGGATAAAAAAGAATGTCGATAAATATGGTTTGCGACATATTTTTCCTCTTCCATCCCTCTGTCCTTAATAAGCAACACAAATACATTATAATTGAGCTGTGCAAAGTGAGCTCGACGGCTTAAAGATTAGCCATAGTTTCCTCCTTGTGCCTAAGGCAATTGCGCAATAGGACAGTATTGGCACAAAAACCAGGACAACCCCCATAAATTGCCTTTTTGAAGGAAGAATAACTGTTGGAGGTAAGTATCAGAACAAGAAAGAAGACAAAAAAAGGAATCGTTTATCATGTGCGCACCTTTAGCGGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAGGAATCGTCGCACATGCCGAAGTTGGCATTTCAAGGAAAGGTGACATTATGAATATAATCTCACTCTTAATGAACCTTATGTCTTGTACACGTTGACTTGCCATCAAGGCTCTTAACCCTTTTTATGGATCAGTTCTGCCGTCTACGTGCTATTACCTGTTTGTTAATAAATCAAAAAGTACTTCTAACATTACAGTAATGGCCCTACAGCTAGAAAAATAAATCGAAAGCAATGCTACAATTATGTTAGCTGTTTTTAGCAACTACATTTTGTATGTGAAATTGTGAATGCACAAACTGATGGACGCATGCACTTGGATATTATATAATTGGAATCTTGGTGATGAATTTTTACTTGCTTTTTTAGTTCATTGGTATGATTAGTCGTGTTTTTCTAACCTAATCTATCCATAATGTCAATTATACACGGCCATATATGATTGTGAATTTGGAGTTCTAATCAGATGATTGGTGATTCTTGACTTACCATTGTCAGTTATACAGTGTCCTTTTTCGCTCATGAAACCTAAAAAGAAACTACTGATCATGTTTATTCACAGATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAGGTTACTAAAGGAATTCCCTAAAAATATGCTTTAGTTTCAGAAGAATTGAATCATGAAAATTCTTTCCTTTTGTGTAAATTTACAAGTGTATTGATATGCAATTTGCATCCTTTATCTCTTACCCCAATTTTGCGTTACTTAAAACCATTTTTCGGTTGTAACCTTTAAACAACCTTTTGTCTTCCAAATAAGCTTAAAGACAAAAAAGAACTATCTAGTTTGAGAGGGCACATAATTACTGTTAGATTTGAAGGAATCGGTCATGATGCAACTTGCGTAGTAAGCATAATGTTGGATCAATATATGTTATGTGATTATAATGTGTGTCTGGAATGGACGTTTATATGATACAATTTCAACTGTGTGACAGTAAATAAGATAGTAGGTTGCTTGTGAAGGAGAACAAGGACGGTGGCCCACACATCCATGTTCTATATACATGTTAGAATACTCTGATGAATTATAAATGAAATAAACTCAGTTTGCTATTACAGGGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAAGTGAGTTGTTTGATCTTGATGCTAGGGTCCATCTTATTCTATCTATGTTTATTATGTGCTTATTATTTGAAAGCAGCATCACTTCTTTATTATATTTGTGATGTATATGCACCTTCGTATCATTCTGATTTATAGTTAGTTTTTCTATCTTTTTCGCATTGCTGATAAGCAGGATAGGAAAAGTAGAAGATTTTAACTAATTAGTGCACCAATGGGGTGCCGGTAATATTAATTTCTTCCATTCTCTCTTTCACTGTATTTAGAACTGGAAGGTTGACCTCTCAGATTTTCAGTAAGCCAGAGAAGTGCTCCTCTTTTTAAATAGTATCTTGTTAGATGATTCAGTAACGATTATGCACTTTCTCGTAGAAGTGTACCGAACTTTATCCAGTGGTTTACCAACTGAAGGCATGCTTTACTTCAGTAGTTGGTTTAATAGATTTCCAACTGTTTAATCAGACTTGTGCAGAAAATAGCTGTTTTGATCATACTTGCTAGCAAAGATATTTTTGCTATTGGTTGTATTAGCCTCCTGATGTCCATTCCAGCAGTGTCATTTTATAGCCCATGTCAGCCCCTATTGTGAGTTAAGTGGTCATGTTTTACTTAAGTAATTTGGTAAAGGGATTTCCAACTGTTTAATAAGACTTTAAAAAGCTAAGCTTCTTATGCTATTAGTTGTATTAGACTACCTGATACCCCATTCCAGCAGTATTATTCTATAAACTAGTATGCTAATACCTGATGATGGTAGCTATAATCCTTGTCCTGTTTTCTTGTCTCATCCGTTAAGTGGGGTAAATATAGTGCTTAGTCTTATTAACATTGTGAGACAGGGATATGTTGGTGTTGCAACAACTTACTTTTATTACATTCTGAGACAGGGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGAGTGAGTTTCAGCTTTTACCGAAGATGAGACTGTTTTATCATGCTTTGTTTCTTATGAATGTCCATTGGTGACATAGGTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTGGTAAGTTACTGTATCTCAGTAATATTTTTTACATAGAGGTAAATTTGGTCAACTTGGTCCACAACGTTTGATGCTTGATGCTCAGGAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAGGTACTTGATGGATTTATTTTCAGCTTTATCCTGAACTCGTACAACTTTAAAATCAGTTTTAGGGATGCAAAGACAGATACAAATGGAACTGATGCGCACAGGGTTTATTTCCCATATTTTCCTTTCATTTGTCTATCTTTTTTTCTTTTTTCTTTTGGTTGGTGGGACAGGGTAGGGGCTGCAAAAAACTGTATCAAATTAGATTCAGCTTCATAAGCTTAGGTTGGTCAAGTTGCTGCATGTTCATGGGTGATATGGGATCATTGTATGTCTTTCCAGAATTGCAGGAACGATCTGTACAGTCTGCATTAATTTCTTCCTCGACACCTTTTATATTAATTTCTAGTTGTAAGACTAAACCTAGGTATAGCATCTTAAATTGTGTGACTTATCCTCAACCCTGTTACAATTCTAGTTTCATCTGGCCTGAGCAAAATGAGGCTTCTTTAGAGTTCGTTATGCTTCAGTTACATCGAGTAGCAGAGTTAGAAGTTTATGTGTAATTTGCTTTTAGGCAGCTTATCATATAAAGGGGAAATATTCTGCACTCTCTTGTGTTTGAATGATGGAGACTTGTCCTTAGTTTGAACTTCTATATTCCAAATCTTATACAACAACATCTATGCCTTAGTCCCAAATAAGTTGGGGTCATCTATATGAATCCTCACTGAGTCAGCGTGTTCCTCATTTAAATTCTAGAACTTGTAGGAAAAGGAAAGTAGAAAACATTGATGGACCTAGCTATGAGAATATTGTAAATTGGTTGAATCAAAGCTTTTGCTTTTATTGGGTTTCATTTGTGGAGAACCATATTTTGGTGTAAGTTGTGTGTTTTTTGGTATACGGCTTGTTATAAGAGGATCTCCCCATCATTAATAACATTGTTCACCTTATAAAAAGAATTCAAGTTACTGCTTTTATACTCATCATGTAGATGTTCATGCAAGTAAAAAACAGTAATACATGTACATGTTTTAGGTCTCCTGTTAGACCACCAGGAGTTTCAGTTTCTGGACATTTTAATGTGCACAATAATATATGTGTGCTGAAGCCCCGCAGCGTGGGTAATCCATCACCATCTTAGCATATTATTGGAACTCTTAACAAGCTTCCTATTACTTTGTTTTCACAGGATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGGGTAAGTAGCTTAATTCACCAACTACCCAGCTTCTGTTCAACGTTCTTGTTAGATGACTTTCACATGTGACATTATGGATGTTTTTTCCTGGATAAACGGGTTGGATTGAGACTATTTTTGAGTCATCGGATGGATGGATGCCAAGAGTAGTAAAATTGCCTCTACTTAATTGTGTCATGTGCAATTGCTCAAACACAAACGATAAGAATTTCTAATCTAACTTGTATCCATGTCTACTCAACTGTCTCTTGAAAAAATGCTAATTGAGGAAGAGCATCCTTCATTTTCACATACTTGAAGGTTTTGTTCATTCTTTTGTGCCTTTGGTTGACCTTCACTTTTTTTGTTGGATGCTGTAGTTCAAACACTAGGTCACCCTGGTAGTTGTGTTAGTCACTTTTTCATAAACTTTCACATGAAACTGAATAAGAGATACCTTCTTTTGCTCCACTCATGTTCTATATCTACAGGCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTC</genome_strand>
        <mrna_strand>TTACCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCCTTCTACTCCGGTTCCAATAAATTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGTTACCGGCAGCAGCAACAATCAGCCGGAAACAACTACCGGAATCCAGCTATATAGAGATATTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCATACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA............................................................................GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG.....................................................................................GAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCCACCATTCGTCTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393444" ref_strand="-" ref_description="SGN-E393444 [TUS-38-O5](-)">
      <seq>tgcaatgaactgcgtcactgctcccaaggcgaattggcgatgttcgccggcgatttcgttctactccgattccactaaactctacaatcggagcagcatccgcttctacgccggaaaccggaactccagcagaatcagatgcaacttgaaagctaccggcagcagcaacaatcagccggaaacaagtaccggaatccagctatatagagatattgagagattacttacagagacagtgaagcaatctcaagattggggaagttcacaggactgggatgaaatcgagggagcatgggtattgcaaccaaaaacatcaaagccgaagttagtcgtacattttattggaggtgtttttgttggggctgctccgcagctttcttaccgcctgttccttgagcggctcagacagaaggatgtcttggtgattgctacaccttatgctagtggatttgaccatttctacattgcagatgaagtgcagtttaagtttgataggtgccttagatttctccaagaaagagtacaagaccttcctgtatttggcattgggcactctttaggatctgtaattcaccttttgattggagctagatatgctgtgaaaagaaacgggaatgtattgatggctttcaacaacaaggatgccagccttgcagtgccgttgttctcatctgttcttgttccaatgatgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75743" stop="70082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75443" g_stop="75225" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73529" g_stop="73463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="286" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72968" g_stop="72844" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="411" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71959" g_stop="71851" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="520" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71774" g_stop="71711" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="584" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71625" g_stop="71570" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="640" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70437" g_stop="70382" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="696" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E393444" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393444" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75443" e_stop="75225"/>
          <exon e_start="73529" e_stop="73463"/>
          <exon e_start="72968" e_stop="72844"/>
          <exon e_start="71959" e_stop="71851"/>
          <exon e_start="71774" e_stop="71711"/>
          <exon e_start="71625" e_stop="71570"/>
          <exon e_start="70437" e_stop="70382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAGGTCTGTTGCCCTAATCGCTCGATTACTTACTAGTCAATACTTGTAGTAATTTCTGGCGGAACTTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTTAAAATATCCTATTGTTTTGAAATAAGATCTAAATATTATTTTATTATTTTGTTAATCATTATCTTCATCAAATACGTGTCGCCTCCCACCAACGTGTATTAGGTAACTGTTCCACCAAAGCTAGGACATGTGGGAGAGGAAGTTACCTAGTGTTTTTTTTCTTCGTTGGAGTTTGAACCTGAGACCTCATGATTCTTATCCGCTTCATTGATAGCTAGTCCACACCCTTGAGTGCATAAGATCTACATATTTAGAAACAACTGAAAGAGTAGTTGACTAAAAGTTAACAATTAAAAGTATACAAAAAAAAATTGTGGTGAAAGGTGGAAAGCGGCAGTATTTGTAGCTAAATGGAATGAGTTGCTATACCAAAAGACTGCTATAACAATTACAAACTTCAAGTTGGATAAAAAAGAATGTCGATAAATATGGTTTGCGACATATTTTTCCTCTTCCATCCCTCTGTCCTTAATAAGCAACACAAATACATTATAATTGAGCTGTGCAAAGTGAGCTCGACGGCTTAAAGATTAGCCATAGTTTCCTCCTTGTGCCTAAGGCAATTGCGCAATAGGACAGTATTGGCACAAAAACCAGGACAACCCCCATAAATTGCCTTTTTGAAGGAAGAATAACTGTTGGAGGTAAGTATCAGAACAAGAAAGAAGACAAAAAAAGGAATCGTTTATCATGTGCGCACCTTTAGCGGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAGGAATCGTCGCACATGCCGAAGTTGGCATTTCAAGGAAAGGTGACATTATGAATATAATCTCACTCTTAATGAACCTTATGTCTTGTACACGTTGACTTGCCATCAAGGCTCTTAACCCTTTTTATGGATCAGTTCTGCCGTCTACGTGCTATTACCTGTTTGTTAATAAATCAAAAAGTACTTCTAACATTACAGTAATGGCCCTACAGCTAGAAAAATAAATCGAAAGCAATGCTACAATTATGTTAGCTGTTTTTAGCAACTACATTTTGTATGTGAAATTGTGAATGCACAAACTGATGGACGCATGCACTTGGATATTATATAATTGGAATCTTGGTGATGAATTTTTACTTGCTTTTTTAGTTCATTGGTATGATTAGTCGTGTTTTTCTAACCTAATCTATCCATAATGTCAATTATACACGGCCATATATGATTGTGAATTTGGAGTTCTAATCAGATGATTGGTGATTCTTGACTTACCATTGTCAGTTATACAGTGTCCTTTTTCGCTCATGAAACCTAAAAAGAAACTACTGATCATGTTTATTCACAGATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAGGTTACTAAAGGAATTCCCTAAAAATATGCTTTAGTTTCAGAAGAATTGAATCATGAAAATTCTTTCCTTTTGTGTAAATTTACAAGTGTATTGATATGCAATTTGCATCCTTTATCTCTTACCCCAATTTTGCGTTACTTAAAACCATTTTTCGGTTGTAACCTTTAAACAACCTTTTGTCTTCCAAATAAGCTTAAAGACAAAAAAGAACTATCTAGTTTGAGAGGGCACATAATTACTGTTAGATTTGAAGGAATCGGTCATGATGCAACTTGCGTAGTAAGCATAATGTTGGATCAATATATGTTATGTGATTATAATGTGTGTCTGGAATGGACGTTTATATGATACAATTTCAACTGTGTGACAGTAAATAAGATAGTAGGTTGCTTGTGAAGGAGAACAAGGACGGTGGCCCACACATCCATGTTCTATATACATGTTAGAATACTCTGATGAATTATAAATGAAATAAACTCAGTTTGCTATTACAGGGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAAGTGAGTTGTTTGATCTTGATGCTAGGGTCCATCTTATTCTATCTATGTTTATTATGTGCTTATTATTTGAAAGCAGCATCACTTCTTTATTATATTTGTGATGTATATGCACCTTCGTATCATTCTGATTTATAGTTAGTTTTTCTATCTTTTTCGCATTGCTGATAAGCAGGATAGGAAAAGTAGAAGATTTTAACTAATTAGTGCACCAATGGGGTGCCGGTAATATTAATTTCTTCCATTCTCTCTTTCACTGTATTTAGAACTGGAAGGTTGACCTCTCAGATTTTCAGTAAGCCAGAGAAGTGCTCCTCTTTTTAAATAGTATCTTGTTAGATGATTCAGTAACGATTATGCACTTTCTCGTAGAAGTGTACCGAACTTTATCCAGTGGTTTACCAACTGAAGGCATGCTTTACTTCAGTAGTTGGTTTAATAGATTTCCAACTGTTTAATCAGACTTGTGCAGAAAATAGCTGTTTTGATCATACTTGCTAGCAAAGATATTTTTGCTATTGGTTGTATTAGCCTCCTGATGTCCATTCCAGCAGTGTCATTTTATAGCCCATGTCAGCCCCTATTGTGAGTTAAGTGGTCATGTTTTACTTAAGTAATTTGGTAAAGGGATTTCCAACTGTTTAATAAGACTTTAAAAAGCTAAGCTTCTTATGCTATTAGTTGTATTAGACTACCTGATACCCCATTCCAGCAGTATTATTCTATAAACTAGTATGCTAATACCTGATGATGGTAGCTATAATCCTTGTCCTGTTTTCTTGTCTCATCCGTTAAGTGGGGTAAATATAGTGCTTAGTCTTATTAACATTGTGAGACAGGGATATGTTGGTGTTGCAACAACTTACTTTTATTACATTCTGAGACAGGGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGAGTGAGTTTCAGCTTTTACCGAAGATGAGACTGTTTTATCATGCTTTGTTTCTTATGAATGTCCATTGGTGACATAGGTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTGGTAAGTTACTGTATCTCAGTAATATTTTTTACATAGAGGTAAATTTGGTCAACTTGGTCCACAACGTTTGATGCTTGATGCTCAGGAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAGGTACTTGATGGATTTATTTTCAGCTTTATCCTGAACTCGTACAACTTTAAAATCAGTTTTAGGGATGCAAAGACAGATACAAATGGAACTGATGCGCACAGGGTTTATTTCCCATATTTTCCTTTCATTTGTCTATCTTTTTTTCTTTTTTCTTTTGGTTGGTGGGACAGGGTAGGGGCTGCAAAAAACTGTATCAAATTAGATTCAGCTTCATAAGCTTAGGTTGGTCAAGTTGCTGCATGTTCATGGGTGATATGGGATCATTGTATGTCTTTCCAGAATTGCAGGAACGATCTGTACAGTCTGCATTAATTTCTTCCTCGACACCTTTTATATTAATTTCTAGTTGTAAGACTAAACCTAGGTATAGCATCTTAAATTGTGTGACTTATCCTCAACCCTGTTACAATTCTAGTTTCATCTGGCCTGAGCAAAATGAGGCTTCTTTAGAGTTCGTTATGCTTCAGTTACATCGAGTAGCAGAGTTAGAAGTTTATGTGTAATTTGCTTTTAGGCAGCTTATCATATAAAGGGGAAATATTCTGCACTCTCTTGTGTTTGAATGATGGAGACTTGTCCTTAGTTTGAACTTCTATATTCCAAATCTTATACAACAACATCTATGCCTTAGTCCCAAATAAGTTGGGGTCATCTATATGAATCCTCACTGAGTCAGCGTGTTCCTCATTTAAATTCTAGAACTTGTAGGAAAAGGAAAGTAGAAAACATTGATGGACCTAGCTATGAGAATATTGTAAATTGGTTGAATCAAAGCTTTTGCTTTTATTGGGTTTCATTTGTGGAGAACCATATTTTGGTGTAAGTTGTGTGTTTTTTGGTATACGGCTTGTTATAAGAGGATCTCCCCATCATTAATAACATTGTTCACCTTATAAAAAGAATTCAAGTTACTGCTTTTATACTCATCATGTAGATGTTCATGCAAGTAAAAAACAGTAATACATGTACATGTTTTAGGTCTCCTGTTAGACCACCAGGAGTTTCAGTTTCTGGACATTTTAATGTGCACAATAATATATGTGTGCTGAAGCCCCGCAGCGTGGGTAATCCATCACCATCTTAGCATATTATTGGAACTCTTAACAAGCTTCCTATTACTTTGTTTTCACAGGATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAA</genome_strand>
        <mrna_strand>TGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA............................................................................GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG.....................................................................................GAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689980" ref_strand="+" ref_description="SGN-E689980 [LH_Ea02F02]">
      <seq>accgtctaatgcccaattctgcacgaaggaactgcgattactgctcccaaggctaattggcaatgatctccggcgatttccttctagtccggttccaataaattctacaatctgaccaccatccgcttctacgccggaaaccggaactccggcagaatcacatgcaacttgaaagttaccggtagcagcaactatcatgcggaaacaactaccggaatccagctatatatagatattgagagattacttacatagacagagaaacaatctctagattggggaagttcacaagactgggatgaaatcgagggagcatgggtattgcagcctgaaacatcaaagccgaagttagtcatacattttattggaggtgtttttgttggggctgctccgcagctttcttaccgcctgttccttgagcggctcagacagaaggatgtcttggggattgctacaccttatgatagaggatttgaccatttctaccttgcacatgaagtgcagtttaagtttgatacgtgccttaaatttctccgagaaagagtacaaaaccttcctgtatatggcattgggaactctttaggatctgtaattcaccttttgattggagctagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75740" stop="71403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75444" g_stop="75225" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="242" r_length="220" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695">
            <donor d_prob="0.952" d_score="0.90"/>
            <acceptor a_prob="0.964" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73529" g_stop="73463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="309" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494">
            <donor d_prob="0.682" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72968" g_stop="72844" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="434" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71959" g_stop="71851" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="543" r_length="109" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76">
            <donor d_prob="0.536" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71774" g_stop="71711" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="607" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71625" g_stop="71615" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="618" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E689980" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75444" e_stop="75225"/>
          <exon e_start="73529" e_stop="73463"/>
          <exon e_start="72968" e_stop="72844"/>
          <exon e_start="71959" e_stop="71851"/>
          <exon e_start="71774" e_stop="71711"/>
          <exon e_start="71625" e_stop="71615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATGAACTGCG-TCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAGGTCTGTTGCCCTAATCGCTCGATTACTTACTAGTCAATACTTGTAGTAATTTCTGGCGGAACTTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTTAAAATATCCTATTGTTTTGAAATAAGATCTAAATATTATTTTATTATTTTGTTAATCATTATCTTCATCAAATACGTGTCGCCTCCCACCAACGTGTATTAGGTAACTGTTCCACCAAAGCTAGGACATGTGGGAGAGGAAGTTACCTAGTGTTTTTTTTCTTCGTTGGAGTTTGAACCTGAGACCTCATGATTCTTATCCGCTTCATTGATAGCTAGTCCACACCCTTGAGTGCATAAGATCTACATATTTAGAAACAACTGAAAGAGTAGTTGACTAAAAGTTAACAATTAAAAGTATACAAAAAAAAATTGTGGTGAAAGGTGGAAAGCGGCAGTATTTGTAGCTAAATGGAATGAGTTGCTATACCAAAAGACTGCTATAACAATTACAAACTTCAAGTTGGATAAAAAAGAATGTCGATAAATATGGTTTGCGACATATTTTTCCTCTTCCATCCCTCTGTCCTTAATAAGCAACACAAATACATTATAATTGAGCTGTGCAAAGTGAGCTCGACGGCTTAAAGATTAGCCATAGTTTCCTCCTTGTGCCTAAGGCAATTGCGCAATAGGACAGTATTGGCACAAAAACCAGGACAACCCCCATAAATTGCCTTTTTGAAGGAAGAATAACTGTTGGAGGTAAGTATCAGAACAAGAAAGAAGACAAAAAAAGGAATCGTTTATCATGTGCGCACCTTTAGCGGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAGGAATCGTCGCACATGCCGAAGTTGGCATTTCAAGGAAAGGTGACATTATGAATATAATCTCACTCTTAATGAACCTTATGTCTTGTACACGTTGACTTGCCATCAAGGCTCTTAACCCTTTTTATGGATCAGTTCTGCCGTCTACGTGCTATTACCTGTTTGTTAATAAATCAAAAAGTACTTCTAACATTACAGTAATGGCCCTACAGCTAGAAAAATAAATCGAAAGCAATGCTACAATTATGTTAGCTGTTTTTAGCAACTACATTTTGTATGTGAAATTGTGAATGCACAAACTGATGGACGCATGCACTTGGATATTATATAATTGGAATCTTGGTGATGAATTTTTACTTGCTTTTTTAGTTCATTGGTATGATTAGTCGTGTTTTTCTAACCTAATCTATCCATAATGTCAATTATACACGGCCATATATGATTGTGAATTTGGAGTTCTAATCAGATGATTGGTGATTCTTGACTTACCATTGTCAGTTATACAGTGTCCTTTTTCGCTCATGAAACCTAAAAAGAAACTACTGATCATGTTTATTCACAGATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAGGTTACTAAAGGAATTCCCTAAAAATATGCTTTAGTTTCAGAAGAATTGAATCATGAAAATTCTTTCCTTTTGTGTAAATTTACAAGTGTATTGATATGCAATTTGCATCCTTTATCTCTTACCCCAATTTTGCGTTACTTAAAACCATTTTTCGGTTGTAACCTTTAAACAACCTTTTGTCTTCCAAATAAGCTTAAAGACAAAAAAGAACTATCTAGTTTGAGAGGGCACATAATTACTGTTAGATTTGAAGGAATCGGTCATGATGCAACTTGCGTAGTAAGCATAATGTTGGATCAATATATGTTATGTGATTATAATGTGTGTCTGGAATGGACGTTTATATGATACAATTTCAACTGTGTGACAGTAAATAAGATAGTAGGTTGCTTGTGAAGGAGAACAAGGACGGTGGCCCACACATCCATGTTCTATATACATGTTAGAATACTCTGATGAATTATAAATGAAATAAACTCAGTTTGCTATTACAGGGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAAGTGAGTTGTTTGATCTTGATGCTAGGGTCCATCTTATTCTATCTATGTTTATTATGTGCTTATTATTTGAAAGCAGCATCACTTCTTTATTATATTTGTGATGTATATGCACCTTCGTATCATTCTGATTTATAGTTAGTTTTTCTATCTTTTTCGCATTGCTGATAAGCAGGATAGGAAAAGTAGAAGATTTTAACTAATTAGTGCACCAATGGGGTGCCGGTAATATTAATTTCTTCCATTCTCTCTTTCACTGTATTTAGAACTGGAAGGTTGACCTCTCAGATTTTCAGTAAGCCAGAGAAGTGCTCCTCTTTTTAAATAGTATCTTGTTAGATGATTCAGTAACGATTATGCACTTTCTCGTAGAAGTGTACCGAACTTTATCCAGTGGTTTACCAACTGAAGGCATGCTTTACTTCAGTAGTTGGTTTAATAGATTTCCAACTGTTTAATCAGACTTGTGCAGAAAATAGCTGTTTTGATCATACTTGCTAGCAAAGATATTTTTGCTATTGGTTGTATTAGCCTCCTGATGTCCATTCCAGCAGTGTCATTTTATAGCCCATGTCAGCCCCTATTGTGAGTTAAGTGGTCATGTTTTACTTAAGTAATTTGGTAAAGGGATTTCCAACTGTTTAATAAGACTTTAAAAAGCTAAGCTTCTTATGCTATTAGTTGTATTAGACTACCTGATACCCCATTCCAGCAGTATTATTCTATAAACTAGTATGCTAATACCTGATGATGGTAGCTATAATCCTTGTCCTGTTTTCTTGTCTCATCCGTTAAGTGGGGTAAATATAGTGCTTAGTCTTATTAACATTGTGAGACAGGGATATGTTGGTGTTGCAACAACTTACTTTTATTACATTCTGAGACAGGGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGAGTGAGTTTCAGCTTTTACCGAAGATGAGACTGTTTTATCATGCTTTGTTTCTTATGAATGTCCATTGGTGACATAGGTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTGGTAAGTTACTGTATCTCAGTAATATTTTTTACATAGAGGTAAATTTGGTCAACTTGGTCCACAACGTTTGATGCTTGATGCTCAGGAGCTAGATAT</genome_strand>
        <mrna_strand>ACG-AAGGAACTGCGATTACTGCTCCCAAGGCTAATTGGCAATGATCTCCGGCGATTTCCTTCTAGTCCGGTTCCAATAAATTCTACAATCTGACCACCATCCGCTTCTACGCCGGAAACCGGAACTCCGGCAGAATCACATGCAACTTGAAAGTTACCGGTAGCAGCAACTATCATGCGGAAACAACTACCGGAATCCAGCTATATATAGATATTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTACATAGACAGAGAAACAATCTCTAGATTGGGGAAGTTCACAAGACTGGGATGAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATGGGTATTGCAGCCTGAAACATCAAAGCCGAAGTTAGTCATACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTCTTGGGGATTGCTACACCTTATGATAGAGGATTTGACCATTTCTACCTTGCACATGAAGTGCAGTTTAAGTTTGATACGTGCCTTAAATTTCTCCGAGAAAGA............................................................................GTACAAAACCTTCCTGTATATGGCATTGGGAACTCTTTAGGATCTGTAATTCACCTTTTGATTG.....................................................................................GAGCTAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279128" ref_strand="-" ref_description="SGN-E279128 [cLEL-4-D21](-)">
      <seq>gcacgaggaactgcgtcactgctcccaaggcgaattggcgatgttcgccggcgatttcgttctactccgattccactaaactctacaatcggagcagcatccgcttctacgccggaaaccggaactccagcagaatcagatgcaacttgaaagctaccggcagcagcaacaatcagccggaaacaagtaccggaatccagctatatagagatattgagagattacttacagagacagtgaagcaatctcaagattggggaagttcacaggactgggatgaaatcgagggagcatgggtattgcaaccaaaaacatcaaagccgaagttagtcgtacattttattggaggtgtttttgttggggctgctccgcagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="75741" stop="72577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75444" g_stop="75225" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73529" g_stop="73463" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="287" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72968" g_stop="72877" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="379" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E279128" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279128" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75444" e_stop="75225"/>
          <exon e_start="73529" e_stop="73463"/>
          <exon e_start="72968" e_stop="72877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAGGTCTGTTGCCCTAATCGCTCGATTACTTACTAGTCAATACTTGTAGTAATTTCTGGCGGAACTTTAGATTTTCCTGATTTTGTGAAATTAAGTGGTTTGATTGAATATGCTGCCTTTTATTTTTCTGTGTCTGCTTGGTGTAACTTGTCTTCTATCGAGCAAAATTAACATGTTCAATTTCCGGCATGACAAAAGCGGCGATATCTTTTCATTTGTTCTAGTCTTAGCTAACAGAGTTACCCATATTATTGGTAGGAGGTAGTAAATATTGAGTGGAATTAGTCAAGTGCGTTATAATAAAAAAGATTTAGCATGGAAAGTACTCTCTCTGTTCCACTTTATGTGGCATAATTCAGAGATCTGAAATATTTTAATTTTTGGTGTGTAATTAACTTAAAATATCCTATTGTTTTGAAATAAGATCTAAATATTATTTTATTATTTTGTTAATCATTATCTTCATCAAATACGTGTCGCCTCCCACCAACGTGTATTAGGTAACTGTTCCACCAAAGCTAGGACATGTGGGAGAGGAAGTTACCTAGTGTTTTTTTTCTTCGTTGGAGTTTGAACCTGAGACCTCATGATTCTTATCCGCTTCATTGATAGCTAGTCCACACCCTTGAGTGCATAAGATCTACATATTTAGAAACAACTGAAAGAGTAGTTGACTAAAAGTTAACAATTAAAAGTATACAAAAAAAAATTGTGGTGAAAGGTGGAAAGCGGCAGTATTTGTAGCTAAATGGAATGAGTTGCTATACCAAAAGACTGCTATAACAATTACAAACTTCAAGTTGGATAAAAAAGAATGTCGATAAATATGGTTTGCGACATATTTTTCCTCTTCCATCCCTCTGTCCTTAATAAGCAACACAAATACATTATAATTGAGCTGTGCAAAGTGAGCTCGACGGCTTAAAGATTAGCCATAGTTTCCTCCTTGTGCCTAAGGCAATTGCGCAATAGGACAGTATTGGCACAAAAACCAGGACAACCCCCATAAATTGCCTTTTTGAAGGAAGAATAACTGTTGGAGGTAAGTATCAGAACAAGAAAGAAGACAAAAAAAGGAATCGTTTATCATGTGCGCACCTTTAGCGGCTGCGGGTTTCCCTTGTCATTAAAAAAAAAAGGAATCGTCGCACATGCCGAAGTTGGCATTTCAAGGAAAGGTGACATTATGAATATAATCTCACTCTTAATGAACCTTATGTCTTGTACACGTTGACTTGCCATCAAGGCTCTTAACCCTTTTTATGGATCAGTTCTGCCGTCTACGTGCTATTACCTGTTTGTTAATAAATCAAAAAGTACTTCTAACATTACAGTAATGGCCCTACAGCTAGAAAAATAAATCGAAAGCAATGCTACAATTATGTTAGCTGTTTTTAGCAACTACATTTTGTATGTGAAATTGTGAATGCACAAACTGATGGACGCATGCACTTGGATATTATATAATTGGAATCTTGGTGATGAATTTTTACTTGCTTTTTTAGTTCATTGGTATGATTAGTCGTGTTTTTCTAACCTAATCTATCCATAATGTCAATTATACACGGCCATATATGATTGTGAATTTGGAGTTCTAATCAGATGATTGGTGATTCTTGACTTACCATTGTCAGTTATACAGTGTCCTTTTTCGCTCATGAAACCTAAAAAGAAACTACTGATCATGTTTATTCACAGATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAGGTTACTAAAGGAATTCCCTAAAAATATGCTTTAGTTTCAGAAGAATTGAATCATGAAAATTCTTTCCTTTTGTGTAAATTTACAAGTGTATTGATATGCAATTTGCATCCTTTATCTCTTACCCCAATTTTGCGTTACTTAAAACCATTTTTCGGTTGTAACCTTTAAACAACCTTTTGTCTTCCAAATAAGCTTAAAGACAAAAAAGAACTATCTAGTTTGAGAGGGCACATAATTACTGTTAGATTTGAAGGAATCGGTCATGATGCAACTTGCGTAGTAAGCATAATGTTGGATCAATATATGTTATGTGATTATAATGTGTGTCTGGAATGGACGTTTATATGATACAATTTCAACTGTGTGACAGTAAATAAGATAGTAGGTTGCTTGTGAAGGAGAACAAGGACGGTGGCCCACACATCCATGTTCTATATACATGTTAGAATACTCTGATGAATTATAAATGAAATAAACTCAGTTTGCTATTACAGGGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTC</genome_strand>
        <mrna_strand>GCACGAGGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350444" ref_strand="+" ref_description="SGN-E350444 [cTOS-5-F14]">
      <seq>gaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactatatagaagtggctaaaagcagatgctctctccgtttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="77114" stop="76146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76909" g_stop="76900" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76807" g_stop="76447" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="371" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="383"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E350444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76909" e_stop="76900"/>
          <exon e_start="76807" e_stop="76447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTC</genome_strand>
        <mrna_strand>GAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356500" ref_strand="+" ref_description="SGN-E356500 [cTOS-21-A13]">
      <seq>gaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactatatagaagtggctaaaagcagatgctctctccgtttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="77114" stop="76146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76909" g_stop="76900" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76807" g_stop="76447" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="371" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="383"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E356500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76909" e_stop="76900"/>
          <exon e_start="76807" e_stop="76447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTC</genome_strand>
        <mrna_strand>GAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217257" ref_strand="+" ref_description="SGN-E217257 [cLEL-21-M23](-)">
      <seq>gtattcgtgctcagggtgattccaaacttgtttgtatgcagatccagggtctatggaaagttaaaaatcaaaacatctttacgctatttcagcaggcaaaacaactaaaggataggtttttttctttccgcatcattcatgttcttcgggaatctaactgtgacgcggatcagcaggcgaacttggctattgaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactatatagaagtggctaaaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="78632" stop="76162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78332" g_stop="78292" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77357" g_stop="77250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="149" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76951" g_stop="76900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="201" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76807" g_stop="76463" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="546" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="561"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E217257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78332" e_stop="78292"/>
          <exon e_start="77357" e_stop="77250"/>
          <exon e_start="76951" e_stop="76900"/>
          <exon e_start="76807" e_stop="76463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAGGTTCGTTTTCCCATATTATTTGTTTGTTCTTTTGTTTTCTTTATATTTCTTGATATCACACTTCTCCTTTATGTGTCTGCACAATAAAAGTTGTACCTGGAGTTGTGTACTTCTAGCAAAGTTTTACTTGTTTTCAACTTCAGCTAGATGAATAGGATCGTTATTTGCATATTTTTTAAGGTCAAGGAGGTCTGACAATCTTTTTTTAGTCGTGAACCCATTTCACAAGTCCCTTCGACGTATTTTCTTTGTTCTATAGGATAAAACTTTTTTGTAATGTACATGCCCTTTCTAGTATAAGGTAGTAACAACTAAACATCAAAATTTGTTTTAAAAGGTAACAATCTTATTATCTTTATATTTACATATCACAAGAGCAAAGTATATCCTCATTCTTTCAAGGAATCTATTGTCTCTAACAGTGGATCCAGATCATCGGGAATTCTTCTTTACACCAAAAACGAAGTGAAATTTTTCTTGATTTTATGAATAGGGCTGTTTTTTAGGAGTAAGCATTAATATGCAATCCACCTAAAGTTTCTCGGCTCAAAGAGAGTGAGTTTGGTAAGTTTAATAATGGGTAAATCATATAACTGAGCTCGTCAAAGAGTCTCTATCTTTTCCTTCTCTTGGGTAAATTTCGAGAAGGAAAAGTTAGAGGGCAGCAAATAGTTCTTGTCCGTGTCTTATTTTCTTGGTTGGAAATATAATCAGAATACATTTGGTCTCTCAATGAAATCAGTAGTGTCTTTGACGAGCTTAGTTATAACTCCGAGATGCTTTATCATAGCTTCTGAAGTCGGTCTCACTAGTCACGACATTACTTAACTTTTCAAAGAAATTGGTCTCATGTCAAGTTGTTTGAGCTTATTTTATGTTTTCTTATTTTCTTTATCTGATTGATTTGATTCATTAAATGTATCCTTCCAAACAGATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAG</genome_strand>
        <mrna_strand>GTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTTTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254437" ref_strand="-" ref_description="SGN-E254437 [cLEG-27-N15]">
      <seq>atttcagcaggcaaaacaactaaaggataggtttttttctttccgcatcattcatgttcttcgggaatctaactgtgacgcggatcagcaggcgaacttggctattgaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactatatagaagtggctaaaagcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="77613" stop="76162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77313" g_stop="77250" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76951" g_stop="76900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="116" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76807" g_stop="76463" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="461" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="485"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E254437" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254437" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77313" e_stop="77250"/>
          <exon e_start="76951" e_stop="76900"/>
          <exon e_start="76807" e_stop="76463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAG</genome_strand>
        <mrna_strand>ATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217541" ref_strand="+" ref_description="SGN-E217541 [cLEL-21-M23](-)">
      <seq>gataggtttttttctttccgcatcattcatgttcttcgggaatctaactgtgacgccggatcagcaggcgaacttggctattgaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacganctctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgaagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactatatagaagtggctaaaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="77588" stop="76162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77288" g_stop="77250" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76951" g_stop="76900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="92" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76807" g_stop="76463" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="439" r_length="347" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="454"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E217541" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77288" e_stop="77250"/>
          <exon e_start="76951" e_stop="76900"/>
          <exon e_start="76807" e_stop="76463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACG-CGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGA-CTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCG-AGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAG</genome_strand>
        <mrna_strand>GATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTGACGCCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGANCTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237202" ref_strand="+" ref_description="SGN-E237202 [cLEL-7-M12](-)">
      <seq>aaaacaactaaaggataggtttttttctttccgcatcattcatgttcttcgggaatctaactgtaacgcggatcagcaggcgaacttggctattgaacttccagatggtcatgtccaggaggagatagagaaatgccaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="77601" stop="76177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77301" g_stop="77250" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76951" g_stop="76900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="104" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76807" g_stop="76485" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="427" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="449"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E237202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77301" e_stop="77250"/>
          <exon e_start="76951" e_stop="76900"/>
          <exon e_start="76807" e_stop="76485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACT</genome_strand>
        <mrna_strand>AAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTAACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGCCAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237015" ref_strand="+" ref_description="SGN-E237015 [cLEL-7-M24](-)">
      <seq>taggtttttttctttccgcatcattcatgttcttcgggaatctaactgtgacgcggatcagcaggcgaacttggctattgaacttccagatggtcatgtccaggaggagatagagaaatgacaaacggggctgtagacgacgactctaaacgtggtgctaacgaagatctcatcgtgctaaccaccgagcatcgcgttttgcctgtaagtcagtggatagcacaatatgtttttacctgaaactcgaagaccgatgagggaactgattgatgcgaatcgtatcgagctatgatacggtaatttatttaacttgtactattagtatcgcaatatgcgtgtaataacgaatttcatgcatcttttgacagattgtaataattttaagtacaatgagtattagtactttactactaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="77586" stop="76177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77286" g_stop="77250" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76951" g_stop="76900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="89" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76807" g_stop="76485" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="412" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="434"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E237015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77286" e_stop="77250"/>
          <exon e_start="76951" e_stop="76900"/>
          <exon e_start="76807" e_stop="76485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAGGTTAGAGCTTAGTTTTTGTTCCAGTCTTGGTTGGGGTTTGGTTATATTTGAGTTTTCATCAATGTTATATCCAACTTCATCTCTTACTGCAGATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACT</genome_strand>
        <mrna_strand>TAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG............................................................................................ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704208" ref_strand="+" ref_description="SGN-E704208 [FA23CF02]">
      <seq>tggtttctttgttgttaagaaaggagatattgttggagtctacagaaacttgggtgactgccagactcaagtcggatcctcgatatgtgatcctccggttagtgtgtataaaggctactccatgccaaaggacacggaggaatatcttctatcttgtggacttaaaaatgcattatattctatcagagctgcagatctgactgaaagtctctttggggctctagtaccatgcccttttcagcatcaatcttcttccaaaggtggagcgtctgagcatacgccgaagaagaggtctcaggaagcaatgtggtcagaatatgcggatgctgttggatcagctgttgcttcaaatgattccctaagaaagcatatcaagttagaacctcctaagggtgaccagcaagctctatcatccggtgtttatgctgttggaatgaaggaagctgatcgtggttatcctcagcagcggtcttgtactcttgaatttgatggtacttcaaaaggaaacccaggacaagctggtgcaggagctgtagtacgagctgacgatggaagtttgatctgtaggctgcgtgaaggtttaggaatagcaacaaccagtgttgctgaatatcgaggctttatcttgggtttgaaatatgcacatagcaaagggtttacaagtattcgtgctcagggtgattccaaacttgtttgtatgcagatccagggtctatggaaagttaaaaatcaaaacatctctacgctatttcagcaggcaaaacaactaaaggataggtttttttctttccgcatcattcatgttcttcgggaatctaactgtgacgcggatcagcaggcgaacttggctattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="82970" stop="76607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82670" g_stop="82589" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82588" i_stop="81925" i_length="664">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81924" g_stop="81766" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="241" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80863" g_stop="80783" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="322" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78904" g_stop="78809" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="418" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78655" g_stop="78515" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="559" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78435" g_stop="78292" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="703" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77357" g_stop="77250" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="811" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76951" g_stop="76907" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="856" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E704208" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82670" e_stop="82589"/>
          <exon e_start="81924" e_stop="81766"/>
          <exon e_start="80863" e_stop="80783"/>
          <exon e_start="78904" e_stop="78809"/>
          <exon e_start="78655" e_stop="78515"/>
          <exon e_start="78435" e_stop="78292"/>
          <exon e_start="77357" e_stop="77250"/>
          <exon e_start="76951" e_stop="76907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCGGTAACTATTGGAGGAATTTATATCTGCATTTTTATTATATAATGTGTGTATGTACACATATATATGTCTATATGTATACAAAGCTAGATATATGTATGTATGTCTGTGGATTTATATGGTGTCAACTGTGACTTTTCTCACTTTTCCCCTTGGTGGCTTGAACTCCCAATCTATTAGTTGGCACTGGAGTGCTCTTGCCACTGGATAAACTTCACTTGTCAACTTGTAGTTAATATACATATAGCGGATGCTACACCACATTTATCTTATCTGTTCTTTTCCTCGTGAATTTATGCAGATATAGTTGCACTGCAAGAACTTCATAAAATAAGTTTGACCTTATTTATTTGCTACATCTTCATTTACATAGGTCGACAGGAAGCTGGTGCATAATTTATCTGCAGATTTCAGCATTTCCTTGATGCTTTCCTTGTATGAATAAAATTATTTTTCAAAAGGAATAACATTTATTACAGCTTCAACTTGGTTTTCTTAATCAATGATAAAGTTATAGAAGTGTAGGAATTTCTCTTACAGAATAGGGGTGGTAAAGGCAGTTCCGTTATCTGTGTCCATCAATGGTTATATACCAATGTGCATGAAATGGGAAATATATCAAACTTGCAGTGCTTTAATCGGTTCCCCCTGCCCCTTTCTTTGACAGATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCGGTAAGTTGGGGCTATATTAGCTTTTTGTGTAAGTCGGTCAGCGTTTATAGCAGTTGCTTTTGATGTATATCTCGTTTCTTGTTCTACAGAGAGAGCTAACTTAATGTGCCTATAGTTTTTGGTTATCTTACAAAGTACATTCTTCTATTTGCACCTCTCTGGATATGGAAGCAGGATTATAACAGTAGGGGCTTGTTTGCTTAATTTTCCTTAAGATGCCATAGTAAATGGTCTCACAACTTACATGAGAAAGCTAGTTATTCAGCTGGAAGGCAATTTTCTTTCCTAAAGTAGATCTACTTGGAATTTGAAGACTGGATACTAATCCATTGTGAGCAAAATGTCCGTATTTTTCTATTATGTCTGGGTAACCCTTTTTGAAGAAATGATTATGTAAGGAGGTTGAAAAGTCTCCAATACGGTACCTGTTAATGAGCTAAATCTGTTTAAACGGAATACTAGTAGCTTGTTAATAGGTTTCTACAGCTGTTTTTAGAAATATCTCGATATAGCAGTAGCAGTACTTGTCGTTGACAAGTCTCCGCAGCTATTGTAGTTGTGTATAAATAAAACTAAAACTAAAAATAGGTCAGAGTGGGCCATTAATAAGAACAGTAATGAGTAGATTGTCTGGCTACATACAAAGTATTGAAAATAGAAGTGTATTTCAATAAAATAAAAATAGGTCATGCTGGGTGGCTTATAAGAAAAGTAGCTTGCCAGCAAGTTCTTGCAACTGTTGTTATCTTTGCTTTTTATTATTTCTTAGTAAAAACTCATGTAAGGTATTGAACTTTATTAGATTGAACGTCATAACAAAGGATATGTAGTTCTGTGAATCATTTCAAGGAGCCACATCCTAGTAAATGTAGCTAGAGATCTGAAAATACTATTTCTAGTAAAAGGTGTCTTTCCGTGTTACAGATTGCCATAATTCTTCTGATAAAGAAGATTCCAGTAAGTTATTGTGATGAAAAACATTTATAATGTGGAAGGAACAGCAAAAAACAGTATCAGTATCATCCTTCCTGTTTAGAATTTTTTTCCTCTCATTTGTCATCTAGTTTATTACATGTGACGTGTGTATCAAGTATTTTATTAGATGACGGGATGATCCCAGCTTACCACGTCGATGTGTTGATAAAGCAAAAAGAATGGTGGAAATGGAAAAAGAATTAATGTTTCTGACTGAAATTTCCCCTAATTGACTAACAAATTCAAGGGCACTCTCAAATATGGATAAAAAGTTCCCTATTACTATTCTGGTGTTGGTAATAAATATAATTAAGAGCTATAATCTTCAACTTCTGCGACTGCGGACTAGGCTTAATAACAAGATGGGAAACCTTTTTTCCCAAACCGTTGCATGGGATGACTTTTCGGGAGTGCTGAGTAGTTTAAATGAACCAGATGGATAACCTTCGTCTTCTCTTTGATGGAGCTGACGTCTGGATATTTTGCTGAGCAATTACTGTGCTTACCTTAGCTCTGATGAAAGACTTCCTGTTTTCTGCAAAGTTTGCATTGAGCATTAAAGGGGAACTAATACTACCTTTTGGTTGATCAAAGACATATTTAGGTTACTTAAGTGTTACCATTTTATGAGTTCTGACATCTTTTTGTGCGCAAAGTATGTAAAGTTGCGATTGTCAAACCATATTCTTTGCAATATTTTGTTGCTGTACTGTATTCTTCTACCTGGCTCTTGGAGAGGTATATAATGTTAATTTTGGCTCAAAGTAGTACTGAATACTTACACTTAAGAAAGAAATACTAGTTACAAAATGATATACTAGTTTCTTGTGTCCACACCTATACGATCTGTTTGGCTTGCCACACTTTGGAATCTATCTTGTTCATTGGCATGTTTATTTGCAGGATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGTGTGAGTGGCTGTTAAAATGATGGCTTCTTATGAAAAAACATAAATGATTTCAGTATATATGATTAAAAAATAAATTGTCTTTATACTTAATGGGAAGTCGGCGAAGCTAATCAATCTTAATATCAAGTTGAGTTCTTTTAAATTCTCTTGAAGGTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAGGTTCGTTTTCCCATATTATTTGTTTGTTCTTTTGTTTTCTTTATATTTCTTGATATCACACTTCTCCTTTATGTGTCTGCACAATAAAAGTTGTACCTGGAGTTGTGTACTTCTAGCAAAGTTTTACTTGTTTTCAACTTCAGCTAGATGAATAGGATCGTTATTTGCATATTTTTTAAGGTCAAGGAGGTCTGACAATCTTTTTTTAGTCGTGAACCCATTTCACAAGTCCCTTCGACGTATTTTCTTTGTTCTATAGGATAAAACTTTTTTGTAATGTACATGCCCTTTCTAGTATAAGGTAGTAACAACTAAACATCAAAATTTGTTTTAAAAGGTAACAATCTTATTATCTTTATATTTACATATCACAAGAGCAAAGTATATCCTCATTCTTTCAAGGAATCTATTGTCTCTAACAGTGGATCCAGATCATCGGGAATTCTTCTTTACACCAAAAACGAAGTGAAATTTTTCTTGATTTTATGAATAGGGCTGTTTTTTAGGAGTAAGCATTAATATGCAATCCACCTAAAGTTTCTCGGCTCAAAGAGAGTGAGTTTGGTAAGTTTAATAATGGGTAAATCATATAACTGAGCTCGTCAAAGAGTCTCTATCTTTTCCTTCTCTTGGGTAAATTTCGAGAAGGAAAAGTTAGAGGGCAGCAAATAGTTCTTGTCCGTGTCTTATTTTCTTGGTTGGAAATATAATCAGAATACATTTGGTCTCTCAATGAAATCAGTAGTGTCTTTGACGAGCTTAGTTATAACTCCGAGATGCTTTATCATAGCTTCTGAAGTCGGTCTCACTAGTCACGACATTACTTAACTTTTCAAAGAAATTGGTCTCATGTCAAGTTGTTTGAGCTTATTTTATGTTTTCTTATTTTCTTTATCTGATTGATTTGATTCATTAAATGTATCCTTCCAAACAGATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAATCTCCTCTACACCTAGACTCTTGATTCATATTCTCGTCTCACTTTATTAATCAGAATTAGTAGGTGTTTGGACATGCTATTTAGGATCATGATTTCAAATCAGCATTTAGACATGCAGTTTAGAATCATGATTCCAAATCATGTCCAAACGGGGCCTCTGGTCTGTAATAGCACCAAAACTGAATAGAATTAGAGCCCTCGTTATGGTTTTCTCAGTTACCTTGTTCTTAGTTCTTACCTTGCTGATTTTCGGAGATTAAACATTTCTTAACTCTCGTTTTCATAGGAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAA</genome_strand>
        <mrna_strand>TGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTCTACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAGCTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGT.........................................................................................................................................................GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG...............................................................................ATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG..........................................................................................................................................................................................................................................................................................................GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253270" ref_strand="+" ref_description="SGN-E253270 [cLEG-26-C20]">
      <seq>gaagctgatcttggttatcctcaacatcggtcttgtactctggaatttgatgggacttcaaaaggaaacccaggacaagctggtgcatgagctgtagtacgagctgacgatggaagtttggtaatgattactgttttgggtttgtatttccttttccttgttcgttgctgtacttatattacaactttgcgattaatagatctgtgggctgcgtgaaggtttacgaataacaacaaccactgttgatgaatatcgaggctttatcttgggtttgaaatatgcacatagcaaagggtttacaagtattcgtgctcagggtgattccaaacttgtttgtatgcagatccagggtctatggaaagttaaaaatcaaaacatctctacgctatttcagcaggcgaaacaactaaaggataggtttttttctttccgcatcattcatgttctttcggtaattaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="78934" stop="76938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78634" g_stop="78292" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77357" g_stop="77238" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="463" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E253270" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78634" e_stop="78292"/>
          <exon e_start="77357" e_stop="77238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAGGTTCGTTTTCCCATATTATTTGTTTGTTCTTTTGTTTTCTTTATATTTCTTGATATCACACTTCTCCTTTATGTGTCTGCACAATAAAAGTTGTACCTGGAGTTGTGTACTTCTAGCAAAGTTTTACTTGTTTTCAACTTCAGCTAGATGAATAGGATCGTTATTTGCATATTTTTTAAGGTCAAGGAGGTCTGACAATCTTTTTTTAGTCGTGAACCCATTTCACAAGTCCCTTCGACGTATTTTCTTTGTTCTATAGGATAAAACTTTTTTGTAATGTACATGCCCTTTCTAGTATAAGGTAGTAACAACTAAACATCAAAATTTGTTTTAAAAGGTAACAATCTTATTATCTTTATATTTACATATCACAAGAGCAAAGTATATCCTCATTCTTTCAAGGAATCTATTGTCTCTAACAGTGGATCCAGATCATCGGGAATTCTTCTTTACACCAAAAACGAAGTGAAATTTTTCTTGATTTTATGAATAGGGCTGTTTTTTAGGAGTAAGCATTAATATGCAATCCACCTAAAGTTTCTCGGCTCAAAGAGAGTGAGTTTGGTAAGTTTAATAATGGGTAAATCATATAACTGAGCTCGTCAAAGAGTCTCTATCTTTTCCTTCTCTTGGGTAAATTTCGAGAAGGAAAAGTTAGAGGGCAGCAAATAGTTCTTGTCCGTGTCTTATTTTCTTGGTTGGAAATATAATCAGAATACATTTGGTCTCTCAATGAAATCAGTAGTGTCTTTGACGAGCTTAGTTATAACTCCGAGATGCTTTATCATAGCTTCTGAAGTCGGTCTCACTAGTCACGACATTACTTAACTTTTCAAAGAAATTGGTCTCATGTCAAGTTGTTTGAGCTTATTTTATGTTTTCTTATTTTCTTTATCTGATTGATTTGATTCATTAAATGTATCCTTCCAAACAGATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAA</genome_strand>
        <mrna_strand>GAAGCTGATCTTGGTTATCCTCAACATCGGTCTTGTACTCTGGAATTTGATGGGACTTCAAAAGGAAACCCAGGACAAGCTGGTGCATGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTGGGCTGCGTGAAGGTTTACGAATAACAACAACCACTGTTGATGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCGAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTTCGGTAATTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550917" ref_strand="+" ref_description="SGN-E550917 [TUS-54-F21]">
      <seq>gagctgcagatctgactgaaagtctctttggggctctagtaccatgcccttttcagcatcaatcttcttacaaaggtggagcgtctgagcatacacctaaaaagaggtctcacgaagcaatgtggtcagaatatgcggatgctgttggatcagttgttgcttcccatgattccctaagaaagcatatcaagtataaacctcctaagggtgaccagcaagctctatcatccggtgtttatgctgttggaatgaaggaagctgatcgtggttatcctcagcagcggtcttgtactcttgaatttgatggtacttcaaaaggaaacccaggacaagctggtgcaggagctgtagtacgagctgacgatggaagtttgatctgtaggctgcgtgaaggtttaggaatagcaacaaccagtgttgctgaatatcgaggctttatcttgggtttgaaatatgcacatagcanagggtttacaagtattcgtgctcagggtgattccaacttgtttgtatgcagatccagggtctatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="82121" stop="77988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81821" g_stop="81766" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80863" g_stop="80783" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="137" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878">
            <donor d_prob="0.919" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78904" g_stop="78809" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="233" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78655" g_stop="78515" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="374" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78435" g_stop="78292" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="517" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E550917" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81821" e_stop="81766"/>
          <exon e_start="80863" e_stop="80783"/>
          <exon e_start="78904" e_stop="78809"/>
          <exon e_start="78655" e_stop="78515"/>
          <exon e_start="78435" e_stop="78292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCGGTAAGTTGGGGCTATATTAGCTTTTTGTGTAAGTCGGTCAGCGTTTATAGCAGTTGCTTTTGATGTATATCTCGTTTCTTGTTCTACAGAGAGAGCTAACTTAATGTGCCTATAGTTTTTGGTTATCTTACAAAGTACATTCTTCTATTTGCACCTCTCTGGATATGGAAGCAGGATTATAACAGTAGGGGCTTGTTTGCTTAATTTTCCTTAAGATGCCATAGTAAATGGTCTCACAACTTACATGAGAAAGCTAGTTATTCAGCTGGAAGGCAATTTTCTTTCCTAAAGTAGATCTACTTGGAATTTGAAGACTGGATACTAATCCATTGTGAGCAAAATGTCCGTATTTTTCTATTATGTCTGGGTAACCCTTTTTGAAGAAATGATTATGTAAGGAGGTTGAAAAGTCTCCAATACGGTACCTGTTAATGAGCTAAATCTGTTTAAACGGAATACTAGTAGCTTGTTAATAGGTTTCTACAGCTGTTTTTAGAAATATCTCGATATAGCAGTAGCAGTACTTGTCGTTGACAAGTCTCCGCAGCTATTGTAGTTGTGTATAAATAAAACTAAAACTAAAAATAGGTCAGAGTGGGCCATTAATAAGAACAGTAATGAGTAGATTGTCTGGCTACATACAAAGTATTGAAAATAGAAGTGTATTTCAATAAAATAAAAATAGGTCATGCTGGGTGGCTTATAAGAAAAGTAGCTTGCCAGCAAGTTCTTGCAACTGTTGTTATCTTTGCTTTTTATTATTTCTTAGTAAAAACTCATGTAAGGTATTGAACTTTATTAGATTGAACGTCATAACAAAGGATATGTAGTTCTGTGAATCATTTCAAGGAGCCACATCCTAGTAAATGTAGCTAGAGATCTGAAAATACTATTTCTAGTAAAAGGTGTCTTTCCGTGTTACAGATTGCCATAATTCTTCTGATAAAGAAGATTCCAGTAAGTTATTGTGATGAAAAACATTTATAATGTGGAAGGAACAGCAAAAAACAGTATCAGTATCATCCTTCCTGTTTAGAATTTTTTTCCTCTCATTTGTCATCTAGTTTATTACATGTGACGTGTGTATCAAGTATTTTATTAGATGACGGGATGATCCCAGCTTACCACGTCGATGTGTTGATAAAGCAAAAAGAATGGTGGAAATGGAAAAAGAATTAATGTTTCTGACTGAAATTTCCCCTAATTGACTAACAAATTCAAGGGCACTCTCAAATATGGATAAAAAGTTCCCTATTACTATTCTGGTGTTGGTAATAAATATAATTAAGAGCTATAATCTTCAACTTCTGCGACTGCGGACTAGGCTTAATAACAAGATGGGAAACCTTTTTTCCCAAACCGTTGCATGGGATGACTTTTCGGGAGTGCTGAGTAGTTTAAATGAACCAGATGGATAACCTTCGTCTTCTCTTTGATGGAGCTGACGTCTGGATATTTTGCTGAGCAATTACTGTGCTTACCTTAGCTCTGATGAAAGACTTCCTGTTTTCTGCAAAGTTTGCATTGAGCATTAAAGGGGAACTAATACTACCTTTTGGTTGATCAAAGACATATTTAGGTTACTTAAGTGTTACCATTTTATGAGTTCTGACATCTTTTTGTGCGCAAAGTATGTAAAGTTGCGATTGTCAAACCATATTCTTTGCAATATTTTGTTGCTGTACTGTATTCTTCTACCTGGCTCTTGGAGAGGTATATAATGTTAATTTTGGCTCAAAGTAGTACTGAATACTTACACTTAAGAAAGAAATACTAGTTACAAAATGATATACTAGTTTCTTGTGTCCACACCTATACGATCTGTTTGGCTTGCCACACTTTGGAATCTATCTTGTTCATTGGCATGTTTATTTGCAGGATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGTGTGAGTGGCTGTTAAAATGATGGCTTCTTATGAAAAAACATAAATGATTTCAGTATATATGATTAAAAAATAAATTGTCTTTATACTTAATGGGAAGTCGGCGAAGCTAATCAATCTTAATATCAAGTTGAGTTCTTTTAAATTCTCTTGAAGGTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG</genome_strand>
        <mrna_strand>GAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTTACAAAGGTGGAGCGTCTGAGCATACACCTAAAAAGAGGTCTCACGAAGCAATGTGGTCAGAATATGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAGTTGTTGCTTCCCATGATTCCCTAAGAAAGCATATCAAGTATAAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGT.........................................................................................................................................................GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG...............................................................................ATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCANAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCC-AACTTGTTTGTATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688666" ref_strand="+" ref_description="SGN-E688666 [t3_tus_54_F21]">
      <seq>gagctgcagatctgactgaaagtctctttggggctctagtaccatgcccttttcagcatcaatcttcttaccaaggtggagcgtctgagcatacacctaaaaagaggtctcacgaagcaatgtggtcagaatatgcggatgctgttggatcagttgttgcttcccatgattccctaagaaagcatatcaagtataaacctcctaagggtgaccagcaagctctatcatccggtgtttatgctgttggaatgaaggaagctgatcgtggttatcctcagcagcggtcttgtactcttgaatttgatggtacttcaaaaggaaacccaggacaagctggtgcaggagctgtagtacgagctgacgatggaagtttgatctgtaggctgcgtgaaggtttaggaatagcaacaaccagtgttgctgaatatcgaggctttatcttgggtttgaaatatgcacatagcanagggtttacaagtattcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="82121" stop="78023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81821" g_stop="81766" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80863" g_stop="80783" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="137" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878">
            <donor d_prob="0.919" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78904" g_stop="78809" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="233" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78655" g_stop="78515" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="374" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78435" g_stop="78323" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="487" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E688666" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81821" e_stop="81766"/>
          <exon e_start="80863" e_stop="80783"/>
          <exon e_start="78904" e_stop="78809"/>
          <exon e_start="78655" e_stop="78515"/>
          <exon e_start="78435" e_stop="78323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCGGTAAGTTGGGGCTATATTAGCTTTTTGTGTAAGTCGGTCAGCGTTTATAGCAGTTGCTTTTGATGTATATCTCGTTTCTTGTTCTACAGAGAGAGCTAACTTAATGTGCCTATAGTTTTTGGTTATCTTACAAAGTACATTCTTCTATTTGCACCTCTCTGGATATGGAAGCAGGATTATAACAGTAGGGGCTTGTTTGCTTAATTTTCCTTAAGATGCCATAGTAAATGGTCTCACAACTTACATGAGAAAGCTAGTTATTCAGCTGGAAGGCAATTTTCTTTCCTAAAGTAGATCTACTTGGAATTTGAAGACTGGATACTAATCCATTGTGAGCAAAATGTCCGTATTTTTCTATTATGTCTGGGTAACCCTTTTTGAAGAAATGATTATGTAAGGAGGTTGAAAAGTCTCCAATACGGTACCTGTTAATGAGCTAAATCTGTTTAAACGGAATACTAGTAGCTTGTTAATAGGTTTCTACAGCTGTTTTTAGAAATATCTCGATATAGCAGTAGCAGTACTTGTCGTTGACAAGTCTCCGCAGCTATTGTAGTTGTGTATAAATAAAACTAAAACTAAAAATAGGTCAGAGTGGGCCATTAATAAGAACAGTAATGAGTAGATTGTCTGGCTACATACAAAGTATTGAAAATAGAAGTGTATTTCAATAAAATAAAAATAGGTCATGCTGGGTGGCTTATAAGAAAAGTAGCTTGCCAGCAAGTTCTTGCAACTGTTGTTATCTTTGCTTTTTATTATTTCTTAGTAAAAACTCATGTAAGGTATTGAACTTTATTAGATTGAACGTCATAACAAAGGATATGTAGTTCTGTGAATCATTTCAAGGAGCCACATCCTAGTAAATGTAGCTAGAGATCTGAAAATACTATTTCTAGTAAAAGGTGTCTTTCCGTGTTACAGATTGCCATAATTCTTCTGATAAAGAAGATTCCAGTAAGTTATTGTGATGAAAAACATTTATAATGTGGAAGGAACAGCAAAAAACAGTATCAGTATCATCCTTCCTGTTTAGAATTTTTTTCCTCTCATTTGTCATCTAGTTTATTACATGTGACGTGTGTATCAAGTATTTTATTAGATGACGGGATGATCCCAGCTTACCACGTCGATGTGTTGATAAAGCAAAAAGAATGGTGGAAATGGAAAAAGAATTAATGTTTCTGACTGAAATTTCCCCTAATTGACTAACAAATTCAAGGGCACTCTCAAATATGGATAAAAAGTTCCCTATTACTATTCTGGTGTTGGTAATAAATATAATTAAGAGCTATAATCTTCAACTTCTGCGACTGCGGACTAGGCTTAATAACAAGATGGGAAACCTTTTTTCCCAAACCGTTGCATGGGATGACTTTTCGGGAGTGCTGAGTAGTTTAAATGAACCAGATGGATAACCTTCGTCTTCTCTTTGATGGAGCTGACGTCTGGATATTTTGCTGAGCAATTACTGTGCTTACCTTAGCTCTGATGAAAGACTTCCTGTTTTCTGCAAAGTTTGCATTGAGCATTAAAGGGGAACTAATACTACCTTTTGGTTGATCAAAGACATATTTAGGTTACTTAAGTGTTACCATTTTATGAGTTCTGACATCTTTTTGTGCGCAAAGTATGTAAAGTTGCGATTGTCAAACCATATTCTTTGCAATATTTTGTTGCTGTACTGTATTCTTCTACCTGGCTCTTGGAGAGGTATATAATGTTAATTTTGGCTCAAAGTAGTACTGAATACTTACACTTAAGAAAGAAATACTAGTTACAAAATGATATACTAGTTTCTTGTGTCCACACCTATACGATCTGTTTGGCTTGCCACACTTTGGAATCTATCTTGTTCATTGGCATGTTTATTTGCAGGATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGTGTGAGTGGCTGTTAAAATGATGGCTTCTTATGAAAAAACATAAATGATTTCAGTATATATGATTAAAAAATAAATTGTCTTTATACTTAATGGGAAGTCGGCGAAGCTAATCAATCTTAATATCAAGTTGAGTTCTTTTAAATTCTCTTGAAGGTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGC</genome_strand>
        <mrna_strand>GAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTTACCAAGGTGGAGCGTCTGAGCATACACCTAAAAAGAGGTCTCACGAAGCAATGTGGTCAGAATATGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGTTGGATCAGTTGTTGCTTCCCATGATTCCCTAAGAAAGCATATCAAGTATAAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGT.........................................................................................................................................................GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG...............................................................................ATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCANAGGGTTTACAAGTATTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252927" ref_strand="+" ref_description="SGN-E252927 [cLEG-25-I11]">
      <seq>gctgcagatctgacctgaaagtctctttggggctctagtcccatgccccttttcagcatcaatcttcttccaaaggtggagccgtctgagcatacccccgaagaagaggtctcaggaagccaatgtggtcagaatatgcggatgcctgttggatcagttgttgcttcaaatgattccctaagaaagcatatcaagttagaacctcctaagggtgacccagcaagctctatcatccggtgtttatgctgttggaatgaaggaagctgatcgtggttatcctcagcagcggtcttgtactcttgaattcgatggtacttcaaaaggaaacccaggacaagctggtgcaggagctgtagtacgagctgacgatggaagtttgatctgtaagctgcgtgaaggtttaagaatagcaacaaccagtgttgctgaatatcgaggctttatcttgggtttgaaatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="82119" stop="78052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81819" g_stop="81766" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.822" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80863" g_stop="80783" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="140" r_length="84" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878">
            <donor d_prob="0.919" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78904" g_stop="78809" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="238" r_length="98" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78655" g_stop="78515" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="379" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78435" g_stop="78352" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="463" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E252927" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81819" e_stop="81766"/>
          <exon e_start="80863" e_stop="80783"/>
          <exon e_start="78904" e_stop="78809"/>
          <exon e_start="78655" e_stop="78515"/>
          <exon e_start="78435" e_stop="78352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCAGATCTGA-CTGAAAGTCTCTTTGGGGCTCTAGTACCATG-CCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTTCCAAAGGTGGAG-CGTCTGAGCATACGCC-GAAGAAGAGGTCTCAGGAAG-CAATGTGGTCAGAATATGCGGTAAGTTGGGGCTATATTAGCTTTTTGTGTAAGTCGGTCAGCGTTTATAGCAGTTGCTTTTGATGTATATCTCGTTTCTTGTTCTACAGAGAGAGCTAACTTAATGTGCCTATAGTTTTTGGTTATCTTACAAAGTACATTCTTCTATTTGCACCTCTCTGGATATGGAAGCAGGATTATAACAGTAGGGGCTTGTTTGCTTAATTTTCCTTAAGATGCCATAGTAAATGGTCTCACAACTTACATGAGAAAGCTAGTTATTCAGCTGGAAGGCAATTTTCTTTCCTAAAGTAGATCTACTTGGAATTTGAAGACTGGATACTAATCCATTGTGAGCAAAATGTCCGTATTTTTCTATTATGTCTGGGTAACCCTTTTTGAAGAAATGATTATGTAAGGAGGTTGAAAAGTCTCCAATACGGTACCTGTTAATGAGCTAAATCTGTTTAAACGGAATACTAGTAGCTTGTTAATAGGTTTCTACAGCTGTTTTTAGAAATATCTCGATATAGCAGTAGCAGTACTTGTCGTTGACAAGTCTCCGCAGCTATTGTAGTTGTGTATAAATAAAACTAAAACTAAAAATAGGTCAGAGTGGGCCATTAATAAGAACAGTAATGAGTAGATTGTCTGGCTACATACAAAGTATTGAAAATAGAAGTGTATTTCAATAAAATAAAAATAGGTCATGCTGGGTGGCTTATAAGAAAAGTAGCTTGCCAGCAAGTTCTTGCAACTGTTGTTATCTTTGCTTTTTATTATTTCTTAGTAAAAACTCATGTAAGGTATTGAACTTTATTAGATTGAACGTCATAACAAAGGATATGTAGTTCTGTGAATCATTTCAAGGAGCCACATCCTAGTAAATGTAGCTAGAGATCTGAAAATACTATTTCTAGTAAAAGGTGTCTTTCCGTGTTACAGATTGCCATAATTCTTCTGATAAAGAAGATTCCAGTAAGTTATTGTGATGAAAAACATTTATAATGTGGAAGGAACAGCAAAAAACAGTATCAGTATCATCCTTCCTGTTTAGAATTTTTTTCCTCTCATTTGTCATCTAGTTTATTACATGTGACGTGTGTATCAAGTATTTTATTAGATGACGGGATGATCCCAGCTTACCACGTCGATGTGTTGATAAAGCAAAAAGAATGGTGGAAATGGAAAAAGAATTAATGTTTCTGACTGAAATTTCCCCTAATTGACTAACAAATTCAAGGGCACTCTCAAATATGGATAAAAAGTTCCCTATTACTATTCTGGTGTTGGTAATAAATATAATTAAGAGCTATAATCTTCAACTTCTGCGACTGCGGACTAGGCTTAATAACAAGATGGGAAACCTTTTTTCCCAAACCGTTGCATGGGATGACTTTTCGGGAGTGCTGAGTAGTTTAAATGAACCAGATGGATAACCTTCGTCTTCTCTTTGATGGAGCTGACGTCTGGATATTTTGCTGAGCAATTACTGTGCTTACCTTAGCTCTGATGAAAGACTTCCTGTTTTCTGCAAAGTTTGCATTGAGCATTAAAGGGGAACTAATACTACCTTTTGGTTGATCAAAGACATATTTAGGTTACTTAAGTGTTACCATTTTATGAGTTCTGACATCTTTTTGTGCGCAAAGTATGTAAAGTTGCGATTGTCAAACCATATTCTTTGCAATATTTTGTTGCTGTACTGTATTCTTCTACCTGGCTCTTGGAGAGGTATATAATGTTAATTTTGGCTCAAAGTAGTACTGAATACTTACACTTAAGAAAGAAATACTAGTTACAAAATGATATACTAGTTTCTTGTGTCCACACCTATACGATCTGTTTGGCTTGCCACACTTTGGAATCTATCTTGTTCATTGGCATGTTTATTTGCAGGATG-CTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGA-CCAGCAAGCTCTATCATCCGGTGTGAGTGGCTGTTAAAATGATGGCTTCTTATGAAAAAACATAAATGATTTCAGTATATATGATTAAAAAATAAATTGTCTTTATACTTAATGGGAAGTCGGCGAAGCTAATCAATCTTAATATCAAGTTGAGTTCTTTTAAATTCTCTTGAAGGTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCA</genome_strand>
        <mrna_strand>GCTGCAGATCTGACCTGAAAGTCTCTTTGGGGCTCTAGTCCCATGCCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTTCCAAAGGTGGAGCCGTCTGAGCATACCCCCGAAGAAGAGGTCTCAGGAAGCCAATGTGGTCAGAATATGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCCAGCAAGCTCTATCATCCGGT.........................................................................................................................................................GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTCGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG...............................................................................ATCTGTAAGCTGCGTGAAGGTTTAAGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335324" ref_strand="+" ref_description="SGN-E335324 [cTOE-1-J20]">
      <seq>cggagactcttggtttgtttggaacaccagtaggagggaattgatttagccacttttacctcaaagtttggactttttgaagccaaaagggaagaagaatcaactgtaacaatgttgagtatgttagtattgatctggaattaagttttaccaggaatgcgtcaagtctgaggaaagtcccatgtaatgaattcttgtttcatgccatgttttgttgcaatattgaccaagcacctaccatatctgccttgaagagttcaatttgttgaagtctggtgatatcttggaggatgagcttttgcacatccttgaattagaaagtcgattttgacttgtttctggatagaattagcatctaacaagtgtagtggtgataattctcttttacggaagttttatcccgttccaataatgaaggaagacagagatggtttctttgttgttaagaaaggagatattgttggagtatacagaaacttgggtgactgccagactcaagtcggatcctcgatatgtgatcctccggttagtgtgtataaaggctactccatgccaaaggacacggaggaatatcttctatcttgtggacttaaaaatgcattatattctatcagagctgcagatctgactgaaagtctctttggggctctagtaccatgcccttttcagcatcaatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="84697" stop="80551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84397" g_stop="84257" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84256" i_stop="82949" i_length="1308">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82948" g_stop="82589" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="510" r_length="365" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82588" i_stop="81925" i_length="664">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81924" g_stop="81766" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="669" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80863" g_stop="80851" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="682" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E335324" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84397" e_stop="84257"/>
          <exon e_start="82948" e_stop="82589"/>
          <exon e_start="81924" e_stop="81766"/>
          <exon e_start="80863" e_stop="80851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGA-GGAATTGATTTAGCTATTTTTA-CTCAAAGTTTGGA-TTTTTGAAG-CAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAGGTATTTTACTTTATTTTTCCATAGTAAGTGGCTCCATAGTAAATAATTTAGTAACTGTGACTGGCCTTCCTCGGGAGTTTAGTGTAAGGGGCTGTCCTTTTTTTGCATTCTTGCTTTGGTAATGTTTCTTTTGAATCGAGAGTAAACAACATATATGCCTCCCAAATACTAAGATAGGGGTTATGTTTGCGTAATCCTACCCTCCCCAAACTCACTTGTGGGATTACATAACGTTTGTTGTTGTTGTCGTCGTCGTTGTTGTTGTTTTTCTTATGCTGATCAACAATGAGGAGAGAAAGAATACTTTTCAATTTGTTTGTGACTCGGAGTTTAAGAAATTAATTTAGCCTTTTTACTCAAAGTTCGGATTTTTGAGGCAAAAAAAGAAGAAGAATCCAGTGCAACGTTCTTGAGTATCCAAGTTTTGAGCTGGAATTATGGTGTTTTGCTTTTTGTTCCACAATAAGTTGCTCCGAAGTAAATAATTTACGATGGGGTTGTAATAGACTCTTGTGATCAGCCCTTCTCTTGAGCTTTAGTGCACTAGGCTTCCCTCTTTGCATTCTTGCTTTGATAACGTTTCTTTTGAATAGAAGGTCTATGGGAAACTACATCTCTACCCCACAAAGGTGGGGGTAAAGTTTGCCTATATCCTACCCTCCCCATACTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTA-CAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATG-CATGTTTTGTTGCAATATTGA-CAAGCA-CTA-CATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCGGTAACTATTGGAGGAATTTATATCTGCATTTTTATTATATAATGTGTGTATGTACACATATATATGTCTATATGTATACAAAGCTAGATATATGTATGTATGTCTGTGGATTTATATGGTGTCAACTGTGACTTTTCTCACTTTTCCCCTTGGTGGCTTGAACTCCCAATCTATTAGTTGGCACTGGAGTGCTCTTGCCACTGGATAAACTTCACTTGTCAACTTGTAGTTAATATACATATAGCGGATGCTACACCACATTTATCTTATCTGTTCTTTTCCTCGTGAATTTATGCAGATATAGTTGCACTGCAAGAACTTCATAAAATAAGTTTGACCTTATTTATTTGCTACATCTTCATTTACATAGGTCGACAGGAAGCTGGTGCATAATTTATCTGCAGATTTCAGCATTTCCTTGATGCTTTCCTTGTATGAATAAAATTATTTTTCAAAAGGAATAACATTTATTACAGCTTCAACTTGGTTTTCTTAATCAATGATAAAGTTATAGAAGTGTAGGAATTTCTCTTACAGAATAGGGGTGGTAAAGGCAGTTCCGTTATCTGTGTCCATCAATGGTTATATACCAATGTGCATGAAATGGGAAATATATCAAACTTGCAGTGCTTTAATCGGTTCCCCCTGCCCCTTTCTTTGACAGATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAGGTAAGACATTGTACTAAATTGTGTGCAAAAATTGTCTCTTTGTCTTTTATAATTGAAGTATATCATCTCAGAACTTTTGGAAGAAGGCAATCCTTGTTCACATCAGCTTTCTTTTCCAGGAGACGCAAAGGACTTCCAAAAATAAGAAAAGGAACAAGGGATAGAGTTAAAATTTGTCTTTCTGATCTAAATTTTGACTTAATAAATCATGTTGTGAGTTTGATGCAAGACTAATTTGAACATGTGGGTTCCTTTCTAGAACTACTTAATTACTAAAAACTCTCCCTTCCACTTATTATACAGTTCACACTACCCAAGAGAGAATCCTAAACTAGAGGTAAAACCAAACGTGAATTGATAGAATTCGGATGTATTTACTAAAGCCATGATATCCCCATCTGATTTTGTTGCATAAAGAAAAAAAGTTAAAGTTGAGCTCTTTATGTCATTAGCAGAATTGGCGGAGTCCTTCCATGGTGTTTGCCTTGGGGGAATATTTTTAACTTTAAAAGTCGACTTCTGCCTTTATGATATAGAAGGGATGAAGACTTATTACCTAAGTCCTCACAGATCCCTAATTAAGGAAAAGATTACAAAATTTTGTGCTGATCCCTTACCATATGAACAAATGATAAAAAGGAGAAAGTGTGCTTAGTTAAATTACATTATACATGGGACAGATACCACATAGCTGTTCTTCTACATATCAATACTATCAAAAATGATCTCTAAATGCAGCTGATTCAGTTATTTATTTTGTACTAGATTAAGTTAAATTTCCTACTTATTGATGTGAATACCCCTGTTATCAGTAGTACTTGTAAAAATTGGTGAAAGATGCTTACATCTCTTTTTTTGAACCAGTCATTGTCATACAATTTATCAGCACTAAATTTTTGCAGCATCAATCTTCTT</genome_strand>
        <mrna_strand>CGGAGACTCTTGGTTTGTTTGGAACACCAGTAGGAGGGAATTGATTTAGCCACTTTTACCTCAAAGTTTGGACTTTTTGAAGCCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACCAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCCATGTTTTGTTGCAATATTGACCAAGCACCTACCATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATCCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329226" ref_strand="+" ref_description="SGN-E329226 [cTOD-2-O23]">
      <seq>aaatcctcttttttctacaaactctcttcgcaatttgttcttcaattttgcggtcgaagattggcgcaatttcatcaactaattcaatcggagattcttggtttgtttggaaatacagtaggaggaattgatttagctatttttactcaaagtttggatttttgaagcaaaagggaagaagaatcaactgtaacaatgttgagtatgttagtattgatctggaattaagttttacaggaatgcgtcaagtctgaggaaagtcccatgtaatgaattcttgtttcatgcatgttttgttgcaatattgacaagcactacatatctgccttgaagagttcaatttgttgaagtctggtgatatcttggaggatgagcttttgcacatgcttgaattagaaagtcgattttgacttgtttctggatagaattagcatctaacaagtgtagtggtgataattctcttttacggaagttttatcccgttccaataatgaaggaagacagagatggtttctttgttgttaagaaaggagatattgttggagtatacagaaacttgggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="84964" stop="82313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84664" g_stop="84577" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84576" i_stop="84398" i_length="179">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84397" g_stop="84257" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="229" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84256" i_stop="82949" i_length="1308">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82948" g_stop="82613" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="565" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E329226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84664" e_stop="84577"/>
          <exon e_start="84397" e_stop="84257"/>
          <exon e_start="82948" e_stop="82613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCTCTTTTTTCTACAAACTCTCTTCGCAATTTGTTCTTCAATTTTGCGGTCGAAGATTGGCGCAATTTCATCAACTAATTCAATGTATGTGATCTTCATTTGTTTATATATGTATATATTTATTAGTTAAACACAACAATTTTGATTTGACTACCCATTTTTTGTTGATTTTTTTTCAAAATTAGGGTTCTAATTTTTGGTGTAGCATTTTGAGTTTTCTTCATTTTAGTGTTATTGAAGCTTCTATTCTTTGATTTTATCAGCGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGAGGAATTGATTTAGCTATTTTTACTCAAAGTTTGGATTTTTGAAGCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAGGTATTTTACTTTATTTTTCCATAGTAAGTGGCTCCATAGTAAATAATTTAGTAACTGTGACTGGCCTTCCTCGGGAGTTTAGTGTAAGGGGCTGTCCTTTTTTTGCATTCTTGCTTTGGTAATGTTTCTTTTGAATCGAGAGTAAACAACATATATGCCTCCCAAATACTAAGATAGGGGTTATGTTTGCGTAATCCTACCCTCCCCAAACTCACTTGTGGGATTACATAACGTTTGTTGTTGTTGTCGTCGTCGTTGTTGTTGTTTTTCTTATGCTGATCAACAATGAGGAGAGAAAGAATACTTTTCAATTTGTTTGTGACTCGGAGTTTAAGAAATTAATTTAGCCTTTTTACTCAAAGTTCGGATTTTTGAGGCAAAAAAAGAAGAAGAATCCAGTGCAACGTTCTTGAGTATCCAAGTTTTGAGCTGGAATTATGGTGTTTTGCTTTTTGTTCCACAATAAGTTGCTCCGAAGTAAATAATTTACGATGGGGTTGTAATAGACTCTTGTGATCAGCCCTTCTCTTGAGCTTTAGTGCACTAGGCTTCCCTCTTTGCATTCTTGCTTTGATAACGTTTCTTTTGAATAGAAGGTCTATGGGAAACTACATCTCTACCCCACAAAGGTGGGGGTAAAGTTTGCCTATATCCTACCCTCCCCATACTCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGAC</genome_strand>
        <mrna_strand>AAATCCTCTTTTTTCTACAAACTCTCTTCGCAATTTGTTCTTCAATTTTGCGGTCGAAGATTGGCGCAATTTCATCAACTAATTCAAT...................................................................................................................................................................................CGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGAGGAATTGATTTAGCTATTTTTACTCAAAGTTTGGATTTTTGAAGCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211475" ref_strand="+" ref_description="SGN-E211475 [cLEC-67-H21]">
      <seq>tcacttgtgggataacagtgggtttgttgttattgttgatattctcaaccatgggaaaaaaaggaatactctttccgttttaatttgttttatctgatttcactttgacagtgttaaaaaatatagaagaccttttgaatcttacggtcataagctaaagatatgtagatgtaccaaaaatgcttttaaacttgtgattttggacatgtcacgtggaaggttagaattaaggagttgctaaaaaaggaacgaggcattctttttgaaatggactaaaagggaaagtaagataaacaaattgaaatggaggaagtatattgtttgaaaatagagcagaatatggactttttattggctgtgtttggtatcagtatgatgaaagtcattttccataataattgttttttctagtttctggttaccaaaaaaatgtttttcttcaaaagaggaaatgacttccctgataagaagtattttccgtacaactaaacttttagcgtcatgtttcttgatccaactaacacttgttaacacatgtttcatgttacaatatttggggaatttatgtatatacatgcatgcatggttcatttgagttaaaaaattaaagaaagcttttttgtgttttcttactttttagttttacaggaatgcgtcaagtctgaggaaagtcccatgtaatgaattcttgtttcatgcatgttttgttgcaatattgacnagcactacatatctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="83888" stop="82550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83588" g_stop="82850" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E211475" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83588" e_stop="82850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCT</genome_strand>
        <mrna_strand>TCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACNAGCACTACATATCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290694" ref_strand="+" ref_description="SGN-E290694 [cLET-10-A16]">
      <seq>ggcgatgggtgcaaccaccgtgaacggcggcgattcagaatcgacatcactgttaactccttcaaatcctaaaattccgaaggacagtttccacatagcttacataatctactttactctcggtgccggttatctactcccatggaacgcattcatcaccgccgtcgattacttcagttacctttacccggacgttatggtagatcgtatctttgccattgtttacatgatcgtcggattgatcggtttgcttttcattgttgctttttctaataagactagtgcttttgttaggattaatgttggaatgtttttatttgtggttgcgcttgttacggtgccgctgatggatgtgttttatgtggatgggagagttggagtgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98024" stop="99010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98324" g_stop="98710" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E290694" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98324" e_stop="98710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGGGTGCAACCACCGTGAACGGCGGCGATTCAGAATCGACATCACTGTTAACTCCTTCAAATCCTAAAATTCCGAAGGACAGTTTCCACATAGCTTACATAATCTACTTTACTCTCGGTGCCGGTTATCTACTCCCATGGAACGCATTCATCACCGCCGTCGATTACTTCAGTTACCTTTACCCGGACGTTATGGTAGATCGTATCTTTGCCATTGTTTACATGATCGTCGGATTGATCGGTTTGCTTTTCATTGTTGCTTTTTCTAATAAGACTAGTGCTTTTGTTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGC</genome_strand>
        <mrna_strand>GGCGATGGGTGCAACCACCGTGAACGGCGGCGATTCAGAATCGACATCACTGTTAACTCCTTCAAATCCTAAAATTCCGAAGGACAGTTTCCACATAGCTTACATAATCTACTTTACTCTCGGTGCCGGTTATCTACTCCCATGGAACGCATTCATCACCGCCGTCGATTACTTCAGTTACCTTTACCCGGACGTTATGGTAGATCGTATCTTTGCCATTGTTTACATGATCGTCGGATTGATCGGTTTGCTTTTCATTGTTGCTTTTTCTAATAAGACTAGTGCTTTTGTTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGCTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310815" ref_strand="+" ref_description="SGN-E310815 [cLEZ-15-K9]">
      <seq>ttaggattaatgttggaatgtttttatttgtggttgcgcttgttacggtgccgttgatggatgtgttttatgtggatgggagagttggagtgtatgccggttttggtgttactgttggtttggttggaatttgtggaattgctgatgcgttggttcagggtggagttgttggagctgccggtgagttgccggaacggtatatgcaggccactttcgccggaactgctgcttctggtgtacttgtttcgttgctaagaattttaaccaaagctgtatatccacaagatgctaatgggctgagaaagagtgcaaacctttattttattttcagcattgctgtgatgattctgtgcatagtcttttacaatattgcacataggcttccaataattaagtactacaatgatcttaaaactcaggcagtgaacgaggagaaagaggataagggcgactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98314" stop="102026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98614" g_stop="98847" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101506" g_stop="101726" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="455" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E310815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98614" e_stop="98847"/>
          <exon e_start="101506" e_stop="101726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGCCGGTTTTGGTGTTACTGTTGGTTTGGTTGGAATTTGTGGAATTGCTGATGCGTTGGTTCAGGGTGGAGTTGTTGGAGCTGCCGGTGAGTTGCCGGAACGGTATATGCAGGCCACTTTCGCCGGAACTGCTGCTTCTGGTATTGAAAGTTCCTCATTTTGCGCTTTGATTTTCAGTATTTGACCTAGAATGTCGCTTTTCTGTGGTTAATTTGAGTCTGATGTTGATGATAATAGGATCTGATCTATGTGTTGAAATGCACTTGACCTGAAATGACTGATGATTCATATAGTGATCTAAGTTATTGGAATGAAATTGGCCTGAATTGATTGATGATTCATATAGTGATCTAAGTTTTTATATTTTAGAATTGAGGTTTGGTTGATATGAAAGTTATAGTTGATGCAACTCAATTTCATGTTTTGGTATGAAGGCTTAGTTGATATTAAAGTTATAGTTGATGCAACTCAATTTCATCTAGAACGTTTATTACTCTAGGTTGCTTCATTTGCTTTGTGTCTTGCTATTTTGCTGTCATATTTTTCTTGCAACATGTTCTGTATATTTATCATTTGAGACGAGGGTCTATTGGTAGCAATCTTTGGATTAAGGTTTATGTATACCCTACACTCCTCATACCAAACTTGTGGGATTACACTGGGTATGTTGTTTGTTCATATAAGAACTGCAGTAGATATTACCATTTTCAAAAAAAAAAATTTAGAGCTGCACTAGATATTCAAACAGCTGTTCAGGGGAAGTATCTGCGTATGAGTCAATGCGGTGGCTTCACTGGTTTTGCTAATTAACTTTGTTTCCTCATCTGTTTAGAATTTGGGGAACTTCAACATCTTCTTCTCCTGGAATGTTTCTATCTGCTTTAACTGTCGCAACTTGTATTTCTAATTGTCCATCCTGTTACCTTGTCTTGCGGATAATCTCTATTCACTCATTTACTAATGGAATAGGATAATTCAATTGAATGAAATCTCATCGTCCCATATTATCATTACCATAGATTGAGATTTAGTTAAATCTGTAATGTAGCTTATGAAGTGTTCTATCAAGGCATTATGTAGTCTGTCTCAATGATCTGATTCCATTTGTTCGTCAATGTGGTTGATATAGATTGAATTCTTTTCACGACTTTATAAAGGAAAAGTTGCTTTAACTATTTAGTTTTTGAATATATTGCTGCTCTTCATGATGGAAGATAGTATGTAATGGAACAAAACATAATGCTAACTATTATTCTGAAAATATTATTTCTTGTTGGGCACCTCTGTGCTCCTTCCTGTAGCGATGTCACATGGGATGATATTGCATGTAATGTCTTTTGAGTTCCAATATCAAATTTTTAGTATTAAAAGAGAGAACATTTTACTATTGGCTATGAAGAACATGCAAGATTTTCCTTATGTAGGTGCTTAAGTACTCTAGATTAAGGAGGTTTGGATTACTAGAAATAAGGTAGGTTTTTGGATTACTGAAAAGTCATTAAATAGAAGTTACTTACATTATAACAAAATAGGAATAATCTATAGTATTAATATAAGCACATATGATGAATCTCGAGCATTCTAACGCATAACTGCACTAATTCTCTTGACTTTCAATGTGCTCCTTATCACAATCAAGCTACTGAAGCAATATGATTTTACAAATCAATAAACTGGTAATCAAATCAAGTAAGCCAAAAGAAGTTACTGTTGATGACATGGCAGTTAATGTGATGATGGGACAATGATACAACAGTTGATTGGGGTGGTGTGTGACAAACTGTCAAGATAGTGAGATGGCAGTGATTTGATGGTGATGTGTTGTTGGATGATGATGTAGAGCAAACTGGATAGTGATAGATCATTGGACATTGATATAGTACTGAATGGATAGTGTTGCTACATGACGACAGAAAAATGACTTGACATACAAACCGTTAACTTGATTAGCAAACATGTATATACTGCTGAATTGACAGGTTTGTTTGGAGCACCAATTTGATAGGTCAATTGACACAGACTATCAGATAAATCTCTTGAGAAAGATGAGCTGTGATGTCAAAGACAGGTTGAAATAGTAGCTGGAATAGTGGACGATGGTGTCGAACGGTCATCAGGAAAGAAGAGTGTTCACACTTGAACGATCAAAAGAAAGATGCCAGCCTGGTAAAATTATGAGGGCAAAAAAAGAAATATTTGAAGTGCATGCGGCATAAGGCTTCCCACCACTAAACTACTAGGTTTTTAACAAGAGATGCTGATACCATGTGAAATAGAGAAAATAAGCAAAAATATTCTATTGCAATTTGGTTATAGGCAATATACAGGAAGCTCCTTGTATAGAAGTTTAGGCTATAGAGAAAAAAGGTAAGTGGAAACAATAGGATATAGAAGTTTAGGCTAATAGAGAAGAAGGTAAGTGGTAACTATAGGAATTAATGGAAATAAGTATAATGGAGAGATATCTAAATAACGAGATTCCTAATTATAACAGTAGAAAGAAGAGTATGGCATTCCATGCAGCCTAGTGTGGCAGTGCATTGGCCTTTCCCTAGACATGTCACTGGGCTTTGGTCTTGTACTTGACACCCCAAGAAACTTCTAGTTGTGACATATTGTCATTTTCTGTGCTATTAACCTTAAGTCATTAGGATGAATCTATAAAAGAACTTTTTAATTATAACTGCTCCAAATCTATTGGCTTTTAACATTTATTCTCCCTTTCTTTTTTGTCCAATCAGCACATTAAGATCAGAAAGTTGGGATAACCATCTTAAGACTCTTCTTCTATGTTGCAGGTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTA</genome_strand>
        <mrna_strand>TTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGCCGGTTTTGGTGTTACTGTTGGTTTGGTTGGAATTTGTGGAATTGCTGATGCGTTGGTTCAGGGTGGAGTTGTTGGAGCTGCCGGTGAGTTGCCGGAACGGTATATGCAGGCCACTTTCGCCGGAACTGCTGCTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378099" ref_strand="+" ref_description="SGN-E378099 [TUS-21-D24]">
      <seq>cactttcgccggaactgctgcttctggtgtacttgtttcgttgctaagaattttaaccaaagctgtatatccacaagatgctaatgggctgagaaagagtgcaaacctttattttattttcagcattgctgtgatgattctgtgcatagtcttttacaatattgcacataggcttccaataattaagtactacaatgatcttaaaactcaggcagtgaacgaggagaaagaggataagggcgacttaactccagaattatggagatcaactctggacatttttgggactgtgaaatggtatggttttggcattgtcagtctttatgtggtcaccttgtctatatttcccggatatatcacagaagacgtgcattctcaacttctgaaggattggtatccgatcttgttgattactggctacaatgtgtttgatctggtggggaagtctctgactcctgtattattttttgatgatgccaaggttgctattggtgcctgcttcgcaagggttgttgttttgcctctattctacgtttgcttacatgggcctgaattctttatgacggagcttcctgtcacaatactaacctgtttactgggattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98522" stop="102385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98822" g_stop="98847" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101506" g_stop="102085" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="606" r_length="580" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E378099" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98822" e_stop="98847"/>
          <exon e_start="101506" e_stop="102085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCGCCGGAACTGCTGCTTCTGGTATTGAAAGTTCCTCATTTTGCGCTTTGATTTTCAGTATTTGACCTAGAATGTCGCTTTTCTGTGGTTAATTTGAGTCTGATGTTGATGATAATAGGATCTGATCTATGTGTTGAAATGCACTTGACCTGAAATGACTGATGATTCATATAGTGATCTAAGTTATTGGAATGAAATTGGCCTGAATTGATTGATGATTCATATAGTGATCTAAGTTTTTATATTTTAGAATTGAGGTTTGGTTGATATGAAAGTTATAGTTGATGCAACTCAATTTCATGTTTTGGTATGAAGGCTTAGTTGATATTAAAGTTATAGTTGATGCAACTCAATTTCATCTAGAACGTTTATTACTCTAGGTTGCTTCATTTGCTTTGTGTCTTGCTATTTTGCTGTCATATTTTTCTTGCAACATGTTCTGTATATTTATCATTTGAGACGAGGGTCTATTGGTAGCAATCTTTGGATTAAGGTTTATGTATACCCTACACTCCTCATACCAAACTTGTGGGATTACACTGGGTATGTTGTTTGTTCATATAAGAACTGCAGTAGATATTACCATTTTCAAAAAAAAAAATTTAGAGCTGCACTAGATATTCAAACAGCTGTTCAGGGGAAGTATCTGCGTATGAGTCAATGCGGTGGCTTCACTGGTTTTGCTAATTAACTTTGTTTCCTCATCTGTTTAGAATTTGGGGAACTTCAACATCTTCTTCTCCTGGAATGTTTCTATCTGCTTTAACTGTCGCAACTTGTATTTCTAATTGTCCATCCTGTTACCTTGTCTTGCGGATAATCTCTATTCACTCATTTACTAATGGAATAGGATAATTCAATTGAATGAAATCTCATCGTCCCATATTATCATTACCATAGATTGAGATTTAGTTAAATCTGTAATGTAGCTTATGAAGTGTTCTATCAAGGCATTATGTAGTCTGTCTCAATGATCTGATTCCATTTGTTCGTCAATGTGGTTGATATAGATTGAATTCTTTTCACGACTTTATAAAGGAAAAGTTGCTTTAACTATTTAGTTTTTGAATATATTGCTGCTCTTCATGATGGAAGATAGTATGTAATGGAACAAAACATAATGCTAACTATTATTCTGAAAATATTATTTCTTGTTGGGCACCTCTGTGCTCCTTCCTGTAGCGATGTCACATGGGATGATATTGCATGTAATGTCTTTTGAGTTCCAATATCAAATTTTTAGTATTAAAAGAGAGAACATTTTACTATTGGCTATGAAGAACATGCAAGATTTTCCTTATGTAGGTGCTTAAGTACTCTAGATTAAGGAGGTTTGGATTACTAGAAATAAGGTAGGTTTTTGGATTACTGAAAAGTCATTAAATAGAAGTTACTTACATTATAACAAAATAGGAATAATCTATAGTATTAATATAAGCACATATGATGAATCTCGAGCATTCTAACGCATAACTGCACTAATTCTCTTGACTTTCAATGTGCTCCTTATCACAATCAAGCTACTGAAGCAATATGATTTTACAAATCAATAAACTGGTAATCAAATCAAGTAAGCCAAAAGAAGTTACTGTTGATGACATGGCAGTTAATGTGATGATGGGACAATGATACAACAGTTGATTGGGGTGGTGTGTGACAAACTGTCAAGATAGTGAGATGGCAGTGATTTGATGGTGATGTGTTGTTGGATGATGATGTAGAGCAAACTGGATAGTGATAGATCATTGGACATTGATATAGTACTGAATGGATAGTGTTGCTACATGACGACAGAAAAATGACTTGACATACAAACCGTTAACTTGATTAGCAAACATGTATATACTGCTGAATTGACAGGTTTGTTTGGAGCACCAATTTGATAGGTCAATTGACACAGACTATCAGATAAATCTCTTGAGAAAGATGAGCTGTGATGTCAAAGACAGGTTGAAATAGTAGCTGGAATAGTGGACGATGGTGTCGAACGGTCATCAGGAAAGAAGAGTGTTCACACTTGAACGATCAAAAGAAAGATGCCAGCCTGGTAAAATTATGAGGGCAAAAAAAGAAATATTTGAAGTGCATGCGGCATAAGGCTTCCCACCACTAAACTACTAGGTTTTTAACAAGAGATGCTGATACCATGTGAAATAGAGAAAATAAGCAAAAATATTCTATTGCAATTTGGTTATAGGCAATATACAGGAAGCTCCTTGTATAGAAGTTTAGGCTATAGAGAAAAAAGGTAAGTGGAAACAATAGGATATAGAAGTTTAGGCTAATAGAGAAGAAGGTAAGTGGTAACTATAGGAATTAATGGAAATAAGTATAATGGAGAGATATCTAAATAACGAGATTCCTAATTATAACAGTAGAAAGAAGAGTATGGCATTCCATGCAGCCTAGTGTGGCAGTGCATTGGCCTTTCCCTAGACATGTCACTGGGCTTTGGTCTTGTACTTGACACCCCAAGAAACTTCTAGTTGTGACATATTGTCATTTTCTGTGCTATTAACCTTAAGTCATTAGGATGAATCTATAAAAGAACTTTTTAATTATAACTGCTCCAAATCTATTGGCTTTTAACATTTATTCTCCCTTTCTTTTTTGTCCAATCAGCACATTAAGATCAGAAAGTTGGGATAACCATCTTAAGACTCTTCTTCTATGTTGCAGGTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAA-GGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGAC</genome_strand>
        <mrna_strand>CACTTTCGCCGGAACTGCTGCTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGGTTGTTG-TTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTATGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238004" ref_strand="+" ref_description="SGN-E238004 [cLED-18-P1]">
      <seq>cactttcgccggaactgctgcttctggtgtacttgtttcgttgctaagaattttaaccaaagctgtatatccacaagatgctaatgggctgagaaagagtgcaaacctttattttattttcagcattgctgtgatgattctgtgcatagtcttttacaatattgcacataggcttccaataattaagtactacaatgatcttaaaactcaggcagtgaacgaggagaaagaggataagggcgacttaactccagaattatggagatcaactctggacatttttgggactgtgaaatggtatggttttggcattgtcagtctttatgtggtcaccttgtctatatttcccggatatatcacagaagacgtgcattctcaacttctgaaggattggtatccgatcttgttgattactggctacaatgtgtttgatctggtggggaagtctctgactcctgtattattttttgatgatgccaaggttgctattggtgcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98522" stop="102279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98822" g_stop="98847" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101506" g_stop="101979" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="500" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E238004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98822" e_stop="98847"/>
          <exon e_start="101506" e_stop="101979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCGCCGGAACTGCTGCTTCTGGTATTGAAAGTTCCTCATTTTGCGCTTTGATTTTCAGTATTTGACCTAGAATGTCGCTTTTCTGTGGTTAATTTGAGTCTGATGTTGATGATAATAGGATCTGATCTATGTGTTGAAATGCACTTGACCTGAAATGACTGATGATTCATATAGTGATCTAAGTTATTGGAATGAAATTGGCCTGAATTGATTGATGATTCATATAGTGATCTAAGTTTTTATATTTTAGAATTGAGGTTTGGTTGATATGAAAGTTATAGTTGATGCAACTCAATTTCATGTTTTGGTATGAAGGCTTAGTTGATATTAAAGTTATAGTTGATGCAACTCAATTTCATCTAGAACGTTTATTACTCTAGGTTGCTTCATTTGCTTTGTGTCTTGCTATTTTGCTGTCATATTTTTCTTGCAACATGTTCTGTATATTTATCATTTGAGACGAGGGTCTATTGGTAGCAATCTTTGGATTAAGGTTTATGTATACCCTACACTCCTCATACCAAACTTGTGGGATTACACTGGGTATGTTGTTTGTTCATATAAGAACTGCAGTAGATATTACCATTTTCAAAAAAAAAAATTTAGAGCTGCACTAGATATTCAAACAGCTGTTCAGGGGAAGTATCTGCGTATGAGTCAATGCGGTGGCTTCACTGGTTTTGCTAATTAACTTTGTTTCCTCATCTGTTTAGAATTTGGGGAACTTCAACATCTTCTTCTCCTGGAATGTTTCTATCTGCTTTAACTGTCGCAACTTGTATTTCTAATTGTCCATCCTGTTACCTTGTCTTGCGGATAATCTCTATTCACTCATTTACTAATGGAATAGGATAATTCAATTGAATGAAATCTCATCGTCCCATATTATCATTACCATAGATTGAGATTTAGTTAAATCTGTAATGTAGCTTATGAAGTGTTCTATCAAGGCATTATGTAGTCTGTCTCAATGATCTGATTCCATTTGTTCGTCAATGTGGTTGATATAGATTGAATTCTTTTCACGACTTTATAAAGGAAAAGTTGCTTTAACTATTTAGTTTTTGAATATATTGCTGCTCTTCATGATGGAAGATAGTATGTAATGGAACAAAACATAATGCTAACTATTATTCTGAAAATATTATTTCTTGTTGGGCACCTCTGTGCTCCTTCCTGTAGCGATGTCACATGGGATGATATTGCATGTAATGTCTTTTGAGTTCCAATATCAAATTTTTAGTATTAAAAGAGAGAACATTTTACTATTGGCTATGAAGAACATGCAAGATTTTCCTTATGTAGGTGCTTAAGTACTCTAGATTAAGGAGGTTTGGATTACTAGAAATAAGGTAGGTTTTTGGATTACTGAAAAGTCATTAAATAGAAGTTACTTACATTATAACAAAATAGGAATAATCTATAGTATTAATATAAGCACATATGATGAATCTCGAGCATTCTAACGCATAACTGCACTAATTCTCTTGACTTTCAATGTGCTCCTTATCACAATCAAGCTACTGAAGCAATATGATTTTACAAATCAATAAACTGGTAATCAAATCAAGTAAGCCAAAAGAAGTTACTGTTGATGACATGGCAGTTAATGTGATGATGGGACAATGATACAACAGTTGATTGGGGTGGTGTGTGACAAACTGTCAAGATAGTGAGATGGCAGTGATTTGATGGTGATGTGTTGTTGGATGATGATGTAGAGCAAACTGGATAGTGATAGATCATTGGACATTGATATAGTACTGAATGGATAGTGTTGCTACATGACGACAGAAAAATGACTTGACATACAAACCGTTAACTTGATTAGCAAACATGTATATACTGCTGAATTGACAGGTTTGTTTGGAGCACCAATTTGATAGGTCAATTGACACAGACTATCAGATAAATCTCTTGAGAAAGATGAGCTGTGATGTCAAAGACAGGTTGAAATAGTAGCTGGAATAGTGGACGATGGTGTCGAACGGTCATCAGGAAAGAAGAGTGTTCACACTTGAACGATCAAAAGAAAGATGCCAGCCTGGTAAAATTATGAGGGCAAAAAAAGAAATATTTGAAGTGCATGCGGCATAAGGCTTCCCACCACTAAACTACTAGGTTTTTAACAAGAGATGCTGATACCATGTGAAATAGAGAAAATAAGCAAAAATATTCTATTGCAATTTGGTTATAGGCAATATACAGGAAGCTCCTTGTATAGAAGTTTAGGCTATAGAGAAAAAAGGTAAGTGGAAACAATAGGATATAGAAGTTTAGGCTAATAGAGAAGAAGGTAAGTGGTAACTATAGGAATTAATGGAAATAAGTATAATGGAGAGATATCTAAATAACGAGATTCCTAATTATAACAGTAGAAAGAAGAGTATGGCATTCCATGCAGCCTAGTGTGGCAGTGCATTGGCCTTTCCCTAGACATGTCACTGGGCTTTGGTCTTGTACTTGACACCCCAAGAAACTTCTAGTTGTGACATATTGTCATTTTCTGTGCTATTAACCTTAAGTCATTAGGATGAATCTATAAAAGAACTTTTTAATTATAACTGCTCCAAATCTATTGGCTTTTAACATTTATTCTCCCTTTCTTTTTTGTCCAATCAGCACATTAAGATCAGAAAGTTGGGATAACCATCTTAAGACTCTTCTTCTATGTTGCAGGTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCT</genome_strand>
        <mrna_strand>CACTTTCGCCGGAACTGCTGCTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236574" ref_strand="+" ref_description="SGN-E236574 [cLED-13-M10]">
      <seq>cactttcgccggaactgctgcttctggtgtacttgtttcgttgctaagaattttaaccaaagctgtatatccacaagatgctaatgggctgagaaagagtgcaaacctttattttattttcagcattgctgtgatgattctgtgcatagtcttttacaatattgcacataggcttccaataattaagtactacaatgatcttaaaactcaggcagtgaacgaggagaaagaggataagggcgacttaactccagaattatggagatcaactctggacatttttgggactgtgaaatggtatggttttggcattgtcagtctttatgtggtcaccttgtctatatttcccggatatatcacagaagacgtgcattctcaacttctgaaggattggtatccgatcttgttgattactggctacaatgtgttcgatctggtggggaagtctctgactcatgtattattgtttgatgatgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98522" stop="102259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98822" g_stop="98847" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101506" g_stop="101959" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="480" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E236574" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98822" e_stop="98847"/>
          <exon e_start="101506" e_stop="101959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCGCCGGAACTGCTGCTTCTGGTATTGAAAGTTCCTCATTTTGCGCTTTGATTTTCAGTATTTGACCTAGAATGTCGCTTTTCTGTGGTTAATTTGAGTCTGATGTTGATGATAATAGGATCTGATCTATGTGTTGAAATGCACTTGACCTGAAATGACTGATGATTCATATAGTGATCTAAGTTATTGGAATGAAATTGGCCTGAATTGATTGATGATTCATATAGTGATCTAAGTTTTTATATTTTAGAATTGAGGTTTGGTTGATATGAAAGTTATAGTTGATGCAACTCAATTTCATGTTTTGGTATGAAGGCTTAGTTGATATTAAAGTTATAGTTGATGCAACTCAATTTCATCTAGAACGTTTATTACTCTAGGTTGCTTCATTTGCTTTGTGTCTTGCTATTTTGCTGTCATATTTTTCTTGCAACATGTTCTGTATATTTATCATTTGAGACGAGGGTCTATTGGTAGCAATCTTTGGATTAAGGTTTATGTATACCCTACACTCCTCATACCAAACTTGTGGGATTACACTGGGTATGTTGTTTGTTCATATAAGAACTGCAGTAGATATTACCATTTTCAAAAAAAAAAATTTAGAGCTGCACTAGATATTCAAACAGCTGTTCAGGGGAAGTATCTGCGTATGAGTCAATGCGGTGGCTTCACTGGTTTTGCTAATTAACTTTGTTTCCTCATCTGTTTAGAATTTGGGGAACTTCAACATCTTCTTCTCCTGGAATGTTTCTATCTGCTTTAACTGTCGCAACTTGTATTTCTAATTGTCCATCCTGTTACCTTGTCTTGCGGATAATCTCTATTCACTCATTTACTAATGGAATAGGATAATTCAATTGAATGAAATCTCATCGTCCCATATTATCATTACCATAGATTGAGATTTAGTTAAATCTGTAATGTAGCTTATGAAGTGTTCTATCAAGGCATTATGTAGTCTGTCTCAATGATCTGATTCCATTTGTTCGTCAATGTGGTTGATATAGATTGAATTCTTTTCACGACTTTATAAAGGAAAAGTTGCTTTAACTATTTAGTTTTTGAATATATTGCTGCTCTTCATGATGGAAGATAGTATGTAATGGAACAAAACATAATGCTAACTATTATTCTGAAAATATTATTTCTTGTTGGGCACCTCTGTGCTCCTTCCTGTAGCGATGTCACATGGGATGATATTGCATGTAATGTCTTTTGAGTTCCAATATCAAATTTTTAGTATTAAAAGAGAGAACATTTTACTATTGGCTATGAAGAACATGCAAGATTTTCCTTATGTAGGTGCTTAAGTACTCTAGATTAAGGAGGTTTGGATTACTAGAAATAAGGTAGGTTTTTGGATTACTGAAAAGTCATTAAATAGAAGTTACTTACATTATAACAAAATAGGAATAATCTATAGTATTAATATAAGCACATATGATGAATCTCGAGCATTCTAACGCATAACTGCACTAATTCTCTTGACTTTCAATGTGCTCCTTATCACAATCAAGCTACTGAAGCAATATGATTTTACAAATCAATAAACTGGTAATCAAATCAAGTAAGCCAAAAGAAGTTACTGTTGATGACATGGCAGTTAATGTGATGATGGGACAATGATACAACAGTTGATTGGGGTGGTGTGTGACAAACTGTCAAGATAGTGAGATGGCAGTGATTTGATGGTGATGTGTTGTTGGATGATGATGTAGAGCAAACTGGATAGTGATAGATCATTGGACATTGATATAGTACTGAATGGATAGTGTTGCTACATGACGACAGAAAAATGACTTGACATACAAACCGTTAACTTGATTAGCAAACATGTATATACTGCTGAATTGACAGGTTTGTTTGGAGCACCAATTTGATAGGTCAATTGACACAGACTATCAGATAAATCTCTTGAGAAAGATGAGCTGTGATGTCAAAGACAGGTTGAAATAGTAGCTGGAATAGTGGACGATGGTGTCGAACGGTCATCAGGAAAGAAGAGTGTTCACACTTGAACGATCAAAAGAAAGATGCCAGCCTGGTAAAATTATGAGGGCAAAAAAAGAAATATTTGAAGTGCATGCGGCATAAGGCTTCCCACCACTAAACTACTAGGTTTTTAACAAGAGATGCTGATACCATGTGAAATAGAGAAAATAAGCAAAAATATTCTATTGCAATTTGGTTATAGGCAATATACAGGAAGCTCCTTGTATAGAAGTTTAGGCTATAGAGAAAAAAGGTAAGTGGAAACAATAGGATATAGAAGTTTAGGCTAATAGAGAAGAAGGTAAGTGGTAACTATAGGAATTAATGGAAATAAGTATAATGGAGAGATATCTAAATAACGAGATTCCTAATTATAACAGTAGAAAGAAGAGTATGGCATTCCATGCAGCCTAGTGTGGCAGTGCATTGGCCTTTCCCTAGACATGTCACTGGGCTTTGGTCTTGTACTTGACACCCCAAGAAACTTCTAGTTGTGACATATTGTCATTTTCTGTGCTATTAACCTTAAGTCATTAGGATGAATCTATAAAAGAACTTTTTAATTATAACTGCTCCAAATCTATTGGCTTTTAACATTTATTCTCCCTTTCTTTTTTGTCCAATCAGCACATTAAGATCAGAAAGTTGGGATAACCATCTTAAGACTCTTCTTCTATGTTGCAGGTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAA</genome_strand>
        <mrna_strand>CACTTTCGCCGGAACTGCTGCTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTCGATCTGGTGGGGAAGTCTCTGACTCATGTATTATTGTTTGATGATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235297" ref_strand="+" ref_description="SGN-E235297 [cLED-11-C2]">
      <seq>cactttcgccggaactgctgcttctggtgtacttgtttcgttgctaagaattttaaccaaagctgtatatccacaagatgctaatgggctgagaaagagtgcaaacctttattttattttcagcattgctgtgatgattctgtgcatagtcttttacaatattgcacataggcttccaataattaagtactacaatgatcttaaaactcaggcagtgaacgaggagaaagaggataagggcgacttaactccagaattatggagatcaactctggacatttttgggactgtgaaatggtatggttttggcattgtcagtctttatgtggtcaccttgtctatatttcccggatatatcacagaagacgtgcattctcaacttctgaaggattggtatccgatcttgttgattactggctacaatgtgtttgatctggtgggggagtctctgactcctggattattttttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="98522" stop="102255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98822" g_stop="98847" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101506" g_stop="101955" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="476" r_length="450" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E235297" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98822" e_stop="98847"/>
          <exon e_start="101506" e_stop="101955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCGCCGGAACTGCTGCTTCTGGTATTGAAAGTTCCTCATTTTGCGCTTTGATTTTCAGTATTTGACCTAGAATGTCGCTTTTCTGTGGTTAATTTGAGTCTGATGTTGATGATAATAGGATCTGATCTATGTGTTGAAATGCACTTGACCTGAAATGACTGATGATTCATATAGTGATCTAAGTTATTGGAATGAAATTGGCCTGAATTGATTGATGATTCATATAGTGATCTAAGTTTTTATATTTTAGAATTGAGGTTTGGTTGATATGAAAGTTATAGTTGATGCAACTCAATTTCATGTTTTGGTATGAAGGCTTAGTTGATATTAAAGTTATAGTTGATGCAACTCAATTTCATCTAGAACGTTTATTACTCTAGGTTGCTTCATTTGCTTTGTGTCTTGCTATTTTGCTGTCATATTTTTCTTGCAACATGTTCTGTATATTTATCATTTGAGACGAGGGTCTATTGGTAGCAATCTTTGGATTAAGGTTTATGTATACCCTACACTCCTCATACCAAACTTGTGGGATTACACTGGGTATGTTGTTTGTTCATATAAGAACTGCAGTAGATATTACCATTTTCAAAAAAAAAAATTTAGAGCTGCACTAGATATTCAAACAGCTGTTCAGGGGAAGTATCTGCGTATGAGTCAATGCGGTGGCTTCACTGGTTTTGCTAATTAACTTTGTTTCCTCATCTGTTTAGAATTTGGGGAACTTCAACATCTTCTTCTCCTGGAATGTTTCTATCTGCTTTAACTGTCGCAACTTGTATTTCTAATTGTCCATCCTGTTACCTTGTCTTGCGGATAATCTCTATTCACTCATTTACTAATGGAATAGGATAATTCAATTGAATGAAATCTCATCGTCCCATATTATCATTACCATAGATTGAGATTTAGTTAAATCTGTAATGTAGCTTATGAAGTGTTCTATCAAGGCATTATGTAGTCTGTCTCAATGATCTGATTCCATTTGTTCGTCAATGTGGTTGATATAGATTGAATTCTTTTCACGACTTTATAAAGGAAAAGTTGCTTTAACTATTTAGTTTTTGAATATATTGCTGCTCTTCATGATGGAAGATAGTATGTAATGGAACAAAACATAATGCTAACTATTATTCTGAAAATATTATTTCTTGTTGGGCACCTCTGTGCTCCTTCCTGTAGCGATGTCACATGGGATGATATTGCATGTAATGTCTTTTGAGTTCCAATATCAAATTTTTAGTATTAAAAGAGAGAACATTTTACTATTGGCTATGAAGAACATGCAAGATTTTCCTTATGTAGGTGCTTAAGTACTCTAGATTAAGGAGGTTTGGATTACTAGAAATAAGGTAGGTTTTTGGATTACTGAAAAGTCATTAAATAGAAGTTACTTACATTATAACAAAATAGGAATAATCTATAGTATTAATATAAGCACATATGATGAATCTCGAGCATTCTAACGCATAACTGCACTAATTCTCTTGACTTTCAATGTGCTCCTTATCACAATCAAGCTACTGAAGCAATATGATTTTACAAATCAATAAACTGGTAATCAAATCAAGTAAGCCAAAAGAAGTTACTGTTGATGACATGGCAGTTAATGTGATGATGGGACAATGATACAACAGTTGATTGGGGTGGTGTGTGACAAACTGTCAAGATAGTGAGATGGCAGTGATTTGATGGTGATGTGTTGTTGGATGATGATGTAGAGCAAACTGGATAGTGATAGATCATTGGACATTGATATAGTACTGAATGGATAGTGTTGCTACATGACGACAGAAAAATGACTTGACATACAAACCGTTAACTTGATTAGCAAACATGTATATACTGCTGAATTGACAGGTTTGTTTGGAGCACCAATTTGATAGGTCAATTGACACAGACTATCAGATAAATCTCTTGAGAAAGATGAGCTGTGATGTCAAAGACAGGTTGAAATAGTAGCTGGAATAGTGGACGATGGTGTCGAACGGTCATCAGGAAAGAAGAGTGTTCACACTTGAACGATCAAAAGAAAGATGCCAGCCTGGTAAAATTATGAGGGCAAAAAAAGAAATATTTGAAGTGCATGCGGCATAAGGCTTCCCACCACTAAACTACTAGGTTTTTAACAAGAGATGCTGATACCATGTGAAATAGAGAAAATAAGCAAAAATATTCTATTGCAATTTGGTTATAGGCAATATACAGGAAGCTCCTTGTATAGAAGTTTAGGCTATAGAGAAAAAAGGTAAGTGGAAACAATAGGATATAGAAGTTTAGGCTAATAGAGAAGAAGGTAAGTGGTAACTATAGGAATTAATGGAAATAAGTATAATGGAGAGATATCTAAATAACGAGATTCCTAATTATAACAGTAGAAAGAAGAGTATGGCATTCCATGCAGCCTAGTGTGGCAGTGCATTGGCCTTTCCCTAGACATGTCACTGGGCTTTGGTCTTGTACTTGACACCCCAAGAAACTTCTAGTTGTGACATATTGTCATTTTCTGTGCTATTAACCTTAAGTCATTAGGATGAATCTATAAAAGAACTTTTTAATTATAACTGCTCCAAATCTATTGGCTTTTAACATTTATTCTCCCTTTCTTTTTTGTCCAATCAGCACATTAAGATCAGAAAGTTGGGATAACCATCTTAAGACTCTTCTTCTATGTTGCAGGTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATG</genome_strand>
        <mrna_strand>CACTTTCGCCGGAACTGCTGCTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGGAGTCTCTGACTCCTGGATTATTTTTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378098" ref_strand="+" ref_description="SGN-E378098 [TUS-21-D24](-)">
      <seq>attatggagatcaactctggacatttttgggactgtgaaatggtatggttttggcattgtcagtctttatgtggtcaccttgtctatatttcccggatatatcacagaagacgtgcattctcaacttctgaaggattggtatccgatcttgttgattactggctacaatgtgtttgatctggtggggaagtctctgactcctgtattattttttgatgatgccaaggttgctattggtgcctgcttcgcaaggttgttgtttttgcctctattctacgtttgcttacatgggcctgaattctttaggacggagcttcctgtcacaatactaacctgtttactgggattgactaacggctacctgactagtttgttaatgatcttgggtccaaaaactgtccaactgcaacacgcagagatagctgggaccttactcgttttgttcttggtgatgggtctggcaattggttccgttgtatcatggttctggattatatagtttctcagcagcttgtaagatatccgttccccgtaaaacctattgctactcaaaaactgtgaaaacttatttattcatgccatttcaaatgtttatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="101435" stop="102632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101735" g_stop="102331" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="614"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E378098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101735" e_stop="102331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGACTAACGGCTACCTGACTAGTTTGTTAATGATCTTGGGTCCAAAAACTGTCCAACTGCAACACGCAGAGATAGCTGGGACCTTACTCGTTTTGTTCTTGGTGATGGGTCTGGCAATTGGTTCCGTTGTATCATGGTTCTGGATTATATAGTTTCTCAGCAGCTTGTAAGATATCCGTTCCCCGTAAAACCTATTGCTACTCAAAAACTGTGAAAACTTATTTATTCATGCCATTTCAAATGTTTATTT</genome_strand>
        <mrna_strand>ATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGACTAACGGCTACCTGACTAGTTTGTTAATGATCTTGGGTCCAAAAACTGTCCAACTGCAACACGCAGAGATAGCTGGGACCTTACTCGTTTTGTTCTTGGTGATGGGTCTGGCAATTGGTTCCGTTGTATCATGGTTCTGGATTATATAGTTTCTCAGCAGCTTGTAAGATATCCGTTCCCCGTAAAACCTATTGCTACTCAAAAACTGTGAAAACTTATTTATTCATGCCATTTCAAATGTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541393" ref_strand="+" ref_description="SGN-E541393 [TUS-62-C14]">
      <seq>gaataactgcaaaaacaactgagatgattataatagacttggttgctgaagcagctagaatacgaggatcttccagtaacgatggttcccggggtttgaaggtaaacgaagaatcctccattgaatctcaagtaagcgatattcgtgatattaaagaaaggtgggccttaagaagaagaacatcaaggcatcatcgaagatcatcttcgattgccaagtaattgttgagagtacattccttgttgtatcatatgtactctctattaaagtgtgatatacttttcttttcaatctgttccaaaaagaatatcgtatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="103236" stop="102317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102936" g_stop="102610" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E541393" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102936" e_stop="102610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAACACTTTAAA</genome_strand>
        <mrna_strand>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293283" ref_strand="+" ref_description="SGN-E293283 [cLET-18-M9]">
      <seq>aataactgcaaaaacaactgagatgattataatagacttggttgctgaagcagctagaatacgaggatcttccagtaacgatggttcccggggtttgaaggtaaacgaagaatcctccattgaatctcaagtaagcgatattcgtgatattaaagaaaggtgggccttaagaagaagaacatcaaggcatcatcgaagatcatcttcgattgccaagtaattgttgagagtacattccttgttgtatcatatgtactctctattaaagtgtgatatacttttcttttcaatctgttccaaaaagaatatcgtatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="103235" stop="102317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102935" g_stop="102610" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E293283" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102935" e_stop="102610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAACACTTTAAA</genome_strand>
        <mrna_strand>AATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297600" ref_strand="+" ref_description="SGN-E297600 [cLET-28-F22]">
      <seq>taactgcaaagacaacttatatgattataatagacttggttgctgaagcagctagaatacgaggatcttccagtaacgatggttcccggggtttgaaggtaaacgaagaatcctccattgaatctcaagtaagcgatattcgtgatattaaagaaaggtgggccttaagaagaagaacatcaaggcatcatcgaagatcatcttcgattgccaagtaattgttgagagtacattccttgttgtatcatatgtactctctattaaagtgtgatatacttttcttttcaatctgttccaaaaagaatatcgtatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="103233" stop="102317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102933" g_stop="102610" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E297600" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102933" e_stop="102610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAACACTTTAAA</genome_strand>
        <mrna_strand>TAACTGCAAAGACAACTTATATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541390" ref_strand="+" ref_description="SGN-E541390 [TUS-62-C14](-)">
      <seq>gaataactgcaaaaacaactgagatgattataatagacttggttgctgaagcagctagaatacgaggatcttccagtaacgatggttcccggggtttgaaggtaaacgaagaatcctccattgaatctcaagtaagcgatattcgtgatattaaagaaaggtgggccttaagaagaagaacatcaaggcatcatcgaagatcatcttcgattgccaagtaattgttgagagtacattccttgttgtatcatatgtactctctattaaagtgtgatatacttttcttttcaatctgttccaaaaagaatatcgtatcaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="103236" stop="102317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102936" g_stop="102619" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="336"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E541390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102936" e_stop="102619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAA</genome_strand>
        <mrna_strand>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327641" ref_strand="+" ref_description="SGN-E327641 [cTOC-20-D4]">
      <seq>gtaaaatgaacttcttcatataacaaactcaaaaaacggaacgccactcaaattaacaatcaaaatgcacaaattctcagcaatttctcaacttgttaagctttggatttgaagtattttttaggttctgattagttcaatgaagacggagggtcagggaatagaaatactggagaacacgagcaatgtacataatagattgcctcgtccaatgatccagtctattttctcaggattccaggaaaaggtccaagagtgtgttaagtcaaatttcaaaagattgaaaatcgctcatgataaatcaatcacgagaggtaataacaaaggagcaactttagtcatagatgtggataaagagaagcaattacaatcttggaaagagaacccgagttgggttgatcccccgccatatgtaaaggtaagtgtacccaaaggttctctttgtaacctgaatgtgaaagttaatattggactccccccagataccgtgtttgacattgtaaccgaccctgaaaatagacgagtcttcaagaatatcaaggaagtattatcgcggaaggtgttggttgatgaaggttcaaggcaagtagtggaactagaccaagccgctatatggaaatttctttggtggtcaggaaacatatctngtcatgtattagtcgaccaaaacagagagactacacgatgaagttcaagcaagtgaaaactggattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="107495" stop="102835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107195" g_stop="107072" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107071" i_stop="105499" i_length="1573">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105498" g_stop="105358" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="265" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105271" g_stop="105119" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="418" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104693" g_stop="104571" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="541" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104570" i_stop="104410" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104409" g_stop="104266" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="684" r_length="143" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104265" i_stop="103166" i_length="1100">
            <donor d_prob="0.891" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103165" g_stop="103135" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="715" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E327641" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107195" e_stop="107072"/>
          <exon e_start="105498" e_stop="105358"/>
          <exon e_start="105271" e_stop="105119"/>
          <exon e_start="104693" e_stop="104571"/>
          <exon e_start="104409" e_stop="104266"/>
          <exon e_start="103165" e_stop="103135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGAACTTCTTCATATAACAAACTCAAAAAACGGAACGCCACTCAAATTAACAATCAAAATGCACAAATTCTCAGCAATTTCTCAACTTGTTAAGCTTTGGATTTGAAGTATTTTTTAGGTAAATCTGTTCTTCCTATCCCTTTTGTTGATATTTTGAGCTCCTAATTACCTGTTTTGTTGCTTGTAATTTGTACTCAAAATTAGCGATCTGAATTCATAATCCAGGTGATTTGTTGCTGGATGTTTGATTTACTATCTAAATTTTTTAGTTTCAGCTCAAGCTATTAGTGGATCCAATTTTTTCTCATTTTTATTTTGAATTTTTGTGGTTACTGTAGTTCATTTTGATGAAATTTCATGTATTGATCTGAATTCAAATAGGTTTAACGGTGTTTCTGTGCTGTTGGAATAGCGTGTTTGGCCAAACTTTTAGAAAGCTGAGAAGTGTAGTTATTTTGGAGAATTGATGTGTTTAATCAAACTTTTTGAAGAAGAAAAAGTGTTTTTAAGTTGTAGCGGAAACTGATTTTTTAGGAATTTTTCTTAAGAAAGTTGAGGTGTTTGGCCAAACTTCTAGGAAGCCAATGTGTTTTTATAAATATTAGGTAAAAATTGCTTATTTTAGAGAATTCAAGTAAGTAGTAGAAACTGCTCTTTAGAGAAAAAAATGTGTTTGGCCAATGGATTTGGCCAAATTTTAGAGAAAAAAGAAGTGTTTTTAAGTAGCAGAACTGCTTTCTAAGAGTTTTGTTTTTTGAAGTAAGTTGAGGTGTTTGGCCAAACTTCTGGTAAGCCAAAAAGTGTTTCTGAGTAGCAACATAAGCTGTTTTTTTCAAGAGTTTGCTTTAGAAATTTGAGTTGTTTGGCCAAAGTTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGAGTACGTTATAACTTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTCAATATGGAATACAACAGTATTCATATAGCCGACCCCAACTTGTTTGGGTCTGAGGGGGTTATTGTATGGAATACAAATTTTATCCGTTTGCTCTGTTTTAGAAAGTGTTGATTCCAAAAGCTTTGGTTTTTCCAACTCCAAAATGGAAATAAGGAATCTGTGAAAGAATGCATCTCTTTGATATGGTAAATCTGTCTCAAGATTGAGTACGTTATAACCTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTTCAATATGGAATACAACTTTAATGGAAAAAACAGGATTCATATAGCCGACCCCAACTTGTTTGGTACTGAGGGTGTTATTGTATGGAATACCGCTTCCTCTGTTTTAGAAAGTGTTGATTCCAACGTTTGAGTTTTTCCAACTCCAGAATGGAACTCAGAAGTTTGTGGAAGAATGTTTCTTGTGTCAATGTGGTGCATCTGTCGAGATTGAGTACAATATAAACGTGTTTCCTTCTTTTGGAAATTTCGTGGTTTGATATTTATTTCAATCCCATAAGCATTCTGTTGCATATGATGATACACAAATGTTGGATAAACTAATATTGCAATTATGTAGGTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAGGTTTGTTCCTCCCTCTTCAATATGTTTTTTGACGTATATATGATCTATATATATTCTTTTTCTCCAAATTTTCTTCGTTGCTGCAGTCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAGGTAATACAGTTGTGAAATTATTTGTAGGATGTAAACTTCCTATCGCCAAACTTTACAGTAAATGGACTGCTGAAGCTATTTCCTCATAGCACTTAATCAGGATATAACCTCCTAGTTCCCTGTGCTATATCTAAAAAGGATGATTTCAACGTTATGTTGATTAGTGCATGTTGCTCTTGTGCACGAGCCTTGTTTATCTTCTCTTGATAAACTTTTTTCAGATATTCCGAAGGGTACTTGTTCAGTTTTACCAAACAAGGAAGTAAGGAGGATCATAACAGATCGATTTTTTCAAAGTTCATGTTTTTTTTTTTTTTTGAGGAGTCAGATGTGACCATCGCATGTGTTGTACTTACTAGAGCTTAGTTATGTTGTTTGATTTTGTTATGAGACTTTATGACTTGGTGAGCTTTAAATCCTTGCAGGTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAGGTAAGATATCTCATGACTATGTTAAAATACCTTGTCTCATCACAATCTTTTCAACAGAAGGTGTAAAATTTCTTTCTGTTTATACCTCATATGTTACGCCCTTTTTTTTATTTGCCTTTTCACTTCTAAATATGATCTGAAGTTTCTGCATATAATTTCAGGAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTGGTCAGGAACAATATCTGTTCATGTATTAGTCGACCAAAACAGAGAAGACTACACGGTAATGACTAACCAGATCACTGATTTATTGCTGGTTTTTTACATGTTAGACTACACCAACACTGCCTGTTTCTTATGTTGCATCGTGAATTCGAAGAATAGTATTTGAACTTTGAGTAGTACAGTAAATTTCTGCATTAAGTTTTGATGCTGAAAATAATATTAGGTCTGTGAGCATCATATTTACCTATCTGTTGGACCAACCTGGCAGCTTGCATAAGTGACTACGTGAATTGGAACCATTTGTCTCATCTTGATATATAGTGAACTAGTGTCATCAAAGGCGCGCTTAAGTCCCGAAGCGATGCTCAAAACGTGTTGAGCGCTTCAACCTCACTTTATCTGCGCTTCATTATTGTCATCATGGTTCTAAGGCAAACTTTTTTTTCCTTGCCAATGAGCCTCTTACGAAGAAATGACACTAAACAATTGATATTTCACTTAATCAAAATTTTTAATCAATTTCTTTGGTCATATATTTGTCATTCATATTTATAATTATAGTCTTGAACTAAACATATACATTTGTATTTTTTTTCTCCCTTTGTGCCTCTTTTCATACAAGTCCATATTTTATTTGTGCTTAAAGTCCCCACGAACCTTAGAGCTTTTTTGCATTTTTCGCCTTTGATAACACTGTAACGAACCTATATCCTTGTGCAGCACGAAATTGCTAACTCTTGTATACCAAGGCTTTTGAGGCTTACACCTTCCTATTATTAGACCTAAAAAAAGGCTTTCAGTAGCGTCTTTAGAAGCTAAGCCTTTTGAAACGCTAGTAGTTGTAGCTGTGGCTGTGACCACACCAATCCCGAGTCTACAAGTGATTTGTAAGTAGATTTGAGCCTTTGACTATAAATGCAAGCATAGTTACAGACTGAAAGAAGTGTTGTGGACCGATGCTTTTAGACGAAAGAACTTCTTTGTGCCTCTGAAGATTTGAGCTTTGCGTTTAAGTGCTTCTTTCAAGCAACATCACGGTTCACCATACTTCAGAGTGATCCCAGTTTTTTTACGCGTATATAGCTTCTGTAAACATCAAATGTACCTTATTGTAGCTCTCCTACATACTCTTGACTTGTTTTTTTACGTTGTGTTTAGATGAAGTTCAAGCAAGTGAAAACTGGATTCA</genome_strand>
        <mrna_strand>GTAAAATGAACTTCTTCATATAACAAACTCAAAAAACGGAACGCCACTCAAATTAACAATCAAAATGCACAAATTCTCAGCAATTTCTCAACTTGTTAAGCTTTGGATTTGAAGTATTTTTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG......................................................................................TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAG.................................................................................................................................................................GAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTGGTCAGGAAACATATCTNGTCATGTATTAGTCGACCAAAACAGAG-AGACTACACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTTCAAGCAAGTGAAAACTGGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242724" ref_strand="+" ref_description="SGN-E242724 [cLED-31-I19]">
      <seq>ttttagtttgctcgcggcgttatttgacagagaccagaaagttggctctctttactttaagagcatgttgattccaaaagattttgtttttccaacttcaaaatcgaaagaaggaatccgtgaaagactgcatctcctgttgatatggtgaatttgtctcaagattgagttctgattagttcaatgaagacggagggtcagggaatagaaatactggagaacacgagcaatgtacataatagattgcctcgtccaatgatccagtctattttctcaggattccaggaaaaggtccaagagtgtgttaagtcaaatttcaaaagattgaaaatcgctcatgataaatcaatcacgagaggtaataacaaaggagcaactttagtcatagatgtggataaagagaagcaattacaatcttggaaagagaacccgagttgggttgatcccccgccatatgtaaaggtaagtgtacccaaaggttctctttgtaacctgaatgtgaaagttaatattggactccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="106617" stop="104333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106317" g_stop="106150" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106149" i_stop="105499" i_length="651">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105498" g_stop="105358" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="309" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105271" g_stop="105119" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="462" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104693" g_stop="104633" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="523" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E242724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106317" e_stop="106150"/>
          <exon e_start="105498" e_stop="105358"/>
          <exon e_start="105271" e_stop="105119"/>
          <exon e_start="104693" e_stop="104633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGAGTACGTTATAACTTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTCAATATGGAATACAACAGTATTCATATAGCCGACCCCAACTTGTTTGGGTCTGAGGGGGTTATTGTATGGAATACAAATTTTATCCGTTTGCTCTGTTTTAGAAAGTGTTGATTCCAAAAGCTTTGGTTTTTCCAACTCCAAAATGGAAATAAGGAATCTGTGAAAGAATGCATCTCTTTGATATGGTAAATCTGTCTCAAGATTGAGTACGTTATAACCTGCTTTCTTCTTTTAGGAATTGTATGGTTTGATATTGATTTCAATATGGAATACAACTTTAATGGAAAAAACAGGATTCATATAGCCGACCCCAACTTGTTTGGTACTGAGGGTGTTATTGTATGGAATACCGCTTCCTCTGTTTTAGAAAGTGTTGATTCCAACGTTTGAGTTTTTCCAACTCCAGAATGGAACTCAGAAGTTTGTGGAAGAATGTTTCTTGTGTCAATGTGGTGCATCTGTCGAGATTGAGTACAATATAAACGTGTTTCCTTCTTTTGGAAATTTCGTGGTTTGATATTTATTTCAATCCCATAAGCATTCTGTTGCATATGATGATACACAAATGTTGGATAAACTAATATTGCAATTATGTAGGTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAGGTTTGTTCCTCCCTCTTCAATATGTTTTTTGACGTATATATGATCTATATATATTCTTTTTCTCCAAATTTTCTTCGTTGCTGCAGTCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAGGTAATACAGTTGTGAAATTATTTGTAGGATGTAAACTTCCTATCGCCAAACTTTACAGTAAATGGACTGCTGAAGCTATTTCCTCATAGCACTTAATCAGGATATAACCTCCTAGTTCCCTGTGCTATATCTAAAAAGGATGATTTCAACGTTATGTTGATTAGTGCATGTTGCTCTTGTGCACGAGCCTTGTTTATCTTCTCTTGATAAACTTTTTTCAGATATTCCGAAGGGTACTTGTTCAGTTTTACCAAACAAGGAAGTAAGGAGGATCATAACAGATCGATTTTTTCAAAGTTCATGTTTTTTTTTTTTTTTGAGGAGTCAGATGTGACCATCGCATGTGTTGTACTTACTAGAGCTTAGTTATGTTGTTTGATTTTGTTATGAGACTTTATGACTTGGTGAGCTTTAAATCCTTGCAGGTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCC</genome_strand>
        <mrna_strand>TTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG......................................................................................TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545189" ref_strand="+" ref_description="SGN-E545189 [TUS-67-O14](-)">
      <seq>atgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttaaaatgcatatcaaataccataatataaaaactactgtggtataaaaatttaaaaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110798" stop="63769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110498" g_stop="110434" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="185" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="304" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="386" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108701" g_stop="108396" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="691" r_length="305" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108395" i_stop="107665" i_length="731">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.203" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107664" g_stop="107631" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="725" r_length="34" r_score="0.471"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E545189" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110498" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108396"/>
          <exon e_start="107664" e_stop="107631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTCATTTCAACTCATTGCCAGACTCTTCTTTGTGAACTGAGTAAGAACAGGGTATATGTTGTCAAATGCAGCATATAGGTCATCTCTAACCTTGGCTCCAGTGATAACAATTTTCCCAGAAGCAAAAACCAGCAGCACAATTTTCGGTTTCTTCATACGATACACCAAACCAGGAAATATTTCTGGTTCATAACTTGAGAAACTACTGTGAGCCATGGCAAGTCCTTCAAGTCGAATAGGAAATCTAACATCACAACTAGCAACAATATTCTGGATTTTGAAATCCTTAAACTTAAACTCCAGGATAACCTAGCTTTTGTACAATTCTAGCGTATTCTCGCGCTGCTAACTTCGAATCGTTCCTGTACAAACAATTTTCCCAGTAGCAAAGATCAATGCTGTGGTTTTTGGTTCTCTAATTCTCATGATCTCTGCAGGTAAACGTCTCGGATTGTACTCTGCGTTTCGAGCTTTAAGTGCAATGGCTTTGAGGTCTAACTTACCGCAGTTTAGAGACAACGAACTAAAGACTAAAGTCAACTAATGCTTAAGACATCCAAGTTCGACATTCTGGAGAGTAGGGATTATTGCAGAAGAATGATCCGCCATTGTTGTTCTTCTTCAATTGCAGAAGAAAGAGAAACAGAGTAAAGCGGAAATAAATAAAAACTGAATGAAATCGACAATAACCAAATTGATGGTTATTTTTTTCGTTTGGTTTGGTTTGGTTTTAGAAATTCAAAAAATCGACTAAATTGATTTGGTTTT</genome_strand>
        <mrna_strand>ATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTA-TAAAAATTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAGAAAAAAAAAAACTCGAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545146" ref_strand="+" ref_description="SGN-E545146 [TUS-67-N13](-)">
      <seq>aaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggagggtcacttttgaaancgtttttgtaataccaatggttgaantgtatgtaatttgctgatntaaacttntattaacttgtaacanaatactagctcttttctnggttattttgcagtcanatttaaanatgcatatcaanatacccataatataaaaactacgtgtggtattaaaaatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110792" stop="1687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110492" g_stop="110434" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="179" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="298" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="380" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108701" g_stop="108396" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="699" r_length="319" r_score="0.912"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108395" i_stop="107665" i_length="731">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.203" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107664" g_stop="107653" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="711" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E545146" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110492" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108396"/>
          <exon e_start="107664" e_stop="107653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGA-GGTCACTTTTGAAA-CGTTTTTGTAATA-CAATGGTTGAA-TGTATGTAATTTGCTGAT-TAAACTT-TATTAACTTGTAACA-AATACTAGCTCTTTTCT-GGTTATTTTGCAGTCA-ATTTAAA-ATGCATATCAA-ATA-CCATAATATAAAAACTAC-TGTGGTATTAAAAATTTCATTTCAACTCATTGCCAGACTCTTCTTTGTGAACTGAGTAAGAACAGGGTATATGTTGTCAAATGCAGCATATAGGTCATCTCTAACCTTGGCTCCAGTGATAACAATTTTCCCAGAAGCAAAAACCAGCAGCACAATTTTCGGTTTCTTCATACGATACACCAAACCAGGAAATATTTCTGGTTCATAACTTGAGAAACTACTGTGAGCCATGGCAAGTCCTTCAAGTCGAATAGGAAATCTAACATCACAACTAGCAACAATATTCTGGATTTTGAAATCCTTAAACTTAAACTCCAGGATAACCTAGCTTTTGTACAATTCTAGCGTATTCTCGCGCTGCTAACTTCGAATCGTTCCTGTACAAACAATTTTCCCAGTAGCAAAGATCAATGCTGTGGTTTTTGGTTCTCTAATTCTCATGATCTCTGCAGGTAAACGTCTCGGATTGTACTCTGCGTTTCGAGCTTTAAGTGCAATGGCTTTGAGGTCTAACTTACCGCAGTTTAGAGACAACGAACTAAAGACTAAAGTCAACTAATGCTTAAGACATCCAAGTTCGACATTCTGGAGAGTAGGGATTATTGCAGAAGAATGATCCGCCATTGTTGTTCTTCTTCAATTGCAGAAGAAAGAGAAACAGAGTAAAGCGGAAATAAATAAAAACTGAATGAAATCGACAATAACCAAATTGATGGTTATTTTTTTCGTTTGGTTTGGTTTGGTTTTAGAAATTCAAAAAA</genome_strand>
        <mrna_strand>AAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGGTCACTTTTGAAANCGTTTTTGTAATACCAATGGTTGAANTGTATGTAATTTGCTGATNTAAACTTNTATTAACTTGTAACANAATACTAGCTCTTTTCTNGGTTATTTTGCAGTCANATTTAAANATGCATATCAANATACCCATAATATAAAAACTACGTGTGGTATTAAAAATTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243154" ref_strand="+" ref_description="SGN-E243154 [cLEE-2-M14]">
      <seq>aatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaagaagtcacttttgaaacgtttttgtaatacaatgggtgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaataaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109305" stop="51147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109005" g_stop="108946" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="142" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108500" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="344" r_length="202" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108499" i_stop="107768" i_length="732">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107767" g_stop="107706" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="406" r_length="62" r_score="0.613"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E243154" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109005" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108500"/>
          <exon e_start="107767" e_stop="107706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTCATTTCAACTCATTGCCAGACTCTTCTTTGTGAACTGAGTAAGAACAGGGTATATGTTGTCAAATGCAGCATATAGGTCATCTCTAACCTTGGCTCCAGTGATAACAATTTTCCCAGAAGCAAAAACCAGCAGCACAATTTTCGGTTTCTTCATACGATACACCAAACCAGGAAATATTTCTGGTTCATAACTTGAGAAACTACTGTGAGCCATGGCAAGTCCTTCAAGTCGAATAGGAAATCTAACATCACAACTAGCAACAATATTCTGGATTTTGAAATCCTTAAACTTAAACTCCAGGATAACCTAGCTTTTGTACAATTCTAGCGTATTCTCGCGCTGCTAACTTCGAATCGTTCCTGTACAAACAATTTTCCCAGTAGCAAAGATCAATGCTGTGGTTTTTGGTTCTCTAATTCTCATGATCTCTGCAGGTAAACGTCTCGGATTGTACTCTGCGTTTCGAGCTTTAAGTGCAATGGCTTTGAGGTCTAACTTACCGCAGTTTAGAGACAACGAACTAAAGACTAAAGTCAACTAATGCTTAAGACATCCAAGTTCGACATTCTGGAGAGTAGGGATTATTGCAGAAGAATGATCCGCCATTGTTGTTCTTCTTCAATTGCAGAAGAAAGAGAAACAGAGTAAAGCGGAAATAAATAAAAACTGAATGAAATCGACAATAACCAA</genome_strand>
        <mrna_strand>AATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAAGAAGTCACTTTTGAAACGTTTTTGTAATACAATGGGTGAATGTATGTAATTTGCTGATTAAACTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308784" ref_strand="+" ref_description="SGN-E308784 [cLEZ-14-D15]">
      <seq>tcgaggatgcactgaatgctcctgaggggaccgtcaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcaggcaatttaaaatgcatatcaaataccataatataaaaactactgtggtattaaaaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109286" stop="108095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109015" g_stop="108946" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="152" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108387" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="467" r_length="315" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E308784" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109015" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTCATTTCAACT</genome_strand>
        <mrna_strand>TCGAGGATGCACTGAATGCTCCTGAGGGGACCGTCAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGGCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310635" ref_strand="+" ref_description="SGN-E310635 [cLEZ-19-C18]">
      <seq>tgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtaactggtacatgcaaagcacttgtgcaacttctggacagggactctatgagggtctcgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattaatactggatgcaggcgggtttttatctagttccatctacttttattacgtctttcttctttcagacattctctgaatctgtgtggctatggcatttgcttcttaggaggtcacttttgaaacgatattgtaatacaatggctgaatgtctgtaatatgctgattaaactttattaacttgtaacaaatactagctcttttgtggttattttgcagacaatttaaaatgcatatcaaataccataatataaaaactactgtggcattaaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109308" stop="108097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109008" g_stop="108946" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="145" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108396" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="451" r_length="306" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E310635" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109008" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTC</genome_strand>
        <mrna_strand>TGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTAACTG.................................................................................GTACATGCAAAGCACTTGTGCAACTTCTGGACAGGGACTCTATGAGGGTCTCGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTAATACTGGATGCAGGCGGGTTTTTATCTAGTTCCATCTACTTTTATTACGTCTTTCTTCTTTCAGACATTCTCTGAATCTGTGTGGCTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGATATTGTAATACAATGGCTGAATGTCTGTAATATGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTGTGGTTATTTTGCAGACAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGCATTAAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701864" ref_strand="+" ref_description="SGN-E701864 [FA17AF05]">
      <seq>ctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttannatgcatatcaaataccataatataaaaactactgtggtattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112711" stop="108103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112411" g_stop="112364" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111533" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="168" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111532" i_stop="111382" i_length="151">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.190" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111381" g_stop="111370" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="179" r_length="11" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111369" i_stop="110505" i_length="865">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="250" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="370" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="489" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="571" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108701" g_stop="108403" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="870" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E701864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112411" e_stop="112364"/>
          <exon e_start="111652" e_stop="111533"/>
          <exon e_start="111381" e_stop="111370"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAA</genome_strand>
        <mrna_strand>CTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCAT.......................................................................................................................................................-TCCAACTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTANNATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349549" ref_strand="+" ref_description="SGN-E349549 [cTOS-1-O12]">
      <seq>ggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttaaaatgcatatcaaataccataatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110563" stop="108118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110263" g_stop="110157" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="226" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="308" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108413" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="597" r_length="289" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E349549" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110263" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACT</genome_strand>
        <mrna_strand>GGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244097" ref_strand="+" ref_description="SGN-E244097 [cLEE-1-E1]">
      <seq>gagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttaaaatgcatatcaaataccataatataaaaactnannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109361" stop="108116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109061" g_stop="108946" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="198" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108413" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="487" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="511"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E244097" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109061" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACT</genome_strand>
        <mrna_strand>GAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336644" ref_strand="+" ref_description="SGN-E336644 [cTOE-4-N5]">
      <seq>tggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttaaaatgcatatcaaataccataatataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109275" stop="108118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108975" g_stop="108946" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="112" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108415" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="399" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E336644" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108975" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTA</genome_strand>
        <mrna_strand>TGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713378" ref_strand="+" ref_description="SGN-E713378 [FB08BH06]">
      <seq>agcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattanactttattaacttgtaacaaatactagctcttttctggttattttgcagtcaatttaaaatgcatatcaaataccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111911" stop="108126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111611" g_stop="111483" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="200" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="320" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="439" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="521" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108426" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="797" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E713378" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111611" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAA</genome_strand>
        <mrna_strand>AGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTANACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709492" ref_strand="+" ref_description="SGN-E709492 [FA52AH02]">
      <seq>cgcttaagctctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgaaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112732" stop="108160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112440" g_stop="112364" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="247" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="318" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="438" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="557" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="639" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108460" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="881" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E709492" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112440" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTT</genome_strand>
        <mrna_strand>CGCTTAAGCTCTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGAAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746649" ref_strand="+" ref_description="SGN-E746649 [GI|47104101]">
      <seq>caattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaacaaatactagctcttttctggttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112716" stop="108164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112416" g_stop="112364" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="223" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="294" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="414" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="533" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="615" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108465" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="852" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="853" polyA_stop="871"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E746649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112416" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTT</genome_strand>
        <mrna_strand>CAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218185" ref_strand="+" ref_description="SGN-E218185 [cLEL-23-P16](-)">
      <seq>gtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttctgaaacgtttttgtaatacaatggttgaatgtatgtaatatgcagattatccataattaacttgtaacaaatactagctcttttctggttcaacaaaaaaataaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109346" stop="108165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109046" g_stop="108946" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="183" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108465" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="420" r_length="237" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E218185" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109046" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTT</genome_strand>
        <mrna_strand>GTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTCTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATATGCAGATTATCCATAATTAACTTGTAACAAATACTAGCTCTTTTCTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283200" ref_strand="-" ref_description="SGN-E283200 [cLER-17-P17]">
      <seq>tcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110533" stop="3870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110233" g_stop="110157" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="196" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="278" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108469" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="513" r_length="235" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E283200" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283200" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110233" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAG-CTCT-TTTCT</genome_strand>
        <mrna_strand>TCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252100" ref_strand="-" ref_description="SGN-E252100 [cLEG-8-E13]">
      <seq>ctcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110542" stop="3871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110242" g_stop="110157" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="205" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="287" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108478" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="510" r_length="223" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E252100" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252100" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110242" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAG</genome_strand>
        <mrna_strand>CTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTA-AAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288998" ref_strand="-" ref_description="SGN-E288998 [cLES-17-L7]">
      <seq>tgattggctttctaacaacatcgccaataaggcttaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109113" stop="3868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108813" g_stop="108783" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108701" g_stop="108478" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="255" r_length="224" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E288998" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288998" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108813" e_stop="108783"/>
          <exon e_start="108701" e_stop="108478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAG</genome_strand>
        <mrna_strand>TGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCTTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAAAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542448" ref_strand="+" ref_description="SGN-E542448 [TUS-63-M6](-)">
      <seq>aaaagggaagtattaattctgattaatgatttattttctctgctctgtgtagcaaaagcctagtgttactgaagattttatcttgtattgtctgcctgttatcagtttaataagatgttgataacatagctcctaagatgagctatcaataataattgataaatttcaggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110973" stop="108182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110673" g_stop="110434" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="360" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="479" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="561" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108701" g_stop="108481" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="782" r_length="221" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E542448" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110673" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATAC</genome_strand>
        <mrna_strand>AAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286846" ref_strand="-" ref_description="SGN-E286846 [cLES-14-J17]">
      <seq>gtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110572" stop="3870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110272" g_stop="110157" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="235" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="317" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108482" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="537" r_length="220" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E286846" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286846" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110272" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATA</genome_strand>
        <mrna_strand>GTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356944" ref_strand="+" ref_description="SGN-E356944 [cTOS-22-D20]">
      <seq>gaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110562" stop="3871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110262" g_stop="110157" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="225" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="307" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108483" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="526" r_length="219" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E356944" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110262" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAAT</genome_strand>
        <mrna_strand>GAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356562" ref_strand="+" ref_description="SGN-E356562 [cTOS-21-I20]">
      <seq>ggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110560" stop="3871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110260" g_stop="110157" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="223" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="305" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108483" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="524" r_length="219" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E356562" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110260" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAAT</genome_strand>
        <mrna_strand>GGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553523" ref_strand="+" ref_description="SGN-E553523 [cTSC-1-G12]">
      <seq>gctttctctcactatatccctctttgcccaagcgtgttcttcacggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactctatgcagctggtaagaccaccatattgtacaagctcaaactgggagaaatcgtcaccaccattccaactataggtttcaatgtggaaactgttgaatacaacaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcaaggtcacatttttgtggttgataccaatgaccgataccgtgtacgggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaatgatcttcctaatgcaatgaatgctgctgaagaaaccgaacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgaaggtcttgattggctttctaacaacatcgccgataaggcctaagtcgaaatagagttgttgcggattcatccaggatgcaggcgggtttttatctacttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttcgctgattaaactttattaacttgtaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112706" stop="108182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112406" g_stop="112364" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="214" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="285" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="405" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="526" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="608" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108485" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="826" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="827" polyA_stop="842"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E553523" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112406" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGC-TGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAA-GATCTTCCTAATGCAATGAATGCTGCTGAAATAACCG-ACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTT-GCTGATTAAACTTTATTAACTTGTAACAA</genome_strand>
        <mrna_strand>GCTTTCTCTCACTATATCCCTCTTTGCCCAAGCGTGTTCTTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCTATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAACTGGGAGAAATCGTCACCACCATTCCAACTATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAACAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAAGGTCACATTTTTGTGGTTGATACCAATGACCGATACCGTGTACGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAATGATCTTCCTAATGCAATGAATGCTGCTGAAGAAACCGAACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAAGGTCTTGATTGGCTTTCTAACAACATCGCCGATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCAGGATGCAGGCGGGTTTTTATCTACTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTCGCTGATTAAACTTTATTAACTTGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286123" ref_strand="-" ref_description="SGN-E286123 [cLES-13-J23]">
      <seq>ggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttattaacttgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109365" stop="108182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109065" g_stop="108946" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="202" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108485" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="419" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="435"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E286123" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286123" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109065" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAA</genome_strand>
        <mrna_strand>GGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224013" ref_strand="+" ref_description="SGN-E224013 [cLEL-19-A22](-)">
      <seq>aactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctaaatctgtgtggttatggcatttgcttcttagaaaggtcacttttaaaacgttttttgtaatacaatggttgaatgtatgtaatttactgattaaactttattaacttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109128" stop="108182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108829" g_stop="108783" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108701" g_stop="108485" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="266" r_length="219" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="267" polyA_stop="278"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E224013" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108829" e_stop="108783"/>
          <exon e_start="108701" e_stop="108485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAG-GAGGTCACTTTTGAAACG-TTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAA</genome_strand>
        <mrna_strand>AACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTAAATCTGTGTGGTTATGGCATTTGCTTCTTAGAAAGGTCACTTTTAAAACGTTTTTTGTAATACAATGGTTGAATGTATGTAATTTACTGATTAAACTTTATTAACTTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363945" ref_strand="+" ref_description="SGN-E363945 [cLPP-16-I17]">
      <seq>acaacatcggcaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcactttcgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattgttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109006" stop="3875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108799" g_stop="108783" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108701" g_stop="108486" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="231" r_length="214" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E363945" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108799" e_stop="108783"/>
          <exon e_start="108701" e_stop="108486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACA</genome_strand>
        <mrna_strand>ACAACATCGGCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTCGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATT--GTTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691427" ref_strand="+" ref_description="SGN-E691427 [LH_Ea06B09]">
      <seq>cccttatcgtgccgaattcggcacgaggaagctctctctctcccttaattctcgtgctttctctcactagatccctctttgtccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaaatctgtgtggttatggcatttgcttcttaagaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112730" stop="108195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112430" g_stop="112364" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="98" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="268" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="339" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="459" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="578" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="660" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108489" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="874" r_length="214" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E691427" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112430" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTG-AATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTA</genome_strand>
        <mrna_strand>CTCTCTCTCTCCCTTAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGTCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAAATCTGTGTGGTTATGGCATTTGCTTCTTAAGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345626" ref_strand="+" ref_description="SGN-E345626 [cTOF-18-E2]">
      <seq>agagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110507" stop="108195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110207" g_stop="110157" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="170" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="252" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108489" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="465" r_length="213" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E345626" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110207" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTA</genome_strand>
        <mrna_strand>AGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347841" ref_strand="+" ref_description="SGN-E347841 [cTOF-26-N2]">
      <seq>caacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109144" stop="108195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108844" g_stop="108783" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108701" g_stop="108490" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="274" r_length="212" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E347841" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108844" e_stop="108783"/>
          <exon e_start="108701" e_stop="108490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGT</genome_strand>
        <mrna_strand>CAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545190" ref_strand="+" ref_description="SGN-E545190 [TUS-67-O14]">
      <seq>gttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagtttcatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgctttctangaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgaataaactttattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111959" stop="108193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="179" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="250" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="370" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="489" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="571" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108493" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="780" r_length="209" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E545190" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTTCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTTCTANGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGAATAAACTTTATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715786" ref_strand="+" ref_description="SGN-E715786 [FB15BA12]">
      <seq>ttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatgtatgtaatttgctgattaaactttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111863" stop="108199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111563" g_stop="111483" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="152" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="272" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="391" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="473" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108497" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="678" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E715786" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111563" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATT</genome_strand>
        <mrna_strand>TTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262220" ref_strand="+" ref_description="SGN-E262220 [cLEG-56-E15]">
      <seq>ctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcgacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcanctttgaaacgtttttgtaatacatgggtgaatgtatgtaatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112701" stop="108211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112401" g_stop="112364" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="518" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="600" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108511" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="789" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E262220" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112401" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCT</genome_strand>
        <mrna_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTC-GACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCANCTTTGAAACGTTTTTGTAATAC-ATGGGTGAATGTATGTAATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392861" ref_strand="+" ref_description="SGN-E392861 [TUS-36-D4](-)">
      <seq>cgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggtcgatagcaacgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgattatgctaacaaacaagatcttcctaaaacaaagaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgatcggctttctaacaacatcgccaataaggcctaagttgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccaattacttttatttcgtaaaaattctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcactttgaaacaaaatatgtaatacaatggcgtaatgtatgtaatttcctaaaaaactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110573" stop="108249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110273" g_stop="110157" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="236" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="318" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108701" g_stop="108514" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="506" r_length="188" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="531"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E392861" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110273" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTT</genome_strand>
        <mrna_strand>CGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTCGATAGCAACGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGATTATGCTAACAAACAAGATCTTCCTAAAACAAAGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATCGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTTGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCAATTACTTTTATTTCGTAAAAATTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTGAAACAAAATATGTAATACAATGGCGTAATGTATGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732850" ref_strand="+" ref_description="SGN-E732850 [LB03BC06]">
      <seq>gttaatctcaagctctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatggttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112752" stop="108224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112446" g_stop="112364" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="251" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="322" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="442" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="561" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="643" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108524" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="821" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E732850" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112446" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATG</genome_strand>
        <mrna_strand>GTTAA--TCTCAAGCTCTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723879" ref_strand="+" ref_description="SGN-E723879 [FC22BC05]">
      <seq>gggcgattggcggccaatcggccgaattgatatttcgcgtgaatctcaagctctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttgtaatacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112761" stop="108231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112432" g_stop="112364" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="119" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="289" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="360" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="480" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="599" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="681" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108531" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="852" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E723879" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112432" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGG</genome_strand>
        <mrna_strand>CTCTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722797" ref_strand="+" ref_description="SGN-E722797 [FC18BE04]">
      <seq>cggccaaatcggccgaattgctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatttgcttcttaggaggtcacttttgaaacgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112730" stop="108242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112430" g_stop="112364" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="87" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="257" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="328" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="448" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="567" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="649" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108542" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="809" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E722797" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112430" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTG</genome_strand>
        <mrna_strand>CTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263249" ref_strand="+" ref_description="SGN-E263249 [cLEG-62-J22]">
      <seq>caagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtatgggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttcttaaacatcgccaataaggcctaagtcgaaatagagatgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttatatttcgtcttttttctttcagacattctctgaatctgagtggttatggcatttgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111961" stop="108268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="185" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="256" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="376" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="495" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="576" r_length="81" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108568" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="710" r_length="134" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E263249" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTATGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTTA-AACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGATGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTATATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGAGTGGTTATGGCATTTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263590" ref_strand="+" ref_description="SGN-E263590 [cLEG-60-N19]">
      <seq>ctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcaacattctctgaatctgtgtggttatggcatttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112705" stop="108270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112405" g_stop="112364" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="212" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="604" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108570" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="735" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E263590" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112405" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTC</genome_strand>
        <mrna_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCA-ACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260899" ref_strand="+" ref_description="SGN-E260899 [cLEG-55-M2]">
      <seq>ctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcangcgggtttttatctagtttcatttacttttatttcgtcttttttctttcagaattctctgaatctgtgtgggtatggcatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112701" stop="108272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112401" g_stop="112364" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="518" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="600" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108572" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="729" r_length="129" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E260899" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112401" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCT</genome_strand>
        <mrna_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCANGCGGGTTTTTATCTAGTTTCATTTACTTTTATTTCGTCTTTTTTCTTTCAGA-ATTCTCTGAATCTGTGTGGGTATGGCATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321415" ref_strand="+" ref_description="SGN-E321415 [cTOB-23-A2]">
      <seq>tgacattcaccaagcttttcagccggctatttgccgagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaagggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcaggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctgcatgcaggcgggtttttatctagtttcatttacttttatttcgtcttttttcatacagacattctctgaatctgtgtgggtatggcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111923" stop="108273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111623" g_stop="111483" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="212" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="332" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="451" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="533" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108573" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="662" r_length="129" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E321415" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111623" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGC</genome_strand>
        <mrna_strand>TGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCGAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAAGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCAGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGCATGCAGGCGGGTTTTTATCTAGTTTCATTTACTTTTATTTCGTCTTTTTTCATACAGACATTCTCTGAATCTGTGTGGGTATGGCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309135" ref_strand="+" ref_description="SGN-E309135 [cLEZ-1-K13](-)">
      <seq>tgtttttgctacaacaagatcttctaatgcaatgaatgctgctgaaataccgcaagcttggactccctccctcagcaggcctggtacatccaaagcacttgtgcaacttctggagagggactctatagggtcttgattggctttctacaactcgccaataaggctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatctgtgtggttatggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="109338" stop="108276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109038" g_stop="108946" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="162" r_length="79" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108701" g_stop="108576" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="287" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E309135" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.049" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109038" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATT</genome_strand>
        <mrna_strand>TGTTTTTGCT-AC-AACAAGATCTT-CTAATGCAATGAATGCTGCTGAAAT-ACCG-CAAGCTTGGACTCC-CTCCCTCA-GCAG-G-C-CTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTAT-AGGGTCTTGATTGGCTTTCT-ACAAC-TCGCCAATAAG.................................................................................G-CTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704928" ref_strand="+" ref_description="SGN-E704928 [FA25CF10]">
      <seq>ctcaagctctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttcattggctttctaacaacatcgccaataaggcctacgtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctccgaatctgtgtggttatggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112732" stop="108277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112438" g_stop="112364" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="245" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="316" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="436" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="555" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="637" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108577" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="762" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E704928" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112438" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCAT</genome_strand>
        <mrna_strand>CTCAAGCTCTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTCATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTACGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCCGAATCTGTGTGGTTATGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362954" ref_strand="+" ref_description="SGN-E362954 [cLPP-2-C2]">
      <seq>agaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcatctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttatttcgtcttttttctttcagacattctctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111934" stop="108292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111634" g_stop="111483" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="223" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="343" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="462" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="544" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108592" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="654" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E362954" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111634" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCT</genome_strand>
        <mrna_strand>AGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCATCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214040" ref_strand="+" ref_description="SGN-E214040 [cLEC-80-C15]">
      <seq>tcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcaggcgggtttttatctagttccatttacttttattttcggctttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112710" stop="108311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112410" g_stop="112364" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="217" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="408" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="527" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="609" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108611" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="700" r_length="91" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E214040" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112410" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTT</genome_strand>
        <mrna_strand>TCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTTCGGCTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213940" ref_strand="+" ref_description="SGN-E213940 [cLEC-80-K9]">
      <seq>gctttctctcactagatccctctttgcccaagctgttcttcagggatcgttataagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgangggtctgattggctttctacnacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgcangcgggtttttatctaagtcatttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112706" stop="108330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112406" g_stop="112364" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="212" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="603" r_length="81" r_score="0.939"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108630" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="674" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E213940" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112406" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGA-GGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTT</genome_strand>
        <mrna_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTT-ATAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGANGGGTC-TGATTGGCTTTCT-ACNACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCANGCGGGTTTTTATCTAAGT-CATTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327835" ref_strand="+" ref_description="SGN-E327835 [cTOC-20-L12]">
      <seq>tgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatganggtcttgattggctttctaacacatcgccaataaggcctaagtcgaaatagaagtgttgcggattcatcctggatgcaggcgggtttttatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112707" stop="108343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112407" g_stop="112364" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="214" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="285" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="405" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="605" r_length="81" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108643" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="664" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E327835" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112407" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTA</genome_strand>
        <mrna_strand>TGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGANGGTCTTGATTGGCTTTCTAAC-ACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAAGTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309134" ref_strand="+" ref_description="SGN-E309134 [cLEZ-1-K13]">
      <seq>ttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111959" stop="108359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="178" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="249" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="488" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="570" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108659" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="613" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E309134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCA</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245618" ref_strand="+" ref_description="SGN-E245618 [cLEF-43-L7]">
      <seq>tttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtgagaccaccatattgtgcaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcggattcatcctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112704" stop="108361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112404" g_stop="112364" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="211" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="282" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="402" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="521" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="603" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108661" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="644" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E245618" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112404" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATG</genome_strand>
        <mrna_strand>TTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTGAGACCACCATATTGTGCAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722798" ref_strand="+" ref_description="SGN-E722798 [FC18BE05]">
      <seq>aatcggccgaattgctctctctctctctgaattctcgagctttctctcactagatccctctttgcccaagctagttcttcagggatcgttaagaagaaagagaaatggggttgactttcaccaagcttttcagccggcatatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcacctggtaagaccaccatattgtacaagctcaagctgggaaaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcaccttcaccgtttgggatgccgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggactcttttttgtggttgatagcagtgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgacgatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaatagagttgttgcgaattcatcctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112730" stop="108362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112430" g_stop="112364" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="253" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="324" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="444" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="563" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="645" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108662" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="685" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E722798" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112430" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCT-GTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGC-TATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGAT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTCTGAATTCTCGAGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTAGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACTTTCACCAAGCTTTTCAGCCGGCATATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCACCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAAAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCACCTTCACCGTTTGGGATGCCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGACTCTTTTTTGTGGTTGATAGCAGTGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGAATTCATCCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549159" ref_strand="+" ref_description="SGN-E549159 [TUS-67-N13]">
      <seq>gttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaaaaaggcctaagtcgaaatagagttgttgcgggattcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111959" stop="108366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="179" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="250" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="370" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="489" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="571" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108701" g_stop="108666" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="608" r_length="37" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E549159" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAATAGAGTTGTTGC-GGATTCATCCT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAAAAAG.................................................................................GCCTAAGTCGAAATAGAGTTGTTGCGGGATTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255701" ref_strand="+" ref_description="SGN-E255701 [cLEG-36-K10]">
      <seq>ctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcctaagtcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112701" stop="108482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112401" g_stop="112364" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="518" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="600" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108688" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="614" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E255701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112401" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTAAGTCGAAAT</genome_strand>
        <mrna_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTAAGTCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731978" ref_strand="+" ref_description="SGN-E731978 [LA28DA01]">
      <seq>ctcaagctctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaacaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtgggtgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112732" stop="108482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112438" g_stop="112364" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="245" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="316" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="436" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="555" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="637" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108701" g_stop="108697" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="642" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E731978" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112438" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
          <exon e_start="108701" e_stop="108697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAGGTACTGATTAAAGTTCCTGTCACAAATTTTCTACGTACACGATTAAATCTCCTCTTTATTCCTAACATCCTCCATTTACAGGCCTA</genome_strand>
        <mrna_strand>CTCAAGCTCTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAACAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGGTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG.................................................................................GCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344699" ref_strand="+" ref_description="SGN-E344699 [cTOF-14-P6]">
      <seq>cctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgctaacaaggcttaaagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111961" stop="108473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="194" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.84"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="265" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="385" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="504" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="586" r_length="82" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E344699" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG</genome_strand>
        <mrna_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCTAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296338" ref_strand="+" ref_description="SGN-E296338 [cLET-19-B10]">
      <seq>cagaacactcagggtctcatttttgtggtttatagcaatgacagagaccgtgtaggggaggcaagacatgaagggcggcaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttctaacaacatcgccaataaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="110549" stop="108482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110249" g_stop="110157" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="213" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108864" g_stop="108783" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="295" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E296338" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110249" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGC-ACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG</genome_strand>
        <mrna_strand>CAGAACACTCAGGGTCTCATTTTTGTGGTTTATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGACATGAAGGGCGGCAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297999" ref_strand="+" ref_description="SGN-E297999 [cLET-38-L12]">
      <seq>ctcaggtttctctctcaatagatccctcattctaaaagctcttttcagggatcatcatcaaggaagcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggcgaggggctttatgagggacttgattggctttctaacaacattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111961" stop="108490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.84"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="528" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108789" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="604" r_length="76" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E297999" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCC</genome_strand>
        <mrna_strand>GGATCATCATCAAGGAAGCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGCGAGGGGCTTTATGAGGGACTTGATTGGCTTTCTAACAACATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260558" ref_strand="+" ref_description="SGN-E260558 [cLEG-54-H5]">
      <seq>ctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112701" stop="108501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112401" g_stop="112364" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="208" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="279" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="399" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="518" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108801" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="582" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E260558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112401" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCT</genome_strand>
        <mrna_strand>CTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250241" ref_strand="+" ref_description="SGN-E250241 [cLEG-11-P5]">
      <seq>ctcactagatccctctttgcccaagctgttctttagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatannnggcatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112699" stop="108504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112399" g_stop="112364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="206" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="276" r_length="70" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="396" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="515" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108804" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="576" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E250241" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112399" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</genome_strand>
        <mrna_strand>CTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATANNNG-GCATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362610" ref_strand="+" ref_description="SGN-E362610 [cLPP-1-P15]">
      <seq>ttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccagagcacttgtgcaacttctggagagggactctatgagggtcttgattggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111959" stop="108504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="178" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="249" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="488" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108804" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="549" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E362610" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAGAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337638" ref_strand="+" ref_description="SGN-E337638 [cTOE-11-H18]">
      <seq>gaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111939" stop="108504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111639" g_stop="111483" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="228" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="348" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="467" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108804" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="528" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E337638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111639" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</genome_strand>
        <mrna_strand>GAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272682" ref_strand="+" ref_description="SGN-E272682 [cLEM-21-K21]">
      <seq>ggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctggagagggactctatgagggtcttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111952" stop="108508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="241" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="361" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="480" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108864" g_stop="108808" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="537" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E272682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTG</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290015" ref_strand="+" ref_description="SGN-E290015 [cLET-5-E23]">
      <seq>gctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112706" stop="108536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112406" g_stop="112364" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="213" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="284" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="523" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108836" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="552" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E290015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112406" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTG</genome_strand>
        <mrna_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261223" ref_strand="+" ref_description="SGN-E261223 [cLEG-65-N17]">
      <seq>ctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcaggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtgcaacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112705" stop="108536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112405" g_stop="112364" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="212" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108836" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="551" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E261223" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112405" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTGCAACTTCTG</genome_strand>
        <mrna_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCAGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTGCAACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724356" ref_strand="+" ref_description="SGN-E724356 [FC23DE02]">
      <seq>tcaagctctctctctctctctgaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaaaaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacaaagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaaaatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112732" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112437" g_stop="112364" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="244" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="315" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="435" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="554" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108845" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="574" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E724356" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112437" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTG</genome_strand>
        <mrna_strand>TCAAGCTCTCTCTCTCTCTCTGAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAAAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAAAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAAATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208966" ref_strand="+" ref_description="SGN-E208966 [cLEC-38-C22]">
      <seq>tcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112710" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112410" g_stop="112364" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="217" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="408" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="527" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108845" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="547" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E208966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112410" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTTGTG</genome_strand>
        <mrna_strand>TCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206440" ref_strand="+" ref_description="SGN-E206440 [cLEC-23-K21]">
      <seq>tttctctcactagatccctctttgcccaagctgttcttcggggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112704" stop="108548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112404" g_stop="112364" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="211" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="282" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="402" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="521" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108848" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="538" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E206440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112404" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTT</genome_strand>
        <mrna_strand>TTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266002" ref_strand="+" ref_description="SGN-E266002 [cLEI-6-D8]">
      <seq>ctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcactggtacatccaaagcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112685" stop="108548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112385" g_stop="112364" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="192" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="263" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="383" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="502" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108848" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="519" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E266002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112385" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACATCCAAAGCACTT</genome_strand>
        <mrna_strand>CTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACATCCAAAGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231142" ref_strand="+" ref_description="SGN-E231142 [cLED-5-I15]">
      <seq>attctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagctnggactccactccctcaggcagcgtcactggtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112714" stop="108641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112414" g_stop="112364" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="221" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="292" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="412" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="531" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81">
            <donor d_prob="0.854" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108864" g_stop="108860" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="536" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E231142" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112414" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
          <exon e_start="108864" e_stop="108860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTGGTAAACCCTCTGCCAGAACATGCGACAACATTCCTTTCTGTTTAAAGACATGCTAAAATGTTTCCCCTTTGCTATATTCAGGTACA</genome_strand>
        <mrna_strand>ATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTNGGACTCCACTCCCTCAGGCAGCGTCACTG.................................................................................GTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271764" ref_strand="+" ref_description="SGN-E271764 [cLEM-8-E9]">
      <seq>gcgtgatggggctcacattcaccaagctcttcagtcggcttttcgccaagaaggaaatgcgcattctaatggttggtcttgatgcagctggtaagaccaccatattgtacaagttgaagctgggagagatcgtgactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcggaggtcaggacaagatccgtccattgtggaggcactacttccagaacactcagggtctcatttttgtggttgatagcaatgatagagaccgtgttgtagaagcaagagatgaattgcataggatgttgaacgaggatgaacttcgggatgctgtgcttctagtatttgctaacaaacaagatcttcctaacgcaatgaatgctgctgaaataactgataagcttggactgcactccctcaggcagcgtcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111935" stop="108646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111635" g_stop="111483" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.84"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="224" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="344" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108946" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="463" r_length="119" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E271764" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111635" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG</genome_strand>
        <mrna_strand>GCGTGATGGGGCTCACATTCACCAAGCTCTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGCATTCTAATGGTTGGTCTTGATGCAGCTGGTAAGACCACCATATTGTACAAGTTGAAGCTGGGAGAGATCGTGACTACTATTCCTACCATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGAGGTCAGGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGAGATGAATTGCATAGGATGTTGAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTTCGGGATGCTGTGCTTCTAGTATTTGCTAACAAACAAGATCTTCCTAACGCAATGAATGCTGCTGAAATAACTGATAAGCTTGGACTGCACTCCCTCAGGCAGCGTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336418" ref_strand="+" ref_description="SGN-E336418 [cTOE-4-K3]">
      <seq>tttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccctcaggcagcgtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112684" stop="108647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112384" g_stop="112364" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="191" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="262" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="382" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108947" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="500" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E336418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112384" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACT</genome_strand>
        <mrna_strand>TTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269672" ref_strand="+" ref_description="SGN-E269672 [cLEM-17-K5]">
      <seq>aattctcgtgctttctcttactagatccctctttgcccaagctgttctggagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctggtgaaataaccgacaagcttggactccactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112715" stop="108662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112415" g_stop="112364" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="222" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="293" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="413" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108962" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="516" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E269672" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112415" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCC</genome_strand>
        <mrna_strand>AATTCTCGTGCTTTCTCTTACTAGATCCCTCTTTGCCCAAGCTGTTCTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGGTGAAATAACCGACAAGCTTGGACTCCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239933" ref_strand="+" ref_description="SGN-E239933 [cLED-29-K8]">
      <seq>caagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttccggatgctgcgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111889" stop="108662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111589" g_stop="111483" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="178" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="298" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108962" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="402" r_length="104" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E239933" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111589" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCC-ACTCCC</genome_strand>
        <mrna_strand>CAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCCGGATGCTGCGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204728" ref_strand="+" ref_description="SGN-E204728 [cLEC-14-F12]">
      <seq>ggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttnctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111883" stop="108662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111583" g_stop="111483" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="172" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="292" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108962" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="395" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E204728" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111583" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCC</genome_strand>
        <mrna_strand>GGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTNCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231291" ref_strand="+" ref_description="SGN-E231291 [cLED-5-L14]">
      <seq>ggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111899" stop="108664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111599" g_stop="111483" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="188" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="308" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108964" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="409" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E231291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111599" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTC</genome_strand>
        <mrna_strand>GGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248862" ref_strand="+" ref_description="SGN-E248862 [cLEF-49-A10]">
      <seq>ctttctctcactagatccctctttgcccaagctgttcttcagggatcgtgaagaagaaagagaaatggggttgaccattcaccaagcttttcagccggctattgccaagaaggaaatgcccatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcacggtctcatttttgtggttgatagcaatgacagagaccgtgtatgggaggcaagagatgaattgcacacgatgttgaatgaggatgagcttcnggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112705" stop="108665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112405" g_stop="112364" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="212" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108965" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E248862" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112405" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGAC-ATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACT</genome_strand>
        <mrna_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTGAAGAAGAAAGAGAAATGGGGTTGACCATTCACCAAGCTTTTCAGCCGGCTA-TTGCCAAGAAGGAAATGCCCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCACGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTATGGGAGGCAAGAGATGAATTGCACACGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCNGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254510" ref_strand="+" ref_description="SGN-E254510 [cLEG-29-A24]">
      <seq>ctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112705" stop="108665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112405" g_stop="112364" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="212" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="283" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="403" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108965" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E254510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112405" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACT</genome_strand>
        <mrna_strand>CTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361733" ref_strand="+" ref_description="SGN-E361733 [cLPP-12-J12]">
      <seq>ttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcanggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggactccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111959" stop="108666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="178" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="249" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108966" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="468" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E361733" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCAC</genome_strand>
        <mrna_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCANGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246761" ref_strand="+" ref_description="SGN-E246761 [cLEF-45-F10]">
      <seq>cgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcnggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112709" stop="108671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112409" g_stop="112364" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="216" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="287" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="407" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108971" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="501" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E246761" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112409" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGAC</genome_strand>
        <mrna_strand>CGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCNGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287517" ref_strand="+" ref_description="SGN-E287517 [cLES-9-M24]">
      <seq>gaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcaacttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcacggtctcatttttgtggttgatagcaatgacagataccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgcgttgcttgaccttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaagcttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111882" stop="108671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111582" g_stop="111483" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="171" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="291" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109064" g_stop="108971" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="385" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E287517" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111582" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGAC</genome_strand>
        <mrna_strand>GAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAACTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCACGGTCTCATTTTTGTGGTTGATAGCAATGACAGATACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGCGTTGCTTGACCTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270561" ref_strand="+" ref_description="SGN-E270561 [cLEN-1-C17]">
      <seq>ctcgtgcttgctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtatgggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgcttttgctaacaaacaagatctttctaatgcaatgaatgctgctgaaataaccgacaagcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112711" stop="108673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112411" g_stop="112364" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="218" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="289" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108973" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="501" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E270561" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112411" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGG</genome_strand>
        <mrna_strand>CTCGTGCTTGCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTATGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGCTTTTGCTAACAAACAAGATCTTTCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271411" ref_strand="+" ref_description="SGN-E271411 [cLEM-5-M10]">
      <seq>aattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgctgtgttgcttgtttttgctaacaaacaagatcttcctaatgcaatgaatgctgctgaaataaccgacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112715" stop="108678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112415" g_stop="112364" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="222" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="293" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="413" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="108978" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="500" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E271411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112415" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="108978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAG</genome_strand>
        <mrna_strand>AATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272452" ref_strand="+" ref_description="SGN-E272452 [cLEM-19-L3]">
      <seq>tctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcnggatgctgtgttgcttgtttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112686" stop="108730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112386" g_stop="112364" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="264" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="384" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="109030" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="419" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E272452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112386" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="109030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGC</genome_strand>
        <mrna_strand>TCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCNGGATGCTGTGTTGCTTGTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200594" ref_strand="+" ref_description="SGN-E200594 [cLEC-9-E15]">
      <seq>ctctctctctctctctcaattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112732" stop="108747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112432" g_stop="112364" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="239" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="310" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="430" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="109047" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="448" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E200594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112432" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="109047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275117" ref_strand="+" ref_description="SGN-E275117 [cLEN-9-K16]">
      <seq>aattctcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112715" stop="108747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112415" g_stop="112364" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="222" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="293" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="413" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="109047" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="431" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E275117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112415" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="109047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCT</genome_strand>
        <mrna_strand>AATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281605" ref_strand="+" ref_description="SGN-E281605 [cLER-14-A19]">
      <seq>cgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgaggatgagcttcgggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112709" stop="108747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112409" g_stop="112364" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="216" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="287" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="407" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109064" g_stop="109047" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="425" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E281605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112409" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
          <exon e_start="109064" e_stop="109047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAGGTAATAACCCTCACCCTCTTTGTAATTTGTGTTATTCTTGCTGGCGTCAAATTTGACTTCTACAACTCAAGAGCTAAATGGCATGGAATTATGTGAATGATTCTGCATAGTTTACTTATAATGCTTCCTTTACAAATGAACTATTTATACTAAATGGTATATGATAATAGCCTCTATAGTCTATAAGTTTAACTAGATCAGTTTTATGTATGTAACACATCATTTAGGTGGCTGTTATTCTGCGTTCATTATGTACTACTTAGTTACTCAAAGGCTGATATTTTCAATGACCCTGAAACCACTCTGCAACTGCTTCTCAAGCATTTGCGTGTCATCTTCTTTGAGCAGGGAAGTGGTTACTGCTTATGATCTACTGTCACACATCCTCTTGAACTAAAACTCCTGAGTTGGTGATGAGACCGTTTTAGCATTAAGATCACTAAGAAAAATAATCTTCAAAAGGTTCCTGGTAAAATATCGAATAAGAATTTTCAATTTTTATGTGAGCTTCATTTGTAGGTACAGATAGTTGCGTTTGCTTCGTACTTTTGGTTAGATTTTGTGTCATATTAGACTGCACCATAAACTTTTCGTTGTTAAGGTCTAAAGATGCACAAGCTAAAAGGTACCATTGGTGGAATGTATCACATAACTGAGACAGTTCAACAACCTTCATCCTTTATAGGAGACATGTGAGAACTCCAGATTGGCAATTAAGTAGTTAGTGATGTATATAGAGAATTTGGGAATAAATGGGTGTGGAAAAGAGAACTTATTCCTTCTACCTCGTCTTTTAAACAAACAGGCAAAACAAAAGGTTTATAATACTTTGCTCAACTTCTCACTCCACAATGTGCGTGTATGAGTCCATTGTTGCTTGAAAAGAACACTAGAAAAATAGGTATGGGGAGGTAGGATATAGGAGAAATGCACGTGGAAATCACAGTCCAAGTTCTCTTTGCTGGTTACACCCCCCTTTTTTATCTTATTTTCAGATATCTACCGTCCATTATTCATCTAACCAGAAAGTGCATAAAGAACTAGATGATACTTTGAATTGGGTTTAACCTTTGTTCTTCCTATATGTCTCAGGATGAGCTTCGGGATGCT</genome_strand>
        <mrna_strand>CGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTTCGGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257870" ref_strand="+" ref_description="SGN-E257870 [cLEG-39-L21]">
      <seq>tttcagccggctatttgccaagaaggaaatgcgcatcctcatgggtggactctatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccgtgtaggggaggcaagagatgaattgcacaggatgttgaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111907" stop="109857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111607" g_stop="111483" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="196" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110157" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="316" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E257870" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111607" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG</genome_strand>
        <mrna_strand>TTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGGTGGACTCTATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359985" ref_strand="+" ref_description="SGN-E359985 [cLPP-9-I12]">
      <seq>tcttctttcagtgctctttaacaaagggatcaccaacaagaaggagaaatggggctgtcattcaccaagcttttcagccggcttttcgccaagaaagaaatgcgaattctcatggttggacttgatgcagctggtaagaccaccatattgtacaagctcaagctgggcgagatcgttactactattcctaccattggtttcaatgtggagactgttgagtacaagaacatcagcttcactgtttgggatgtcgggggtcaggacaagattcgtccattatggaggcactatttccagaacactcagggtctcattttcgtggttgatagcaatgacagagatcgtgttgtggaggcaagagatgagttgcataggatgttaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111944" stop="109858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="196" r_length="170" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="267" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110158" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="386" r_length="119" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E359985" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGA</genome_strand>
        <mrna_strand>GGATCACCAACAAGAAGGAGAAATGGGGCTGTCATTCACCAAGCTTTTCAGCCGGCTTTTCGCCAAGAAAGAAATGCGAATTCTCATGGTTGGACTTGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGCGAGATCGTTACTACTATTCCTACCATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAGACTGTTGAGTACAAGAACATCAGCTTCACTGTTTGGGATGTCGGGGGTCAGGACAAG.............................................................................................................................................................ATTCGTCCATTATGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTCGTGGTTGATAGCAATGACAGAGATCGTGTTGTGGAGGCAAGAGATGAGTTGCATAGGATGTTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361637" ref_strand="+" ref_description="SGN-E361637 [cLPP-12-O13]">
      <seq>ttcttcagggatcgtttagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatgctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatggggaaactgttgaatacaagaacatcagcttcacctgtttgggatgtcaggggtcaagacaagatccgtgcattgtggaggcactatttccagaacactcaaggtctcatttttgtggttgatagcaatgacagagaccgtgtaagggaggccagagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111959" stop="109879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="178" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="250" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110276" g_stop="110179" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E361637" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACC-GTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGA</genome_strand>
        <mrna_strand>GGATCGTTTAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATGCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGGGGAAACTGTTGAATACAAGAACATCAGCTTCACCTGTTTGGGATGTCAGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTGCATTGTGGAGGCACTATTTCCAGAACACTCAAGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAAGGGAGGCCAGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392757" ref_strand="+" ref_description="SGN-E392757 [TUS-36-D4]">
      <seq>tgttttcgctcactaaatccctttttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcaatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattgttttttatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggatgatagccatgacagagaccgtgtaggggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112707" stop="109888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112407" g_stop="112364" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="214" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="285" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110190" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="372" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E392757" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112407" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAG</genome_strand>
        <mrna_strand>TGTTTTCGCTCACTAAATCCCTTTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCAATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGATGATAGCCATGACAGAGACCGTGTAGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275795" ref_strand="+" ref_description="SGN-E275795 [cLEN-18-B1]">
      <seq>gctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtggaggcactatttccagaacactcagggtctcatttttgtggttgatagcaatgacagagaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112706" stop="109900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112406" g_stop="112364" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="213" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="284" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110200" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="361" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E275795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112406" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCG</genome_strand>
        <mrna_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271124" ref_strand="+" ref_description="SGN-E271124 [cLEM-22-J23]">
      <seq>tttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatccgtccattgtgtaggcactatttccagaacactcaaggtctcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112704" stop="109925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112404" g_stop="112364" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="211" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="282" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110276" g_stop="110225" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="334" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E271124" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112404" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
          <exon e_start="110276" e_stop="110225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAGGTATACTCTGTTTTAAAATTTTAATCCAAAGACTTATCCTCTGCATAAAGTTATAGTCTCTGTTAGACAAAATTAGTCTTGCCTCAACTTCCCTCTCTACTTGTGTTGCATAGAATAGTATCTAACGTACCCAGCTTATTTATGTTTTCTTTGGCAGATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTG</genome_strand>
        <mrna_strand>TTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG.............................................................................................................................................................ATCCGTCCATTGTGTAGGCACTATTTCCAGAACACTCAAGGTCTCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338202" ref_strand="+" ref_description="SGN-E338202 [cTOE-13-L2]">
      <seq>tcgtgctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtcaagacaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112710" stop="110132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112410" g_stop="112364" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="217" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E338202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112410" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG</genome_strand>
        <mrna_strand>TCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239564" ref_strand="+" ref_description="SGN-E239564 [cLED-23-O19]">
      <seq>gctttctctcactagatccctctttgcccaagctgttcttcagggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112706" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112406" g_stop="112364" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="213" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110442" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="276" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E239564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112406" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTC</genome_strand>
        <mrna_strand>GCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203874" ref_strand="+" ref_description="SGN-E203874 [cLEC-17-M8]">
      <seq>tgacattcaccaagcttttcagccggctatttgccaagaaggaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111923" stop="110143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111623" g_stop="111483" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110504" g_stop="110443" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="203" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E203874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111623" e_stop="111483"/>
          <exon e_start="110504" e_stop="110443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGT</genome_strand>
        <mrna_strand>TGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273799" ref_strand="+" ref_description="SGN-E273799 [cLEN-7-D8]">
      <seq>ctcactagatccctctttgcccaagctgttcttcaaggatcgttaagaagaaagagaaatggggttgacattcaccaagcttttcagccggctatttgccaagaaagaaatgcgcatcctcatggttggactcgatgcagctggtaagaccaccatattgtacaagctcaagctgggagaaatcgtcaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagcttcaccgtttgggatgtcgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112699" stop="110145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112399" g_stop="112364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="206" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110445" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="266" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E273799" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112399" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGG</genome_strand>
        <mrna_strand>CTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAAGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243342" ref_strand="+" ref_description="SGN-E243342 [cLEF-16-O23]">
      <seq>actagatccctctttgcccaagctgttattcagggatcgttacgaagaaagagaaaaggggttgacattcaccaagcttttcatccggctctatgccaagaaggaaacgcgcatccttatggttggactcgatgcagctggttagaccaccatattgtgcaagctcaagctgggagaaatcgttaccaccattccaactattggtttcaatgtggaaactgttgaatacaagaacatcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="112696" stop="110165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112396" g_stop="112364" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111652" g_stop="111483" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="203" r_length="170" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110504" g_stop="110465" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="243" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E243342" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112396" e_stop="112364"/>
          <exon e_start="111652" e_stop="111483"/>
          <exon e_start="110504" e_stop="110465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAGGTAAAATCTTCAATTTGTTCGATTTATCATTCTCAGATTTACGTTTTCTTAGCTTTTGATTCAATTTTTTCTGTGAATTTATGTTGTTATGATGTGATCTGAAGATTGATACATGAAACTTGCTTCGTGCTCTGAGAAATTGTACTAATTTGACGATTTGATTCGTGATTATTGATCTAGATCTTAAGTTTTTGTTAGGCAGAGTTATCAATACTTTACTATATTGGTAAGATTTTTGTTTTGTTTTGTTTATTTTATGTCCAAAAGGAGCATTGGAATTGGAATTTGGTCAAATTGTATGACCGGTAGATCATAGGGTTCGAGTCCTAGAAGAGATGTAGTGATGAAGTTCAAATCCATGAAGAGAGAAAAACACTAGGTGATTTTTTCTCTTTTCTAGCCTTGGTGGATAGAGTGGTAGGCATTTCGTATAATTAGTCAAGGTGCATGCAAGGTGGTCCGGACACCATGGTTATTAAAAAAAAACAGAGAAACTAGTGATGCATGCATCAGGGTAGACAGACTCTTTTCATACCCTCGGGGAATGCGGGATGTGTTTTGCATTCTATTTTGTTAATTTTATTGTCCATTTTCTAAGAGATGTCGGGTTGATTGCTCATTTTGATGCATCTTTGGTTCTGTTGTATCATTGGATATTAGAGGTGAACTATGATTTTTGATTTGTGTAATTAAATGTTGTAATGTATGCAGGGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTGGTATGTACTTTACTGACATGCAGCAAAATGCCTGGCAATAACATTTCTACAGTTCAAGTTGTATAAGTATGACTAGTTCTGTTGCAATTATGACTCAAAAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAACCAATATTTAGTCGATGTGATTGTCTTAGTTGTTTAGTAGTGTGTGTTGTTTATAATTATCAGAACTTTCCTTTAAAATGCACTAGATAAAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTT</genome_strand>
        <mrna_strand>ACTAGATCCCTCTTTGCCCAAGCTGTTATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGTTACGAAGAAAGAGAAAAGGGGTTGACATTCACCAAGCTTTTCATCCGGCTCTATGCCAAGAAGGAAACGCGCATCCTTATGGTTGGACTCGATGCAGCTGGTTAGACCACCATATTGTGCAAGCTCAAGCTGGGAGAAATCGTTACCACCATTCCAACTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542451" ref_strand="+" ref_description="SGN-E542451 [TUS-63-M6]">
      <seq>aagatgaacctattgcttcttaaaacagaaaaaaaagaaaatggggataggggaagtggaaaaggggggagggggttacaaggtggggaatcaacccttgccagtcaccaacaatgtgaaagtttaggtacctaaccaactgagctactcagttgcccaaaagaaagactaacctatcttcttatcaaaaaaaaaaaaagagacttaacctatcattttgataaggagacagaaaaggtgcatagaactagtactataactgtccctctacttttactgtttgctgcaattgattagtttgttataacttagtcatccttcgttgtctcagttctttctgtcaatccagggaaagcaatgtttaatcaggggcatgcggtccttaatcaaaataattattttgaacttttaaatatgttatctttgatgcaaatgtaaaggctcctaaaaagaagcttagattatcagtgttgtagaaatacctgtgtttgagacagctatgtccttttggatcactcatgaatatcatttttaagaatattgactaagactacattttctggtgaaataacacaaacacaaatcccccccccccccaccttttgcacaggtaagagtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111684" stop="110462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111384" g_stop="110762" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E542451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111384" e_stop="110762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAAC</genome_strand>
        <mrna_strand>AAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302322" ref_strand="+" ref_description="SGN-E302322 [cLEW-19-L2]">
      <seq>agatgaacctattgcttcttaaaacagaaaaaaaagaaaatggggataggggaagtggaaaaggggggagggggttacaaggtggggaatcaacccttgccagtcaccaacaatgtgaaagtttaggtacctaaccaactgagctactcagttgcccaaaagaaagactaacctatcttcttatcaaaaaaaaaaaaagagacttaacctatcattttgataaggagacagaaaaggtgcatagaactagtactataactgtccctctacttttactgtttgctgcaattgattagtttgttataacttagtcatccttcgttgtctcagttctttctgtcaatccagggaaagcaatgtttaatcaggggcatgcggtccttaatcaaaataattattttgaacttttaaatatgttatctttgatgcaaatgtaaaggctcctaaaaagaagcttagattatcagtgttgtagaaatacctgtgtttgagacagctatgtccttttggatcactcatgaatatcatttttaagaatattgactaagactacattttctggtgaaataacacaaacacaaatcccccccccccccaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="111683" stop="110482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111383" g_stop="110782" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E302322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111383" e_stop="110782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTT</genome_strand>
        <mrna_strand>AGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371759" ref_strand="+" ref_description="SGN-E371759 [TUS-30-K13]">
      <seq>gaaggcaaaataacaggagcataaatgatgaaaatacagaaagcttagtttccattgtgtgggattactatcaacgcggtatagtggaggaactattcgatccgagtctcatgttgcacaactacaacaccatcaatgtgaaaaatgagatcgcgagagttttacatgtggggcttttgtgcactcaagagatccaaacagtacgtccatccatgtctaaggcattacggatgatcctcgagaaagaagaagagctgccggcacctactaatccaccatttgttgacgagaacaccatggaacttcatggtccttgggagaagtattcgcttagtcaaggtgattctagttcaattgccaacttatctcatagttcattttaccccagatgatgatatttcaaagccctgaaactgatgctaacgattataagcatcatttcgcctcgtgctcttgacgatcatagtaatcgagcagttagttataacaacaattgtgtatcagttccaaacaaaagttggggtcggctatctgaattctcgattctacttaagctttgttagcacaggagtatgattgtataggatctccttcattggaaaaggattgtaacgtagtatgtataaatagggctcagtgtaataacatagtttatttgtcttaatgatattctttgagtggttatatttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="114977" stop="113599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114677" g_stop="114622" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114536" g_stop="113893" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="700" r_length="644" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E371759" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114677" e_stop="114622"/>
          <exon e_start="114536" e_stop="113893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATTGTAATCACCATTTACCAAAGTTTTCAATCTTGAAGAACCTTTTTGCATATTTTTGTTTAACTCTTATATTGGATGAACTTAACAGGTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCTATATGGTAT</genome_strand>
        <mrna_strand>GAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT.....................................................................................GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGGTTATATTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371758" ref_strand="+" ref_description="SGN-E371758 [TUS-30-K13](-)">
      <seq>aaggcaaaataacaggagcataaatgatgaaaatacagaaagcttagtttccattgtgtgggattactatcaacgcggtatagtggaggaactattcgatccgagtctcatgttgcacaactacaacaccatcaatgtgaaaaatgagatcgcgagagttttacatgtggggcttttgtgcactcaagagatccaaacagtacgtccatccatgtctaaggcattacggatgatcctcgagaaagaagaagagctgccggcacctactaatccaccatttgttgacgagaacaccatggaacttcatggtccttgggagaagtattcgcttagtcaaggtgattctagttcaattgccaacttatctcatagttcattttaccccagatgatgatatttcaaagccctgaaactgatgctaacgattataagcatcatttcgcctcgtgctcttgacgatcatagtaatcgagcagttagttataacaacaattgtgtatcagttccaaacaaaagttggggtcggctatctgaattctcgattctacttaagctttgttagcacaggagtatgattgtataggatctccttcattggaaaaggattgtaacgtagtatgtataaatagggctcagtgtaataacatagtttatttgtcttaatgatattctttgagtgtttatatttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="114976" stop="113599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114676" g_stop="114622" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114536" g_stop="113893" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="699" r_length="644" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E371758" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114676" e_stop="114622"/>
          <exon e_start="114536" e_stop="113893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATTGTAATCACCATTTACCAAAGTTTTCAATCTTGAAGAACCTTTTTGCATATTTTTGTTTAACTCTTATATTGGATGAACTTAACAGGTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCTATATGGTAT</genome_strand>
        <mrna_strand>AAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT.....................................................................................GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286960" ref_strand="+" ref_description="SGN-E286960 [cLES-6-A2]">
      <seq>gaaggcaaaataacaggagcataaatgatgaaaatacagaaagcttagtttccattgtgtgggattactatcaacgcggtatagtggaggaactattcgatccgagtctcatgttgcacaactacaacaccatcaatgtgaaaaatgagatcgcgagagttttacatgtggggcttttgtgcactcaagagatccaaacagtacgtccatccatgtctaaggcattacggatgatcctcgagaaagaagaagagctgccggcacctactaatccaccatttgttgacgagaacaccatggaacttcatggtccttgggagaagtattcgcttagtcaaggtgattctagttcaattgccaacttatctcatagttcattttaccccagatgatgatatttcaaagccctgaaactgatgctaacgattataagcatcatttcgcctcgtgctcttgacgatcatagtaatcgagcagttagttataacaacaattgtgtatcagttccaaacaaaagttggggtcggctatctgaattctcgattctacttaagctttgttagcacaggagtatgattgtataggatctccttcattggaaaaggattgtaacgtagtatgtataaatagggctcactgtaataacataatttatttgtcttaatgatattctttgagtgtttatatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="114977" stop="113599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114677" g_stop="114622" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114536" g_stop="113902" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="691" r_length="635" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="702"/>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E286960" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114677" e_stop="114622"/>
          <exon e_start="114536" e_stop="113902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATTGTAATCACCATTTACCAAAGTTTTCAATCTTGAAGAACCTTTTTGCATATTTTTGTTTAACTCTTATATTGGATGAACTTAACAGGTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCT</genome_strand>
        <mrna_strand>GAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT.....................................................................................GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCACTGTAATAACATAATTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256472" ref_strand="+" ref_description="SGN-E256472 [cLEG-38-H23]">
      <seq>gctgattttgggttggccaggtcattccaagaagacaaaagtcacataagcactgccattgctggcacattaggatatatggctccagaatacttggcacatggtcaattgacagaaaaagcagatgtttacagctttggagttcttctaatggaaattgttactggaaggcaaaataacaggagcataaatgatgaaaatacagaaagcttagtttccattgtgtgggattactatcaacgcggtatagtggaggaactattcgatccgagtctcatgttgcacaactacaacaccatcaatgtgaaaaatgagatcgcgagagttttacatgtggggcttttgtgcactcaagagatccaaacagtacgtccatccatgtctaaggcattacggatgatcctcgagaaagaagaagagctgccggcacctactaatccaccatttgttgacgagaacaccatggaacttcatggtccttgggagaagtattcgcttagtcaaagtgattctagttcaattgccaacttatctcatagttcattttaccccagatgatgatatttcaaagccctgaaactgatgctaacgattataagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="115226" stop="113858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114926" g_stop="114856" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114855" i_stop="114773" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114772" g_stop="114622" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114536" g_stop="114158" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="601" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E256472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114926" e_stop="114856"/>
          <exon e_start="114772" e_stop="114622"/>
          <exon e_start="114536" e_stop="114158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATTGTTAGTATTTCTTCATCTTGTCTTCTACTTTTTTCGCGTAAAAGTACACACAAACTTGAAAACTAATATGGTCTGATATGCAGAGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATTGTAATCACCATTTACCAAAGTTTTCAATCTTGAAGAACCTTTTTGCATATTTTTGTTTAACTCTTATATTGGATGAACTTAACAGGTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCA</genome_strand>
        <mrna_strand>GCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATT...................................................................................AGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT.....................................................................................GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAAGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310393" ref_strand="+" ref_description="SGN-E310393 [cTOA-10-G24]">
      <seq>ggactcaaagctccgtgcaaagattgctgattttgggttggccaggtcattccaagaagacaaaagtcacataagcactgccattgctggcacattaggatatatggctccagaatacttggcacatggtcaattgacagaaaaagcagatgtttacagctttggagttcttctaatggaaattgttactggaaggcaaaataacaggagcataaatgatgaaaatacagaaagcttagtttccattgtgtgggattactatcaacgcggtatagtggaggaactattcgatccgagtctcatgttgcacaactacaacaccatcaatgtgaaaaatgagatcgcgagagttttacatgtggggcttttgtgcactcaagagatccaaacagtacgtccatccatgtctaaggcattacggatgatcctcgagaaagaagaagagctgccggcacctactaatccaccatttgttgacgagaacaccatggaacttcatggtccttgggagaagtattcgcttagtcaaggtgattctagttcaattgccaacttatctcatagttcattttaccccagatgatgatatttcaaagccctgaaactgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="-" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="115251" stop="113873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114951" g_stop="114856" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114855" i_stop="114773" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114772" g_stop="114622" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="247" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114536" g_stop="114173" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="611" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="-" ref_id="SGN-E310393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114951" e_stop="114856"/>
          <exon e_start="114772" e_stop="114622"/>
          <exon e_start="114536" e_stop="114173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCAAAGCTCCGTGCAAAGATTGCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATTGTTAGTATTTCTTCATCTTGTCTTCTACTTTTTTCGCGTAAAAGTACACACAAACTTGAAAACTAATATGGTCTGATATGCAGAGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATTGTAATCACCATTTACCAAAGTTTTCAATCTTGAAGAACCTTTTTGCATATTTTTGTTTAACTCTTATATTGGATGAACTTAACAGGTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGC</genome_strand>
        <mrna_strand>GGACTCAAAGCTCCGTGCAAAGATTGCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATT...................................................................................AGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT.....................................................................................GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243423" ref_strand="+" ref_description="SGN-E243423 [cLED-34-O9]">
      <seq>tttatgagtggctcgacattccttggatgaaggactattacaactttgggtttgatcacttcagtatgacctggaggaaagttggtatccggggtcttcttgattaccttttagggaatgctggtccatttgatttaggggactggatacttcctgatcttaccatccaggggtgaattaagttgaacagacacttgcattcatttccgcaaacatactacttcagctatgctaccaagcatcctacaaaagttatgggttctgcagttccttctggtatttgagggatacatgctctgctattcattatagtcctgcaaatgagccaatggcggcatcctcaacatgtttctcctccgtataagggctatagggatgaagattggtgggacaatgacggtgctctcaacaccatatctatgacacatactcgtttgtcggttgaacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="147795" stop="149323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148095" g_stop="148467" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148468" i_stop="148944" i_length="477">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148945" g_stop="149023" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="452" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E243423" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148095" e_stop="148467"/>
          <exon e_start="148945" e_stop="149023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAGTGGCTCGACATTCCTTGGATGAAGGACTATTACAACTTTGGGTTTGATCACTTCAGTATGACCTGGAGGAAAGTTGGTATCCGGGGTCTTCTTGATTACCTTTTAGGGAATGCTGGTCCATTTGCTTCAGGGGACTGGATACTTCCTGATCTTACCATCCAGGGGTCAATCAAGTTGAACAGACACTTGCATACATTTCCGCAAACATACTACTTCAGCTATGCTACCAAGCATCCCACAAAAGTTATGGGTTTTGCAGTTCCTTCTGGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAGGTTCGTGTCTATTACTCCTCCTTTACCAATCTACTTAGATAGATGACGATACATTATAGTACAAGCCCTATTCACTTGAGTTTTAATTAGTCAGCAAGATTTTGTAACTCCATTGATGAAAATTTTCTGAAGCATTGAGACTCGTTATTGCGTGACTGTATGTTATGCCTTGCTGCTTTGCTGATCCTTAACCCATCGGGCTATATTCTCATGACAAGTTCTTGTGGGTTGTTAGACTAGTTCGTAGATATAGGTTTCCATCCTTTGAACAATCTGTTTACGATCAGCTTAGAGTCATATTTATCATCTGACAATTTTCAAAACCAGTTATTCAAATGCACCATTAAGTACTCTCACTCAAAATTATGCAAGTAATCATCATACACGGAAGCATTATGGAACGACAAATAACTGATTCAATACTTGCAATAGCTTGTATCATCATCTCATTGTTTTTATTTCATCTAATACATGCAGGGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCT</genome_strand>
        <mrna_strand>TTTATGAGTGGCTCGACATTCCTTGGATGAAGGACTATTACAACTTTGGGTTTGATCACTTCAGTATGACCTGGAGGAAAGTTGGTATCCGGGGTCTTCTTGATTACCTTTTAGGGAATGCTGGTCCATTTGATTTAGGGGACTGGATACTTCCTGATCTTACCATCCAGGGGTGAATTAAGTTGAACAGACACTTGCATTCATTTCCGCAAACATACTACTTCAGCTATGCTACCAAGCATCCTACAAAAGTTATGGGTTCTGCAGTTCCTTCTGGTATTTGAGGGATACATGCTCTGCTATTCATTATAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATACTCGTTTGTCGGTTGAACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549639" ref_strand="+" ref_description="SGN-E549639 [TUS-6-G11](-)">
      <seq>ggcattcgagggatacatcctctgctattcattagagtcctgcaaatgagccaatggcggcatcctcaacatgtttctcctccgtataagggctatagggatgaagattggtgggacaatgacggtgctctcaacaccatatctatgacacatcctcgtttgccggttgaacaccctagttgccttgtaattaaagattctgattgccagccgttgcaacgaggcatctggtactataaaattatagaaggcgaccacattttcttcgtcgtgaatcgtgaaagagaaggagttcaattcgatttgatctacaacagcatattcgagcgctgcaggaaacatgtcttaagaaagacaacagcactgccaaaccaagtaactcctgaatagtcagtaagatacttttctcatttgtttatgaaatactgtattatcacattctttgtagttcttttacacgctgtcgaaaatctatttcgtaaagggaaataagattttacggtcaatgtctctcacactgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="148070" stop="149796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148370" g_stop="148467" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="148468" i_stop="148944" i_length="477">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148945" g_stop="149076" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="230" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149077" i_stop="149201" i_length="125">
            <donor d_prob="0.660" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149202" g_stop="149496" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="525" r_length="295" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E549639" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148370" e_stop="148467"/>
          <exon e_start="148945" e_stop="149076"/>
          <exon e_start="149202" e_stop="149496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAGGTTCGTGTCTATTACTCCTCCTTTACCAATCTACTTAGATAGATGACGATACATTATAGTACAAGCCCTATTCACTTGAGTTTTAATTAGTCAGCAAGATTTTGTAACTCCATTGATGAAAATTTTCTGAAGCATTGAGACTCGTTATTGCGTGACTGTATGTTATGCCTTGCTGCTTTGCTGATCCTTAACCCATCGGGCTATATTCTCATGACAAGTTCTTGTGGGTTGTTAGACTAGTTCGTAGATATAGGTTTCCATCCTTTGAACAATCTGTTTACGATCAGCTTAGAGTCATATTTATCATCTGACAATTTTCAAAACCAGTTATTCAAATGCACCATTAAGTACTCTCACTCAAAATTATGCAAGTAATCATCATACACGGAAGCATTATGGAACGACAAATAACTGATTCAATACTTGCAATAGCTTGTATCATCATCTCATTGTTTTTATTTCATCTAATACATGCAGGGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAACGTGGCATCTGGTAGGTGACCAGTCAGATTGCCTGTCCACAGATTAACTAGACAGTCCATATGCCAATCAGGTTATCACTTGTGTTGATACATTGGTGTTTAAGGCAGCAGTGTTGATTGTTCCTCTCATGTTCAGGTACTATAAAATTATAGAAGGCGACCACATTTTCTTCGTCGTGAATCGTGAAAGAGCTGGAGTTCAATTCGATTTGATCTACAACAGCATATTCGAGCGCTGCAGGAAACATGTCTTAAGAAAGACAACAGCACTGCCAAACCAAGTAACTCCTGAATAGTCAGTAAGATACTTTTCTCATTTGTTTATGAAATACTGTATTATCACATTCTTTGTAGTTCTTTTACACGCTGTCGAAAATCTATTTCGTAAAACGAAATAAGATTTTACGGTCAATGTCTCTCACACTGTTCTT</genome_strand>
        <mrna_strand>GGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAACGAGGCATCTG.............................................................................................................................GTACTATAAAATTATAGAAGGCGACCACATTTTCTTCGTCGTGAATCGTGAAAGAGAAGGAGTTCAATTCGATTTGATCTACAACAGCATATTCGAGCGCTGCAGGAAACATGTCTTAAGAAAGACAACAGCACTGCCAAACCAAGTAACTCCTGAATAGTCAGTAAGATACTTTTCTCATTTGTTTATGAAATACTGTATTATCACATTCTTTGTAGTTCTTTTACACGCTGTCGAAAATCTATTTCGTAAAGGGAAATAAGATTTTACGGTCAATGTCTCTCACACTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362476" ref_strand="+" ref_description="SGN-E362476 [cLPP-1-N23]">
      <seq>taaggttgggatttttgcagctattttactagtttgcgcgattctatcacctctgctagcctcatcatttcccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150165" stop="152177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150465" g_stop="151014" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="151877" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="591" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E362476" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150465" e_stop="151014"/>
          <exon e_start="151846" e_stop="151877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGG--AA-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAAC</genome_strand>
        <mrna_strand>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362863" ref_strand="+" ref_description="SGN-E362863 [cLPP-2-B2]">
      <seq>taaggttgggatttttgcagctattttactagtttgcgcgattctatcacctctgctagcctcatcatttcccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgcagaagaataagaccaggaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150165" stop="151025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150465" g_stop="150726" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E362863" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150465" e_stop="150726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGAAAAGAAGAAGAAGAAGAACAAGAACAAGAAGAACAAAAAA</genome_strand>
        <mrna_strand>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGCAGAAGAATAAGACCAGGAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364935" ref_strand="+" ref_description="SGN-E364935 [cLPP-17-K21]">
      <seq>ttgcagctattttactagtttgcgcgattctatcacctctgctagcctcatcatttcccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaacaccaactggtgggaaaatagagaagttatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150179" stop="152208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150479" g_stop="151014" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="151908" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="608" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E364935" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150479" e_stop="151014"/>
          <exon e_start="151846" e_stop="151908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGG--AA-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCA</genome_strand>
        <mrna_strand>TTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAACACCAACTGGTGGGAAAATAGAGAAGTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359966" ref_strand="+" ref_description="SGN-E359966 [cLPP-9-M23]">
      <seq>gcgattctatcacctctgctagcctcatcatttcccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150202" stop="151265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150502" g_stop="150965" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E359966" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150502" e_stop="150965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGG--AA-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTAC</genome_strand>
        <mrna_strand>GCGATTCTATCACCTCTGCTAGCCTCATCATTTCCCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363043" ref_strand="+" ref_description="SGN-E363043 [cLPP-2-N21]">
      <seq>tttcccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaacaccaactggtgggaaaatagagaagttatcaccgtcaaatggtgttacagtcaagggatttgaactcattgacgagatcaaagcagaactcgaagagaactgcccaggcattgtctcgtgctctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150232" stop="152305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150532" g_stop="151014" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="152005" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="652" r_length="160" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E363043" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150532" e_stop="151014"/>
          <exon e_start="151846" e_stop="152005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGG--AA-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATG</genome_strand>
        <mrna_strand>TTTCCCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAACACCAACTGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTGTTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362577" ref_strand="+" ref_description="SGN-E362577 [cLPP-1-O18]">
      <seq>ccaatcatcgtcctgaatttctagaacatgattctagtaagacagacgtaacgatccatggtgataataacaatgttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaacaccaactggtggggaaaaaattttaaagttatcaccgtcaaatggtgttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150236" stop="152226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150536" g_stop="151014" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="151926" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="572" r_length="84" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E362577" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150536" e_stop="151014"/>
          <exon e_start="151846" e_stop="151926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGG--AA-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGT-GGG--AAAATAGAGAAGTTATCACCGTCAAATGGTATTACA</genome_strand>
        <mrna_strand>CCAATCATCGTCCTGAATTTCTAGAACATGATTCTAGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAACACCAACTGGTGGGGAAAAAATTTTAAAGTTATCACCGTCAAATGGTGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374062" ref_strand="+" ref_description="SGN-E374062 [TUS-33-M9]">
      <seq>ttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaacaccaactggtgggaaaatagagaagttatcaccgtcaaatggtgttacagtcaagggatttgaactcattgacgagatcaaagcagaactcgaagagaactgcccaggcattgtctcgtgctctgatgttttagcctatttatctcgtgacgcctttgttgcatcgggactcccccattacgaggtgtctggtggccgacgtgacggcatggaatcgcgcgtagaaaacgtcgttggcaacctcccattgcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150311" stop="152434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150611" g_stop="151014" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="152134" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="702" r_length="289" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E374062" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150611" e_stop="151014"/>
          <exon e_start="151846" e_stop="152134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGA--A-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACTCCCCCATTACGAGGTGTCTGGTGGCAGACGTGACGGCATGGAATCGCGCGTAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATG</genome_strand>
        <mrna_strand>TTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAACACCAACTGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTGTTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACTCCCCCATTACGAGGTGTCTGGTGGCCGACGTGACGGCATGGAATCGCGCGTAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362773" ref_strand="+" ref_description="SGN-E362773 [cLPP-2-I23]">
      <seq>ttgttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150311" stop="151311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150611" g_stop="151011" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E362773" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150611" e_stop="151011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGA--A-AAGAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTC</genome_strand>
        <mrna_strand>TTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361542" ref_strand="+" ref_description="SGN-E361542 [cLPP-6-D1]">
      <seq>ttcatgccaatgtcaatgacatcgcgattccttgctcaaattatgagacaaggaacgaaaggtccttaaaggaaaagaagaagtcgaagaagaataagaacaagaagaagaagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggaaatcatcaaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150314" stop="151301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150614" g_stop="151001" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E361542" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150614" e_stop="151001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGAAAA---GAA---GAAGAAG---AAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGA</genome_strand>
        <mrna_strand>TTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTAAAGGAAAAGAAGAAGTCGAAGAAGAATAAGAACAAGAAGAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332758" ref_strand="+" ref_description="SGN-E332758 [cTOD-18-M22]">
      <seq>aaattatgaaacgaggaacgaatggtccttgaaggaaaagaagaagaagaagaacaagaaccagaggagggcccgagaaatgaaccatcacgaacacgattttgaggctttcaatttggagcatccccaaatacaaggtgtccgccatggatatccacaagcttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaggattgagagagggtttttatcaaaatacatgtcctcaagcagaggagatcatcagaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaggcttttcttacatgattgctttgtcaaaggttgcgatggatcaatattgctcgatacaacaccaaccggtgggaaaatagagaagttatcaccgtcaaatggtattacaggcaagggatttgaactcattgacgagatcatagcagagctcgaagagaactgcccaggcattgtctcatgctctgatgttttagcctatttatctcgtgacgcctttgttgcatcgggacgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150351" stop="152352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150651" g_stop="151014" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="152052" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="571" r_length="207" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E332758" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150651" e_stop="151014"/>
          <exon e_start="151846" e_stop="152052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGAAAAGAAGAAGAAGAAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACTCCCC</genome_strand>
        <mrna_strand>AAATTATGAAACGAGGAACGAATGGTCCTTGAAGGAAAAGAAGAAGAAGAAGAACAAGAACCAGAGGAGGGCCCGAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTGGAGCATCCCCAAATACAAGGTGTCCGCCATGGATATCCACAAGCTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAGATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGGCAAGGGATTTGAACTCATTGACGAGATCATAGCAGAGCTCGAAGAGAACTGCCCAGGCATTGTCTCATGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364437" ref_strand="+" ref_description="SGN-E364437 [cLPP-20-J18]">
      <seq>aagaacaaaaaagaaatgaaccatcacgaacacgattttgaggctttcaattttgagcatccccaaatagaaggtgtccgccatggatatccacaagtttttcctgaacataacgtagatccgattactaaagaacacgaagaaccagagattttagaaagattgagagagggtttttatcaaaatacatgttctcaagcagaggaaatcatacaaaatggcctaattagagcctttcaaaatgactctactattgctgctgccatccctaagcttttcttacatgattgctttgtcaaaggttgcgatggatccatattgctcgatacaacaccaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="150415" stop="152185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150715" g_stop="151014" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151846" g_stop="151885" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="340" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E364437" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150715" e_stop="151014"/>
          <exon e_start="151846" e_stop="151885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAAGTAAGTTCTCACTTATATGCAATTATTCATAAATTCTAAAAAAAATATTTGGCACGACGAAAAATATTTTCAAGTGTTTGGTTAGAGAGAGCGAAGAATTGATAAGTATATTAGCATTCAAGAGAATTGATGAAGAAAAGTAAATGAAAAATAGTTTAGGACAACCAAACACTAGAAAAATGACTTTTATCTTTCGAAAAATGTTTCTTATTTGCAACCATGAAAATAGAGTTTAAGTTTCATACACAGACGATATGTAAGAAGTATTTAGGTCATCTAAATGACAACTTAAGACTTGATAAAAATTACCAACATGGGTTGTGGTGCACTGGTTGTGGGAGTGTTTCACCCTTAAACCAGAGGTCTCAGGTTCGAGCCCTGAGTATGGAGAAAATCCTGTTGGGAGCGTCATCCCCTAATAGGCCCTGCAGTGCACGATCCGGGATCCGGATTTAGTCGGAGCCTGGGTATGGAGAAATCCTGTTGGGAGCGCCACCCCAAATGAGCCCTGCAGTGCGCGATCCGGATTTAGACGGAGCTCCAATGTAGGGAGAAAATCCTGTTGGGAGCGTCAGGAGTCCGGATTTAGTCGGAGCTCCAATGTGTGGAGAAAATACTGTTGGGAGCGCCATCCCCAAATGGGTCGTGCAGTGTGTGATCCAAATTTAGTCTGAGCTCCAATATGAGGCTCCGGACACCGAGTGGAAAACCAAAAATTAAGACTTGATAAAAGTTCATTGATAACTTACTACTAAAACATATGAAATTACATAGATGATCGATCATGATTCTTTTTATACTGTCAGTGTATGTAACTTATCGTATATACAGGGTTGCGATGGATCAATATTGCTCGATACAACACCAACCG</genome_strand>
        <mrna_strand>AAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAAGATTGAGAGAGGGTTTTTATCAAAATACATGTTCTCAAGCAGAGGAAATCATACAAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAAGCTTTTCTTACATGATTGCTTTGTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGATGGATCCATATTGCTCGATACAACACCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364556" ref_strand="+" ref_description="SGN-E364556 [cLPP-18-B14]">
      <seq>tcgcgcgtagaaaacgtcgttggcgacctcccattgcctgatgacacagtaggccaaatgattcaacttttcaacagaaaaggcctaaatgcagaagatttagttgtcttaattggtgcacactccattggagtagctcattgtttcaactttctttatcgaatggacacacccgagaaggcccaaatggttgatccgcgacttgggagtgttatgaaatttacatgtactggccaaatgagtacaatagcgttcgatgcaacaacacaatacaaaatggactcagtattttacaagcaattgttgatgaaaaaaggtttactcgaatccgatcaagctttgacacaagatataagaacaaggggacttgtccaaagatttagcaatgatgaagtggggtggtttaacaaattcggcgtggccatgaacaagcttggggcagtagaggtgctcaccggaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="151792" stop="152854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152092" g_stop="152554" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E364556" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152092" e_stop="152554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGCGTAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATGACACAGTAGACCAAATGATTCAACTTTTCAACAGAAAAGGCCTAAATGCAGAAGATTTAGTTGTCTTAATTGGTGCACACTCCATTGGAGTAGCTCATTGTTTCAACTTTCTTTATCGAATGGACACACCCGAGAAGGCACAAATGGTTGATCCGCGACTTGGGAATGTTATGAAATTTACATGTACTGGACAAATGAGTACAATAGCGTTCGACGCAACAACACAATACAAAATGGACTCAGTATTTTACAAGCAATTGTTGATGAAAAAAGGTTTACTCGAATCCGATCAAGCTTTGACACAAGATATAAGAACAAGGGGACTTGTCCAAAGATTTAGCAATGATGAAGTGGGGTGGTTTAACAAATTCGGCGTGGCCATGAACAAGCTTGGGGCGGTAGAGGTGCTCACCGGAAACC</genome_strand>
        <mrna_strand>TCGCGCGTAGAAAACGTCGTTGGCGACCTCCCATTGCCTGATGACACAGTAGGCCAAATGATTCAACTTTTCAACAGAAAAGGCCTAAATGCAGAAGATTTAGTTGTCTTAATTGGTGCACACTCCATTGGAGTAGCTCATTGTTTCAACTTTCTTTATCGAATGGACACACCCGAGAAGGCCCAAATGGTTGATCCGCGACTTGGGAGTGTTATGAAATTTACATGTACTGGCCAAATGAGTACAATAGCGTTCGATGCAACAACACAATACAAAATGGACTCAGTATTTTACAAGCAATTGTTGATGAAAAAAGGTTTACTCGAATCCGATCAAGCTTTGACACAAGATATAAGAACAAGGGGACTTGTCCAAAGATTTAGCAATGATGAAGTGGGGTGGTTTAACAAATTCGGCGTGGCCATGAACAAGCTTGGGGCAGTAGAGGTGCTCACCGGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374061" ref_strand="+" ref_description="SGN-E374061 [TUS-33-M9](-)">
      <seq>tagaaaacgtcgttggcaacctcccattgcctgatgacacagtaggccaaatgattcaacttttcaacagaaaaggcctaaatgcagaagatttagttgtcttaattggtgcacactccattggagtagctcattgtttcaactttctttatcgaatggacacacccgagaaggcccaaatggttgatccgcgacttgggagtgttatgaaatttacatgtactggccaaatgagtacaatagcgttcgatgcaacaacacaatacaaaatggactcagtattttacaagcaattgttgatgaaaaaaggtttactcgaatccgatcaagctttgacacaagatataagaacaaggggacttgtccaaagatttagcaatgatgaagtggggtggtttaacaaattcggcgtggccatgaacaagcttggggcagtagaggtgctcaccggaaaccaagggcaaatcaggaaacaatgtcgagctgttaacttataataagagtttaacttgtatacactgactgattctgatttgacaatgctctaaatatgtatcacaatttggatgattaattttttttcatatattttttttcgccatcggtgaaagaagatgtaatttgctcattcaaaacatcatcaaggacctactcaaacaaaaaatgaagaattttttttttcacttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0069E17-C4LPk/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0069E17.1" temp_strand="+" temp_description="C01HBa0069E17.1  AC225020.1 htgs_phase:1 submitted_to_sgn_as:031008.C15 sequenced_by:agencourt upload_account_name:agencourt-bacs 031008.assem.ace.1 from 2 to 47891">
        <position start="151799" stop="153075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152099" g_stop="152782" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0069E17.1" gen_strand="+" ref_id="SGN-E374061" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0069E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152099" e_stop="152782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATGACACAGTAGACCAAATGATTCAACTTTTCAACAGAAAAGGCCTAAATGCAGAAGATTTAGTTGTCTTAATTGGTGCACACTCCATTGGAGTAGCTCATTGTTTCAACTTTCTTTATCGAATGGACACACCCGAGAAGGCACAAATGGTTGATCCGCGACTTGGGAATGTTATGAAATTTACATGTACTGGACAAATGAGTACAATAGCGTTCGACGCAACAACACAATACAAAATGGACTCAGTATTTTACAAGCAATTGTTGATGAAAAAAGGTTTACTCGAATCCGATCAAGCTTTGACACAAGATATAAGAACAAGGGGACTTGTCCAAAGATTTAGCAATGATGAAGTGGGGTGGTTTAACAAATTCGGCGTGGCCATGAACAAGCTTGGGGCGGTAGAGGTGCTCACCGGAAACCAAGGGCAAATCAGGAAACAATGTCGAGCTGTTAACTTATAATAAGAGTTTAACTTGTATACACTGACTGATTCTGATTTGACAATGCTCTAAATATGTATCACAATTTGGATGATTAATTTTTTTTC----A----------CCATCGGTGAAAGAAGATGTAATTTGCTCATTCAAAACATCATCATGGACCTACTCAAACAAGAAATGAAGAATTCTTTTTTTCACTTGAGAATTTTTTT</genome_strand>
        <mrna_strand>TAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATGACACAGTAGGCCAAATGATTCAACTTTTCAACAGAAAAGGCCTAAATGCAGAAGATTTAGTTGTCTTAATTGGTGCACACTCCATTGGAGTAGCTCATTGTTTCAACTTTCTTTATCGAATGGACACACCCGAGAAGGCCCAAATGGTTGATCCGCGACTTGGGAGTGTTATGAAATTTACATGTACTGGCCAAATGAGTACAATAGCGTTCGATGCAACAACACAATACAAAATGGACTCAGTATTTTACAAGCAATTGTTGATGAAAAAAGGTTTACTCGAATCCGATCAAGCTTTGACACAAGATATAAGAACAAGGGGACTTGTCCAAAGATTTAGCAATGATGAAGTGGGGTGGTTTAACAAATTCGGCGTGGCCATGAACAAGCTTGGGGCAGTAGAGGTGCTCACCGGAAACCAAGGGCAAATCAGGAAACAATGTCGAGCTGTTAACTTATAATAAGAGTTTAACTTGTATACACTGACTGATTCTGATTTGACAATGCTCTAAATATGTATCACAATTTGGATGATTAATTTTTTTTCATATATTTTTTTTCGCCATCGGTGAAAGAAGATGTAATTTGCTCATTCAAAACATCATCAAGGACCTACTCAAACAAAAAATGAAGAATTTTTTTTTTCACTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>338</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13342" PGL_stop="8613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13342" e_stop="12979"/>
            <exon e_start="8911" e_stop="8856"/>
            <exon e_start="8770" e_stop="8613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.775" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13342" e_stop="12979" e_length="364"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12978" i_stop="8912" i_length="4067"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8911" e_stop="8856" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.775">
            <gDNA_intron_boundary i_start="8855" i_stop="8771" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="8770" e_stop="8613" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13342" stop="12979"/>
              <exon start="8911" stop="8856"/>
              <exon start="8770" stop="8613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAGAGAGAAGGAACTAATTGAGAGGACCGGAAGTGCTAATGTGCCGCAGATATTTCTGAATGATAAGTTGTTAGGTGGACTGGTGGCGTTGAACTCGCTACGGAATAGCGGGATGTTGGAGAAGAAATTTGCAGAAATGTTGGCCGGAAAATGCCCGGAGGATGCACCGGCACCACCGGTTTACGGTTTCGACGACGATTACGAGGAGCAAAACGACGAAATGGTAGATATTGTAAGAGTATTGAGGCAAAAGCTTCCGATACAGGACAGAATCATGAGGATGAAAATAGTAAAAAATTGCTTCTCCGGCGGTGAGCTTGTGGAGGTTCTGATCCACCACTTGGACTGCGGCAGGAAAAAG : GCTGTGGAAATTGGGAAGAACCTGGCGAGAAGGCATTTTATTCACCAAGTCTTTGG : AGAAAATGAATTTGAAGATGGAAAACACTTCTATAGATTCCTTGAACATGAGCCTTTTGTTCCCAAATGCTATAATTTTCGAGGATCCACAAATGACAATGAACCCAAGGACGTTGCTGTGTTAGGTCAAAGGCTTGGTAAAATAATGTCTGCATTAC</gDNA_template>
            <first_frame> *  K  R  E  G  T  N  *  E  D  R  K  C  *  C  A  A  D  I  S  E  *  *  V  V  R  W  T  G  G  V  E  L  A  T  E  *  R  D  V  G  E  E  I  C  R  N  V  G  R  K  M  P  G  G  C  T  G  T  T  G  L  R  F  R  R  R  L  R  G  A  K  R  R  N  G  R  Y  C  K  S  I  E  A  K  A  S  D  T  G  Q  N  H  E  D  E  N  S  K  K  L  L  L  R  R  *  A  C  G  G  S  D  P  P  L  G  L  R  Q  E  K   : G  C  G  N  W  E  E  P  G  E  K  A  F  Y  S  P  S  L  W  :  R  K  *  I  *  R  W  K  T  L  L  *  I  P  *  T  *  A  F  C  S  Q  M  L  *  F  S  R  I  H  K  *  Q  *  T  Q  G  R  C  C  V  R  S  K  A  W  *  N  N  V  C  I   </first_frame>
            <second_frame>  K  R  E  K  E  L  I  E  R  T  G  S  A  N  V  P  Q  I  F  L  N  D  K  L  L  G  G  L  V  A  L  N  S  L  R  N  S  G  M  L  E  K  K  F  A  E  M  L  A  G  K  C  P  E  D  A  P  A  P  P  V  Y  G  F  D  D  D  Y  E  E  Q  N  D  E  M  V  D  I  V  R  V  L  R  Q  K  L  P  I  Q  D  R  I  M  R  M  K  I  V  K  N  C  F  S  G  G  E  L  V  E  V  L  I  H  H  L  D  C  G  R  K  K  :  A  V  E  I  G  K  N  L  A  R  R  H  F  I  H  Q  V  F  G :   E  N  E  F  E  D  G  K  H  F  Y  R  F  L  E  H  E  P  F  V  P  K  C  Y  N  F  R  G  S  T  N  D  N  E  P  K  D  V  A  V  L  G  Q  R  L  G  K  I  M  S  A  L  </second_frame>
            <third_frame>   K  E  R  R  N  *  L  R  G  P  E  V  L  M  C  R  R  Y  F  *  M  I  S  C  *  V  D  W  W  R  *  T  R  Y  G  I  A  G  C  W  R  R  N  L  Q  K  C  W  P  E  N  A  R  R  M  H  R  H  H  R  F  T  V  S  T  T  I  T  R  S  K  T  T  K  W  *  I  L  *  E  Y  *  G  K  S  F  R  Y  R  T  E  S  *  G  *  K  *  *  K  I  A  S  P  A  V  S  L  W  R  F  *  S  T  T  W  T  A  A  G  K  R :   L  W  K  L  G  R  T  W  R  E  G  I  L  F  T  K  S  L   : E  K  M  N  L  K  M  E  N  T  S  I  D  S  L  N  M  S  L  L  F  P  N  A  I  I  F  E  D  P  Q  M  T  M  N  P  R  T  L  L  C  *  V  K  G  L  V  K  *  C  L  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13341" stop="12979"/>
                    <exon start="8911" stop="8856"/>
                    <exon start="8770" stop="8614"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KREKELIERTGSANVPQIFLNDKLLGGLVALNSLRNSGMLEKKFAEMLAGKCPEDAPAPPVYGFDDDYEEQNDEMVDIVRVLRQKLPIQDRIMRMKIVKNCFSGGELVEVLIHHLDCGRKKAVEIGKNLARRHFIHQVFGENEFEDGKHFYRFLEHEPFVPKCYNFRGSTNDNEPKDVAVLGQRLGKIMSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20084" PGL_stop="19606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20084" e_stop="19606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="20084" e_stop="19606" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20084" stop="19847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20083" stop="19606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAAAGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCTCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAACAAACGTGCCATCATCTTCAACTCAACAGTAACTCTAGCCAGTCTTCAGTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  S  D  T  *  *  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  K  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  D  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  T  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  S  T  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  V  P  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  K  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  I  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  L  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  H  H  L  Q  L  N  S  N  S  S  Q  S  S  V  L  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  R  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  S  T  F  M  F  S  S  C  L  I  V  E  C  N  K  R  A  I  I  F  N  S  T  V  T  L  A  S  L  Q  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19821" stop="19606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTSTFMFSSCLIVECNKRAIIFNSTVTLASLQYSGYQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20542" PGL_stop="20141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20542" e_stop="20141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="20542" e_stop="20141" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20542" stop="20141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTAGGTGGAGGTAGGTTATGGTTTTTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTAATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGTATGAATGTAATTATATAATTGTGATTATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATGGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACATG</gDNA_template>
            <first_frame> *  S  *  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  V  *  M  *  L  Y  N  C  D  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  W  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  M </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  F  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  N  N  I  V  N  P  A  M  C  L  I  V  C  L  Y  E  C  N  Y  I  I  V  I  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  G  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   V  L  G  G  G  R  L  W  F  F  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  M  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20601" PGL_stop="21075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20601" e_stop="21075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="20601" e_stop="21075" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20601" stop="21055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20602" stop="21075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGTAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCTAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCGAGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTTGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGGGTTCCGT</gDNA_template>
            <first_frame> I  N  S  P  S  L  S  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  K  M  V  I  I  T  H  *  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  P  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  *  T  G  I  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  E  P  V  T  V  R  P  A  I  P  S  R  S  S  E  S  *  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  W  V  P  </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  R  W  *  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  L  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  S  L  *  R  S  V  L  P  F  R  H  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  G  F  R </second_frame>
            <third_frame>   Q  F  S  F  S  L  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  L  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  L  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  R  A  C  D  G  P  S  C  H  S  V  T  K  F  R  E  L  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20789" stop="21031"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDLDWDYATCDGPSCLRRSVLQVVARFRDSISTKESVTVRRACDGPSCHSVTKFRELIFSTQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="33155" PGL_stop="34422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33155" e_stop="33618"/>
            <exon e_start="34294" e_stop="34422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="33155" e_stop="33618" e_length="464"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33619" i_stop="34293" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34294" e_stop="34422" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33155" stop="33618"/>
              <exon start="34294" stop="34422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGACTGAAGAATGGGTAATGTCTTACCTTTTGGAATTTACTTCAGAAGATATCAGTTTTGAAGAAACAAATTGAAAATTTCTGCTCTACACTTTTTTTTCAGCTGCTCACAATGTTCTCTTCATTGTTCTGAAATTTTAAATAGTTTTTGTCTTGTCAAATTAAAAATTACTGTTTTGTGCAGTGGGTTCAATGTGATAAGTGTGAAGCTTGGCAACATCAGATTTGTGCATTGTTCAATGGTAGGAGGAATGATGGTGGGCAAGCCGAGTATACCTGTCCCAATTGCTATATTATAGAGGTTGAAAGAGGTGAGCGTAAGCCCTTACCACAGAGTGCTGTTCTTGGAGCCAAAGATCTGCCTCGCACATGTCTCAGTGATCATATTGAGGTTCGATTAGATAGGGTTTTGAAGGATGATAGACAAAAAAGAGCAGAACGTGAAGGAAAAAGTTATGATGAG : GTTCCCGGTGCTGAAGGGCTTGTTGTAAGAGTTGTGTCATCAGTAGACAAAAAGTTAGAAGTGAAATCAAGGTTTCTTGAGGTCTTTCAAGAAGAGAACTATCCGCTGGAGTTCCCATATAAATCAAAG</gDNA_template>
            <first_frame> G  D  *  R  M  G  N  V  L  P  F  G  I  Y  F  R  R  Y  Q  F  *  R  N  K  L  K  I  S  A  L  H  F  F  F  S  C  S  Q  C  S  L  H  C  S  E  I  L  N  S  F  C  L  V  K  L  K  I  T  V  L  C  S  G  F  N  V  I  S  V  K  L  G  N  I  R  F  V  H  C  S  M  V  G  G  M  M  V  G  K  P  S  I  P  V  P  I  A  I  L  *  R  L  K  E  V  S  V  S  P  Y  H  R  V  L  F  L  E  P  K  I  C  L  A  H  V  S  V  I  I  L  R  F  D  *  I  G  F  *  R  M  I  D  K  K  E  Q  N  V  K  E  K  V  M  M  R :   F  P  V  L  K  G  L  L  *  E  L  C  H  Q  *  T  K  S  *  K  *  N  Q  G  F  L  R  S  F  K  K  R  T  I  R  W  S  S  H  I  N  Q   </first_frame>
            <second_frame>  E  T  E  E  W  V  M  S  Y  L  L  E  F  T  S  E  D  I  S  F  E  E  T  N  *  K  F  L  L  Y  T  F  F  S  A  A  H  N  V  L  F  I  V  L  K  F  *  I  V  F  V  L  S  N  *  K  L  L  F  C  A  V  G  S  M  *  *  V  *  S  L  A  T  S  D  L  C  I  V  Q  W  *  E  E  *  W  W  A  S  R  V  Y  L  S  Q  L  L  Y  Y  R  G  *  K  R  *  A  *  A  L  T  T  E  C  C  S  W  S  Q  R  S  A  S  H  M  S  Q  *  S  Y  *  G  S  I  R  *  G  F  E  G  *  *  T  K  K  S  R  T  *  R  K  K  L  *  *   : G  S  R  C  *  R  A  C  C  K  S  C  V  I  S  R  Q  K  V  R  S  E  I  K  V  S  *  G  L  S  R  R  E  L  S  A  G  V  P  I  *  I  K  </second_frame>
            <third_frame>   R  L  K  N  G  *  C  L  T  F  W  N  L  L  Q  K  I  S  V  L  K  K  Q  I  E  N  F  C  S  T  L  F  F  Q  L  L  T  M  F  S  S  L  F  *  N  F  K  *  F  L  S  C  Q  I  K  N  Y  C  F  V  Q  W  V  Q  C  D  K  C  E  A  W  Q  H  Q  I  C  A  L  F  N  G  R  R  N  D  G  G  Q  A  E  Y  T  C  P  N  C  Y  I  I  E  V  E  R  G  E  R  K  P  L  P  Q  S  A  V  L  G  A  K  D  L  P  R  T  C  L  S  D  H  I  E  V  R  L  D  R  V  L  K  D  D  R  Q  K  R  A  E  R  E  G  K  S  Y  D  E  :  V  P  G  A  E  G  L  V  V  R  V  V  S  S  V  D  K  K  L  E  V  K  S  R  F  L  E  V  F  Q  E  E  N  Y  P  L  E  F  P  Y  K  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33301" stop="33618"/>
                    <exon start="34294" stop="34422"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSCQIKNYCFVQWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIIEVERGERKPLPQSAVLGAKDLPRTCLSDHIEVRLDRVLKDDRQKRAEREGKSYDEVPGAEGLVVRVVSSVDKKLEVKSRFLEVFQEENYPLEFPYKSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35695" PGL_stop="41012"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35695" e_stop="35830"/>
            <exon e_start="35922" e_stop="36064"/>
            <exon e_start="36219" e_stop="36531"/>
            <exon e_start="36928" e_stop="37067"/>
            <exon e_start="40195" e_stop="40273"/>
            <exon e_start="40352" e_stop="40744"/>
            <exon e_start="40958" e_stop="41012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.972"/>
          <exon-intron don_prob="0.977" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35695" e_stop="35830" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.957">
            <gDNA_intron_boundary i_start="35831" i_stop="35921" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="35922" e_stop="36064" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36065" i_stop="36218" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36219" e_stop="36531" e_length="313"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.962">
            <gDNA_intron_boundary i_start="36532" i_stop="36927" i_length="396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36928" e_stop="37067" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37068" i_stop="40194" i_length="3127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40195" e_stop="40273" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40274" i_stop="40351" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="40352" e_stop="40744" e_length="393"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="40745" i_stop="40957" i_length="213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40958" e_stop="41012" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35695" stop="35830"/>
              <exon start="35922" stop="36064"/>
              <exon start="36219" stop="36324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36022" stop="36064"/>
              <exon start="36219" stop="36531"/>
              <exon start="36928" stop="37067"/>
              <exon start="40195" stop="40273"/>
              <exon start="40352" stop="40697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36263" stop="36531"/>
              <exon start="36928" stop="37067"/>
              <exon start="40195" stop="40273"/>
              <exon start="40352" stop="40440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36481" stop="36531"/>
              <exon start="36928" stop="37067"/>
              <exon start="40195" stop="40273"/>
              <exon start="40352" stop="40739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37036" stop="37067"/>
              <exon start="40195" stop="40273"/>
              <exon start="40352" stop="40744"/>
              <exon start="40958" stop="41012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGGATCTGAATGCGCACAACCAAATCATCGTCGTGTTTATCTCTCGTATCTAGATTCTGTCAAATATTTCAGGCCTGAGATCAAAGCTGCATCTGGCGAGGCTCTTCGCACTTATGTGTACCATGAAATTTTG : ATTGGATATTTAGAATATTGCAAAAAGCGTGGTTTCTCAAGTTGCTATATATGGGCTTGTCCTCCACTGAAGGGTGAAGATTATATATTATATTGCCACCCAGAAATCCAGAAAACCCCAAAATCTGACAAACTCAGAGAGTG : GTATTTATCAATGTTACGAAAAGCTGTGAAGGAAAAGATTGTTGTGGATCTCACAAATTTATTTGACCATTTCTTCACCACCACAGGCGAATGTAAAGCTAAAATCACTGCAGCTCGCCTGCCCTATTTTGATGGAGACTATTGGCCTGGTGCAGCAGAGGATATGATTTTTCAACTTCAACAAGAAGAAGATGGGAGGAAACATCATAAGAAGGGGGCTATGAAGAAGACCATATCAAAAAGAGCTCTTAAAGCATCTGGTCAATCCGATCTTTCTGGAAATGCAACTAAGGATATACTTCTAATGCACAAA : CTTGGTGAAACTATTTCTCCAATGAAGGAAGATTTTATTATGGTCCATTTGCAGCATGCATGTACTCATTGCTGTATTCTGATGGTATCCGGTAATCGTTGGGTATGCAAACAATGCAAGAACTTTCAGCTTTGCGACAA : GTGCTATGAAGTTGAGCAAAAACTCGAAGCCAGAGAAAGGCATCCTCTCTATCACAAGGACATTCATATGCTTTATCCA : ACTGAAATTGATGATGTACCTGCTGATACAAAGGATCCAGATGAAATTCTTGAGAGTGAGTTTTTTGATACAAGGCAGGCATTTTTGAGCCTTTGTCAAGGAAACCATTACCAATATGATACCCTGCGGCGTGCTAAACATTCCTCAATGATGGTCCTTTACCACCTTCATAATCCCACTGCACCAGCTTTTGTGACAACTTGCAATATTTGTCATCTTGACATAGAAACAGGTCAAGGTTGGCGGTGTGAAACTTGTCCTGATTATGATGTATGTAATGCTTGCTATCAGAAGGATGGTGGAGTTGATCATCCTCACAAGTTAACTCATCACCCATCCATTGCTGAGCGTGATGCTCAGAATAAAGAAGCTAGACAACAACGAGTTCTGCAG : CTTAGGAAGATGCTTGACCTCTTGGTGCATGCATCTCAGTGCCGCTCTTCCCATT</gDNA_template>
            <first_frame> I  W  I  *  M  R  T  T  K  S  S  S  C  L  S  L  V  S  R  F  C  Q  I  F  Q  A  *  D  Q  S  C  I  W  R  G  S  S  H  L  C  V  P  *  N  F   : D  W  I  F  R  I  L  Q  K  A  W  F  L  K  L  L  Y  M  G  L  S  S  T  E  G  *  R  L  Y  I  I  L  P  P  R  N  P  E  N  P  K  I  *  Q  T  Q  R  V  :  V  F  I  N  V  T  K  S  C  E  G  K  D  C  C  G  S  H  K  F  I  *  P  F  L  H  H  H  R  R  M  *  S  *  N  H  C  S  S  P  A  L  F  *  W  R  L  L  A  W  C  S  R  G  Y  D  F  S  T  S  T  R  R  R  W  E  E  T  S  *  E  G  G  Y  E  E  D  H  I  K  K  S  S  *  S  I  W  S  I  R  S  F  W  K  C  N  *  G  Y  T  S  N  A  Q   : T  W  *  N  Y  F  S  N  E  G  R  F  Y  Y  G  P  F  A  A  C  M  Y  S  L  L  Y  S  D  G  I  R  *  S  L  G  M  Q  T  M  Q  E  L  S  A  L  R  Q  :  V  L  *  S  *  A  K  T  R  S  Q  R  K  A  S  S  L  S  Q  G  H  S  Y  A  L  S   : N  *  N  *  *  C  T  C  *  Y  K  G  S  R  *  N  S  *  E  *  V  F  *  Y  K  A  G  I  F  E  P  L  S  R  K  P  L  P  I  *  Y  P  A  A  C  *  T  F  L  N  D  G  P  L  P  P  S  *  S  H  C  T  S  F  C  D  N  L  Q  Y  L  S  S  *  H  R  N  R  S  R  L  A  V  *  N  L  S  *  L  *  C  M  *  C  L  L  S  E  G  W  W  S  *  S  S  S  Q  V  N  S  S  P  I  H  C  *  A  *  C  S  E  *  R  S  *  T  T  T  S  S  A   : A  *  E  D  A  *  P  L  G  A  C  I  S  V  P  L  F  P   </first_frame>
            <second_frame>  F  G  S  E  C  A  Q  P  N  H  R  R  V  Y  L  S  Y  L  D  S  V  K  Y  F  R  P  E  I  K  A  A  S  G  E  A  L  R  T  Y  V  Y  H  E  I  L  :  I  G  Y  L  E  Y  C  K  K  R  G  F  S  S  C  Y  I  W  A  C  P  P  L  K  G  E  D  Y  I  L  Y  C  H  P  E  I  Q  K  T  P  K  S  D  K  L  R  E  W :   Y  L  S  M  L  R  K  A  V  K  E  K  I  V  V  D  L  T  N  L  F  D  H  F  F  T  T  T  G  E  C  K  A  K  I  T  A  A  R  L  P  Y  F  D  G  D  Y  W  P  G  A  A  E  D  M  I  F  Q  L  Q  Q  E  E  D  G  R  K  H  H  K  K  G  A  M  K  K  T  I  S  K  R  A  L  K  A  S  G  Q  S  D  L  S  G  N  A  T  K  D  I  L  L  M  H  K  :  L  G  E  T  I  S  P  M  K  E  D  F  I  M  V  H  L  Q  H  A  C  T  H  C  C  I  L  M  V  S  G  N  R  W  V  C  K  Q  C  K  N  F  Q  L  C  D  K :   C  Y  E  V  E  Q  K  L  E  A  R  E  R  H  P  L  Y  H  K  D  I  H  M  L  Y  P  :  T  E  I  D  D  V  P  A  D  T  K  D  P  D  E  I  L  E  S  E  F  F  D  T  R  Q  A  F  L  S  L  C  Q  G  N  H  Y  Q  Y  D  T  L  R  R  A  K  H  S  S  M  M  V  L  Y  H  L  H  N  P  T  A  P  A  F  V  T  T  C  N  I  C  H  L  D  I  E  T  G  Q  G  W  R  C  E  T  C  P  D  Y  D  V  C  N  A  C  Y  Q  K  D  G  G  V  D  H  P  H  K  L  T  H  H  P  S  I  A  E  R  D  A  Q  N  K  E  A  R  Q  Q  R  V  L  Q  :  L  R  K  M  L  D  L  L  V  H  A  S  Q  C  R  S  S  H  </second_frame>
            <third_frame>   L  D  L  N  A  H  N  Q  I  I  V  V  F  I  S  R  I  *  I  L  S  N  I  S  G  L  R  S  K  L  H  L  A  R  L  F  A  L  M  C  T  M  K  F  * :   L  D  I  *  N  I  A  K  S  V  V  S  Q  V  A  I  Y  G  L  V  L  H  *  R  V  K  I  I  Y  Y  I  A  T  Q  K  S  R  K  P  Q  N  L  T  N  S  E  S   : G  I  Y  Q  C  Y  E  K  L  *  R  K  R  L  L  W  I  S  Q  I  Y  L  T  I  S  S  P  P  Q  A  N  V  K  L  K  S  L  Q  L  A  C  P  I  L  M  E  T  I  G  L  V  Q  Q  R  I  *  F  F  N  F  N  K  K  K  M  G  G  N  I  I  R  R  G  L  *  R  R  P  Y  Q  K  E  L  L  K  H  L  V  N  P  I  F  L  E  M  Q  L  R  I  Y  F  *  C  T  N :   L  V  K  L  F  L  Q  *  R  K  I  L  L  W  S  I  C  S  M  H  V  L  I  A  V  F  *  W  Y  P  V  I  V  G  Y  A  N  N  A  R  T  F  S  F  A  T   : S  A  M  K  L  S  K  N  S  K  P  E  K  G  I  L  S  I  T  R  T  F  I  C  F  I  Q :   L  K  L  M  M  Y  L  L  I  Q  R  I  Q  M  K  F  L  R  V  S  F  L  I  Q  G  R  H  F  *  A  F  V  K  E  T  I  T  N  M  I  P  C  G  V  L  N  I  P  Q  *  W  S  F  T  T  F  I  I  P  L  H  Q  L  L  *  Q  L  A  I  F  V  I  L  T  *  K  Q  V  K  V  G  G  V  K  L  V  L  I  M  M  Y  V  M  L  A  I  R  R  M  V  E  L  I  I  L  T  S  *  L  I  T  H  P  L  L  S  V  M  L  R  I  K  K  L  D  N  N  E  F  C  S :   L  G  R  C  L  T  S  W  C  M  H  L  S  A  A  L  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35696" stop="35830"/>
                    <exon start="35922" stop="36064"/>
                    <exon start="36219" stop="36531"/>
                    <exon start="36928" stop="37067"/>
                    <exon start="40195" stop="40273"/>
                    <exon start="40352" stop="40744"/>
                    <exon start="40958" stop="41011"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSECAQPNHRRVYLSYLDSVKYFRPEIKAASGEALRTYVYHEILIGYLEYCKKRGFSSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAVKEKIVVDLTNLFDHFFTTTGECKAKITAARLPYFDGDYWPGAAEDMIFQLQQEEDGRKHHKKGAMKKTISKRALKASGQSDLSGNATKDILLMHKLGETISPMKEDFIMVHLQHACTHCCILMVSGNRWVCKQCKNFQLCDKCYEVEQKLEARERHPLYHKDIHMLYPTEIDDVPADTKDPDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCETCPDYDVCNACYQKDGGVDHPHKLTHHPSIAERDAQNKEARQQRVLQLRKMLDLLVHASQCRSSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41140" PGL_stop="42451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41140" e_stop="41175"/>
            <exon e_start="41818" e_stop="42451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41140" e_stop="41175" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.912">
            <gDNA_intron_boundary i_start="41176" i_stop="41817" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="41818" e_stop="42451" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41140" stop="41175"/>
              <exon start="41818" stop="42451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41140" stop="41175"/>
              <exon start="41818" stop="42338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41140" stop="41175"/>
              <exon start="41818" stop="42309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41140" stop="41175"/>
              <exon start="41818" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41140" stop="41175"/>
              <exon start="41818" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41819" stop="42451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41984" stop="42451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42051" stop="42447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42080" stop="42447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42104" stop="42447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42154" stop="42447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCAAAGTATCCGAGTGTCATGTGCCGCGATGCAG : AGATTTGAAAGAACATCTTCGAAGGCTGCAACAGCAAGCTGATTCTCGGCGGCGGGCTGCTGTTATGGAGATGATGAGACAGCGTGCTGCAGAGGTTGCCAACAGTGCTGGGTGACCATATTGTACAAGTTGTAATGGACATACACAAGTTGTTAATGCTGTACTTGTAGGTATCAACATTATTGGGGAAGAAAAGATCTCGTAGCGTACAGGAAACTGCTAACGAACATACAAGCATGTTCATTGCTGGTTAACCATCACCTACCCGTGGACCTATATTATCCGAGTTGCTCTCATCAACAATGCATCTCTTGGAGTGTATAGGATTCCGAGCATTCCCCACCCGTAGCTCATAAGTGATTTTCTTTAAAATTTTATTCTGTGGAATTGTTGAGGGCAAATGTGCCTGTTTTCCTGATTAATTTTATCATGCATTAAACATTGGGATTTCCTTTTCGTGTGAATAGTTAGTTGTCTTATTTAAAAATGCTCAAGTACTTCACATGTAGCAAGTTACTAGTCCTTGCTAAAACTTGTTCTTGACAGTTTTTTACCCAATGTGACGATGATATGAGTCCGAGCTTAAAGCTGAAATCGATATAATATATAGAGATAATTTCTCATTTTATAGTTA</gDNA_template>
            <first_frame> L  Q  S  I  R  V  S  C  A  A  M  Q  :  R  F  E  R  T  S  S  K  A  A  T  A  S  *  F  S  A  A  G  C  C  Y  G  D  D  E  T  A  C  C  R  G  C  Q  Q  C  W  V  T  I  L  Y  K  L  *  W  T  Y  T  S  C  *  C  C  T  C  R  Y  Q  H  Y  W  G  R  K  D  L  V  A  Y  R  K  L  L  T  N  I  Q  A  C  S  L  L  V  N  H  H  L  P  V  D  L  Y  Y  P  S  C  S  H  Q  Q  C  I  S  W  S  V  *  D  S  E  H  S  P  P  V  A  H  K  *  F  S  L  K  F  Y  S  V  E  L  L  R  A  N  V  P  V  F  L  I  N  F  I  M  H  *  T  L  G  F  P  F  R  V  N  S  *  L  S  Y  L  K  M  L  K  Y  F  T  C  S  K  L  L  V  L  A  K  T  C  S  *  Q  F  F  T  Q  C  D  D  D  M  S  P  S  L  K  L  K  S  I  *  Y  I  E  I  I  S  H  F  I  V  </first_frame>
            <second_frame>  C  K  V  S  E  C  H  V  P  R  C  R :   D  L  K  E  H  L  R  R  L  Q  Q  Q  A  D  S  R  R  R  A  A  V  M  E  M  M  R  Q  R  A  A  E  V  A  N  S  A  G  *  P  Y  C  T  S  C  N  G  H  T  Q  V  V  N  A  V  L  V  G  I  N  I  I  G  E  E  K  I  S  *  R  T  G  N  C  *  R  T  Y  K  H  V  H  C  W  L  T  I  T  Y  P  W  T  Y  I  I  R  V  A  L  I  N  N  A  S  L  G  V  Y  R  I  P  S  I  P  H  P  *  L  I  S  D  F  L  *  N  F  I  L  W  N  C  *  G  Q  M  C  L  F  S  *  L  I  L  S  C  I  K  H  W  D  F  L  F  V  *  I  V  S  C  L  I  *  K  C  S  S  T  S  H  V  A  S  Y  *  S  L  L  K  L  V  L  D  S  F  L  P  N  V  T  M  I  *  V  R  A  *  S  *  N  R  Y  N  I  *  R  *  F  L  I  L  *  L </second_frame>
            <third_frame>   A  K  Y  P  S  V  M  C  R  D  A   : E  I  *  K  N  I  F  E  G  C  N  S  K  L  I  L  G  G  G  L  L  L  W  R  *  *  D  S  V  L  Q  R  L  P  T  V  L  G  D  H  I  V  Q  V  V  M  D  I  H  K  L  L  M  L  Y  L  *  V  S  T  L  L  G  K  K  R  S  R  S  V  Q  E  T  A  N  E  H  T  S  M  F  I  A  G  *  P  S  P  T  R  G  P  I  L  S  E  L  L  S  S  T  M  H  L  L  E  C  I  G  F  R  A  F  P  T  R  S  S  *  V  I  F  F  K  I  L  F  C  G  I  V  E  G  K  C  A  C  F  P  D  *  F  Y  H  A  L  N  I  G  I  S  F  S  C  E  *  L  V  V  L  F  K  N  A  Q  V  L  H  M  *  Q  V  T  S  P  C  *  N  L  F  L  T  V  F  Y  P  M  *  R  *  Y  E  S  E  L  K  A  E  I  D  I  I  Y  R  D  N  F  S  F  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48517" PGL_stop="43986"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48517" e_stop="48378"/>
            <exon e_start="46526" e_stop="46047"/>
            <exon e_start="45281" e_stop="43986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="48517" e_stop="48378" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46526" e_stop="46047" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="45281" e_stop="43986" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48517" stop="48378"/>
              <exon start="46526" stop="46121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48378"/>
              <exon start="46526" stop="46148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48378"/>
              <exon start="46526" stop="46211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277246" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48469" stop="48378"/>
              <exon start="46526" stop="46141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294914" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48462" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48462" stop="48378"/>
              <exon start="46526" stop="46134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48461" stop="48378"/>
              <exon start="46526" stop="46047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48459" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="44965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48459" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48453" stop="48378"/>
              <exon start="46526" stop="46167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48451" stop="48378"/>
              <exon start="46526" stop="46230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48444" stop="48378"/>
              <exon start="46526" stop="46074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48442" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48442" stop="48378"/>
              <exon start="46526" stop="46288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48420" stop="48378"/>
              <exon start="46526" stop="46047"/>
              <exon start="45281" stop="45193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46524" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46493" stop="46047"/>
              <exon start="45281" stop="44880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46448" stop="46047"/>
              <exon start="45281" stop="44843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46441" stop="46047"/>
              <exon start="45281" stop="45118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46431" stop="46047"/>
              <exon start="45281" stop="45112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46420" stop="46047"/>
              <exon start="45281" stop="45097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46223" stop="46047"/>
              <exon start="45281" stop="44736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46218" stop="46047"/>
              <exon start="45281" stop="44751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46216" stop="46047"/>
              <exon start="45281" stop="44631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46204" stop="46047"/>
              <exon start="45281" stop="44963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45202" stop="44340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45196" stop="44289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45089" stop="44612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45040" stop="44570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44982" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44788" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44771" stop="44158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44770" stop="44157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44770" stop="44192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44765" stop="44167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44725" stop="44141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554687" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44633" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44574" stop="44136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44544" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44514" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44506" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44499" stop="43986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTATATAGTTGAGCCAAAAAAAAGAGAGTGAAAGAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG : GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG : GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCCA</gDNA_template>
            <first_frame> I  S  I  *  L  S  Q  K  K  E  S  E  R  K  R  K  I  L  K  K  Q  M  G  C  A  S  T  M  T  I  I  I  L  S  *  K  K  K  F  S  L  I  F  L  *  F  R :   D  I  F  Q  L  W  S  *  V  T  T  R  F  *  M  W  G  C  F  *  L  Q  P  F  W  *  Q  S  S  Y  L  H  *  L  C  P  D  L  R  N  V  C  L  Q  W  L  R  H  G  L  L  L  V  G  *  S  V  F  L  K  G  Q  L  *  C  L  D  R  S  I  Q  S  L  G  V  C  L  L  *  I  C  *  T  R  T  S  H  S  S  L  V  Q  K  F  L  H  I  F  S  K  P  Q  K  Q  I  L  A  N  K  R  F  I  S  S  M  C  L  P  L  D  L  V  W  F  L  M  L  I  I  Q  L  G  R  N  S  S  G  S  L  L  K  L  S  E  S  L  S  *  R  A  M  *  I  R  W  L  Q  K  L  R :   N  T  S  R  N  G  V  R  V  V  K  *  T  *  N  M  N  W  S  I  L  S  Y  *  Q  L  V  D  V  C  W  E  K  R  S  A  I  N  S  L  M  M  C  L  L  S  S  M  T  W  T  M  G  C  S  L  S  V  L  S  F  P  T  F  Q  F  Q  P  I  A  D  V  T  M  P  G  R  S  *  Q  R  S  L  Q  T  S  *  I  L  E  N  V  Q  A  R  Q  R  M  I  C  Y  N  A  S  L  T  Q  S  T  K  M  D  G  Q  Q  Q  R  V  R  S  Q  V  F  *  L  L  L  F  S  L  G  S  T  P  V  R  S  L  P  L  G  Q  G  H  T  S  S  P  T  T  S  T  C  R  L  L  *  M  N  R  R  I  *  *  R  N  T  G  I  R  L  I  T  I  S  F  P  R  W  K  S  S  T  D  A  *  R  K  P  S  D  S  I  L  H  *  *  C  F  C  V  V  H  I  A  N  S  V  L  Q  P  E  K  E  K  S  M  T  F  P  R  D  I  S  L  Q  P  H  L  L  L  Q  T  G  C  H  I  S  S  R  I  Q  I  L  T  T  L  I  G  S  A  L  V  E  K  K  I  R  L  Q  E  H  S  H  I  F  L  L  V  E  A  D  M  V  V  L  E  N  H  L  L  I  C  R  L  K  Q  Y  G  V  T  C  *  E  I  S  S  L  N  *  S  R  L  S  L  K  L  T  G  T  L  W  L  S  V  S  K  G  K  *  W  *  S  T  S  A  E  S  S  L  L  N  K  Q  I  T  S  A  *  M  W  *  F  K  I  I  Y  V  G  L  L  N  L  I  S  C  L  M  L  T  S  M  F  N  V  S  P  V  S  L  E  D  C  N  D  *  D  Y  I  I  R  V  *  C  F  T  L  V  C  V  F  F  H  W  I  L  S  Y  S  H  *  Q  *  V  N  S  N  C  T  G  S  Y  L  L  K  R  F  K  F  A  L  Y  S  L  C  N  L  P  Y  V  F   </first_frame>
            <second_frame>  S  L  Y  S  *  A  K  K  K  R  V  K  E  K  G  K  S  S  K  S  K  W  G  A  P  P  L  *  L  S  L  F  S  L  E  K  R  N  F  H  *  F  F  F  N  S   : G  I  F  F  S  Y  G  V  R  *  Q  Q  D  F  E  C  G  V  A  F  S  C  N  P  F  G  S  K  A  H  I  C  T  N  Y  A  Q  I  *  E  T  F  A  S  S  G  *  G  M  A  Y  C  W  W  V  D  P  F  S  *  R  A  S  C  D  A  *  T  G  V  S  K  A  W  E  C  V  Y  S  E  F  V  E  Q  E  H  H  I  L  H  W  S  R  S  F  C  T  F  F  Q  S  P  R  N  R  S  *  P  T  R  G  L  S  V  Q  C  A  Y  L  W  T  W  C  G  F  *  C  *  L  Y  N  *  A  G  T  V  Q  V  L  Y  *  S  S  Q  S  H  *  V  E  G  L  C  R  S  D  G  Y  R  S  *   : G  I  L  L  E  M  G  *  E  W  *  S  R  P  K  I  *  T  G  A  S  Y  H  I  D  S  *  *  M  S  V  G  R  R  G  P  Q  *  T  L  *  *  C  V  C  S  L  P  *  P  G  Q  W  D  A  P  Y  Q  C  Y  L  S  L  P  S  N  S  S  P  S  P  T  *  Q  C  Q  E  E  A  S  R  D  L  C  K  H  H  K  F  S  K  T  Y  R  Q  G  R  E  *  Y  V  T  M  L  H  *  L  K  V  Q  R  W  T  A  N  N  R  G  *  D  H  R  S  S  D  C  C  S  F  R  W  A  A  H  Q  F  D  H  F  H  L  D  R  V  I  P  P  H  Q  R  Q  V  H  V  G  C  C  R  *  T  E  E  S  D  E  E  T  R  E  *  G  *  S  R  Y  P  F  R  D  G  S  P  L  Q  M  H  K  G  S  P  Q  T  P  S  S  T  D  N  A  S  A  *  F  T  *  R  I  Q  C  Y  N  Q  R  R  K  R  V  *  H  S  Q  G  T  Y  R  C  N  L  T  C  F  C  K  Q  A  A  T  Y  L  Q  E  S  R  Y  L  R  P  *  *  V  R  P  W  *  R  R  R  *  G  C  R  S  I  L  I  Y  F  F  W  W  R  Q  T  W  L  S  W  R  T  I  C  L  S  A  D  *  S  N  M  E  S  L  A  E  K  F  R  V  *  T  D  L  A  F  P  *  N  *  L  E  R  Y  G  C  R  C  Q  R  G  S  N  G  E  V  Q  A  P  K  A  L  C  *  I  S  R  *  H  L  H  E  C  G  S  L  R  S  F  M  L  V  C  *  T  L  F  L  V  *  C  *  L  L  C  L  M  L  V  L  F  L  L  K  I  A  M  T  K  I  I  L  L  E  Y  D  V  L  H  *  F  V  F  S  S  I  G  F  Y  H  I  L  T  N  N  K  L  I  Q  T  V  Q  E  V  I  F  *  K  G  L  S  L  H  Y  I  H  Y  A  I  Y  H  M  F  S  </second_frame>
            <third_frame>   L  Y  I  V  E  P  K  K  R  E  *  K  K  K  E  N  P  Q  K  A  N  G  V  R  L  H  Y  D  Y  H  Y  S  L  L  K  K  E  I  F  I  N  F  S  L  I  Q  :  G  Y  F  S  A  M  E  L  G  D  N  K  I  L  N  V  G  L  L  L  V  A  T  L  L  V  A  K  L  I  S  A  L  I  M  P  R  S  K  K  R  L  P  P  V  V  K  A  W  P  I  V  G  G  L  I  R  F  L  K  G  P  V  V  M  L  R  Q  E  Y  P  K  L  G  S  V  F  T  L  N  L  L  N  K  N  I  T  F  F  I  G  P  E  V  S  A  H  F  F  K  A  P  E  T  D  L  S  Q  Q  E  V  Y  Q  F  N  V  P  T  F  G  P  G  V  V  F  D  V  D  Y  T  I  R  Q  E  Q  F  R  F  F  T  E  A  L  R  V  T  K  L  K  G  Y  V  D  Q  M  V  T  E  A  E  :  E  Y  F  S  K  W  G  E  S  G  E  V  D  L  K  Y  E  L  E  H  L  I  I  L  T  A  S  R  C  L  L  G  E  E  V  R  N  K  L  F  D  D  V  S  A  L  F  H  D  L  D  N  G  M  L  P  I  S  V  I  F  P  Y  L  P  I  P  A  H  R  R  R  D  N  A  R  K  K  L  A  E  I  F  A  N  I  I  N  S  R  K  R  T  G  K  A  E  N  D  M  L  Q  C  F  I  D  S  K  Y  K  D  G  R  P  T  T  E  G  E  I  T  G  L  L  I  A  A  L  F  A  G  Q  H  T  S  S  I  T  S  T  W  T  G  S  Y  L  L  T  N  D  K  Y  M  S  A  V  V  D  E  Q  K  N  L  M  K  K  H  G  N  K  V  D  H  D  I  L  S  E  M  E  V  L  Y  R  C  I  K  E  A  L  R  L  H  P  P  L  I  M  L  L  R  S  S  H  S  E  F  S  V  T  T  R  E  G  K  E  Y  D  I  P  K  G  H  I  V  A  T  S  P  A  F  A  N  R  L  P  H  I  F  K  N  P  D  T  Y  D  P  D  R  F  G  P  G  R  E  E  D  K  A  A  G  A  F  S  Y  I  S  F  G  G  G  R  H  G  C  L  G  E  P  F  A  Y  L  Q  I  K  A  I  W  S  H  L  L  R  N  F  E  F  E  L  I  S  P  F  P  E  I  D  W  N  A  M  V  V  G  V  K  G  E  V  M  V  K  Y  K  R  R  K  L  S  V  E  *  A  D  N  I  C  M  N  V  V  V  *  D  H  L  C  W  F  V  K  P  Y  F  L  F  N  V  D  F  Y  V  *  C  *  S  C  F  S  *  R  L  Q  *  L  R  L  Y  Y  *  S  M  M  F  Y  I  S  L  C  F  L  P  L  D  F  I  I  F  S  L  T  I  S  *  F  K  L  Y  R  K  L  S  S  E  K  V  *  V  C  I  I  F  I  M  Q  S  T  I  C  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48482" stop="48378"/>
                    <exon start="46526" stop="46047"/>
                    <exon start="45281" stop="44283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1581</number_coding_nucleotides>
                  <number_encoded_amino_acids>527</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKENPQKANGVRLHYDYHYSLLKKEIFINFSLIQGYFSAMELGDNKILNVGLLLVATLLVAKLISALIMPRSKKRLPPVVKAWPIVGGLIRFLKGPVVMLRQEYPKLGSVFTLNLLNKNITFFIGPEVSAHFFKAPETDLSQQEVYQFNVPTFGPGVVFDVDYTIRQEQFRFFTEALRVTKLKGYVDQMVTEAEEYFSKWGESGEVDLKYELEHLIILTASRCLLGEEVRNKLFDDVSALFHDLDNGMLPISVIFPYLPIPAHRRRDNARKKLAEIFANIINSRKRTGKAENDMLQCFIDSKYKDGRPTTEGEITGLLIAALFAGQHTSSITSTWTGSYLLTNDKYMSAVVDEQKNLMKKHGNKVDHDILSEMEVLYRCIKEALRLHPPLIMLLRSSHSEFSVTTREGKEYDIPKGHIVATSPAFANRLPHIFKNPDTYDPDRFGPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAMVVGVKGEVMVKYKRRKLSVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46467" e_stop="46449"/>
            <exon e_start="46158" e_stop="46047"/>
            <exon e_start="45281" e_stop="43986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="0.526"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.973"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.526">
            <gDNA_exon_boundary e_start="46467" e_stop="46449" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46448" i_stop="46159" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="46158" e_stop="46047" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46046" i_stop="45282" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="45281" e_stop="43986" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46467" stop="46449"/>
              <exon start="46158" stop="46047"/>
              <exon start="45281" stop="45058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45202" stop="44340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45196" stop="44289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45089" stop="44612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45040" stop="44570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44982" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44901" stop="44660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44788" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44771" stop="44158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44770" stop="44157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44770" stop="44192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44765" stop="44167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44725" stop="44141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554687" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44633" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44574" stop="44136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44544" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44535" stop="44153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44514" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44506" stop="44138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44499" stop="43986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTGCAACCCTTTTGGTA : GGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAG : GAATACTTCTCGAAATGGGGTGAGAGTGGTGAAGTAGACCTAAAATATGAACTGGAGCATCTTATCATATTGACAGCTAGTAGATGTCTGTTGGGAGAAGAGGTCCGCAATAAACTCTTTGATGATGTGTCTGCTCTCTTCCATGACCTGGACAATGGGATGCTCCCTATCAGTGTTATCTTTCCCTACCTTCCAATTCCAGCCCATCGCCGACGTGACAATGCCAGGAAGAAGCTAGCAGAGATCTTTGCAAACATCATAAATTCTCGAAAACGTACAGGCAAGGCAGAGAATGATATGTTACAATGCTTCATTGACTCAAAGTACAAAGATGGACGGCCAACAACAGAGGGTGAGATCACAGGTCTTCTGATTGCTGCTCTTTTCGCTGGGCAGCACACCAGTTCGATCACTTCCACTTGGACAGGGTCATACCTCCTCACCAACGACAAGTACATGTCGGCTGTTGTAGATGAACAGAAGAATCTGATGAAGAAACACGGGAATAAGGTTGATCACGATATCCTTTCCGAGATGGAAGTCCTCTACAGATGCATAAAGGAAGCCCTCAGACTCCATCCTCCACTGATAATGCTTCTGCGTAGTTCACATAGCGAATTCAGTGTTACAACCAGAGAAGGAAAAGAGTATGACATTCCCAAGGGACATATCGTTGCAACCTCACCTGCTTTTGCAAACAGGCTGCCACATATCTTCAAGAATCCAGATACTTACGACCCTGATAGGTTCGGCCCTGGTAGAGAAGAAGATAAGGCTGCAGGAGCATTCTCATATATTTCTTTTGGTGGAGGCAGACATGGTTGTCTTGGAGAACCATTTGCTTATCTGCAGATTAAAGCAATATGGAGTCACTTGCTGAGAAATTTCGAGTTTGAACTGATCTCGCCTTTCCCTGAAATTGACTGGAACGCTATGGTTGTCGGTGTCAAAGGGGAAGTAATGGTGAAGTACAAGCGCCGAAAGCTCTCTGTTGAATAAGCAGATAACATCTGCATGAATGTGGTAGTTTAAGATCATTTATGTTGGTTTGTTAAACCTTATTTCTTGTTTAATGTTGACTTCTATGTTTAATGTTAGTCCTGTTTCTCTTGAAGATTGCAATGACTAAGATTATATTATTAGAGTATGATGTTTTACATTAGTTTGTGTTTTCTTCCATTGGATTTTATCATATTCTCACTAACAATAAGTTAATTCAAACTGTACAGGAAGTTATCTTCTGAAAAGGTTTAAGTTTGCATTATATTCATTATGCAATCTACCATATGTTTTCCA</gDNA_template>
            <first_frame> S  C  N  P  F  G   : R  F  L  M  L  I  I  Q  L  G  R  N  S  S  G  S  L  L  K  L  S  E  S  L  S  *  R  A  M  *  I  R  W  L  Q  K  L  R :   N  T  S  R  N  G  V  R  V  V  K  *  T  *  N  M  N  W  S  I  L  S  Y  *  Q  L  V  D  V  C  W  E  K  R  S  A  I  N  S  L  M  M  C  L  L  S  S  M  T  W  T  M  G  C  S  L  S  V  L  S  F  P  T  F  Q  F  Q  P  I  A  D  V  T  M  P  G  R  S  *  Q  R  S  L  Q  T  S  *  I  L  E  N  V  Q  A  R  Q  R  M  I  C  Y  N  A  S  L  T  Q  S  T  K  M  D  G  Q  Q  Q  R  V  R  S  Q  V  F  *  L  L  L  F  S  L  G  S  T  P  V  R  S  L  P  L  G  Q  G  H  T  S  S  P  T  T  S  T  C  R  L  L  *  M  N  R  R  I  *  *  R  N  T  G  I  R  L  I  T  I  S  F  P  R  W  K  S  S  T  D  A  *  R  K  P  S  D  S  I  L  H  *  *  C  F  C  V  V  H  I  A  N  S  V  L  Q  P  E  K  E  K  S  M  T  F  P  R  D  I  S  L  Q  P  H  L  L  L  Q  T  G  C  H  I  S  S  R  I  Q  I  L  T  T  L  I  G  S  A  L  V  E  K  K  I  R  L  Q  E  H  S  H  I  F  L  L  V  E  A  D  M  V  V  L  E  N  H  L  L  I  C  R  L  K  Q  Y  G  V  T  C  *  E  I  S  S  L  N  *  S  R  L  S  L  K  L  T  G  T  L  W  L  S  V  S  K  G  K  *  W  *  S  T  S  A  E  S  S  L  L  N  K  Q  I  T  S  A  *  M  W  *  F  K  I  I  Y  V  G  L  L  N  L  I  S  C  L  M  L  T  S  M  F  N  V  S  P  V  S  L  E  D  C  N  D  *  D  Y  I  I  R  V  *  C  F  T  L  V  C  V  F  F  H  W  I  L  S  Y  S  H  *  Q  *  V  N  S  N  C  T  G  S  Y  L  L  K  R  F  K  F  A  L  Y  S  L  C  N  L  P  Y  V  F   </first_frame>
            <second_frame>  V  A  T  L  L  V  :  G  F  *  C  *  L  Y  N  *  A  G  T  V  Q  V  L  Y  *  S  S  Q  S  H  *  V  E  G  L  C  R  S  D  G  Y  R  S  *   : G  I  L  L  E  M  G  *  E  W  *  S  R  P  K  I  *  T  G  A  S  Y  H  I  D  S  *  *  M  S  V  G  R  R  G  P  Q  *  T  L  *  *  C  V  C  S  L  P  *  P  G  Q  W  D  A  P  Y  Q  C  Y  L  S  L  P  S  N  S  S  P  S  P  T  *  Q  C  Q  E  E  A  S  R  D  L  C  K  H  H  K  F  S  K  T  Y  R  Q  G  R  E  *  Y  V  T  M  L  H  *  L  K  V  Q  R  W  T  A  N  N  R  G  *  D  H  R  S  S  D  C  C  S  F  R  W  A  A  H  Q  F  D  H  F  H  L  D  R  V  I  P  P  H  Q  R  Q  V  H  V  G  C  C  R  *  T  E  E  S  D  E  E  T  R  E  *  G  *  S  R  Y  P  F  R  D  G  S  P  L  Q  M  H  K  G  S  P  Q  T  P  S  S  T  D  N  A  S  A  *  F  T  *  R  I  Q  C  Y  N  Q  R  R  K  R  V  *  H  S  Q  G  T  Y  R  C  N  L  T  C  F  C  K  Q  A  A  T  Y  L  Q  E  S  R  Y  L  R  P  *  *  V  R  P  W  *  R  R  R  *  G  C  R  S  I  L  I  Y  F  F  W  W  R  Q  T  W  L  S  W  R  T  I  C  L  S  A  D  *  S  N  M  E  S  L  A  E  K  F  R  V  *  T  D  L  A  F  P  *  N  *  L  E  R  Y  G  C  R  C  Q  R  G  S  N  G  E  V  Q  A  P  K  A  L  C  *  I  S  R  *  H  L  H  E  C  G  S  L  R  S  F  M  L  V  C  *  T  L  F  L  V  *  C  *  L  L  C  L  M  L  V  L  F  L  L  K  I  A  M  T  K  I  I  L  L  E  Y  D  V  L  H  *  F  V  F  S  S  I  G  F  Y  H  I  L  T  N  N  K  L  I  Q  T  V  Q  E  V  I  F  *  K  G  L  S  L  H  Y  I  H  Y  A  I  Y  H  M  F  S  </second_frame>
            <third_frame>   L  Q  P  F  W  * :   V  F  D  V  D  Y  T  I  R  Q  E  Q  F  R  F  F  T  E  A  L  R  V  T  K  L  K  G  Y  V  D  Q  M  V  T  E  A  E  :  E  Y  F  S  K  W  G  E  S  G  E  V  D  L  K  Y  E  L  E  H  L  I  I  L  T  A  S  R  C  L  L  G  E  E  V  R  N  K  L  F  D  D  V  S  A  L  F  H  D  L  D  N  G  M  L  P  I  S  V  I  F  P  Y  L  P  I  P  A  H  R  R  R  D  N  A  R  K  K  L  A  E  I  F  A  N  I  I  N  S  R  K  R  T  G  K  A  E  N  D  M  L  Q  C  F  I  D  S  K  Y  K  D  G  R  P  T  T  E  G  E  I  T  G  L  L  I  A  A  L  F  A  G  Q  H  T  S  S  I  T  S  T  W  T  G  S  Y  L  L  T  N  D  K  Y  M  S  A  V  V  D  E  Q  K  N  L  M  K  K  H  G  N  K  V  D  H  D  I  L  S  E  M  E  V  L  Y  R  C  I  K  E  A  L  R  L  H  P  P  L  I  M  L  L  R  S  S  H  S  E  F  S  V  T  T  R  E  G  K  E  Y  D  I  P  K  G  H  I  V  A  T  S  P  A  F  A  N  R  L  P  H  I  F  K  N  P  D  T  Y  D  P  D  R  F  G  P  G  R  E  E  D  K  A  A  G  A  F  S  Y  I  S  F  G  G  G  R  H  G  C  L  G  E  P  F  A  Y  L  Q  I  K  A  I  W  S  H  L  L  R  N  F  E  F  E  L  I  S  P  F  P  E  I  D  W  N  A  M  V  V  G  V  K  G  E  V  M  V  K  Y  K  R  R  K  L  S  V  E  *  A  D  N  I  C  M  N  V  V  V  *  D  H  L  C  W  F  V  K  P  Y  F  L  F  N  V  D  F  Y  V  *  C  *  S  C  F  S  *  R  L  Q  *  L  R  L  Y  Y  *  S  M  M  F  Y  I  S  L  C  F  L  P  L  D  F  I  I  F  S  L  T  I  S  *  F  K  L  Y  R  K  L  S  S  E  K  V  *  V  C  I  I  F  I  M  Q  S  T  I  C  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46157" stop="46047"/>
                    <exon start="45281" stop="44283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFDVDYTIRQEQFRFFTEALRVTKLKGYVDQMVTEAEEYFSKWGESGEVDLKYELEHLIILTASRCLLGEEVRNKLFDDVSALFHDLDNGMLPISVIFPYLPIPAHRRRDNARKKLAEIFANIINSRKRTGKAENDMLQCFIDSKYKDGRPTTEGEITGLLIAALFAGQHTSSITSTWTGSYLLTNDKYMSAVVDEQKNLMKKHGNKVDHDILSEMEVLYRCIKEALRLHPPLIMLLRSSHSEFSVTTREGKEYDIPKGHIVATSPAFANRLPHIFKNPDTYDPDRFGPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAMVVGVKGEVMVKYKRRKLSVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48517" e_stop="48378"/>
            <exon e_start="46526" e_stop="45469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="0.986"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="48517" e_stop="48378" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48377" i_stop="46527" i_length="1851"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="46526" e_stop="45469" e_length="1058"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48517" stop="48378"/>
              <exon start="46526" stop="46121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48378"/>
              <exon start="46526" stop="46148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48378"/>
              <exon start="46526" stop="46211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277246" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48469" stop="48378"/>
              <exon start="46526" stop="46141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294914" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48378"/>
              <exon start="46526" stop="46254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48462" stop="48378"/>
              <exon start="46526" stop="46134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48461" stop="48378"/>
              <exon start="46526" stop="46047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48453" stop="48378"/>
              <exon start="46526" stop="46167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48451" stop="48378"/>
              <exon start="46526" stop="46230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48444" stop="48378"/>
              <exon start="46526" stop="46074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48442" stop="48378"/>
              <exon start="46526" stop="46288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46524" stop="46106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46131" stop="45469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTATATAGTTGAGCCAAAAAAAAGAGAGTGAAAGAAAAAGGAAAATCCTCAAAAAGCAAATGGGGTGCGCCTCCACTATGACTATCATTATTCTCTCTTGAAAAAAGAAATTTTCATTAATTTTTCTTTAATTCAG : GGATATTTTTCAGCTATGGAGTTAGGTGACAACAAGATTTTGAATGTGGGGTTGCTTTTAGTTGCAACCCTTTTGGTAGCAAAGCTCATATCTGCACTAATTATGCCCAGATCTAAGAAACGTTTGCCTCCAGTGGTTAAGGCATGGCCTATTGTTGGTGGGTTGATCCGTTTTCTTAAAGGGCCAGTTGTGATGCTTAGACAGGAGTATCCAAAGCTTGGGAGTGTGTTTACTCTGAATTTGTTGAACAAGAACATCACATTCTTCATTGGTCCAGAAGTTTCTGCACATTTTTTCAAAGCCCCAGAAACAGATCTTAGCCAACAAGAGGTTTATCAGTTCAATGTGCCTACCTTTGGACCTGGTGTGGTTTTTGATGTTGATTATACAATTAGGCAGGAACAGTTCAGGTTCTTTACTGAAGCTCTCAGAGTCACTAAGTTGAAGGGCTATGTAGATCAGATGGTTACAGAAGCTGAGGTATACTAAAAAAAATCTGTTATCTTTTCTTGAATTTGATTGATGACATTTAGAGTTTGTTTATTTATTAATGTTTGCTTAAGTTTTAAGTCTTTTATTACAGTGGACTCATGTCTGTGTGCTCTGATTGTGTTTCAAGATAATTTGACCTGTGTTACTGTTATTAAACGAAGAAAATGTTTATATTGGTCGCCTTAGTTGTTAAGATAATGTCCTCAGAGCTTAGAAATCTTATGTTTCTTGGACTCTCCAAAAATGTTGTCCCACTTGTGTCTGGATCCTCTAAAAATCTACTAACTTTGGAGGATCCTTCGAGCACCGGTTGAGTCTTTGAGAAGAGGTGGAAATATTTGTTTAAAGGAACTAGCATTTGCAACACCTTTTGTGTGAATTAACCAAAAGGGGGGCTTCAGTTAATCACGCATGCACTGTAAGTTTCGGTTTCACCATAGATTTTGAAGTTGAAACTTGAAAAATTGAGTTATTAAAGTAGTAATTTTTCGAACTTGAATTTGTGTTTGGACATGCGTTTTGCTTGGAATTTTTTAAACTTTTGTGAGTGAAAGCGAAATCTCTCC</gDNA_template>
            <first_frame> I  S  I  *  L  S  Q  K  K  E  S  E  R  K  R  K  I  L  K  K  Q  M  G  C  A  S  T  M  T  I  I  I  L  S  *  K  K  K  F  S  L  I  F  L  *  F  R :   D  I  F  Q  L  W  S  *  V  T  T  R  F  *  M  W  G  C  F  *  L  Q  P  F  W  *  Q  S  S  Y  L  H  *  L  C  P  D  L  R  N  V  C  L  Q  W  L  R  H  G  L  L  L  V  G  *  S  V  F  L  K  G  Q  L  *  C  L  D  R  S  I  Q  S  L  G  V  C  L  L  *  I  C  *  T  R  T  S  H  S  S  L  V  Q  K  F  L  H  I  F  S  K  P  Q  K  Q  I  L  A  N  K  R  F  I  S  S  M  C  L  P  L  D  L  V  W  F  L  M  L  I  I  Q  L  G  R  N  S  S  G  S  L  L  K  L  S  E  S  L  S  *  R  A  M  *  I  R  W  L  Q  K  L  R  Y  T  K  K  N  L  L  S  F  L  E  F  D  *  *  H  L  E  F  V  Y  L  L  M  F  A  *  V  L  S  L  L  L  Q  W  T  H  V  C  V  L  *  L  C  F  K  I  I  *  P  V  L  L  L  L  N  E  E  N  V  Y  I  G  R  L  S  C  *  D  N  V  L  R  A  *  K  S  Y  V  S  W  T  L  Q  K  C  C  P  T  C  V  W  I  L  *  K  S  T  N  F  G  G  S  F  E  H  R  L  S  L  *  E  E  V  E  I  F  V  *  R  N  *  H  L  Q  H  L  L  C  E  L  T  K  R  G  A  S  V  N  H  A  C  T  V  S  F  G  F  T  I  D  F  E  V  E  T  *  K  I  E  L  L  K  *  *  F  F  E  L  E  F  V  F  G  H  A  F  C  L  E  F  F  K  L  L  *  V  K  A  K  S  L  </first_frame>
            <second_frame>  S  L  Y  S  *  A  K  K  K  R  V  K  E  K  G  K  S  S  K  S  K  W  G  A  P  P  L  *  L  S  L  F  S  L  E  K  R  N  F  H  *  F  F  F  N  S   : G  I  F  F  S  Y  G  V  R  *  Q  Q  D  F  E  C  G  V  A  F  S  C  N  P  F  G  S  K  A  H  I  C  T  N  Y  A  Q  I  *  E  T  F  A  S  S  G  *  G  M  A  Y  C  W  W  V  D  P  F  S  *  R  A  S  C  D  A  *  T  G  V  S  K  A  W  E  C  V  Y  S  E  F  V  E  Q  E  H  H  I  L  H  W  S  R  S  F  C  T  F  F  Q  S  P  R  N  R  S  *  P  T  R  G  L  S  V  Q  C  A  Y  L  W  T  W  C  G  F  *  C  *  L  Y  N  *  A  G  T  V  Q  V  L  Y  *  S  S  Q  S  H  *  V  E  G  L  C  R  S  D  G  Y  R  S  *  G  I  L  K  K  I  C  Y  L  F  L  N  L  I  D  D  I  *  S  L  F  I  Y  *  C  L  L  K  F  *  V  F  Y  Y  S  G  L  M  S  V  C  S  D  C  V  S  R  *  F  D  L  C  Y  C  Y  *  T  K  K  M  F  I  L  V  A  L  V  V  K  I  M  S  S  E  L  R  N  L  M  F  L  G  L  S  K  N  V  V  P  L  V  S  G  S  S  K  N  L  L  T  L  E  D  P  S  S  T  G  *  V  F  E  K  R  W  K  Y  L  F  K  G  T  S  I  C  N  T  F  C  V  N  *  P  K  G  G  L  Q  L  I  T  H  A  L  *  V  S  V  S  P  *  I  L  K  L  K  L  E  K  L  S  Y  *  S  S  N  F  S  N  L  N  L  C  L  D  M  R  F  A  W  N  F  L  N  F  C  E  *  K  R  N  L  S </second_frame>
            <third_frame>   L  Y  I  V  E  P  K  K  R  E  *  K  K  K  E  N  P  Q  K  A  N  G  V  R  L  H  Y  D  Y  H  Y  S  L  L  K  K  E  I  F  I  N  F  S  L  I  Q  :  G  Y  F  S  A  M  E  L  G  D  N  K  I  L  N  V  G  L  L  L  V  A  T  L  L  V  A  K  L  I  S  A  L  I  M  P  R  S  K  K  R  L  P  P  V  V  K  A  W  P  I  V  G  G  L  I  R  F  L  K  G  P  V  V  M  L  R  Q  E  Y  P  K  L  G  S  V  F  T  L  N  L  L  N  K  N  I  T  F  F  I  G  P  E  V  S  A  H  F  F  K  A  P  E  T  D  L  S  Q  Q  E  V  Y  Q  F  N  V  P  T  F  G  P  G  V  V  F  D  V  D  Y  T  I  R  Q  E  Q  F  R  F  F  T  E  A  L  R  V  T  K  L  K  G  Y  V  D  Q  M  V  T  E  A  E  V  Y  *  K  K  S  V  I  F  S  *  I  *  L  M  T  F  R  V  C  L  F  I  N  V  C  L  S  F  K  S  F  I  T  V  D  S  C  L  C  A  L  I  V  F  Q  D  N  L  T  C  V  T  V  I  K  R  R  K  C  L  Y  W  S  P  *  L  L  R  *  C  P  Q  S  L  E  I  L  C  F  L  D  S  P  K  M  L  S  H  L  C  L  D  P  L  K  I  Y  *  L  W  R  I  L  R  A  P  V  E  S  L  R  R  G  G  N  I  C  L  K  E  L  A  F  A  T  P  F  V  *  I  N  Q  K  G  G  F  S  *  S  R  M  H  C  K  F  R  F  H  H  R  F  *  S  *  N  L  K  N  *  V  I  K  V  V  I  F  R  T  *  I  C  V  W  T  C  V  L  L  G  I  F  *  T  F  V  S  E  S  E  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48482" stop="48378"/>
                    <exon start="46526" stop="46038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKENPQKANGVRLHYDYHYSLLKKEIFINFSLIQGYFSAMELGDNKILNVGLLLVATLLVAKLISALIMPRSKKRLPPVVKAWPIVGGLIRFLKGPVVMLRQEYPKLGSVFTLNLLNKNITFFIGPEVSAHFFKAPETDLSQQEVYQFNVPTFGPGVVFDVDYTIRQEQFRFFTEALRVTKLKGYVDQMVTEAEVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="44070" PGL_stop="45260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44070" e_stop="45260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44070" e_stop="45260" e_length="1191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44070" stop="44836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44133" stop="44614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44138" stop="44910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44829" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTATTGTTAGTGAGAATATGATAAAATCCAATGGAAGAAAACACAAACTAATGTAAAACATCATACTCTAATAATATAATCTTAGTCATTGCAATCTTCAAGAGAAACAGGACTAACATTAAACATAGAAGTCAACATTAAACAAGAAATAAGGTTTAACAAACCAACATAAATGATCTTAAACTACCACATTCATGCAGATGTTATCTGCTTATTCAACAGAGAGCTTTCGGCGCTTGTACTTCACCATTACTTCCCCTTTGACACCGACAACCATAGCGTTCCAGTCAATTTCAGGGAAAGGCGAGATCAGTTCAAACTCGAAATTTCTCAGCAAGTGACTCCATATTGCTTTAATCTGCAGATAAGCAAATGGTTCTCCAAGACAACCATGTCTGCCTCCACCAAAAGAAATATATGAGAATGCTCCTGCAGCCTTATCTTCTTCTCTACCAGGGCCGAACCTATCAGGGTCGTAAGTATCTGGATTCTTGAAGATATGTGGCAGCCTGTTTGCAAAAGCAGGTGAGGTTGCAACGATATGTCCCTTGGGAATGTCATACTCTTTTCCTTCTCTGGTTGTAACACTGAATTCGCTATGTGAACTACGCAGAAGCATTATCAGTGGAGGATGGAGTCTGAGGGCTTCCTTTATGCATCTGTAGAGGACTTCCATCTCGGAAAGGATATCGTGATCAACCTTATTCCCGTGTTTCTTCATCAGATTCTTCTGTTCATCTACAACAGCCGACATGTACTTGTCGTTGGTGAGGAGGTATGACCCTGTCCAAGTGGAAGTGATCGAACTGGTGTGCTGCCCAGCGAAAAGAGCAGCAATCAGAAGACCTGTGATCTCACCCTCTGTTGTTGGCCGTCCATCTTTGTACTTTGAGTCAATGAAGCATTGTAACATATCATTCTCTGCCTTGCCTGTACGTTTTCGAGAATTTATGATGTTTGCAAAGATCTCTGCTAGCTTCTTCCTGGCATTGTCACGTCGGCGATGGGCTGGAATTGGAAGGTAGGGAAAGATAACACTGATAGGGAGCATCCCATTGTCCAGGTCATGGAAGAGAGCAGACACATCATCAAAGAGTTTATTGCGGACCTCTTCTCCCAACAGACATCTACTAGCTGTCAATATGATAAGATGCTCCAGTTCATATTTTAGGTCTACTTCACCACTCTC</gDNA_template>
            <first_frame> T  Y  C  *  *  E  Y  D  K  I  Q  W  K  K  T  Q  T  N  V  K  H  H  T  L  I  I  *  S  *  S  L  Q  S  S  R  E  T  G  L  T  L  N  I  E  V  N  I  K  Q  E  I  R  F  N  K  P  T  *  M  I  L  N  Y  H  I  H  A  D  V  I  C  L  F  N  R  E  L  S  A  L  V  L  H  H  Y  F  P  F  D  T  D  N  H  S  V  P  V  N  F  R  E  R  R  D  Q  F  K  L  E  I  S  Q  Q  V  T  P  Y  C  F  N  L  Q  I  S  K  W  F  S  K  T  T  M  S  A  S  T  K  R  N  I  *  E  C  S  C  S  L  I  F  F  S  T  R  A  E  P  I  R  V  V  S  I  W  I  L  E  D  M  W  Q  P  V  C  K  S  R  *  G  C  N  D  M  S  L  G  N  V  I  L  F  S  F  S  G  C  N  T  E  F  A  M  *  T  T  Q  K  H  Y  Q  W  R  M  E  S  E  G  F  L  Y  A  S  V  E  D  F  H  L  G  K  D  I  V  I  N  L  I  P  V  F  L  H  Q  I  L  L  F  I  Y  N  S  R  H  V  L  V  V  G  E  E  V  *  P  C  P  S  G  S  D  R  T  G  V  L  P  S  E  K  S  S  N  Q  K  T  C  D  L  T  L  C  C  W  P  S  I  F  V  L  *  V  N  E  A  L  *  H  I  I  L  C  L  A  C  T  F  S  R  I  Y  D  V  C  K  D  L  C  *  L  L  P  G  I  V  T  S  A  M  G  W  N  W  K  V  G  K  D  N  T  D  R  E  H  P  I  V  Q  V  M  E  E  S  R  H  I  I  K  E  F  I  A  D  L  F  S  Q  Q  T  S  T  S  C  Q  Y  D  K  M  L  Q  F  I  F  *  V  Y  F  T  T  L </first_frame>
            <second_frame>  L  I  V  S  E  N  M  I  K  S  N  G  R  K  H  K  L  M  *  N  I  I  L  *  *  Y  N  L  S  H  C  N  L  Q  E  K  Q  D  *  H  *  T  *  K  S  T  L  N  K  K  *  G  L  T  N  Q  H  K  *  S  *  T  T  T  F  M  Q  M  L  S  A  Y  S  T  E  S  F  R  R  L  Y  F  T  I  T  S  P  L  T  P  T  T  I  A  F  Q  S  I  S  G  K  G  E  I  S  S  N  S  K  F  L  S  K  *  L  H  I  A  L  I  C  R  *  A  N  G  S  P  R  Q  P  C  L  P  P  P  K  E  I  Y  E  N  A  P  A  A  L  S  S  S  L  P  G  P  N  L  S  G  S  *  V  S  G  F  L  K  I  C  G  S  L  F  A  K  A  G  E  V  A  T  I  C  P  L  G  M  S  Y  S  F  P  S  L  V  V  T  L  N  S  L  C  E  L  R  R  S  I  I  S  G  G  W  S  L  R  A  S  F  M  H  L  *  R  T  S  I  S  E  R  I  S  *  S  T  L  F  P  C  F  F  I  R  F  F  C  S  S  T  T  A  D  M  Y  L  S  L  V  R  R  Y  D  P  V  Q  V  E  V  I  E  L  V  C  C  P  A  K  R  A  A  I  R  R  P  V  I  S  P  S  V  V  G  R  P  S  L  Y  F  E  S  M  K  H  C  N  I  S  F  S  A  L  P  V  R  F  R  E  F  M  M  F  A  K  I  S  A  S  F  F  L  A  L  S  R  R  R  W  A  G  I  G  R  *  G  K  I  T  L  I  G  S  I  P  L  S  R  S  W  K  R  A  D  T  S  S  K  S  L  L  R  T  S  S  P  N  R  H  L  L  A  V  N  M  I  R  C  S  S  S  Y  F  R  S  T  S  P  L   </second_frame>
            <third_frame>   L  L  L  V  R  I  *  *  N  P  M  E  E  N  T  N  *  C  K  T  S  Y  S  N  N  I  I  L  V  I  A  I  F  K  R  N  R  T  N  I  K  H  R  S  Q  H  *  T  R  N  K  V  *  Q  T  N  I  N  D  L  K  L  P  H  S  C  R  C  Y  L  L  I  Q  Q  R  A  F  G  A  C  T  S  P  L  L  P  L  *  H  R  Q  P  *  R  S  S  Q  F  Q  G  K  A  R  S  V  Q  T  R  N  F  S  A  S  D  S  I  L  L  *  S  A  D  K  Q  M  V  L  Q  D  N  H  V  C  L  H  Q  K  K  Y  M  R  M  L  L  Q  P  Y  L  L  L  Y  Q  G  R  T  Y  Q  G  R  K  Y  L  D  S  *  R  Y  V  A  A  C  L  Q  K  Q  V  R  L  Q  R  Y  V  P  W  E  C  H  T  L  F  L  L  W  L  *  H  *  I  R  Y  V  N  Y  A  E  A  L  S  V  E  D  G  V  *  G  L  P  L  C  I  C  R  G  L  P  S  R  K  G  Y  R  D  Q  P  Y  S  R  V  S  S  S  D  S  S  V  H  L  Q  Q  P  T  C  T  C  R  W  *  G  G  M  T  L  S  K  W  K  *  S  N  W  C  A  A  Q  R  K  E  Q  Q  S  E  D  L  *  S  H  P  L  L  L  A  V  H  L  C  T  L  S  Q  *  S  I  V  T  Y  H  S  L  P  C  L  Y  V  F  E  N  L  *  C  L  Q  R  S  L  L  A  S  S  W  H  C  H  V  G  D  G  L  E  L  E  G  R  E  R  *  H  *  *  G  A  S  H  C  P  G  H  G  R  E  Q  T  H  H  Q  R  V  Y  C  G  P  L  L  P  T  D  I  Y  *  L  S  I  *  *  D  A  P  V  H  I  L  G  L  L  H  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44767" stop="45096"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLFPCFFIRFFCSSTTADMYLSLVRRYDPVQVEVIELVCCPAKRAAIRRPVISPSVVGRPSLYFESMKHCNISFSALPVRFREFMMFAKISASFFLALSRRRWAGIGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44244" stop="44492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MILNYHIHADVICLFNRELSALVLHHYFPFDTDNHSVPVNFRERRDQFKLEISQQVTPYCFNLQISKWFSKTTMSASTKRNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="58418" PGL_stop="54329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58418" e_stop="58056"/>
            <exon e_start="56841" e_stop="56590"/>
            <exon e_start="54728" e_stop="54329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.593" acc_prob="0.681" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58418" e_stop="58056" e_length="363"/>
          </exon>
          <intron i_serial="1" don_prob="0.593" acc_prob="0.681">
            <gDNA_intron_boundary i_start="58055" i_stop="56842" i_length="1214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56841" e_stop="56590" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="56589" i_stop="54729" i_length="1861"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54728" e_stop="54329" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58418" stop="58056"/>
              <exon start="56841" stop="56590"/>
              <exon start="54728" stop="54443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58412" stop="58056"/>
              <exon start="56841" stop="56590"/>
              <exon start="54728" stop="54548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58405" stop="58056"/>
              <exon start="56841" stop="56590"/>
              <exon start="54728" stop="54548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58392" stop="58056"/>
              <exon start="56841" stop="56590"/>
              <exon start="54728" stop="54659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58317" stop="58056"/>
              <exon start="56841" stop="56590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56692" stop="56590"/>
              <exon start="54728" stop="54329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAACCATCCAAAGAGAGTGTCACTTAAAAACTACACATTTTTCCCCTTCTTTGAGCCTTTATCTTCTCCACAGAGAGCAAATTTACAACCGCCATCGCAAAATTTCGAGGAAATTTCAGGTCGAGTATGAAGAAGAGTACGGTGTCGCCGACGTCTGTACTATTCGTTGTTGCCGCAATACTAATTTCTTACTACTCCGATGTCTCGTCGGCAAAATCAGATTCAGACCCAACGCCGGCTCCATGGCCTCATCAATTCCACTCGATACTGTTCGTCAATTTCAGCGGATCTCTAAGCCTAATCGATCTCTGGTACGATTGGACCAATGGCCGCAATTTCAACATCATACAAGACCAGCTAG : GTGAGCTTCTCTATGATCTCGAATGGAACAATGGCACTGTGTTCCGCTACACTCTAGACGATGGTAAGAAGAAATGCAGTTCAGCGCTGGTTGATGTTGGTATTCTTCGACCAAATTGGCTTGACGGAGCTACTTATCTTGGTCAACAGTTCATCGATGGATTTCACTGTAATGTATGGCAGAAGGTGGATTTCATTTGGTATTATGAAGACATCGTCACAAAGAGACCCGTCCATTGGGTTTTCTATACTG : GAAGGTCTATTCACGTAATGACTTTCGAAGTGGGAGCAGTTCTCGAGGACATAAAATGGCAAGCCCCTGTATATTGTTTCGACAAAAAACAGGTTCAAGATCACCCTGCATCAGACAACGATATTCTGGAAATTGGCTCGAAAGGTACTTTAAGAGAGTTCATATAGCCGCGCAATTTACGTAAATAGCTCAGCTAGATGTTCTTAGTAATGTAAAAGTATTTGCCTTGTCTTGCTGCCTCTGCATCAGTTTCATCTCCTTATGTATTGAAAAACAGTTGATGCCATCAGTGTTGTGTATTGCAATAACCTATGTTGCTCGAACTGTTCATAAATGGTGATGGGGTATGTCGGATCCTCCAACAGTAGTACAGTTTTAGAGGATCTTGCACATATGTGAC</gDNA_template>
            <first_frame> Y  N  H  P  K  R  V  S  L  K  N  Y  T  F  F  P  F  F  E  P  L  S  S  P  Q  R  A  N  L  Q  P  P  S  Q  N  F  E  E  I  S  G  R  V  *  R  R  V  R  C  R  R  R  L  Y  Y  S  L  L  P  Q  Y  *  F  L  T  T  P  M  S  R  R  Q  N  Q  I  Q  T  Q  R  R  L  H  G  L  I  N  S  T  R  Y  C  S  S  I  S  A  D  L  *  A  *  S  I  S  G  T  I  G  P  M  A  A  I  S  T  S  Y  K  T  S  *  :  V  S  F  S  M  I  S  N  G  T  M  A  L  C  S  A  T  L  *  T  M  V  R  R  N  A  V  Q  R  W  L  M  L  V  F  F  D  Q  I  G  L  T  E  L  L  I  L  V  N  S  S  S  M  D  F  T  V  M  Y  G  R  R  W  I  S  F  G  I  M  K  T  S  S  Q  R  D  P  S  I  G  F  S  I  L  :  E  G  L  F  T  *  *  L  S  K  W  E  Q  F  S  R  T  *  N  G  K  P  L  Y  I  V  S  T  K  N  R  F  K  I  T  L  H  Q  T  T  I  F  W  K  L  A  R  K  V  L  *  E  S  S  Y  S  R  A  I  Y  V  N  S  S  A  R  C  S  *  *  C  K  S  I  C  L  V  L  L  P  L  H  Q  F  H  L  L  M  Y  *  K  T  V  D  A  I  S  V  V  Y  C  N  N  L  C  C  S  N  C  S  *  M  V  M  G  Y  V  G  S  S  N  S  S  T  V  L  E  D  L  A  H  M  *  </first_frame>
            <second_frame>  T  T  I  Q  R  E  C  H  L  K  T  T  H  F  S  P  S  L  S  L  Y  L  L  H  R  E  Q  I  Y  N  R  H  R  K  I  S  R  K  F  Q  V  E  Y  E  E  E  Y  G  V  A  D  V  C  T  I  R  C  C  R  N  T  N  F  L  L  L  R  C  L  V  G  K  I  R  F  R  P  N  A  G  S  M  A  S  S  I  P  L  D  T  V  R  Q  F  Q  R  I  S  K  P  N  R  S  L  V  R  L  D  Q  W  P  Q  F  Q  H  H  T  R  P  A  R :   *  A  S  L  *  S  R  M  E  Q  W  H  C  V  P  L  H  S  R  R  W  *  E  E  M  Q  F  S  A  G  *  C  W  Y  S  S  T  K  L  A  *  R  S  Y  L  S  W  S  T  V  H  R  W  I  S  L  *  C  M  A  E  G  G  F  H  L  V  L  *  R  H  R  H  K  E  T  R  P  L  G  F  L  Y  W :   K  V  Y  S  R  N  D  F  R  S  G  S  S  S  R  G  H  K  M  A  S  P  C  I  L  F  R  Q  K  T  G  S  R  S  P  C  I  R  Q  R  Y  S  G  N  W  L  E  R  Y  F  K  R  V  H  I  A  A  Q  F  T  *  I  A  Q  L  D  V  L  S  N  V  K  V  F  A  L  S  C  C  L  C  I  S  F  I  S  L  C  I  E  K  Q  L  M  P  S  V  L  C  I  A  I  T  Y  V  A  R  T  V  H  K  W  *  W  G  M  S  D  P  P  T  V  V  Q  F  *  R  I  L  H  I  C  D </second_frame>
            <third_frame>   Q  P  S  K  E  S  V  T  *  K  L  H  I  F  P  L  L  *  A  F  I  F  S  T  E  S  K  F  T  T  A  I  A  K  F  R  G  N  F  R  S  S  M  K  K  S  T  V  S  P  T  S  V  L  F  V  V  A  A  I  L  I  S  Y  Y  S  D  V  S  S  A  K  S  D  S  D  P  T  P  A  P  W  P  H  Q  F  H  S  I  L  F  V  N  F  S  G  S  L  S  L  I  D  L  W  Y  D  W  T  N  G  R  N  F  N  I  I  Q  D  Q  L   : G  E  L  L  Y  D  L  E  W  N  N  G  T  V  F  R  Y  T  L  D  D  G  K  K  K  C  S  S  A  L  V  D  V  G  I  L  R  P  N  W  L  D  G  A  T  Y  L  G  Q  Q  F  I  D  G  F  H  C  N  V  W  Q  K  V  D  F  I  W  Y  Y  E  D  I  V  T  K  R  P  V  H  W  V  F  Y  T   : G  R  S  I  H  V  M  T  F  E  V  G  A  V  L  E  D  I  K  W  Q  A  P  V  Y  C  F  D  K  K  Q  V  Q  D  H  P  A  S  D  N  D  I  L  E  I  G  S  K  G  T  L  R  E  F  I  *  P  R  N  L  R  K  *  L  S  *  M  F  L  V  M  *  K  Y  L  P  C  L  A  A  S  A  S  V  S  S  P  Y  V  L  K  N  S  *  C  H  Q  C  C  V  L  Q  *  P  M  L  L  E  L  F  I  N  G  D  G  V  C  R  I  L  Q  Q  *  Y  S  F  R  G  S  C  T  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58362" stop="58056"/>
                    <exon start="56841" stop="56590"/>
                    <exon start="54728" stop="54562"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFIFSTESKFTTAIAKFRGNFRSSMKKSTVSPTSVLFVVAAILISYYSDVSSAKSDSDPTPAPWPHQFHSILFVNFSGSLSLIDLWYDWTNGRNFNIIQDQLGELLYDLEWNNGTVFRYTLDDGKKKCSSALVDVGILRPNWLDGATYLGQQFIDGFHCNVWQKVDFIWYYEDIVTKRPVHWVFYTGRSIHVMTFEVGAVLEDIKWQAPVYCFDKKQVQDHPASDNDILEIGSKGTLREFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61373" PGL_stop="65269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61373" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="62112"/>
            <exon e_start="63187" e_stop="63502"/>
            <exon e_start="64680" e_stop="64694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61373" e_stop="61461" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62084" e_stop="62112" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.955">
            <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63187" e_stop="63502" e_length="316"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="63503" i_stop="64679" i_length="1177"/>
          </intron>
          <exon e_serial="5" e_score="0.533">
            <gDNA_exon_boundary e_start="64680" e_stop="64694" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61373" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61376" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61380" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61381" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61383" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61383" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61383" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63502"/>
              <exon start="64680" stop="64694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61385" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61386" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61390" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61393" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61394" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61396" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61912" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63502"/>
              <exon start="64680" stop="64694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61924" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63502"/>
              <exon start="64680" stop="64694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63289" stop="63494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACAT : AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACT : GTGAACCAAATAAAC</gDNA_template>
            <first_frame> Y  R  F  Q  R  L  H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T   : *  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N  S  L  W  I  L  N  L  C  Y  V  L  D  L  C  C  A  S  L :   *  T  K  *   </first_frame>
            <second_frame>  T  A  S  S  V  F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  :  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  H  S  G  F  *  I  Y  A  M  Y  *  I  F  V  V  P  H   : C  E  P  N  K  </second_frame>
            <third_frame>   P  L  P  A  S  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F  T  L  D  F  E  F  M  L  C  I  R  S  L  L  C  L  T  :  V  N  Q  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61375" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62112"/>
                    <exon start="63187" stop="63313"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLPASSSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61373" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="62112"/>
            <exon e_start="63187" e_stop="63533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61373" e_stop="61461" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62084" e_stop="62112" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.955">
            <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="63187" e_stop="63533" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61373" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61376" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61380" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61381" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61383" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61383" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61383" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61385" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61386" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61388" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61390" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61393" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61394" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61396" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61400" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61919" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63289" stop="63494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCGCTTCCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACAT : AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGTGCCTCACTGTATTTTCCCCATCAATTTTCCAACTCCTTG</gDNA_template>
            <first_frame> Y  R  F  Q  R  L  H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T   : *  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N  S  L  W  I  L  N  L  C  Y  V  L  D  L  C  C  A  S  L  Y  F  P  H  Q  F  S  N  S  L </first_frame>
            <second_frame>  T  A  S  S  V  F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  :  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  H  S  G  F  *  I  Y  A  M  Y  *  I  F  V  V  P  H  C  I  F  P  I  N  F  P  T  P   </second_frame>
            <third_frame>   P  L  P  A  S  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F  T  L  D  F  E  F  M  L  C  I  R  S  L  L  C  L  T  V  F  S  P  S  I  F  Q  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61375" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62112"/>
                    <exon start="63187" stop="63313"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLPASSSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61384" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="62112"/>
            <exon e_start="63187" e_stop="63450"/>
            <exon e_start="64680" e_stop="64693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61384" e_stop="61461" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62084" e_stop="62112" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.955">
            <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63187" e_stop="63450" e_length="264"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="63451" i_stop="64679" i_length="1229"/>
          </intron>
          <exon e_serial="5" e_score="0.571">
            <gDNA_exon_boundary e_start="64680" e_stop="64693" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63450"/>
              <exon start="64680" stop="64693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61384" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63502"/>
              <exon start="64680" stop="64693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61385" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61390" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61393" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61396" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACAT : AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATT : GTGAACCAAATAAA</gDNA_template>
            <first_frame> A  S  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  L :   *  T  K  *  </first_frame>
            <second_frame>  R  L  H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T   : *  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N   : C  E  P  N  K </second_frame>
            <third_frame>   V  F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  :  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  :  V  N  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61384" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62112"/>
                    <exon start="63187" stop="63313"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="61381" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="62112"/>
            <exon e_start="63187" e_stop="63451"/>
            <exon e_start="65226" e_stop="65269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61381" e_stop="61461" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62084" e_stop="62112" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.955">
            <gDNA_intron_boundary i_start="62113" i_stop="63186" i_length="1074"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63187" e_stop="63451" e_length="265"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63452" i_stop="65225" i_length="1774"/>
          </intron>
          <exon e_serial="5" e_score="0.636">
            <gDNA_exon_boundary e_start="65226" e_stop="65269" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61381" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63451"/>
              <exon start="65226" stop="65269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61385" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61390" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61393" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61395" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61396" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61401" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62112"/>
              <exon start="63187" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGCGTCTTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACAT : AACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTC : CTAATAAAATTTAAGAATTATACACCAAAAAAGGAAAAAAATTA</gDNA_template>
            <first_frame> P  A  S  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F  :  L  I  K  F  K  N  Y  T  P  K  K  E  K  N   </first_frame>
            <second_frame>  Q  R  L  H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T   : *  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N  S :   *  *  N  L  R  I  I  H  Q  K  R  K  K  I  </second_frame>
            <third_frame>   S  V  F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  :  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I   : P  N  K  I  *  E  L  Y  T  K  K  G  K  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61381" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62112"/>
                    <exon start="63187" stop="63313"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PASSSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="62069" e_stop="63494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="62069" e_stop="63494" e_length="1426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62069" stop="62597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62069" stop="62371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62086" stop="62562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62086" stop="62555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62118" stop="62832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62769" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63289" stop="63494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGTGTTGTTTAGGATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGT</gDNA_template>
            <first_frame> C  C  V  V  *  D  V  K  C  Q  G  C  F  N  M  *  V  F  L  F  V  H  L  S  *  F  G  A  F  D  L  N  L  V  I  F  R  T  K  Y  *  Y  L  K  L  R  Y  G  *  W  R  S  K  V  D  E  F  S  D  I  W  N  V  V  V  F  E  I  E  K  W  *  Y  L  K  I  K  V  D  Q  L  S  D  I  L  E  L  R  K  S  R  I  F  E  V  E  I  W  L  M  E  K  *  S  R  *  I  *  *  Y  L  E  R  C  S  V  *  D  *  R  M  I  F  E  N  *  S  *  S  T  W  *  Y  F  Q  T  *  K  K  *  Y  S  *  S  *  D  M  V  N  G  K  *  S  *  S  I  *  *  Y  F  R  I  *  K  K  E  V  Y  L  K  L  K  Y  S  I  W  *  L  K  L  G  K  K  *  S  *  R  M  V  D  D  K  *  S  *  *  I  H  *  Y  P  I  I  S  S  I  *  S  W  K  T  S  *  E  N  S  S  L  K  F  I  R  K  I  I  L  I  Y  T  T  K  E  *  L  K  C  F  L  Y  K  R  K  R  T  S  P  N  R  V  G  S  A  *  *  T  S  *  L  T  S  V  E  R  L  Y  N  *  P  R  *  L  L  T  E  S  R  K  Y  M  N  T  T  *  I  F  E  E  G  P  E  L  G  S  V  *  *  T  S  *  L  T  S  E  E  V  I  Y  E  F  F  C  *  A  K  I  V  V  A  Y  G  K  *  K  V  Y  E  H  E  L  N  L  *  G  K  D  L  S  L  V  Q  F  R  F  D  P  Q  *  H  L  S  Y  *  F  L  S  Y  K  Y  N  *  D  R  F  S  V  S  F  S  L  Y  V  C  R  T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F  T  L  D  F  E  F  M  L  C  I  R  S  L  L  </first_frame>
            <second_frame>  A  V  L  F  R  M  *  S  A  R  V  A  S  T  C  K  F  F  F  L  F  I  Y  L  S  L  V  L  L  T  *  I  *  *  Y  L  E  P  S  T  D  I  *  S  *  D  M  V  N  G  E  V  K  L  M  N  L  V  I  F  G  T  *  *  Y  L  R  L  K  N  G  S  I  *  K  L  K  L  I  N  L  V  I  F  *  N  L  E  K  V  E  Y  L  K  L  R  Y  G  *  W  R  S  K  V  D  E  F  S  D  I  W  N  V  V  A  F  E  I  E  E  *  Y  L  K  I  E  V  D  Q  L  G  N  I  F  K  L  R  K  S  S  I  V  E  V  K  I  W  L  M  E  S  K  V  D  Q  F  S  D  I  L  E  F  R  K  K  K  Y  I  *  S  *  N  I  V  F  G  D  *  S  L  E  K  S  R  V  E  E  W  L  M  I  S  K  V  D  E  F  I  N  I  P  *  *  V  V  F  E  A  G  K  Q  V  R  R  T  H  P  *  N  L  S  E  K  S  F  *  F  I  Q  P  K  N  N  *  N  A  F  C  I  K  G  N  E  L  L  Q  T  E  L  V  V  L  D  E  P  V  S  *  R  L  *  R  D  Y  I  I  N  Q  D  S  C  L  R  K  V  E  S  I  *  T  R  P  E  S  L  R  K  D  L  S  *  V  V  F  D  E  P  V  S  *  R  L  K  R  L  Y  M  N  S  S  V  K  P  R  *  *  S  P  T  E  S  R  K  Y  M  N  T  N  *  I  F  E  V  R  T  *  V  W  F  S  S  D  L  T  L  N  N  I  F  H  I  S  F  C  R  T  N  I  T  R  I  A  S  Q  S  L  S  L  Y  M  C  A  E  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N  S  L  W  I  L  N  L  C  Y  V  L  D  L  C  C </second_frame>
            <third_frame>   L  C  C  L  G  C  E  V  P  G  L  L  Q  H  V  S  F  S  F  C  S  F  I  L  V  W  C  F  *  L  E  F  S  D  I  *  N  Q  V  L  I  F  E  V  E  I  W  L  M  E  K  *  S  *  *  I  *  *  Y  L  E  R  S  S  I  *  D  *  K  M  V  V  F  E  N  *  S  *  S  T  *  *  Y  F  R  T  *  K  K  *  N  I  *  S  *  D  M  V  N  G  E  V  K  S  M  N  L  V  I  F  G  T  L  *  R  L  R  L  K  N  D  I  *  K  L  K  L  I  N  L  V  I  F  S  N  L  E  K  V  V  *  L  K  L  R  Y  G  *  W  K  V  K  L  I  N  L  V  I  F  *  N  L  E  K  R  S  I  F  E  V  E  I  *  Y  L  V  I  K  A  W  K  K  V  E  L  K  N  G  *  *  *  V  K  L  M  N  S  L  I  S  H  N  K  *  Y  L  K  L  E  N  K  L  G  E  L  I  L  E  I  Y  P  K  N  H  S  N  L  Y  N  Q  R  I  I  K  M  L  F  V  *  K  E  T  N  F  S  K  Q  S  W  *  C  L  M  N  Q  L  V  D  V  C  R  E  I  I  *  L  T  K  I  V  A  Y  G  K  *  K  V  Y  E  H  D  L  N  L  *  G  R  T  *  V  R  *  C  L  M  N  Q  L  V  D  V  *  R  G  Y  I  *  I  L  L  L  S  Q  D  S  S  R  L  R  K  V  E  S  I  *  T  R  T  E  S  L  R  *  G  P  E  F  G  S  V  P  I  *  P  S  I  T  S  F  I  L  V  S  V  V  Q  I  *  L  G  S  L  L  S  L  F  L  S  I  C  V  Q  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  H  S  G  F  *  I  Y  A  M  Y  *  I  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63078" stop="63329"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFSSDLTLNNIFHISFCRTNITRIASQSLSLYMCAEQRCSATRRLLWFAVTARRSCASQLVGVLDSPRVVLSGEREIREEQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="61389" e_stop="61461"/>
            <exon e_start="61863" e_stop="61964"/>
            <exon e_start="62084" e_stop="63494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61389" e_stop="61461" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61462" i_stop="61862" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61863" e_stop="61964" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61965" i_stop="62083" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="62084" e_stop="63494" e_length="1411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61389" stop="61461"/>
              <exon start="61863" stop="61964"/>
              <exon start="62084" stop="62618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62086" stop="62562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62086" stop="62555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62118" stop="62832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62769" stop="63452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63258" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63259" stop="63447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63289" stop="63494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATCTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCTGCCGGCCGGAATTTCCTGTTAACCTCGCGAAAATG : GTTCTTCCAAATGATGTTGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTCAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTCAACATGTAAGTTTTTCTTTTTGTTCATTTATCTTAGTTTGGTGCTTTTGACTTGAATTTAGTGATATTTAGAACCAAGTACTGATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTTGATGAATTTAGTGATATTTGGAACGTAGTAGTATTTGAGATTGAAAAATGGTAGTATTTGAAAATTAAAGTTGATCAACTTAGTGATATTTTAGAACTTAGAAAAAGTAGAATATTTGAAGTTGAGATATGGTTAATGGAGAAGTAAAGTCGATGAATTTAGTGATATTTGGAACGTTGTAGCGTTTGAGATTGAAGAATGATATTTGAAAATTGAAGTTGATCAACTTGGTAATATTTTCAAACTTAGAAAAAGTAGTATAGTTGAAGTTAAGATATGGTTAATGGAAAGTAAAGTTGATCAATTTAGTGATATTTTAGAATTTAGAAAAAAGAAGTATATTTGAAGTTGAAATATAGTATTTGGTGATTAAAGCTTGGAAAAAAGTAGAGTTGAAGAATGGTTGATGATAAGTAAAGTTGATGAATTCATTAATATCCCATAATAAGTAGTATTTGAAGCTGGAAAACAAGTTAGGAGAACTCATCCTTGAAATTTATCCGAAAAATCATTCTAATTTATACAACCAAAGAATAATTAAAATGCTTTTTGTATAAAAGGAAACGAACTTCTCCAAACAGAGTTGGTAGTGCTTGATGAACCAGTTAGTTGACGTCTGTAGAGAGATTATATAATTAACCAAGATAGTTGCTTACGGAAAGTAGAAAGTATATGAACACGACCTGAATCTTTGAGGAAGGACCTGAGTTAGGTAGTGTTTGATGAACCAGTTAGTTGACGTCTGAAGAGGTTATATATGAATTCTTCTGTTAAGCCAAGATAGTAGTCGCCTACGGAAAGTAGAAAGTATATGAACACGAACTGAATCTTTGAGGTAAGGACCTGAGTTTGGTTCAGTTCCGATTTGACCCTCAATAACATCTTTCATATTAGTTTCTGTCGTACAAATATAACTAGGATCGCTTCTCAGTCTCTTTCTCTCTATATGTGTGCAGAACAACGGTGTTCAGCCACTCGCAGACTGTTGTGGTTTGCGGTAACTGCCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGAACAGAAGTGATAAAGTTAATATGGGTGACAAATTAAGTTTTGGTGTAATCCTGTTTTTGTTTTAGAACAAAGGATTTTGGATTTACAATGACTTGTTATGTTATGTTTTTCAATTAAATTGGGTTTCAATTCACTCTGGATTTTGAATTTATGCTATGTATTAGATCTTTGTTGT</gDNA_template>
            <first_frame> F  I  S  A  A  S  D  A  L  P  P  S  L  P  A  G  I  S  C  *  P  R  E  N   : G  S  S  K  *  C  *  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  Q  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  Q  H  V  S  F  S  F  C  S  F  I  L  V  W  C  F  *  L  E  F  S  D  I  *  N  Q  V  L  I  F  E  V  E  I  W  L  M  E  K  *  S  *  *  I  *  *  Y  L  E  R  S  S  I  *  D  *  K  M  V  V  F  E  N  *  S  *  S  T  *  *  Y  F  R  T  *  K  K  *  N  I  *  S  *  D  M  V  N  G  E  V  K  S  M  N  L  V  I  F  G  T  L  *  R  L  R  L  K  N  D  I  *  K  L  K  L  I  N  L  V  I  F  S  N  L  E  K  V  V  *  L  K  L  R  Y  G  *  W  K  V  K  L  I  N  L  V  I  F  *  N  L  E  K  R  S  I  F  E  V  E  I  *  Y  L  V  I  K  A  W  K  K  V  E  L  K  N  G  *  *  *  V  K  L  M  N  S  L  I  S  H  N  K  *  Y  L  K  L  E  N  K  L  G  E  L  I  L  E  I  Y  P  K  N  H  S  N  L  Y  N  Q  R  I  I  K  M  L  F  V  *  K  E  T  N  F  S  K  Q  S  W  *  C  L  M  N  Q  L  V  D  V  C  R  E  I  I  *  L  T  K  I  V  A  Y  G  K  *  K  V  Y  E  H  D  L  N  L  *  G  R  T  *  V  R  *  C  L  M  N  Q  L  V  D  V  *  R  G  Y  I  *  I  L  L  L  S  Q  D  S  S  R  L  R  K  V  E  S  I  *  T  R  T  E  S  L  R  *  G  P  E  F  G  S  V  P  I  *  P  S  I  T  S  F  I  L  V  S  V  V  Q  I  *  L  G  S  L  L  S  L  F  L  S  I  C  V  Q  N  N  G  V  Q  P  L  A  D  C  C  G  L  R  *  L  P  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  N  R  S  D  K  V  N  M  G  D  K  L  S  F  G  V  I  L  F  L  F  *  N  K  G  F  W  I  Y  N  D  L  L  C  Y  V  F  Q  L  N  W  V  S  I  H  S  G  F  *  I  Y  A  M  Y  *  I  F  V   </first_frame>
            <second_frame>  S  S  Q  L  P  P  T  L  F  L  P  R  C  R  P  E  F  P  V  N  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  M  *  V  F  L  F  V  H  L  S  *  F  G  A  F  D  L  N  L  V  I  F  R  T  K  Y  *  Y  L  K  L  R  Y  G  *  W  R  S  K  V  D  E  F  S  D  I  W  N  V  V  V  F  E  I  E  K  W  *  Y  L  K  I  K  V  D  Q  L  S  D  I  L  E  L  R  K  S  R  I  F  E  V  E  I  W  L  M  E  K  *  S  R  *  I  *  *  Y  L  E  R  C  S  V  *  D  *  R  M  I  F  E  N  *  S  *  S  T  W  *  Y  F  Q  T  *  K  K  *  Y  S  *  S  *  D  M  V  N  G  K  *  S  *  S  I  *  *  Y  F  R  I  *  K  K  E  V  Y  L  K  L  K  Y  S  I  W  *  L  K  L  G  K  K  *  S  *  R  M  V  D  D  K  *  S  *  *  I  H  *  Y  P  I  I  S  S  I  *  S  W  K  T  S  *  E  N  S  S  L  K  F  I  R  K  I  I  L  I  Y  T  T  K  E  *  L  K  C  F  L  Y  K  R  K  R  T  S  P  N  R  V  G  S  A  *  *  T  S  *  L  T  S  V  E  R  L  Y  N  *  P  R  *  L  L  T  E  S  R  K  Y  M  N  T  T  *  I  F  E  E  G  P  E  L  G  S  V  *  *  T  S  *  L  T  S  E  E  V  I  Y  E  F  F  C  *  A  K  I  V  V  A  Y  G  K  *  K  V  Y  E  H  E  L  N  L  *  G  K  D  L  S  L  V  Q  F  R  F  D  P  Q  *  H  L  S  Y  *  F  L  S  Y  K  Y  N  *  D  R  F  S  V  S  F  S  L  Y  V  C  R  T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  R  T  E  V  I  K  L  I  W  V  T  N  *  V  L  V  *  S  C  F  C  F  R  T  K  D  F  G  F  T  M  T  C  Y  V  M  F  F  N  *  I  G  F  Q  F  T  L  D  F  E  F  M  L  C  I  R  S  L  L  </second_frame>
            <third_frame>   H  L  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  L  L  T  S  R  K  W :   F  F  Q  M  M  L  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  S  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  S  T  C  K  F  F  F  L  F  I  Y  L  S  L  V  L  L  T  *  I  *  *  Y  L  E  P  S  T  D  I  *  S  *  D  M  V  N  G  E  V  K  L  M  N  L  V  I  F  G  T  *  *  Y  L  R  L  K  N  G  S  I  *  K  L  K  L  I  N  L  V  I  F  *  N  L  E  K  V  E  Y  L  K  L  R  Y  G  *  W  R  S  K  V  D  E  F  S  D  I  W  N  V  V  A  F  E  I  E  E  *  Y  L  K  I  E  V  D  Q  L  G  N  I  F  K  L  R  K  S  S  I  V  E  V  K  I  W  L  M  E  S  K  V  D  Q  F  S  D  I  L  E  F  R  K  K  K  Y  I  *  S  *  N  I  V  F  G  D  *  S  L  E  K  S  R  V  E  E  W  L  M  I  S  K  V  D  E  F  I  N  I  P  *  *  V  V  F  E  A  G  K  Q  V  R  R  T  H  P  *  N  L  S  E  K  S  F  *  F  I  Q  P  K  N  N  *  N  A  F  C  I  K  G  N  E  L  L  Q  T  E  L  V  V  L  D  E  P  V  S  *  R  L  *  R  D  Y  I  I  N  Q  D  S  C  L  R  K  V  E  S  I  *  T  R  P  E  S  L  R  K  D  L  S  *  V  V  F  D  E  P  V  S  *  R  L  K  R  L  Y  M  N  S  S  V  K  P  R  *  *  S  P  T  E  S  R  K  Y  M  N  T  N  *  I  F  E  V  R  T  *  V  W  F  S  S  D  L  T  L  N  N  I  F  H  I  S  F  C  R  T  N  I  T  R  I  A  S  Q  S  L  S  L  Y  M  C  A  E  Q  R  C  S  A  T  R  R  L  L  W  F  A  V  T  A  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  E  Q  K  *  *  S  *  Y  G  *  Q  I  K  F  W  C  N  P  V  F  V  L  E  Q  R  I  L  D  L  Q  *  L  V  M  L  C  F  S  I  K  L  G  F  N  S  L  W  I  L  N  L  C  Y  V  L  D  L  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63078" stop="63329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFSSDLTLNNIFHISFCRTNITRIASQSLSLYMCAEQRCSATRRLLWFAVTARRSCASQLVGVLDSPRVVLSGEREIREEQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61390" stop="61461"/>
                    <exon start="61863" stop="61964"/>
                    <exon start="62084" stop="62116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQLPPTLFLPRCRPEFPVNLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="65396" PGL_stop="71466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65396" e_stop="65500"/>
            <exon e_start="66453" e_stop="66554"/>
            <exon e_start="66644" e_stop="66672"/>
            <exon e_start="67320" e_stop="67714"/>
            <exon e_start="68273" e_stop="68296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.901" e_score="0.989"/>
          <exon-intron don_prob="0.732" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="65396" e_stop="65500" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.901">
            <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66453" e_stop="66554" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.880">
            <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66644" e_stop="66672" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67320" e_stop="67714" e_length="395"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67715" i_stop="68272" i_length="558"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="68273" e_stop="68296" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65396" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65401" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65410" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67714"/>
              <exon start="68273" stop="68296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65413" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65428" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65428" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65433" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65433" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65436" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65438" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65439" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65439" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65441" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65449" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65450" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65474" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65475" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66504" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66517" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66520" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66529" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67332" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67374" stop="67692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67374" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67393" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAAACCCTAGAATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG : GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTTAACAT : AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTAC : AAACAGAAAATACCAAAAAGTTTA</gDNA_template>
            <first_frame> R  K  N  P  R  I  S  L  P  A  S  S  F  Q  L  P  P  T  L  F  L  P  R  R  R  P  E  F  P  V  Y  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  S  N  R  Q  L  F  A  F  R  V  G  S  *  K  S  L  Y  G  *  Q  S  Q  F  W  C  I  L  A  F  P  F  L  I  F  *  R  T  K  D  F  *  F  T  M  S  G  F  V  M  F  F  N  *  I  G  F  R  F  T  Y  G  F  *  I  L  L  Y  I  S  S  M  F  Y  L  Q  Y  S  H  Q  L  L  *  S  T  *  *  M  L   : Q  T  E  N  T  K  K  F  </first_frame>
            <second_frame>  E  K  T  L  E  Y  L  F  Q  R  L  H  F  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  P  F  T  S  R  K  W :   F  F  Q  T  M  S  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  L  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  L  T   : *  Q  R  C  S  A  T  R  K  L  W  W  C  A  G  T  V  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  V  T  G  N  Y  L  L  L  E  W  E  V  K  K  V  Y  M  G  N  K  V  S  F  G  V  S  W  L  F  L  F  *  S  F  K  E  Q  R  I  F  S  L  P  C  L  V  L  L  C  F  S  I  K  L  G  F  D  S  L  M  D  F  E  F  C  Y  I  L  A  L  C  S  T  Y  N  I  P  I  N  Y  F  E  V  L  D  R  C  Y  :  K  Q  K  I  P  K  S  L </second_frame>
            <third_frame>   K  K  P  *  N  I  S  S  S  V  F  I  S  A  A  S  D  A  L  P  P  S  P  P  A  G  I  S  R  L  P  R  E  N   : G  S  S  K  R  C  R  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  *  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  *  H  :  N  N  G  V  Q  P  L  A  N  C  G  G  V  R  E  L  S  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  *  Q  A  I  I  C  F  *  S  G  K  L  K  K  F  I  W  V  T  K  S  V  L  V  Y  P  G  F  S  F  F  D  L  L  K  N  K  G  F  L  V  Y  H  V  W  F  C  Y  V  F  Q  L  N  W  V  S  I  H  L  W  I  L  N  F  A  I  Y  *  L  Y  V  L  P  T  I  F  P  S  I  T  L  K  Y  L  I  D  V  T :   N  R  K  Y  Q  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65396" stop="65500"/>
                    <exon start="66453" stop="66554"/>
                    <exon start="66644" stop="66672"/>
                    <exon start="67320" stop="67446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKNPRISLPASSFQLPPTLFLPRRRPEFPVYLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67547" stop="67714"/>
                    <exon start="68273" stop="68296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFKEQRIFSLPCLVLLCFSIKLGFDSLMDFEFCYILALCSTYNIPINYFEVLDRCYKQKIPKSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65396" e_stop="65500"/>
            <exon e_start="66453" e_stop="66554"/>
            <exon e_start="66644" e_stop="66672"/>
            <exon e_start="67320" e_stop="67714"/>
            <exon e_start="68040" e_stop="68047"/>
            <exon e_start="68269" e_stop="68305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.901" e_score="0.989"/>
          <exon-intron don_prob="0.732" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.671" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.595"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="65396" e_stop="65500" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.901">
            <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66453" e_stop="66554" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.880">
            <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66644" e_stop="66672" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67320" e_stop="67714" e_length="395"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.671">
            <gDNA_intron_boundary i_start="67715" i_stop="68039" i_length="325"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="68040" e_stop="68047" e_length="8"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68048" i_stop="68268" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.595">
            <gDNA_exon_boundary e_start="68269" e_stop="68305" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65396" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65401" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65413" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65424" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67714"/>
              <exon start="68040" stop="68047"/>
              <exon start="68269" stop="68305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65428" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65428" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65431" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65433" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65433" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65434" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65436" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65438" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65439" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65439" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65441" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65449" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65450" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65474" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65475" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66504" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66517" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66520" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66529" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67332" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67374" stop="67692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67374" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67393" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAAACCCTAGAATATCTCTTCCAGCGTCTTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG : GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTTAACAT : AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTTTGAAGTACTTGATAGATGTTAC : ATAAGCAT : TAAGAAACAGAAAATACCAAAAAGTTTAAATTTTCAA</gDNA_template>
            <first_frame> R  K  N  P  R  I  S  L  P  A  S  S  F  Q  L  P  P  T  L  F  L  P  R  R  R  P  E  F  P  V  Y  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  S  N  R  Q  L  F  A  F  R  V  G  S  *  K  S  L  Y  G  *  Q  S  Q  F  W  C  I  L  A  F  P  F  L  I  F  *  R  T  K  D  F  *  F  T  M  S  G  F  V  M  F  F  N  *  I  G  F  R  F  T  Y  G  F  *  I  L  L  Y  I  S  S  M  F  Y  L  Q  Y  S  H  Q  L  L  *  S  T  *  *  M  L   : H  K  H  :  *  E  T  E  N  T  K  K  F  K  F  S  </first_frame>
            <second_frame>  E  K  T  L  E  Y  L  F  Q  R  L  H  F  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  P  F  T  S  R  K  W :   F  F  Q  T  M  S  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  L  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  L  T   : *  Q  R  C  S  A  T  R  K  L  W  W  C  A  G  T  V  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  V  T  G  N  Y  L  L  L  E  W  E  V  K  K  V  Y  M  G  N  K  V  S  F  G  V  S  W  L  F  L  F  *  S  F  K  E  Q  R  I  F  S  L  P  C  L  V  L  L  C  F  S  I  K  L  G  F  D  S  L  M  D  F  E  F  C  Y  I  L  A  L  C  S  T  Y  N  I  P  I  N  Y  F  E  V  L  D  R  C  Y  :  I  S  I :   K  K  Q  K  I  P  K  S  L  N  F  Q </second_frame>
            <third_frame>   K  K  P  *  N  I  S  S  S  V  F  I  S  A  A  S  D  A  L  P  P  S  P  P  A  G  I  S  R  L  P  R  E  N   : G  S  S  K  R  C  R  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  *  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  *  H  :  N  N  G  V  Q  P  L  A  N  C  G  G  V  R  E  L  S  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  *  Q  A  I  I  C  F  *  S  G  K  L  K  K  F  I  W  V  T  K  S  V  L  V  Y  P  G  F  S  F  F  D  L  L  K  N  K  G  F  L  V  Y  H  V  W  F  C  Y  V  F  Q  L  N  W  V  S  I  H  L  W  I  L  N  F  A  I  Y  *  L  Y  V  L  P  T  I  F  P  S  I  T  L  K  Y  L  I  D  V  T :   *  A   : L  R  N  R  K  Y  Q  K  V  *  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65396" stop="65500"/>
                    <exon start="66453" stop="66554"/>
                    <exon start="66644" stop="66672"/>
                    <exon start="67320" stop="67446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKNPRISLPASSFQLPPTLFLPRRRPEFPVYLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67547" stop="67714"/>
                    <exon start="68040" stop="68047"/>
                    <exon start="68269" stop="68305"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFKEQRIFSLPCLVLLCFSIKLGFDSLMDFEFCYILALCSTYNIPINYFEVLDRCYISIKKQKIPKSLNFQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66644" e_stop="67692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="66644" e_stop="67692" e_length="1049"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66644" stop="67382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67332" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67374" stop="67692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67374" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67393" stop="67673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTCATTTTTTTTTGTTCATTTATCTTAGTTGGTGCTTTCGATATGAATTTAGTGACATTAGGGAAAAGAAAATAGTGATTGAAGTTGTAAAATGGTTATGGAGAAGTTAAGTTGATGAATTTAGTGATGCTTAAGTAATAGTAATTGAAGTTGAAAAATGTTATTTGAAAAAATGAAGTTGATATCTTTAGTGAAATTTGAAATAAAAAAGTAGTATTTGAATGTAAAAATGGTAATCGAACATTATAGTTTGGAAAAAAATATAGCTTTTAAGTTGAGTAATGTTTAACTTGTGTTTGGGATACATTTCACTTTGTTATAAGCTCCCTACTTCTTTTGGCTGAAAAAACAGGCCAGCTAGTTTTATGTAGTTTGGGGAACTCATCCTAAAAATTTAACAGAAAAGTCATTCTAATGTATATAAACCTAACAAGTTTTTATGTACTTTTTGAATAAATGGAAACAATTTTCATGTCCATAGTAAAAAGTAGAATTTTATGCACACTAACCGAATGTTTTCGGAAGGATGGTGGGATATCCAATCCTCATCTTGGTTCAGTTTCAACCTCACCTGCAATAACATCTCTCTTGTCATACAATGATATGTTCACCCTAAGTCTTATTCTCTCTCTATATGTGCAGAACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACCATGTCTGGTTTTGTTATGTTTTTCAATTAAATTGGGTTTCGATTCACTTATGGATTTTGAATTTTGCTATATATTAGCTCTATGTTCTACCTACAATATTCCCATCAATTACTT</gDNA_template>
            <first_frame> D  V  K  C  Q  G  C  F  N  M  *  V  H  F  F  L  F  I  Y  L  S  W  C  F  R  Y  E  F  S  D  I  R  E  K  K  I  V  I  E  V  V  K  W  L  W  R  S  *  V  D  E  F  S  D  A  *  V  I  V  I  E  V  E  K  C  Y  L  K  K  *  S  *  Y  L  *  *  N  L  K  *  K  S  S  I  *  M  *  K  W  *  S  N  I  I  V  W  K  K  I  *  L  L  S  *  V  M  F  N  L  C  L  G  Y  I  S  L  C  Y  K  L  P  T  S  F  G  *  K  N  R  P  A  S  F  M  *  F  G  E  L  I  L  K  I  *  Q  K  S  H  S  N  V  Y  K  P  N  K  F  L  C  T  F  *  I  N  G  N  N  F  H  V  H  S  K  K  *  N  F  M  H  T  N  R  M  F  S  E  G  W  W  D  I  Q  S  S  S  W  F  S  F  N  L  T  C  N  N  I  S  L  V  I  Q  *  Y  V  H  P  K  S  Y  S  L  S  I  C  A  E  Q  R  C  S  A  T  R  K  L  W  W  C  A  G  T  V  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  V  T  G  N  Y  L  L  L  E  W  E  V  K  K  V  Y  M  G  N  K  V  S  F  G  V  S  W  L  F  L  F  *  S  F  K  E  Q  R  I  F  S  L  P  C  L  V  L  L  C  F  S  I  K  L  G  F  D  S  L  M  D  F  E  F  C  Y  I  L  A  L  C  S  T  Y  N  I  P  I  N  Y   </first_frame>
            <second_frame>  M  *  S  A  R  V  A  L  T  C  K  F  I  F  F  C  S  F  I  L  V  G  A  F  D  M  N  L  V  T  L  G  K  R  K  *  *  L  K  L  *  N  G  Y  G  E  V  K  L  M  N  L  V  M  L  K  *  *  *  L  K  L  K  N  V  I  *  K  N  E  V  D  I  F  S  E  I  *  N  K  K  V  V  F  E  C  K  N  G  N  R  T  L  *  F  G  K  K  Y  S  F  *  V  E  *  C  L  T  C  V  W  D  T  F  H  F  V  I  S  S  L  L  L  L  A  E  K  T  G  Q  L  V  L  C  S  L  G  N  S  S  *  K  F  N  R  K  V  I  L  M  Y  I  N  L  T  S  F  Y  V  L  F  E  *  M  E  T  I  F  M  S  I  V  K  S  R  I  L  C  T  L  T  E  C  F  R  K  D  G  G  I  S  N  P  H  L  G  S  V  S  T  S  P  A  I  T  S  L  L  S  Y  N  D  M  F  T  L  S  L  I  L  S  L  Y  V  Q  N  N  G  V  Q  P  L  A  N  C  G  G  V  R  E  L  S  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  *  Q  A  I  I  C  F  *  S  G  K  L  K  K  F  I  W  V  T  K  S  V  L  V  Y  P  G  F  S  F  F  D  L  L  K  N  K  G  F  L  V  Y  H  V  W  F  C  Y  V  F  Q  L  N  W  V  S  I  H  L  W  I  L  N  F  A  I  Y  *  L  Y  V  L  P  T  I  F  P  S  I  T  </second_frame>
            <third_frame>   C  E  V  P  G  L  L  *  H  V  S  S  F  F  F  V  H  L  S  *  L  V  L  S  I  *  I  *  *  H  *  G  K  E  N  S  D  *  S  C  K  M  V  M  E  K  L  S  *  *  I  *  *  C  L  S  N  S  N  *  S  *  K  M  L  F  E  K  M  K  L  I  S  L  V  K  F  E  I  K  K  *  Y  L  N  V  K  M  V  I  E  H  Y  S  L  E  K  N  I  A  F  K  L  S  N  V  *  L  V  F  G  I  H  F  T  L  L  *  A  P  Y  F  F  W  L  K  K  Q  A  S  *  F  Y  V  V  W  G  T  H  P  K  N  L  T  E  K  S  F  *  C  I  *  T  *  Q  V  F  M  Y  F  L  N  K  W  K  Q  F  S  C  P  *  *  K  V  E  F  Y  A  H  *  P  N  V  F  G  R  M  V  G  Y  P  I  L  I  L  V  Q  F  Q  P  H  L  Q  *  H  L  S  C  H  T  M  I  C  S  P  *  V  L  F  S  L  Y  M  C  R  T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  S  N  R  Q  L  F  A  F  R  V  G  S  *  K  S  L  Y  G  *  Q  S  Q  F  W  C  I  L  A  F  P  F  L  I  F  *  R  T  K  D  F  *  F  T  M  S  G  F  V  M  F  F  N  *  I  G  F  R  F  T  Y  G  F  *  I  L  L  Y  I  S  S  M  F  Y  L  Q  Y  S  H  Q  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67134" stop="67406"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>METIFMSIVKSRILCTLTECFRKDGGISNPHLGSVSTSPAITSLLSYNDMFTLSLILSLYVQNNGVQPLANCGGVRELSDGLVPANWWAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67280" stop="67546"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVHPKSYSLSICAEQRCSATRKLWWCAGTVRRSCASQLVGVLDSPRVVLSGEREIREVTGNYLLLEWEVKKVYMGNKVSFGVSWLFLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="65428" e_stop="65500"/>
            <exon e_start="66453" e_stop="66554"/>
            <exon e_start="66644" e_stop="66672"/>
            <exon e_start="67320" e_stop="67578"/>
            <exon e_start="71409" e_stop="71466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.672"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65428" e_stop="65500" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.901">
            <gDNA_intron_boundary i_start="65501" i_stop="66452" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66453" e_stop="66554" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.880">
            <gDNA_intron_boundary i_start="66555" i_stop="66643" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66644" e_stop="66672" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66673" i_stop="67319" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="67320" e_stop="67578" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67579" i_stop="71408" i_length="3830"/>
          </intron>
          <exon e_serial="5" e_score="0.672">
            <gDNA_exon_boundary e_start="71409" e_stop="71466" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65428" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65432" stop="65500"/>
              <exon start="66453" stop="66554"/>
              <exon start="66644" stop="66672"/>
              <exon start="67320" stop="67578"/>
              <exon start="71409" stop="71466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTTCAGCTGCCTCCGACGCTCTTCCTCCCTCGCCGCCGGCCGGAATTTCCCGTTTACCTCGCGAAAATG : GTTCTTCCAAACGATGTCGACTTGTTGAACCCACCAGCTGAGCATGAGAAGAGAAAGCACAAGCTTAAGCGTTTGGTTCAATCTCCTAACTCTTTCTTCATG : GATGTGAAGTGCCAGGGTTGCTTTAACAT : AACAACGGTGTTCAGCCACTCGCAAACTGTGGTGGTGTGCGGGAACTGTCAGACGGTCTTGTGCCAGCCAACTGGTGGGCGTGCTAGACTCACCGAGGGTTGTTCTTTCAGGAGAAAGGGAGATTAGAGAAGTAACAGGCAATTATTTGCTTTTAGAGTGGGAAGTTAAAAAAGTTTATATGGGTAACAAAGTCAGTTTTGGTGTATCCTGGCTTTTCCTTTTTTGATCTTTTAAAGAACAAAGGATTTTTAGTTTACC : CAACCAAAAGAAAAAAGAAAAAAAGATAGACAAATGAAAGGAAAATATGGGAAATAAA</gDNA_template>
            <first_frame> F  I  S  A  A  S  D  A  L  P  P  S  P  P  A  G  I  S  R  L  P  R  E  N   : G  S  S  K  R  C  R  L  V  E  P  T  S  *  A  *  E  E  K  A  Q  A  *  A  F  G  S  I  S  *  L  F  L  H   : G  C  E  V  P  G  L  L  *  H  :  N  N  G  V  Q  P  L  A  N  C  G  G  V  R  E  L  S  D  G  L  V  P  A  N  W  W  A  C  *  T  H  R  G  L  F  F  Q  E  K  G  R  L  E  K  *  Q  A  I  I  C  F  *  S  G  K  L  K  K  F  I  W  V  T  K  S  V  L  V  Y  P  G  F  S  F  F  D  L  L  K  N  K  G  F  L  V  Y   : P  T  K  R  K  K  K  K  R  *  T  N  E  R  K  I  W  E  I   </first_frame>
            <second_frame>  S  F  Q  L  P  P  T  L  F  L  P  R  R  R  P  E  F  P  V  Y  L  A  K  M  :  V  L  P  N  D  V  D  L  L  N  P  P  A  E  H  E  K  R  K  H  K  L  K  R  L  V  Q  S  P  N  S  F  F  M  :  D  V  K  C  Q  G  C  F  N  I :   T  T  V  F  S  H  S  Q  T  V  V  V  C  G  N  C  Q  T  V  L  C  Q  P  T  G  G  R  A  R  L  T  E  G  C  S  F  R  R  K  G  D  *  R  S  N  R  Q  L  F  A  F  R  V  G  S  *  K  S  L  Y  G  *  Q  S  Q  F  W  C  I  L  A  F  P  F  L  I  F  *  R  T  K  D  F  *  F  T  :  Q  P  K  E  K  R  K  K  D  R  Q  M  K  G  K  Y  G  K  *  </second_frame>
            <third_frame>   H  F  S  C  L  R  R  S  S  S  L  A  A  G  R  N  F  P  F  T  S  R  K  W :   F  F  Q  T  M  S  T  C  *  T  H  Q  L  S  M  R  R  E  S  T  S  L  S  V  W  F  N  L  L  T  L  S  S  W :   M  *  S  A  R  V  A  L  T   : *  Q  R  C  S  A  T  R  K  L  W  W  C  A  G  T  V  R  R  S  C  A  S  Q  L  V  G  V  L  D  S  P  R  V  V  L  S  G  E  R  E  I  R  E  V  T  G  N  Y  L  L  L  E  W  E  V  K  K  V  Y  M  G  N  K  V  S  F  G  V  S  W  L  F  L  F  *  S  F  K  E  Q  R  I  F  S  L  P :   N  Q  K  K  K  E  K  K  I  D  K  *  K  E  N  M  G  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65429" stop="65500"/>
                    <exon start="66453" stop="66554"/>
                    <exon start="66644" stop="66672"/>
                    <exon start="67320" stop="67446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQLPPTLFLPRRRPEFPVYLAKMVLPNDVDLLNPPAEHEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="75444" PGL_stop="68468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75444" e_stop="75225"/>
            <exon e_start="73529" e_stop="73463"/>
            <exon e_start="72968" e_stop="72844"/>
            <exon e_start="71959" e_stop="71851"/>
            <exon e_start="71774" e_stop="71711"/>
            <exon e_start="71625" e_stop="71570"/>
            <exon e_start="70437" e_stop="70330"/>
            <exon e_start="69859" e_stop="69710"/>
            <exon e_start="69289" e_stop="69119"/>
            <exon e_start="68866" e_stop="68468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.536" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.929" e_score="0.987"/>
          <exon-intron don_prob="0.856" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75444" e_stop="75225" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.964">
            <gDNA_intron_boundary i_start="75224" i_stop="73530" i_length="1695"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73529" e_stop="73463" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.682" acc_prob="0.974">
            <gDNA_intron_boundary i_start="73462" i_stop="72969" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72968" e_stop="72844" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.891">
            <gDNA_intron_boundary i_start="72843" i_stop="71960" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71959" e_stop="71851" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.536" acc_prob="0.980">
            <gDNA_intron_boundary i_start="71850" i_stop="71775" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71774" e_stop="71711" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.876">
            <gDNA_intron_boundary i_start="71710" i_stop="71626" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71625" e_stop="71570" e_length="56"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71569" i_stop="70438" i_length="1132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70437" e_stop="70330" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70329" i_stop="69860" i_length="470"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="69859" e_stop="69710" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.929">
            <gDNA_intron_boundary i_start="69709" i_stop="69290" i_length="420"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69289" e_stop="69119" e_length="171"/>
          </exon>
          <intron i_serial="9" don_prob="0.856" acc_prob="0.988">
            <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="68866" e_stop="68468" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75444" stop="75225"/>
              <exon start="73529" stop="73463"/>
              <exon start="72968" stop="72844"/>
              <exon start="71959" stop="71851"/>
              <exon start="71774" stop="71711"/>
              <exon start="71625" stop="71570"/>
              <exon start="70437" stop="70330"/>
              <exon start="69859" stop="69759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75444" stop="75225"/>
              <exon start="73529" stop="73463"/>
              <exon start="72968" stop="72844"/>
              <exon start="71959" stop="71851"/>
              <exon start="71774" stop="71711"/>
              <exon start="71625" stop="71615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75444" stop="75225"/>
              <exon start="73529" stop="73463"/>
              <exon start="72968" stop="72877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279128" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75443" stop="75225"/>
              <exon start="73529" stop="73463"/>
              <exon start="72968" stop="72844"/>
              <exon start="71959" stop="71851"/>
              <exon start="71774" stop="71711"/>
              <exon start="71625" stop="71570"/>
              <exon start="70437" stop="70382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393444" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75423" stop="75225"/>
              <exon start="73529" stop="73463"/>
              <exon start="72968" stop="72844"/>
              <exon start="71959" stop="71851"/>
              <exon start="71774" stop="71711"/>
              <exon start="71625" stop="71570"/>
              <exon start="70437" stop="70330"/>
              <exon start="69859" stop="69819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72898" stop="72844"/>
              <exon start="71959" stop="71851"/>
              <exon start="71774" stop="71711"/>
              <exon start="71625" stop="71570"/>
              <exon start="70437" stop="70330"/>
              <exon start="69859" stop="69710"/>
              <exon start="69289" stop="69119"/>
              <exon start="68866" stop="68849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70437" stop="70330"/>
              <exon start="69859" stop="69710"/>
              <exon start="69289" stop="69119"/>
              <exon start="68866" stop="68498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70372" stop="70330"/>
              <exon start="69859" stop="69710"/>
              <exon start="69289" stop="69119"/>
              <exon start="68866" stop="68468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="69119"/>
              <exon start="68866" stop="68521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69228" stop="69119"/>
              <exon start="68866" stop="68500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68861" stop="68485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207784" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAATGAACTGCGTCACTGCTCCCAAGGCGAATTGGCGATGTTCGCCGGCGATTTCGTTCTACTCCGATTCCACTAAACTCTACAATCGGAGCAGCATCCGCTTCTACGCCGGAAACCGGAACTCCAGCAGAATCAGATGCAACTTGAAAGCTACCGGCAGCAGCAACAATCAGCCGGAAACAAGTACCGGAATCCAGCTATATAGAGATATTGAGAG : ATTACTTACAGAGACAGTGAAGCAATCTCAAGATTGGGGAAGTTCACAGGACTGGGATGAAATCGAG : GGAGCATGGGTATTGCAACCAAAAACATCAAAGCCGAAGTTAGTCGTACATTTTATTGGAGGTGTTTTTGTTGGGGCTGCTCCGCAGCTTTCTTACCGCCTGTTCCTTGAGCGGCTCAGACAGAA : GGATGTCTTGGTGATTGCTACACCTTATGCTAGTGGATTTGACCATTTCTACATTGCAGATGAAGTGCAGTTTAAGTTTGATAGGTGCCTTAGATTTCTCCAAGAAAGA : GTACAAGACCTTCCTGTATTTGGCATTGGGCACTCTTTAGGATCTGTAATTCACCTTTTGATTG : GAGCTAGATATGCTGTGAAAAGAAACGGGAATGTATTGATGGCTTTCAACAACAAG : GATGCCAGCCTTGCAGTGCCGTTGTTCTCATCTGTTCTTGTTCCAATGATGCAAAACTTAGGACCAGTTTTATCACAGATCGCATCATCACCAACCATTCGTCTTGGG : GCGGAGATGACTATGAAGCAAATAGAGAACCTTAGCCCCTCAATCATGAAGCAAGTTTTTCCACTGGTTGAGCAACTGACTCCTCTATACACGGACTTGATTAATGGAAAAGAAAATTTCACTCCAAGACCAGAAGAAACTCAAAGACTG : ATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG : GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTTGTAACTGGTAAGTGGTA</gDNA_template>
            <first_frame> L  Q  *  T  A  S  L  L  P  R  R  I  G  D  V  R  R  R  F  R  S  T  P  I  P  L  N  S  T  I  G  A  A  S  A  S  T  P  E  T  G  T  P  A  E  S  D  A  T  *  K  L  P  A  A  A  T  I  S  R  K  Q  V  P  E  S  S  Y  I  E  I  L  R   : D  Y  L  Q  R  Q  *  S  N  L  K  I  G  E  V  H  R  T  G  M  K  S  R :   E  H  G  Y  C  N  Q  K  H  Q  S  R  S  *  S  Y  I  L  L  E  V  F  L  L  G  L  L  R  S  F  L  T  A  C  S  L  S  G  S  D  R   : R  M  S  W  *  L  L  H  L  M  L  V  D  L  T  I  S  T  L  Q  M  K  C  S  L  S  L  I  G  A  L  D  F  S  K  K  E :   Y  K  T  F  L  Y  L  A  L  G  T  L  *  D  L  *  F  T  F  *  L  :  E  L  D  M  L  *  K  E  T  G  M  Y  *  W  L  S  T  T  R :   M  P  A  L  Q  C  R  C  S  H  L  F  L  F  Q  *  C  K  T  *  D  Q  F  Y  H  R  S  H  H  H  Q  P  F  V  L  G :   R  R  *  L  *  S  K  *  R  T  L  A  P  Q  S  *  S  K  F  F  H  W  L  S  N  *  L  L  Y  T  R  T  *  L  M  E  K  K  I  S  L  Q  D  Q  K  K  L  K  D  * :   *  G  P  T  T  G  F  R  G  I  S  *  L  S  S  K  M  I  Q  S  T  K  L  Q  H  *  L  R  C  S  A  Q  V  P  P  S  A  Q  C  W  I  C  L  S  A  L  F  L  E  T  M  R  F  L  Y  S  R :   L  Y  Q  M  L  L  Q  E  *  R  T  L  L  T  G  A  A  S  Y  W  R  T  *  Q  Q  E  R  H  G  K  T  S  R  R  K  S  A  I  R  S  V  M  *  T  L  *  F  L  I  L  G  I  Q  R  T  W  I  C  L  W  R  Q  *  H  H  G  C  T  L  T  L  A  Q  N  F  Y  S  D  I  C  *  K  K  Y  M  Y  M  N  P  T  E  W  F  C  N  L  *  *  L  Y  I  L  D  *  H  L  V  L  M  Y  N  N  V  T  N  F  L  N  V  L  V  *  K  G  Q  L  F  V  T  G  K  W   </first_frame>
            <second_frame>  C  N  E  L  R  H  C  S  Q  G  E  L  A  M  F  A  G  D  F  V  L  L  R  F  H  *  T  L  Q  S  E  Q  H  P  L  L  R  R  K  P  E  L  Q  Q  N  Q  M  Q  L  E  S  Y  R  Q  Q  Q  Q  S  A  G  N  K  Y  R  N  P  A  I  *  R  Y  *  E  :  I  T  Y  R  D  S  E  A  I  S  R  L  G  K  F  T  G  L  G  *  N  R   : G  S  M  G  I  A  T  K  N  I  K  A  E  V  S  R  T  F  Y  W  R  C  F  C  W  G  C  S  A  A  F  L  P  P  V  P  *  A  A  Q  T  E  :  G  C  L  G  D  C  Y  T  L  C  *  W  I  *  P  F  L  H  C  R  *  S  A  V  *  V  *  *  V  P  *  I  S  P  R  K   : S  T  R  P  S  C  I  W  H  W  A  L  F  R  I  C  N  S  P  F  D  W :   S  *  I  C  C  E  K  K  R  E  C  I  D  G  F  Q  Q  Q   : G  C  Q  P  C  S  A  V  V  L  I  C  S  C  S  N  D  A  K  L  R  T  S  F  I  T  D  R  I  I  T  N  H  S  S  W   : G  G  D  D  Y  E  A  N  R  E  P  *  P  L  N  H  E  A  S  F  S  T  G  *  A  T  D  S  S  I  H  G  L  D  *  W  K  R  K  F  H  S  K  T  R  R  N  S  K  T   : D  K  V  L  L  R  D  F  E  E  S  L  S  *  V  Q  R  *  Y  N  R  R  N  F  N  T  S  S  G  A  Q  L  R  F  R  H  Q  L  N  A  G  Y  V  Y  P  H  S  S  W  R  P  C  A  S  S  T  A   : G  S  T  K  C  S  S  R  N  D  G  R  C  *  Q  E  Q  R  A  I  G  E  L  D  S  R  N  A  M  G  K  R  H  E  G  S  R  Q  Y  A  R  *  C  R  L  Y  N  S  *  F  W  E  F  K  G  L  G  Y  A  C  G  D  N  N  I  M  D  V  L  *  H  W  P  K  T  F  T  V  I  Y  A  K  K  N  I  C  I  *  T  L  L  N  G  S  V  I  C  N  D  C  I  Y  L  I  D  I  *  Y  S  C  I  I  M  *  L  T  F  *  M  F  W  Y  K  K  V  N  Y  L  *  L  V  S  G  </second_frame>
            <third_frame>   A  M  N  C  V  T  A  P  K  A  N  W  R  C  S  P  A  I  S  F  Y  S  D  S  T  K  L  Y  N  R  S  S  I  R  F  Y  A  G  N  R  N  S  S  R  I  R  C  N  L  K  A  T  G  S  S  N  N  Q  P  E  T  S  T  G  I  Q  L  Y  R  D  I  E  R :   L  L  T  E  T  V  K  Q  S  Q  D  W  G  S  S  Q  D  W  D  E  I  E  :  G  A  W  V  L  Q  P  K  T  S  K  P  K  L  V  V  H  F  I  G  G  V  F  V  G  A  A  P  Q  L  S  Y  R  L  F  L  E  R  L  R  Q  K :   D  V  L  V  I  A  T  P  Y  A  S  G  F  D  H  F  Y  I  A  D  E  V  Q  F  K  F  D  R  C  L  R  F  L  Q  E  R  :  V  Q  D  L  P  V  F  G  I  G  H  S  L  G  S  V  I  H  L  L  I   : G  A  R  Y  A  V  K  R  N  G  N  V  L  M  A  F  N  N  K  :  D  A  S  L  A  V  P  L  F  S  S  V  L  V  P  M  M  Q  N  L  G  P  V  L  S  Q  I  A  S  S  P  T  I  R  L  G  :  A  E  M  T  M  K  Q  I  E  N  L  S  P  S  I  M  K  Q  V  F  P  L  V  E  Q  L  T  P  L  Y  T  D  L  I  N  G  K  E  N  F  T  P  R  P  E  E  T  Q  R  L  :  I  R  S  Y  Y  G  I  S  R  N  L  L  V  K  F  K  D  D  T  I  D  E  T  S  T  L  A  Q  V  L  S  S  G  S  A  I  S  S  M  L  D  M  S  I  R  T  L  P  G  D  H  A  L  P  L  Q  Q  :  A  L  P  N  A  P  P  G  M  T  D  A  V  N  R  S  S  E  L  L  A  N  L  T  A  G  T  P  W  E  N  V  T  K  E  V  G  N  T  L  G  N  V  D  S  I  I  L  N  S  G  N  S  K  D  L  D  M  L  V  E  T  I  T  S  W  M  Y  S  N  T  G  P  K  L  L  Q  *  Y  M  L  K  K  I  Y  V  Y  E  P  Y  *  M  V  L  *  F  V  M  I  V  Y  T  *  L  T  F  S  T  H  V  *  *  C  D  *  L  F  E  C  F  G  I  K  R  S  I  I  C  N  W  *  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75442" stop="75225"/>
                    <exon start="73529" stop="73463"/>
                    <exon start="72968" stop="72844"/>
                    <exon start="71959" stop="71851"/>
                    <exon start="71774" stop="71711"/>
                    <exon start="71625" stop="71570"/>
                    <exon start="70437" stop="70330"/>
                    <exon start="69859" stop="69710"/>
                    <exon start="69289" stop="69119"/>
                    <exon start="68866" stop="68633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMNCVTAPKANWRCSPAISFYSDSTKLYNRSSIRFYAGNRNSSRIRCNLKATGSSNNQPETSTGIQLYRDIERLLTETVKQSQDWGSSQDWDEIEGAWVLQPKTSKPKLVVHFIGGVFVGAAPQLSYRLFLERLRQKDVLVIATPYASGFDHFYIADEVQFKFDRCLRFLQERVQDLPVFGIGHSLGSVIHLLIGARYAVKRNGNVLMAFNNKDASLAVPLFSSVLVPMMQNLGPVLSQIASSPTIRLGAEMTMKQIENLSPSIMKQVFPLVEQLTPLYTDLINGKENFTPRPEETQRLIRSYYGISRNLLVKFKDDTIDETSTLAQVLSSGSAISSMLDMSIRTLPGDHALPLQQALPNAPPGMTDAVNRSSELLANLTAGTPWENVTKEVGNTLGNVDSIILNSGNSKDLDMLVETITSWMYSNTGPKLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69298" e_stop="69119"/>
            <exon e_start="68866" e_stop="68485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.856" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69298" e_stop="69119" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.856" acc_prob="0.988">
            <gDNA_intron_boundary i_start="69118" i_stop="68867" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="68866" e_stop="68485" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69298" stop="69119"/>
              <exon start="68866" stop="68485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393227" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="69119"/>
              <exon start="68866" stop="68521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69228" stop="69119"/>
              <exon start="68866" stop="68500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68861" stop="68485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207784" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTACAGATAAGGTCCTACTACGGGATTTCGAGGAATCTCTTAGTTAAGTTCAAAGATGATACAATCGACGAAACTTCAACACTAGCTCAGGTGCTCAGCTCAGGTTCCGCCATCAGCTCAATGCTGGATATGTCTATCCGCACTCTTCCTGGAGACCATGCGCTTCCTCTACAGCAG : GCTCTACCAAATGCTCCTCCAGGAATGACGGACGCTGTTAACAGGAGCAGCGAGCTATTGGCGAACTTGACAGCAGGAACGCCATGGGAAAACGTCACGAAGGAAGTCGGCAATACGCTCGGTAATGTAGACTCTATAATTCTTAATTCTGGGAATTCAAAGGACTTGGATATGCTTGTGGAGACAATAACATCATGGATGTACTCTAACACTGGCCCAAAACTTTTACAGTGATATATGCTAAAAAAAATATATGTATATGAACCCTACTGAATGGTTCTGTAATTTGTAATGATTGTATATACTTGATTGACATTTAGTACTCATGTATAATAATGTGACTAACTTTTTGAATGTTTTGGTATAAAAAGGTCAATTATTT</gDNA_template>
            <first_frame> T  L  Q  I  R  S  Y  Y  G  I  S  R  N  L  L  V  K  F  K  D  D  T  I  D  E  T  S  T  L  A  Q  V  L  S  S  G  S  A  I  S  S  M  L  D  M  S  I  R  T  L  P  G  D  H  A  L  P  L  Q  Q  :  A  L  P  N  A  P  P  G  M  T  D  A  V  N  R  S  S  E  L  L  A  N  L  T  A  G  T  P  W  E  N  V  T  K  E  V  G  N  T  L  G  N  V  D  S  I  I  L  N  S  G  N  S  K  D  L  D  M  L  V  E  T  I  T  S  W  M  Y  S  N  T  G  P  K  L  L  Q  *  Y  M  L  K  K  I  Y  V  Y  E  P  Y  *  M  V  L  *  F  V  M  I  V  Y  T  *  L  T  F  S  T  H  V  *  *  C  D  *  L  F  E  C  F  G  I  K  R  S  I  I  </first_frame>
            <second_frame>  H  Y  R  *  G  P  T  T  G  F  R  G  I  S  *  L  S  S  K  M  I  Q  S  T  K  L  Q  H  *  L  R  C  S  A  Q  V  P  P  S  A  Q  C  W  I  C  L  S  A  L  F  L  E  T  M  R  F  L  Y  S  R :   L  Y  Q  M  L  L  Q  E  *  R  T  L  L  T  G  A  A  S  Y  W  R  T  *  Q  Q  E  R  H  G  K  T  S  R  R  K  S  A  I  R  S  V  M  *  T  L  *  F  L  I  L  G  I  Q  R  T  W  I  C  L  W  R  Q  *  H  H  G  C  T  L  T  L  A  Q  N  F  Y  S  D  I  C  *  K  K  Y  M  Y  M  N  P  T  E  W  F  C  N  L  *  *  L  Y  I  L  D  *  H  L  V  L  M  Y  N  N  V  T  N  F  L  N  V  L  V  *  K  G  Q  L  F </second_frame>
            <third_frame>   T  T  D  K  V  L  L  R  D  F  E  E  S  L  S  *  V  Q  R  *  Y  N  R  R  N  F  N  T  S  S  G  A  Q  L  R  F  R  H  Q  L  N  A  G  Y  V  Y  P  H  S  S  W  R  P  C  A  S  S  T  A   : G  S  T  K  C  S  S  R  N  D  G  R  C  *  Q  E  Q  R  A  I  G  E  L  D  S  R  N  A  M  G  K  R  H  E  G  S  R  Q  Y  A  R  *  C  R  L  Y  N  S  *  F  W  E  F  K  G  L  G  Y  A  C  G  D  N  N  I  M  D  V  L  *  H  W  P  K  T  F  T  V  I  Y  A  K  K  N  I  C  I  *  T  L  L  N  G  S  V  I  C  N  D  C  I  Y  L  I  D  I  *  Y  S  C  I  I  M  *  L  T  F  *  M  F  W  Y  K  K  V  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69298" stop="69119"/>
                    <exon start="68866" stop="68633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLQIRSYYGISRNLLVKFKDDTIDETSTLAQVLSSGSAISSMLDMSIRTLPGDHALPLQQALPNAPPGMTDAVNRSSELLANLTAGTPWENVTKEVGNTLGNVDSIILNSGNSKDLDMLVETITSWMYSNTGPKLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="84664" PGL_stop="76447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84664" e_stop="84577"/>
            <exon e_start="84397" e_stop="84257"/>
            <exon e_start="82948" e_stop="82589"/>
            <exon e_start="81924" e_stop="81766"/>
            <exon e_start="80863" e_stop="80783"/>
            <exon e_start="78904" e_stop="78809"/>
            <exon e_start="78655" e_stop="78515"/>
            <exon e_start="78435" e_stop="78292"/>
            <exon e_start="77357" e_stop="77250"/>
            <exon e_start="76951" e_stop="76900"/>
            <exon e_start="76807" e_stop="76447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.867" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84664" e_stop="84577" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84576" i_stop="84398" i_length="179"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84397" e_stop="84257" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.760" acc_prob="0.880">
            <gDNA_intron_boundary i_start="84256" i_stop="82949" i_length="1308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82948" e_stop="82589" e_length="360"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.847">
            <gDNA_intron_boundary i_start="82588" i_stop="81925" i_length="664"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81924" e_stop="81766" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="81765" i_stop="80864" i_length="902"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80863" e_stop="80783" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.919" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80782" i_stop="78905" i_length="1878"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="78904" e_stop="78809" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="78808" i_stop="78656" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78655" e_stop="78515" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="78514" i_stop="78436" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78435" e_stop="78292" e_length="144"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77357" e_stop="77250" e_length="108"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77249" i_stop="76952" i_length="298"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="76951" e_stop="76900" e_length="52"/>
          </exon>
          <intron i_serial="10" don_prob="0.958" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76899" i_stop="76808" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="76807" e_stop="76447" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84664" stop="84577"/>
              <exon start="84397" stop="84257"/>
              <exon start="82948" stop="82613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84397" stop="84257"/>
              <exon start="82948" stop="82589"/>
              <exon start="81924" stop="81766"/>
              <exon start="80863" stop="80851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82670" stop="82589"/>
              <exon start="81924" stop="81766"/>
              <exon start="80863" stop="80783"/>
              <exon start="78904" stop="78809"/>
              <exon start="78655" stop="78515"/>
              <exon start="78435" stop="78292"/>
              <exon start="77357" stop="77250"/>
              <exon start="76951" stop="76907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81821" stop="81766"/>
              <exon start="80863" stop="80783"/>
              <exon start="78904" stop="78809"/>
              <exon start="78655" stop="78515"/>
              <exon start="78435" stop="78292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81821" stop="81766"/>
              <exon start="80863" stop="80783"/>
              <exon start="78904" stop="78809"/>
              <exon start="78655" stop="78515"/>
              <exon start="78435" stop="78323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81819" stop="81766"/>
              <exon start="80863" stop="80783"/>
              <exon start="78904" stop="78809"/>
              <exon start="78655" stop="78515"/>
              <exon start="78435" stop="78352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78332" stop="78292"/>
              <exon start="77357" stop="77250"/>
              <exon start="76951" stop="76900"/>
              <exon start="76807" stop="76463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77313" stop="77250"/>
              <exon start="76951" stop="76900"/>
              <exon start="76807" stop="76463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254437" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77301" stop="77250"/>
              <exon start="76951" stop="76900"/>
              <exon start="76807" stop="76485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77288" stop="77250"/>
              <exon start="76951" stop="76900"/>
              <exon start="76807" stop="76463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77286" stop="77250"/>
              <exon start="76951" stop="76900"/>
              <exon start="76807" stop="76485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76909" stop="76900"/>
              <exon start="76807" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76909" stop="76900"/>
              <exon start="76807" stop="76447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCTCTTTTTTCTACAAACTCTCTTCGCAATTTGTTCTTCAATTTTGCGGTCGAAGATTGGCGCAATTTCATCAACTAATTCAAT : CGGAGATTCTTGGTTTGTTTGGAAATACAGTAGGAGGAATTGATTTAGCTATTTTTACTCAAAGTTTGGATTTTTGAAGCAAAAGGGAAGAAGAATCAACTGTAACAATGTTGAGTATGTTAGTATTGATCTGGAATTAAG : TTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCTTGAAGAGTTCAATTTGTTGAAGTCTGGTGATATCTTGGAGGATGAGCTTTTGCACATGCTTGAATTAGAAAGTCGATTTTGACTTGTTTCTGGATAGAATTAGCATCTAACAAGTGTAGTGGTGATAATTCTCTTTTACGGAAGTTTTATCCCGTTCCAATAATGAAGGAAGACAGAGATGGTTTCTTTGTTGTTAAGAAAGGAGATATTGTTGGAGTATACAGAAACTTGGGTGACTGCCAGACTCAAGTCGGATCCTCG : ATATGTGATCCTCCGGTTAGTGTGTATAAAGGCTACTCCATGCCAAAGGACACGGAGGAATATCTTCTATCTTGTGGACTTAAAAATGCATTATATTCTATCAGAGCTGCAGATCTGACTGAAAGTCTCTTTGGGGCTCTAGTACCATGCCCTTTTCAG : CATCAATCTTCTTCCAAAGGTGGAGCGTCTGAGCATACGCCGAAGAAGAGGTCTCAGGAAGCAATGTGGTCAGAATATGCG : GATGCTGTTGGATCAGTTGTTGCTTCAAATGATTCCCTAAGAAAGCATATCAAGTTAGAACCTCCTAAGGGTGACCAGCAAGCTCTATCATCCGGT : GTTTATGCTGTTGGAATGAAGGAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTG : ATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG : ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGG : GAATCTAACTGTGACGCGGATCAGCAGGCGAACTTGGCTATTGAACTTCCAG : ATGGTCATGTCCAGGAGGAGATAGAGAAATGACAAACGGGGCTGTAGACGACGACTCTAAACGTGGTGCTAACGAAGATCTCATCGTGCTAACCACCGAGCATCGCGTTTTGCCTGTAAGTCAGTGGATAGCACAATATGTTTTTACCTGAAACTCGAAGACCGATGAGGGAACTGATTGATGCGAATCGTATCGAGCTATGATACGGTAATTTATTTAACTTGTACTATTAGTATCGCAATATGCGTGTAATAACGAATTTCATGCATCTTTTGACAGATTGTAATAATTTTAAGTACAATGAGTATTAGTACTTTACTACTATATAGAAGTGGCTAAAAGCAGATGCTCTCTCCGTTTC</gDNA_template>
            <first_frame> K  S  S  F  F  Y  K  L  S  S  Q  F  V  L  Q  F  C  G  R  R  L  A  Q  F  H  Q  L  I  Q   : S  E  I  L  G  L  F  G  N  T  V  G  G  I  D  L  A  I  F  T  Q  S  L  D  F  *  S  K  R  E  E  E  S  T  V  T  M  L  S  M  L  V  L  I  W  N  *   : V  L  Q  E  C  V  K  S  E  E  S  P  M  *  *  I  L  V  S  C  M  F  C  C  N  I  D  K  H  Y  I  S  A  L  K  S  S  I  C  *  S  L  V  I  S  W  R  M  S  F  C  T  C  L  N  *  K  V  D  F  D  L  F  L  D  R  I  S  I  *  Q  V  *  W  *  *  F  S  F  T  E  V  L  S  R  S  N  N  E  G  R  Q  R  W  F  L  C  C  *  E  R  R  Y  C  W  S  I  Q  K  L  G  *  L  P  D  S  S  R  I  L   : D  M  *  S  S  G  *  C  V  *  R  L  L  H  A  K  G  H  G  G  I  S  S  I  L  W  T  *  K  C  I  I  F  Y  Q  S  C  R  S  D  *  K  S  L  W  G  S  S  T  M  P  F  S   : A  S  I  F  F  Q  R  W  S  V  *  A  Y  A  E  E  E  V  S  G  S  N  V  V  R  I  C   : G  C  C  W  I  S  C  C  F  K  *  F  P  K  K  A  Y  Q  V  R  T  S  *  G  *  P  A  S  S  I  I  R   : C  L  C  C  W  N  E  G  S  *  S  W  L  S  S  A  A  V  L  Y  S  *  I  *  W  Y  F  K  R  K  P  R  T  S  W  C  R  S  C  S  T  S  *  R  W  K  F   : D  L  *  A  A  *  R  F  R  N  S  N  N  Q  C  C  *  I  S  R  L  Y  L  G  F  E  I  C  T  *  Q  R  V  Y  K  Y  S  C  S  G  *  F  Q  T  C  L  Y  A   : D  P  G  S  M  E  S  *  K  S  K  H  L  Y  A  I  S  A  G  K  T  T  K  G  *  V  F  F  F  P  H  H  S  C  S  S   : G  I  *  L  *  R  G  S  A  G  E  L  G  Y  *  T  S  R :   W  S  C  P  G  G  D  R  E  M  T  N  G  A  V  D  D  D  S  K  R  G  A  N  E  D  L  I  V  L  T  T  E  H  R  V  L  P  V  S  Q  W  I  A  Q  Y  V  F  T  *  N  S  K  T  D  E  G  T  D  *  C  E  S  Y  R  A  M  I  R  *  F  I  *  L  V  L  L  V  S  Q  Y  A  C  N  N  E  F  H  A  S  F  D  R  L  *  *  F  *  V  Q  *  V  L  V  L  Y  Y  Y  I  E  V  A  K  S  R  C  S  L  R  F </first_frame>
            <second_frame>  N  P  L  F  S  T  N  S  L  R  N  L  F  F  N  F  A  V  E  D  W  R  N  F  I  N  *  F  N  :  R  R  F  L  V  C  L  E  I  Q  *  E  E  L  I  *  L  F  L  L  K  V  W  I  F  E  A  K  G  K  K  N  Q  L  *  Q  C  *  V  C  *  Y  *  S  G  I  K  :  F  Y  R  N  A  S  S  L  R  K  V  P  C  N  E  F  L  F  H  A  C  F  V  A  I  L  T  S  T  T  Y  L  P  *  R  V  Q  F  V  E  V  W  *  Y  L  G  G  *  A  F  A  H  A  *  I  R  K  S  I  L  T  C  F  W  I  E  L  A  S  N  K  C  S  G  D  N  S  L  L  R  K  F  Y  P  V  P  I  M  K  E  D  R  D  G  F  F  V  V  K  K  G  D  I  V  G  V  Y  R  N  L  G  D  C  Q  T  Q  V  G  S  S  :  I  C  D  P  P  V  S  V  Y  K  G  Y  S  M  P  K  D  T  E  E  Y  L  L  S  C  G  L  K  N  A  L  Y  S  I  R  A  A  D  L  T  E  S  L  F  G  A  L  V  P  C  P  F  Q  :  H  Q  S  S  S  K  G  G  A  S  E  H  T  P  K  K  R  S  Q  E  A  M  W  S  E  Y  A  :  D  A  V  G  S  V  V  A  S  N  D  S  L  R  K  H  I  K  L  E  P  P  K  G  D  Q  Q  A  L  S  S  G  :  V  Y  A  V  G  M  K  E  A  D  R  G  Y  P  Q  Q  R  S  C  T  L  E  F  D  G  T  S  K  G  N  P  G  Q  A  G  A  G  A  V  V  R  A  D  D  G  S  L  :  I  C  R  L  R  E  G  L  G  I  A  T  T  S  V  A  E  Y  R  G  F  I  L  G  L  K  Y  A  H  S  K  G  F  T  S  I  R  A  Q  G  D  S  K  L  V  C  M  Q  :  I  Q  G  L  W  K  V  K  N  Q  N  I  S  T  L  F  Q  Q  A  K  Q  L  K  D  R  F  F  S  F  R  I  I  H  V  L  R  :  E  S  N  C  D  A  D  Q  Q  A  N  L  A  I  E  L  P   : D  G  H  V  Q  E  E  I  E  K  *  Q  T  G  L  *  T  T  T  L  N  V  V  L  T  K  I  S  S  C  *  P  P  S  I  A  F  C  L  *  V  S  G  *  H  N  M  F  L  P  E  T  R  R  P  M  R  E  L  I  D  A  N  R  I  E  L  *  Y  G  N  L  F  N  L  Y  Y  *  Y  R  N  M  R  V  I  T  N  F  M  H  L  L  T  D  C  N  N  F  K  Y  N  E  Y  *  Y  F  T  T  I  *  K  W  L  K  A  D  A  L  S  V   </second_frame>
            <third_frame>   I  L  F  F  L  Q  T  L  F  A  I  C  S  S  I  L  R  S  K  I  G  A  I  S  S  T  N  S  I :   G  D  S  W  F  V  W  K  Y  S  R  R  N  *  F  S  Y  F  Y  S  K  F  G  F  L  K  Q  K  G  R  R  I  N  C  N  N  V  E  Y  V  S  I  D  L  E  L  S :   F  T  G  M  R  Q  V  *  G  K  S  H  V  M  N  S  C  F  M  H  V  L  L  Q  Y  *  Q  A  L  H  I  C  L  E  E  F  N  L  L  K  S  G  D  I  L  E  D  E  L  L  H  M  L  E  L  E  S  R  F  *  L  V  S  G  *  N  *  H  L  T  S  V  V  V  I  I  L  F  Y  G  S  F  I  P  F  Q  *  *  R  K  T  E  M  V  S  L  L  L  R  K  E  I  L  L  E  Y  T  E  T  W  V  T  A  R  L  K  S  D  P  R :   Y  V  I  L  R  L  V  C  I  K  A  T  P  C  Q  R  T  R  R  N  I  F  Y  L  V  D  L  K  M  H  Y  I  L  S  E  L  Q  I  *  L  K  V  S  L  G  L  *  Y  H  A  L  F  S :   I  N  L  L  P  K  V  E  R  L  S  I  R  R  R  R  G  L  R  K  Q  C  G  Q  N  M  R :   M  L  L  D  Q  L  L  L  Q  M  I  P  *  E  S  I  S  S  *  N  L  L  R  V  T  S  K  L  Y  H  P  V :   F  M  L  L  E  *  R  K  L  I  V  V  I  L  S  S  G  L  V  L  L  N  L  M  V  L  Q  K  E  T  Q  D  K  L  V  Q  E  L  *  Y  E  L  T  M  E  V  * :   S  V  G  C  V  K  V  *  E  *  Q  Q  P  V  L  L  N  I  E  A  L  S  W  V  *  N  M  H  I  A  K  G  L  Q  V  F  V  L  R  V  I  P  N  L  F  V  C  R :   S  R  V  Y  G  K  L  K  I  K  T  S  L  R  Y  F  S  R  Q  N  N  *  R  I  G  F  F  L  S  A  S  F  M  F  F  G :   N  L  T  V  T  R  I  S  R  R  T  W  L  L  N  F  Q  :  M  V  M  S  R  R  R  *  R  N  D  K  R  G  C  R  R  R  L  *  T  W  C  *  R  R  S  H  R  A  N  H  R  A  S  R  F  A  C  K  S  V  D  S  T  I  C  F  Y  L  K  L  E  D  R  *  G  N  *  L  M  R  I  V  S  S  Y  D  T  V  I  Y  L  T  C  T  I  S  I  A  I  C  V  *  *  R  I  S  C  I  F  *  Q  I  V  I  I  L  S  T  M  S  I  S  T  L  L  L  Y  R  S  G  *  K  Q  M  L  S  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82786" stop="82589"/>
                    <exon start="81924" stop="81766"/>
                    <exon start="80863" stop="80783"/>
                    <exon start="78904" stop="78809"/>
                    <exon start="78655" stop="78515"/>
                    <exon start="78435" stop="78292"/>
                    <exon start="77357" stop="77250"/>
                    <exon start="76951" stop="76900"/>
                    <exon start="76807" stop="76776"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRKSILTCFWIELASNKCSGDNSLLRKFYPVPIMKEDRDGFFVVKKGDIVGVYRNLGDCQTQVGSSICDPPVSVYKGYSMPKDTEEYLLSCGLKNALYSIRAADLTESLFGALVPCPFQHQSSSKGGASEHTPKKRSQEAMWSEYADAVGSVVASNDSLRKHIKLEPPKGDQQALSSGVYAVGMKEADRGYPQQRSCTLEFDGTSKGNPGQAGAGAVVRADDGSLICRLREGLGIATTSVAEYRGFILGLKYAHSKGFTSIRAQGDSKLVCMQIQGLWKVKNQNISTLFQQAKQLKDRFFSFRIIHVLRESNCDADQQANLAIELPDGHVQEEIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78634" e_stop="78292"/>
            <exon e_start="77357" e_stop="77238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="0.968"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="78634" e_stop="78292" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="78291" i_stop="77358" i_length="934"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="77357" e_stop="77238" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78634" stop="78292"/>
              <exon start="77357" stop="77238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTGATCGTGGTTATCCTCAGCAGCGGTCTTGTACTCTTGAATTTGATGGTACTTCAAAAGGAAACCCAGGACAAGCTGGTGCAGGAGCTGTAGTACGAGCTGACGATGGAAGTTTGGTAATGATTACTGTTTTGGGTTTGTATTTCCTTTTCCTTGTTCGTTGCTGTACTTATATTACAACTTTGCGATTAATAGATCTGTAGGCTGCGTGAAGGTTTAGGAATAGCAACAACCAGTGTTGCTGAATATCGAGGCTTTATCTTGGGTTTGAAATATGCACATAGCAAAGGGTTTACAAGTATTCGTGCTCAGGGTGATTCCAAACTTGTTTGTATGCAG : ATCCAGGGTCTATGGAAAGTTAAAAATCAAAACATCTCTACGCTATTTCAGCAGGCAAAACAACTAAAGGATAGGTTTTTTTCTTTCCGCATCATTCATGTTCTTCGGGTAATTAATAAA</gDNA_template>
            <first_frame> E  A  D  R  G  Y  P  Q  Q  R  S  C  T  L  E  F  D  G  T  S  K  G  N  P  G  Q  A  G  A  G  A  V  V  R  A  D  D  G  S  L  V  M  I  T  V  L  G  L  Y  F  L  F  L  V  R  C  C  T  Y  I  T  T  L  R  L  I  D  L  *  A  A  *  R  F  R  N  S  N  N  Q  C  C  *  I  S  R  L  Y  L  G  F  E  I  C  T  *  Q  R  V  Y  K  Y  S  C  S  G  *  F  Q  T  C  L  Y  A   : D  P  G  S  M  E  S  *  K  S  K  H  L  Y  A  I  S  A  G  K  T  T  K  G  *  V  F  F  F  P  H  H  S  C  S  S  G  N  *  *  </first_frame>
            <second_frame>  K  L  I  V  V  I  L  S  S  G  L  V  L  L  N  L  M  V  L  Q  K  E  T  Q  D  K  L  V  Q  E  L  *  Y  E  L  T  M  E  V  W  *  *  L  L  F  W  V  C  I  S  F  S  L  F  V  A  V  L  I  L  Q  L  C  D  *  *  I  C  R  L  R  E  G  L  G  I  A  T  T  S  V  A  E  Y  R  G  F  I  L  G  L  K  Y  A  H  S  K  G  F  T  S  I  R  A  Q  G  D  S  K  L  V  C  M  Q  :  I  Q  G  L  W  K  V  K  N  Q  N  I  S  T  L  F  Q  Q  A  K  Q  L  K  D  R  F  F  S  F  R  I  I  H  V  L  R  V  I  N  K </second_frame>
            <third_frame>   S  *  S  W  L  S  S  A  A  V  L  Y  S  *  I  *  W  Y  F  K  R  K  P  R  T  S  W  C  R  S  C  S  T  S  *  R  W  K  F  G  N  D  Y  C  F  G  F  V  F  P  F  P  C  S  L  L  Y  L  Y  Y  N  F  A  I  N  R  S  V  G  C  V  K  V  *  E  *  Q  Q  P  V  L  L  N  I  E  A  L  S  W  V  *  N  M  H  I  A  K  G  L  Q  V  F  V  L  R  V  I  P  N  L  F  V  C  R :   S  R  V  Y  G  K  L  K  I  K  T  S  L  R  Y  F  S  R  Q  N  N  *  R  I  G  F  F  L  S  A  S  F  M  F  F  G  *  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78435" stop="78292"/>
                    <exon start="77357" stop="77238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICRLREGLGIATTSVAEYRGFILGLKYAHSKGFTSIRAQGDSKLVCMQIQGLWKVKNQNISTLFQQAKQLKDRFFSFRIIHVLRVINK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78634" stop="78428"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EADRGYPQQRSCTLEFDGTSKGNPGQAGAGAVVRADDGSLVMITVLGLYFLFLVRCCTYITTLRLIDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83588" e_stop="82850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="83588" e_stop="82850" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83588" stop="82850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTGTGGGATAACAGTGGGTTTGTTGTTATTGTTGATATTCTCAACCATGGGAAAAAAAGGAATACTCTTTCCGTTTTAATTTGTTTTATCTGATTTCACTTTGACAGTGTTAAAAAATATAGAAGACCTTTTGAATCTTACGGTCATAAGCTAAAGATATGTAGATGTACCAAAAATGCTTTTAAACTTGTGATTTTGGACATGTCACGTGGAAGGTTAGAATTAAGGAGTTGCTAAAAAAGGAACGAGGCATTCTTTTTGAAATGGACTAAAAGGGAAAGTAAGATAAACAAATTGAAATGGAGGAAGTATATTGTTTGAAAATAGAGCAGAATATGGACTTTTTATTGGCTGTGTTTGGTATCAGTATGATGAAAGTCATTTTCCATAATAATTGTTTTTTCTAGTTTCTGGTTACCAAAAAAATGTTTTTCTTCAAAAGAGGAAATGACTTCCCTGATAAGAAGTATTTTCCGTACAACTAAACTTTTAGCGTCATGTTTCTTGATCCAACTAACACTTGTTAACACATGTTTCATGTTACAATATTTGGGGAATTTATGTATATACATGCATGCATGGTTCATTTGAGTTAAAAAATTAAAGAAAGCTTTTTTGTGTTTTCTTACTTTTTAGTTTTACAGGAATGCGTCAAGTCTGAGGAAAGTCCCATGTAATGAATTCTTGTTTCATGCATGTTTTGTTGCAATATTGACAAGCACTACATATCTGCCT</gDNA_template>
            <first_frame> S  L  V  G  *  Q  W  V  C  C  Y  C  *  Y  S  Q  P  W  E  K  K  E  Y  S  F  R  F  N  L  F  Y  L  I  S  L  *  Q  C  *  K  I  *  K  T  F  *  I  L  R  S  *  A  K  D  M  *  M  Y  Q  K  C  F  *  T  C  D  F  G  H  V  T  W  K  V  R  I  K  E  L  L  K  K  E  R  G  I  L  F  E  M  D  *  K  G  K  *  D  K  Q  I  E  M  E  E  V  Y  C  L  K  I  E  Q  N  M  D  F  L  L  A  V  F  G  I  S  M  M  K  V  I  F  H  N  N  C  F  F  *  F  L  V  T  K  K  M  F  F  F  K  R  G  N  D  F  P  D  K  K  Y  F  P  Y  N  *  T  F  S  V  M  F  L  D  P  T  N  T  C  *  H  M  F  H  V  T  I  F  G  E  F  M  Y  I  H  A  C  M  V  H  L  S  *  K  I  K  E  S  F  F  V  F  S  Y  F  L  V  L  Q  E  C  V  K  S  E  E  S  P  M  *  *  I  L  V  S  C  M  F  C  C  N  I  D  K  H  Y  I  S  A  </first_frame>
            <second_frame>  H  L  W  D  N  S  G  F  V  V  I  V  D  I  L  N  H  G  K  K  R  N  T  L  S  V  L  I  C  F  I  *  F  H  F  D  S  V  K  K  Y  R  R  P  F  E  S  Y  G  H  K  L  K  I  C  R  C  T  K  N  A  F  K  L  V  I  L  D  M  S  R  G  R  L  E  L  R  S  C  *  K  R  N  E  A  F  F  L  K  W  T  K  R  E  S  K  I  N  K  L  K  W  R  K  Y  I  V  *  K  *  S  R  I  W  T  F  Y  W  L  C  L  V  S  V  *  *  K  S  F  S  I  I  I  V  F  S  S  F  W  L  P  K  K  C  F  S  S  K  E  E  M  T  S  L  I  R  S  I  F  R  T  T  K  L  L  A  S  C  F  L  I  Q  L  T  L  V  N  T  C  F  M  L  Q  Y  L  G  N  L  C  I  Y  M  H  A  W  F  I  *  V  K  K  L  K  K  A  F  L  C  F  L  T  F  *  F  Y  R  N  A  S  S  L  R  K  V  P  C  N  E  F  L  F  H  A  C  F  V  A  I  L  T  S  T  T  Y  L  P </second_frame>
            <third_frame>   T  C  G  I  T  V  G  L  L  L  L  L  I  F  S  T  M  G  K  K  G  I  L  F  P  F  *  F  V  L  S  D  F  T  L  T  V  L  K  N  I  E  D  L  L  N  L  T  V  I  S  *  R  Y  V  D  V  P  K  M  L  L  N  L  *  F  W  T  C  H  V  E  G  *  N  *  G  V  A  K  K  G  T  R  H  S  F  *  N  G  L  K  G  K  V  R  *  T  N  *  N  G  G  S  I  L  F  E  N  R  A  E  Y  G  L  F  I  G  C  V  W  Y  Q  Y  D  E  S  H  F  P  *  *  L  F  F  L  V  S  G  Y  Q  K  N  V  F  L  Q  K  R  K  *  L  P  *  *  E  V  F  S  V  Q  L  N  F  *  R  H  V  S  *  S  N  *  H  L  L  T  H  V  S  C  Y  N  I  W  G  I  Y  V  Y  T  C  M  H  G  S  F  E  L  K  N  *  R  K  L  F  C  V  F  L  L  F  S  F  T  G  M  R  Q  V  *  G  K  S  H  V  M  N  S  C  F  M  H  V  L  L  Q  Y  *  Q  A  L  H  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83209" stop="82994"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFSIIIVFSSFWLPKKCFSSKEEMTSLIRSIFRTTKLLASCFLIQLTLVNTCFMLQYLGNLCIYMHAWFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="98324" PGL_stop="102331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98324" e_stop="98847"/>
            <exon e_start="101506" e_stop="102331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.976" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="98324" e_stop="98847" e_length="524"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.976">
            <gDNA_intron_boundary i_start="98848" i_stop="101505" i_length="2658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101506" e_stop="102331" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98324" stop="98710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98614" stop="98847"/>
              <exon start="101506" stop="101726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="98847"/>
              <exon start="101506" stop="102085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="98847"/>
              <exon start="101506" stop="101979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="98847"/>
              <exon start="101506" stop="101959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98822" stop="98847"/>
              <exon start="101506" stop="101955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101735" stop="102331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGATGGGTGCAACCACCGTGAACGGCGGCGATTCAGAATCGACATCACTGTTAACTCCTTCAAATCCTAAAATTCCGAAGGACAGTTTCCACATAGCTTACATAATCTACTTTACTCTCGGTGCCGGTTATCTACTCCCATGGAACGCATTCATCACCGCCGTCGATTACTTCAGTTACCTTTACCCGGACGTTATGGTAGATCGTATCTTTGCCATTGTTTACATGATCGTCGGATTGATCGGTTTGCTTTTCATTGTTGCTTTTTCTAATAAGACTAGTGCTTTTGTTAGGATTAATGTTGGAATGTTTTTATTTGTGGTTGCGCTTGTTACGGTGCCGTTGATGGATGTGTTTTATGTGGATGGGAGAGTTGGAGTGTATGCCGGTTTTGGTGTTACTGTTGGTTTGGTTGGAATTTGTGGAATTGCTGATGCGTTGGTTCAGGGTGGAGTTGTTGGAGCTGCCGGTGAGTTGCCGGAACGGTATATGCAGGCCACTTTCGCCGGAACTGCTGCTTCTG : GTGTACTTGTTTCGTTGCTAAGAATTTTAACCAAAGCTGTATATCCACAAGATGCTAATGGGCTGAGAAAGAGTGCAAACCTTTATTTTATTTTCAGCATTGCTGTGATGATTCTGTGCATAGTCTTTTACAATATTGCACATAGGCTTCCAATAATTAAGTACTACAATGATCTTAAAACTCAGGCAGTGAACGAGGAGAAAGAGGATAAGGGCGACTTAACTCCAGAATTATGGAGATCAACTCTGGACATTTTTGGGACTGTGAAATGGTATGGTTTTGGCATTGTCAGTCTTTATGTGGTCACCTTGTCTATATTTCCCGGATATATCACAGAAGACGTGCATTCTCAACTTCTGAAGGATTGGTATCCGATCTTGTTGATTACTGGCTACAATGTGTTTGATCTGGTGGGGAAGTCTCTGACTCCTGTATTATTTTTTGATGATGCCAAGGTTGCTATTGGTGCCTGCTTCGCAAGGTTGTTGTTTTTGCCTCTATTCTACGTTTGCTTACATGGGCCTGAATTCTTTAGGACGGAGCTTCCTGTCACAATACTAACCTGTTTACTGGGATTGACTAACGGCTACCTGACTAGTTTGTTAATGATCTTGGGTCCAAAAACTGTCCAACTGCAACACGCAGAGATAGCTGGGACCTTACTCGTTTTGTTCTTGGTGATGGGTCTGGCAATTGGTTCCGTTGTATCATGGTTCTGGATTATATAGTTTCTCAGCAGCTTGTAAGATATCCGTTCCCCGTAAAACCTATTGCTACTCAAAAACTGTGAAAACTTATTTATTCATGCCATTTCAAATGTTTATTT</gDNA_template>
            <first_frame> G  D  G  C  N  H  R  E  R  R  R  F  R  I  D  I  T  V  N  S  F  K  S  *  N  S  E  G  Q  F  P  H  S  L  H  N  L  L  Y  S  R  C  R  L  S  T  P  M  E  R  I  H  H  R  R  R  L  L  Q  L  P  L  P  G  R  Y  G  R  S  Y  L  C  H  C  L  H  D  R  R  I  D  R  F  A  F  H  C  C  F  F  *  *  D  *  C  F  C  *  D  *  C  W  N  V  F  I  C  G  C  A  C  Y  G  A  V  D  G  C  V  L  C  G  W  E  S  W  S  V  C  R  F  W  C  Y  C  W  F  G  W  N  L  W  N  C  *  C  V  G  S  G  W  S  C  W  S  C  R  *  V  A  G  T  V  Y  A  G  H  F  R  R  N  C  C  F  W :   C  T  C  F  V  A  K  N  F  N  Q  S  C  I  S  T  R  C  *  W  A  E  K  E  C  K  P  L  F  Y  F  Q  H  C  C  D  D  S  V  H  S  L  L  Q  Y  C  T  *  A  S  N  N  *  V  L  Q  *  S  *  N  S  G  S  E  R  G  E  R  G  *  G  R  L  N  S  R  I  M  E  I  N  S  G  H  F  W  D  C  E  M  V  W  F  W  H  C  Q  S  L  C  G  H  L  V  Y  I  S  R  I  Y  H  R  R  R  A  F  S  T  S  E  G  L  V  S  D  L  V  D  Y  W  L  Q  C  V  *  S  G  G  E  V  S  D  S  C  I  I  F  *  *  C  Q  G  C  Y  W  C  L  L  R  K  V  V  V  F  A  S  I  L  R  L  L  T  W  A  *  I  L  *  D  G  A  S  C  H  N  T  N  L  F  T  G  I  D  *  R  L  P  D  *  F  V  N  D  L  G  S  K  N  C  P  T  A  T  R  R  D  S  W  D  L  T  R  F  V  L  G  D  G  S  G  N  W  F  R  C  I  M  V  L  D  Y  I  V  S  Q  Q  L  V  R  Y  P  F  P  V  K  P  I  A  T  Q  K  L  *  K  L  I  Y  S  C  H  F  K  C  L  F </first_frame>
            <second_frame>  A  M  G  A  T  T  V  N  G  G  D  S  E  S  T  S  L  L  T  P  S  N  P  K  I  P  K  D  S  F  H  I  A  Y  I  I  Y  F  T  L  G  A  G  Y  L  L  P  W  N  A  F  I  T  A  V  D  Y  F  S  Y  L  Y  P  D  V  M  V  D  R  I  F  A  I  V  Y  M  I  V  G  L  I  G  L  L  F  I  V  A  F  S  N  K  T  S  A  F  V  R  I  N  V  G  M  F  L  F  V  V  A  L  V  T  V  P  L  M  D  V  F  Y  V  D  G  R  V  G  V  Y  A  G  F  G  V  T  V  G  L  V  G  I  C  G  I  A  D  A  L  V  Q  G  G  V  V  G  A  A  G  E  L  P  E  R  Y  M  Q  A  T  F  A  G  T  A  A  S   : G  V  L  V  S  L  L  R  I  L  T  K  A  V  Y  P  Q  D  A  N  G  L  R  K  S  A  N  L  Y  F  I  F  S  I  A  V  M  I  L  C  I  V  F  Y  N  I  A  H  R  L  P  I  I  K  Y  Y  N  D  L  K  T  Q  A  V  N  E  E  K  E  D  K  G  D  L  T  P  E  L  W  R  S  T  L  D  I  F  G  T  V  K  W  Y  G  F  G  I  V  S  L  Y  V  V  T  L  S  I  F  P  G  Y  I  T  E  D  V  H  S  Q  L  L  K  D  W  Y  P  I  L  L  I  T  G  Y  N  V  F  D  L  V  G  K  S  L  T  P  V  L  F  F  D  D  A  K  V  A  I  G  A  C  F  A  R  L  L  F  L  P  L  F  Y  V  C  L  H  G  P  E  F  F  R  T  E  L  P  V  T  I  L  T  C  L  L  G  L  T  N  G  Y  L  T  S  L  L  M  I  L  G  P  K  T  V  Q  L  Q  H  A  E  I  A  G  T  L  L  V  L  F  L  V  M  G  L  A  I  G  S  V  V  S  W  F  W  I  I  *  F  L  S  S  L  *  D  I  R  S  P  *  N  L  L  L  L  K  N  C  E  N  L  F  I  H  A  I  S  N  V  Y   </second_frame>
            <third_frame>   R  W  V  Q  P  P  *  T  A  A  I  Q  N  R  H  H  C  *  L  L  Q  I  L  K  F  R  R  T  V  S  T  *  L  T  *  S  T  L  L  S  V  P  V  I  Y  S  H  G  T  H  S  S  P  P  S  I  T  S  V  T  F  T  R  T  L  W  *  I  V  S  L  P  L  F  T  *  S  S  D  *  S  V  C  F  S  L  L  L  F  L  I  R  L  V  L  L  L  G  L  M  L  E  C  F  Y  L  W  L  R  L  L  R  C  R  *  W  M  C  F  M  W  M  G  E  L  E  C  M  P  V  L  V  L  L  L  V  W  L  E  F  V  E  L  L  M  R  W  F  R  V  E  L  L  E  L  P  V  S  C  R  N  G  I  C  R  P  L  S  P  E  L  L  L  L  :  V  Y  L  F  R  C  *  E  F  *  P  K  L  Y  I  H  K  M  L  M  G  *  E  R  V  Q  T  F  I  L  F  S  A  L  L  *  *  F  C  A  *  S  F  T  I  L  H  I  G  F  Q  *  L  S  T  T  M  I  L  K  L  R  Q  *  T  R  R  K  R  I  R  A  T  *  L  Q  N  Y  G  D  Q  L  W  T  F  L  G  L  *  N  G  M  V  L  A  L  S  V  F  M  W  S  P  C  L  Y  F  P  D  I  S  Q  K  T  C  I  L  N  F  *  R  I  G  I  R  S  C  *  L  L  A  T  M  C  L  I  W  W  G  S  L  *  L  L  Y  Y  F  L  M  M  P  R  L  L  L  V  P  A  S  Q  G  C  C  F  C  L  Y  S  T  F  A  Y  M  G  L  N  S  L  G  R  S  F  L  S  Q  Y  *  P  V  Y  W  D  *  L  T  A  T  *  L  V  C  *  *  S  W  V  Q  K  L  S  N  C  N  T  Q  R  *  L  G  P  Y  S  F  C  S  W  *  W  V  W  Q  L  V  P  L  Y  H  G  S  G  L  Y  S  F  S  A  A  C  K  I  S  V  P  R  K  T  Y  C  Y  S  K  T  V  K  T  Y  L  F  M  P  F  Q  M  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98325" stop="98847"/>
                    <exon start="101506" stop="102233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMGATTVNGGDSESTSLLTPSNPKIPKDSFHIAYIIYFTLGAGYLLPWNAFITAVDYFSYLYPDVMVDRIFAIVYMIVGLIGLLFIVAFSNKTSAFVRINVGMFLFVVALVTVPLMDVFYVDGRVGVYAGFGVTVGLVGICGIADALVQGGVVGAAGELPERYMQATFAGTAASGVLVSLLRILTKAVYPQDANGLRKSANLYFIFSIAVMILCIVFYNIAHRLPIIKYYNDLKTQAVNEEKEDKGDLTPELWRSTLDIFGTVKWYGFGIVSLYVVTLSIFPGYITEDVHSQLLKDWYPILLITGYNVFDLVGKSLTPVLFFDDAKVAIGACFARLLFLPLFYVCLHGPEFFRTELPVTILTCLLGLTNGYLTSLLMILGPKTVQLQHAEIAGTLLVLFLVMGLAIGSVVSWFWII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="102936" PGL_stop="102610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102936" e_stop="102610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102936" e_stop="102610" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102936" stop="102610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102936" stop="102619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102935" stop="102610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102933" stop="102610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATAACTGCAAAAACAACTGAGATGATTATAATAGACTTGGTTGCTGAAGCAGCTAGAATACGAGGATCTTCCAGTAACGATGGTTCCCGGGGTTTGAAGGTAAACGAAGAATCCTCCATTGAATCTCAAGTAAGCGATATTCGTGATATTAAAGAAAGGTGGGCCTTAAGAAGAAGAACATCAAGGCATCATCGAAGATCATCTTCGATTGCCAAGTAATTGTTGAGAGTACATTCCTTGTTGTATCATATGTACTCTCTATTAAAGTGTGATATACTTTTCTTTTCAATCTGTTCCAAAAAGAATATCGTATCAACACTTTAAA</gDNA_template>
            <first_frame> E  *  L  Q  K  Q  L  R  *  L  *  *  T  W  L  L  K  Q  L  E  Y  E  D  L  P  V  T  M  V  P  G  V  *  R  *  T  K  N  P  P  L  N  L  K  *  A  I  F  V  I  L  K  K  G  G  P  *  E  E  E  H  Q  G  I  I  E  D  H  L  R  L  P  S  N  C  *  E  Y  I  P  C  C  I  I  C  T  L  Y  *  S  V  I  Y  F  S  F  Q  S  V  P  K  R  I  S  Y  Q  H  F  K </first_frame>
            <second_frame>  N  N  C  K  N  N  *  D  D  Y  N  R  L  G  C  *  S  S  *  N  T  R  I  F  Q  *  R  W  F  P  G  F  E  G  K  R  R  I  L  H  *  I  S  S  K  R  Y  S  *  Y  *  R  K  V  G  L  K  K  K  N  I  K  A  S  S  K  I  I  F  D  C  Q  V  I  V  E  S  T  F  L  V  V  S  Y  V  L  S  I  K  V  *  Y  T  F  L  F  N  L  F  Q  K  E  Y  R  I  N  T  L   </second_frame>
            <third_frame>   I  T  A  K  T  T  E  M  I  I  I  D  L  V  A  E  A  A  R  I  R  G  S  S  S  N  D  G  S  R  G  L  K  V  N  E  E  S  S  I  E  S  Q  V  S  D  I  R  D  I  K  E  R  W  A  L  R  R  R  T  S  R  H  H  R  R  S  S  S  I  A  K  *  L  L  R  V  H  S  L  L  Y  H  M  Y  S  L  L  K  C  D  I  L  F  F  S  I  C  S  K  K  N  I  V  S  T  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102934" stop="102716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITAKTTEMIIIDLVAEAARIRGSSSNDGSRGLKVNEESSIESQVSDIRDIKERWALRRRTSRHHRRSSSIAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="107195" PGL_stop="103135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107195" e_stop="107072"/>
            <exon e_start="105498" e_stop="105358"/>
            <exon e_start="105271" e_stop="105119"/>
            <exon e_start="104693" e_stop="104571"/>
            <exon e_start="104409" e_stop="104266"/>
            <exon e_start="103165" e_stop="103135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.992" e_score="0.965"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107195" e_stop="107072" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107071" i_stop="105499" i_length="1573"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105498" e_stop="105358" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105271" e_stop="105119" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.971">
            <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104693" e_stop="104571" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104570" i_stop="104410" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="104409" e_stop="104266" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.891" acc_prob="0.992">
            <gDNA_intron_boundary i_start="104265" i_stop="103166" i_length="1100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103165" e_stop="103135" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107195" stop="107072"/>
              <exon start="105498" stop="105358"/>
              <exon start="105271" stop="105119"/>
              <exon start="104693" stop="104571"/>
              <exon start="104409" stop="104266"/>
              <exon start="103165" stop="103135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAATGAACTTCTTCATATAACAAACTCAAAAAACGGAACGCCACTCAAATTAACAATCAAAATGCACAAATTCTCAGCAATTTCTCAACTTGTTAAGCTTTGGATTTGAAGTATTTTTTAG : GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG : TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG : GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCCCAGATACCGTGTTTGACATTGTAACCGACCCTGAAAATAGACGAGTCTTCAAGAATATCAAG : GAAGTATTATCGCGGAAGGTGTTGGTTGATGAAGGTTCAAGGCAAGTAGTGGAACTAGACCAAGCCGCTATATGGAAATTTCTTTGGTGGTCAGGAACAATATCTGTTCATGTATTAGTCGACCAAAACAGAGAAGACTACACG : ATGAAGTTCAAGCAAGTGAAAACTGGATTCA</gDNA_template>
            <first_frame> V  K  *  T  S  S  Y  N  K  L  K  K  R  N  A  T  Q  I  N  N  Q  N  A  Q  I  L  S  N  F  S  T  C  *  A  L  D  L  K  Y  F  L   : G  S  D  *  F  N  E  D  G  G  S  G  N  R  N  T  G  E  H  E  Q  C  T  *  *  I  A  S  S  N  D  P  V  Y  F  L  R  I  P  G  K  G  P  R  V  C  *   : V  K  F  Q  K  I  E  N  R  S  *  *  I  N  H  E  R  *  *  Q  R  S  N  F  S  H  R  C  G  *  R  E  A  I  T  I  L  E  R  E  P  E  L  G  *  S  P  A  I  C  K   : G  K  C  T  Q  R  F  S  L  *  P  E  C  E  S  *  Y  W  T  P  P  R  Y  R  V  *  H  C  N  R  P  *  K  *  T  S  L  Q  E  Y  Q   : G  S  I  I  A  E  G  V  G  *  *  R  F  K  A  S  S  G  T  R  P  S  R  Y  M  E  I  S  L  V  V  R  N  N  I  C  S  C  I  S  R  P  K  Q  R  R  L  H   : D  E  V  Q  A  S  E  N  W  I   </first_frame>
            <second_frame>  *  N  E  L  L  H  I  T  N  S  K  N  G  T  P  L  K  L  T  I  K  M  H  K  F  S  A  I  S  Q  L  V  K  L  W  I  *  S  I  F  *  :  V  L  I  S  S  M  K  T  E  G  Q  G  I  E  I  L  E  N  T  S  N  V  H  N  R  L  P  R  P  M  I  Q  S  I  F  S  G  F  Q  E  K  V  Q  E  C  V  K  :  S  N  F  K  R  L  K  I  A  H  D  K  S  I  T  R  G  N  N  K  G  A  T  L  V  I  D  V  D  K  E  K  Q  L  Q  S  W  K  E  N  P  S  W  V  D  P  P  P  Y  V  K  :  V  S  V  P  K  G  S  L  C  N  L  N  V  K  V  N  I  G  L  P  P  D  T  V  F  D  I  V  T  D  P  E  N  R  R  V  F  K  N  I  K  :  E  V  L  S  R  K  V  L  V  D  E  G  S  R  Q  V  V  E  L  D  Q  A  A  I  W  K  F  L  W  W  S  G  T  I  S  V  H  V  L  V  D  Q  N  R  E  D  Y  T  :  M  K  F  K  Q  V  K  T  G  F  </second_frame>
            <third_frame>   K  M  N  F  F  I  *  Q  T  Q  K  T  E  R  H  S  N  *  Q  S  K  C  T  N  S  Q  Q  F  L  N  L  L  S  F  G  F  E  V  F  F  R :   F  *  L  V  Q  *  R  R  R  V  R  E  *  K  Y  W  R  T  R  A  M  Y  I  I  D  C  L  V  Q  *  S  S  L  F  S  Q  D  S  R  K  R  S  K  S  V  L  S :   Q  I  S  K  D  *  K  S  L  M  I  N  Q  S  R  E  V  I  T  K  E  Q  L  *  S  *  M  W  I  K  R  S  N  Y  N  L  G  K  R  T  R  V  G  L  I  P  R  H  M  *  R :   *  V  Y  P  K  V  L  F  V  T  *  M  *  K  L  I  L  D  S  P  Q  I  P  C  L  T  L  *  P  T  L  K  I  D  E  S  S  R  I  S  R :   K  Y  Y  R  G  R  C  W  L  M  K  V  Q  G  K  *  W  N  *  T  K  P  L  Y  G  N  F  F  G  G  Q  E  Q  Y  L  F  M  Y  *  S  T  K  T  E  K  T  T  R :   *  S  S  S  K  *  K  L  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105498" stop="105358"/>
                    <exon start="105271" stop="105119"/>
                    <exon start="104693" stop="104571"/>
                    <exon start="104409" stop="104266"/>
                    <exon start="103165" stop="103136"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLISSMKTEGQGIEILENTSNVHNRLPRPMIQSIFSGFQEKVQECVKSNFKRLKIAHDKSITRGNNKGATLVIDVDKEKQLQSWKENPSWVDPPPYVKVSVPKGSLCNLNVKVNIGLPPDTVFDIVTDPENRRVFKNIKEVLSRKVLVDEGSRQVVELDQAAIWKFLWWSGTISVHVLVDQNREDYTMKFKQVKTGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106317" e_stop="106150"/>
            <exon e_start="105498" e_stop="105358"/>
            <exon e_start="105271" e_stop="105119"/>
            <exon e_start="104693" e_stop="104633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106317" e_stop="106150" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106149" i_stop="105499" i_length="651"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105498" e_stop="105358" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105357" i_stop="105272" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105271" e_stop="105119" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.971">
            <gDNA_intron_boundary i_start="105118" i_stop="104694" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104693" e_stop="104633" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106317" stop="106150"/>
              <exon start="105498" stop="105358"/>
              <exon start="105271" stop="105119"/>
              <exon start="104693" stop="104633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTAGTTTGCTCGCGGCGTTATTTGACAGAGACCAGAAAGTTGGCTCTCTTTACTTTAAGAGCATGTTGATTCCAAAAGATTTTGTTTTTCCAACTTCAAAATCGAAAGAAGGAATCCGTGAAAGACTGCATCTCCTGTTGATATGGTGAATTTGTCTCAAGATTGA : GTTCTGATTAGTTCAATGAAGACGGAGGGTCAGGGAATAGAAATACTGGAGAACACGAGCAATGTACATAATAGATTGCCTCGTCCAATGATCCAGTCTATTTTCTCAGGATTCCAGGAAAAGGTCCAAGAGTGTGTTAAG : TCAAATTTCAAAAGATTGAAAATCGCTCATGATAAATCAATCACGAGAGGTAATAACAAAGGAGCAACTTTAGTCATAGATGTGGATAAAGAGAAGCAATTACAATCTTGGAAAGAGAACCCGAGTTGGGTTGATCCCCCGCCATATGTAAAG : GTAAGTGTACCCAAAGGTTCTCTTTGTAACCTGAATGTGAAAGTTAATATTGGACTCCCCC</gDNA_template>
            <first_frame> F  *  F  A  R  G  V  I  *  Q  R  P  E  S  W  L  S  L  L  *  E  H  V  D  S  K  R  F  C  F  S  N  F  K  I  E  R  R  N  P  *  K  T  A  S  P  V  D  M  V  N  L  S  Q  D  *  :  V  L  I  S  S  M  K  T  E  G  Q  G  I  E  I  L  E  N  T  S  N  V  H  N  R  L  P  R  P  M  I  Q  S  I  F  S  G  F  Q  E  K  V  Q  E  C  V  K  :  S  N  F  K  R  L  K  I  A  H  D  K  S  I  T  R  G  N  N  K  G  A  T  L  V  I  D  V  D  K  E  K  Q  L  Q  S  W  K  E  N  P  S  W  V  D  P  P  P  Y  V  K  :  V  S  V  P  K  G  S  L  C  N  L  N  V  K  V  N  I  G  L  P  </first_frame>
            <second_frame>  F  S  L  L  A  A  L  F  D  R  D  Q  K  V  G  S  L  Y  F  K  S  M  L  I  P  K  D  F  V  F  P  T  S  K  S  K  E  G  I  R  E  R  L  H  L  L  L  I  W  *  I  C  L  K  I  E :   F  *  L  V  Q  *  R  R  R  V  R  E  *  K  Y  W  R  T  R  A  M  Y  I  I  D  C  L  V  Q  *  S  S  L  F  S  Q  D  S  R  K  R  S  K  S  V  L  S :   Q  I  S  K  D  *  K  S  L  M  I  N  Q  S  R  E  V  I  T  K  E  Q  L  *  S  *  M  W  I  K  R  S  N  Y  N  L  G  K  R  T  R  V  G  L  I  P  R  H  M  *  R :   *  V  Y  P  K  V  L  F  V  T  *  M  *  K  L  I  L  D  S  P </second_frame>
            <third_frame>   L  V  C  S  R  R  Y  L  T  E  T  R  K  L  A  L  F  T  L  R  A  C  *  F  Q  K  I  L  F  F  Q  L  Q  N  R  K  K  E  S  V  K  D  C  I  S  C  *  Y  G  E  F  V  S  R  L   : S  S  D  *  F  N  E  D  G  G  S  G  N  R  N  T  G  E  H  E  Q  C  T  *  *  I  A  S  S  N  D  P  V  Y  F  L  R  I  P  G  K  G  P  R  V  C  *   : V  K  F  Q  K  I  E  N  R  S  *  *  I  N  H  E  R  *  *  Q  R  S  N  F  S  H  R  C  G  *  R  E  A  I  T  I  L  E  R  E  P  E  L  G  *  S  P  A  I  C  K   : G  K  C  T  Q  R  F  S  L  *  P  E  C  E  S  *  Y  W  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105498" stop="105358"/>
                    <exon start="105271" stop="105119"/>
                    <exon start="104693" stop="104634"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLISSMKTEGQGIEILENTSNVHNRLPRPMIQSIFSGFQEKVQECVKSNFKRLKIAHDKSITRGNNKGATLVIDVDKEKQLQSWKENPSWVDPPPYVKVSVPKGSLCNLNVKVNIGLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="112446" PGL_stop="107631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112446" e_stop="112364"/>
            <exon e_start="111652" e_stop="111483"/>
            <exon e_start="110504" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108396"/>
            <exon e_start="107664" e_stop="107631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.970" e_score="1.000"/>
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              <exon start="112386" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112385" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112384" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111639" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111635" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111634" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111623" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111623" stop="111483"/>
              <exon start="110504" stop="110443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111611" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111607" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111599" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111589" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111583" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111582" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111563" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110498" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
              <exon start="107664" stop="107631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110492" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
              <exon start="107664" stop="107653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110273" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110272" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286846" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110263" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110262" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110260" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110249" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110233" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110207" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109061" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109046" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109038" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109008" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108975" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108844" stop="108783"/>
              <exon start="108701" stop="108490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108829" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108813" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288998" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108799" stop="108783"/>
              <exon start="108701" stop="108486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG : GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG : GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTC : AAATTCAAAAAATCGACTAAATTGATTTGGTTTT</gDNA_template>
            <first_frame> L  K  L  S  L  S  L  S  L  S  Q  F  S  C  F  L  S  L  D  P  S  L  P  K  L  F  F  R :   D  R  *  E  E  R  E  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  K  L  G  E  I  V  T  T  I  P  T  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  *  N  A  Y  Q  I  P  *  Y  K  N  Y  C  G  I  K  N  F  :  K  F  K  K  S  T  K  L  I  W  F  </first_frame>
            <second_frame>  S  S  S  L  S  L  S  L  S  L  N  S  R  A  F  S  H  *  I  P  L  C  P  S  C  S  S   : G  I  V  K  K  K  E  K  W  G  *  H  S  P  S  F  S  A  G  Y  L  P  R  R  K  C  A  S  S  W  L  D  S  M  Q  L  V  R  P  P  Y  C  T  S  S  S  W  E  K  S  S  P  P  F  Q  L  L  :  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F  K  M  H  I  K  Y  H  N  I  K  T  T  V  V  L  K  I  S :   N  S  K  N  R  L  N  *  F  G  F </second_frame>
            <third_frame>   Q  A  L  S  L  S  L  S  L  S  I  L  V  L  S  L  T  R  S  L  F  A  Q  A  V  L  Q  :  G  S  L  R  R  K  R  N  G  V  D  I  H  Q  A  F  Q  P  A  I  C  Q  E  G  N  A  H  P  H  G  W  T  R  C  S  W  *  D  H  H  I  V  Q  A  Q  A  G  R  N  R  H  H  H  S  N  Y  W :   F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N  L  K  C  I  S  N  T  I  I  *  K  L  L  W  Y  *  K  F   : Q  I  Q  K  I  D  *  I  D  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111642" stop="111483"/>
                    <exon start="110504" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEREMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112446" e_stop="112364"/>
            <exon e_start="111652" e_stop="111483"/>
            <exon e_start="110504" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112446" e_stop="112364" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111652" e_stop="111483" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.970">
            <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110504" e_stop="110434" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110157" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109064" e_stop="108946" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="108701" e_stop="108387" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112446" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112440" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112438" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112438" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112437" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112432" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112432" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112430" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112430" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112430" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112416" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112415" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112415" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112415" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112414" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112411" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112410" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112410" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112410" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112409" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112409" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112407" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112407" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108844" stop="108783"/>
              <exon start="108701" stop="108490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108829" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108813" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288998" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108799" stop="108783"/>
              <exon start="108701" stop="108486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG : GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG : GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTCATTTCAACT</gDNA_template>
            <first_frame> L  K  L  S  L  S  L  S  L  S  Q  F  S  C  F  L  S  L  D  P  S  L  P  K  L  F  F  R :   D  R  *  E  E  R  E  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  K  L  G  E  I  V  T  T  I  P  T  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  *  N  A  Y  Q  I  P  *  Y  K  N  Y  C  G  I  K  N  F  I  S  T </first_frame>
            <second_frame>  S  S  S  L  S  L  S  L  S  L  N  S  R  A  F  S  H  *  I  P  L  C  P  S  C  S  S   : G  I  V  K  K  K  E  K  W  G  *  H  S  P  S  F  S  A  G  Y  L  P  R  R  K  C  A  S  S  W  L  D  S  M  Q  L  V  R  P  P  Y  C  T  S  S  S  W  E  K  S  S  P  P  F  Q  L  L  :  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F  K  M  H  I  K  Y  H  N  I  K  T  T  V  V  L  K  I  S  F  Q   </second_frame>
            <third_frame>   Q  A  L  S  L  S  L  S  L  S  I  L  V  L  S  L  T  R  S  L  F  A  Q  A  V  L  Q  :  G  S  L  R  R  K  R  N  G  V  D  I  H  Q  A  F  Q  P  A  I  C  Q  E  G  N  A  H  P  H  G  W  T  R  C  S  W  *  D  H  H  I  V  Q  A  Q  A  G  R  N  R  H  H  H  S  N  Y  W :   F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N  L  K  C  I  S  N  T  I  I  *  K  L  L  W  Y  *  K  F  H  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111642" stop="111483"/>
                    <exon start="110504" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEREMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112446" e_stop="112364"/>
            <exon e_start="111652" e_stop="111483"/>
            <exon e_start="110504" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108500"/>
            <exon e_start="107767" e_stop="107706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.613"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112446" e_stop="112364" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111652" e_stop="111483" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.970">
            <gDNA_intron_boundary i_start="111482" i_stop="110505" i_length="978"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110504" e_stop="110434" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110157" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109064" e_stop="108946" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108701" e_stop="108500" e_length="202"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108499" i_stop="107768" i_length="732"/>
          </intron>
          <exon e_serial="8" e_score="0.613">
            <gDNA_exon_boundary e_start="107767" e_stop="107706" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112446" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112438" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112438" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112437" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112432" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112432" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112430" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112430" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112415" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112415" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112415" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112414" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112411" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112410" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112410" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112410" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112409" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112409" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112407" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112407" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112406" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112405" stop="112364"/>
              <exon start="111652" stop="111483"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112405" stop="112364"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112405" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112405" stop="112364"/>
              <exon start="111652" stop="111483"/>
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              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112404" stop="112364"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112404" stop="112364"/>
              <exon start="111652" stop="111483"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112404" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112401" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112401" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112401" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112401" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112399" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112399" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112396" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112386" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="109030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112385" stop="112364"/>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112384" stop="112364"/>
              <exon start="111652" stop="111483"/>
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              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
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              <exon start="109064" stop="108966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111652" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111639" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111635" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111634" stop="111483"/>
              <exon start="110504" stop="110434"/>
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              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111623" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111623" stop="111483"/>
              <exon start="110504" stop="110443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111607" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111599" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111589" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111583" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111582" stop="111483"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110273" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110249" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109038" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109005" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108500"/>
              <exon start="107767" stop="107706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAGCTCTCTCTCTCTCTCTCTCTCTCTCAATTCTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG : GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCATATTGTACAAGCTCAAGCTGGGAGAAATCGTCACCACCATTCCAACTATTG : GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTT : AAGAAAGAGAAACAGAGTAAAGCGGAAATAAATAAAAACTGAATGAAATCGACAATAACCAA</gDNA_template>
            <first_frame> L  K  L  S  L  S  L  S  L  S  Q  F  S  C  F  L  S  L  D  P  S  L  P  K  L  F  F  R :   D  R  *  E  E  R  E  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  K  L  G  E  I  V  T  T  I  P  T  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L   : *  E  R  E  T  E  *  S  G  N  K  *  K  L  N  E  I  D  N  N  Q </first_frame>
            <second_frame>  S  S  S  L  S  L  S  L  S  L  N  S  R  A  F  S  H  *  I  P  L  C  P  S  C  S  S   : G  I  V  K  K  K  E  K  W  G  *  H  S  P  S  F  S  A  G  Y  L  P  R  R  K  C  A  S  S  W  L  D  S  M  Q  L  V  R  P  P  Y  C  T  S  S  S  W  E  K  S  S  P  P  F  Q  L  L  :  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  :  K  K  E  K  Q  S  K  A  E  I  N  K  N  *  M  K  S  T  I  T   </second_frame>
            <third_frame>   Q  A  L  S  L  S  L  S  L  S  I  L  V  L  S  L  T  R  S  L  F  A  Q  A  V  L  Q  :  G  S  L  R  R  K  R  N  G  V  D  I  H  Q  A  F  Q  P  A  I  C  Q  E  G  N  A  H  P  H  G  W  T  R  C  S  W  *  D  H  H  I  V  Q  A  Q  A  G  R  N  R  H  H  H  S  N  Y  W :   F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L :   R  K  R  N  R  V  K  R  K  *  I  K  T  E  *  N  R  Q  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111642" stop="111483"/>
                    <exon start="110504" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEREMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="110673" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108396"/>
            <exon e_start="107664" e_stop="107631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.203" e_score="0.993"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110673" e_stop="110434" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110157" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109064" e_stop="108946" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="108701" e_stop="108396" e_length="306"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.203">
            <gDNA_intron_boundary i_start="108395" i_stop="107665" i_length="731"/>
          </intron>
          <exon e_serial="6" e_score="0.750">
            <gDNA_exon_boundary e_start="107664" e_stop="107631" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110673" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110498" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
              <exon start="107664" stop="107631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110492" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
              <exon start="107664" stop="107653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110273" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110272" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286846" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110263" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110262" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110260" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110249" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110233" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110207" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109061" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109046" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109038" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109008" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108975" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108844" stop="108783"/>
              <exon start="108701" stop="108490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108829" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108813" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288998" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108799" stop="108783"/>
              <exon start="108701" stop="108486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGGAAGTATTAATTCTGATTAATGATTTATTTTCTCTGCTCTGTGTAGCAAAAGCCTAGTGTTACTGAAGATTTTATCTTGTATTGTCTGCCTGTTATCAGTTTAATAAGATGTTGATAACATAGCTCCTAAGATGAGCTATCAATAATAATTGATAAATTTCAGGTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTC : AAATTCAAAAAATCGACTAAATTGATTTGGTTTT</gDNA_template>
            <first_frame> K  R  E  V  L  I  L  I  N  D  L  F  S  L  L  C  V  A  K  A  *  C  Y  *  R  F  Y  L  V  L  S  A  C  Y  Q  F  N  K  M  L  I  T  *  L  L  R  *  A  I  N  N  N  *  *  I  S  G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  *  N  A  Y  Q  I  P  *  Y  K  N  Y  C  G  I  K  N  F  :  K  F  K  K  S  T  K  L  I  W  F  </first_frame>
            <second_frame>  K  G  K  Y  *  F  *  L  M  I  Y  F  L  C  S  V  *  Q  K  P  S  V  T  E  D  F  I  L  Y  C  L  P  V  I  S  L  I  R  C  *  *  H  S  S  *  D  E  L  S  I  I  I  D  K  F  Q  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F  K  M  H  I  K  Y  H  N  I  K  T  T  V  V  L  K  I  S :   N  S  K  N  R  L  N  *  F  G  F </second_frame>
            <third_frame>   K  G  S  I  N  S  D  *  *  F  I  F  S  A  L  C  S  K  S  L  V  L  L  K  I  L  S  C  I  V  C  L  L  S  V  *  *  D  V  D  N  I  A  P  K  M  S  Y  Q  *  *  L  I  N  F  R  F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N  L  K  C  I  S  N  T  I  I  *  K  L  L  W  Y  *  K  F   : Q  I  Q  K  I  D  *  I  D  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110511" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="112411" e_stop="112364"/>
            <exon e_start="111652" e_stop="111533"/>
            <exon e_start="111381" e_stop="111370"/>
            <exon e_start="110504" e_stop="110434"/>
            <exon e_start="110276" e_stop="110157"/>
            <exon e_start="109064" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108396"/>
            <exon e_start="107664" e_stop="107631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.190" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="0.667"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.203" e_score="0.993"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112411" e_stop="112364" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112363" i_stop="111653" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111652" e_stop="111533" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.190">
            <gDNA_intron_boundary i_start="111532" i_stop="111382" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="111381" e_stop="111370" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="111369" i_stop="110505" i_length="865"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110504" e_stop="110434" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110433" i_stop="110277" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110276" e_stop="110157" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110156" i_stop="109065" i_length="1092"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109064" e_stop="108946" e_length="119"/>
          </exon>
          <intron i_serial="6" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="108701" e_stop="108396" e_length="306"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.203">
            <gDNA_intron_boundary i_start="108395" i_stop="107665" i_length="731"/>
          </intron>
          <exon e_serial="9" e_score="0.750">
            <gDNA_exon_boundary e_start="107664" e_stop="107631" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112411" stop="112364"/>
              <exon start="111652" stop="111533"/>
              <exon start="111381" stop="111370"/>
              <exon start="110504" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110498" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
              <exon start="107664" stop="107631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110492" stop="110434"/>
              <exon start="110276" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
              <exon start="107664" stop="107653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110273" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110272" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286846" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110263" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110262" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110260" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110249" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110242" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110233" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110207" stop="110157"/>
              <exon start="109064" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109061" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109046" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109038" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109008" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108975" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108844" stop="108783"/>
              <exon start="108701" stop="108490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108829" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108813" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288998" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108799" stop="108783"/>
              <exon start="108701" stop="108486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGTGCTTTCTCTCACTAGATCCCTCTTTGCCCAAGCTGTTCTTCAG : GGATCGTTAAGAAGAAAGAGAAATGGGGTTGACATTCACCAAGCTTTTCAGCCGGCTATTTGCCAAGAAGGAAATGCGCATCCTCATGGTTGGACTCGATGCAGCTGGTAAGACCACCAT : ATGAACCTATTG : GTTTCAATGTGGAAACTGTTGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAAGACAAG : ATCCGTCCATTGTGGAGGCACTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGACAGAGACCGTGTAGGGGAGGCAAGAGATGAATTGCACAGGATGTTGAATGAG : GATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTC : AAATTCAAAAAATCGACTAAATTGATTTGGTTTT</gDNA_template>
            <first_frame> L  V  L  S  L  T  R  S  L  F  A  Q  A  V  L  Q  :  G  S  L  R  R  K  R  N  G  V  D  I  H  Q  A  F  Q  P  A  I  C  Q  E  G  N  A  H  P  H  G  W  T  R  C  S  W  *  D  H  H  :  M  N  L  L  :  V  S  M  W  K  L  L  N  T  R  T  S  A  S  P  F  G  M  S  G  V  K  T  R :   S  V  H  C  G  G  T  I  S  R  T  L  R  V  S  F  L  W  L  I  A  M  T  E  T  V  *  G  R  Q  E  M  N  C  T  G  C  *  M  R :   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F  K  M  H  I  K  Y  H  N  I  K  T  T  V  V  L  K  I  S :   N  S  K  N  R  L  N  *  F  G  F </first_frame>
            <second_frame>  S  C  F  L  S  L  D  P  S  L  P  K  L  F  F  R :   D  R  *  E  E  R  E  M  G  L  T  F  T  K  L  F  S  R  L  F  A  K  K  E  M  R  I  L  M  V  G  L  D  A  A  G  K  T  T  I :   *  T  Y  W :   F  Q  C  G  N  C  *  I  Q  E  H  Q  L  H  R  L  G  C  R  G  S  R  Q   : D  P  S  I  V  E  A  L  F  P  E  H  S  G  S  H  F  C  G  *  *  Q  *  Q  R  P  C  R  G  G  K  R  *  I  A  Q  D  V  E  *   : G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N  L  K  C  I  S  N  T  I  I  *  K  L  L  W  Y  *  K  F   : Q  I  Q  K  I  D  *  I  D  L  V   </second_frame>
            <third_frame>   R  A  F  S  H  *  I  P  L  C  P  S  C  S  S   : G  I  V  K  K  K  E  K  W  G  *  H  S  P  S  F  S  A  G  Y  L  P  R  R  K  C  A  S  S  W  L  D  S  M  Q  L  V  R  P  P   : Y  E  P  I   : G  F  N  V  E  T  V  E  Y  K  N  I  S  F  T  V  W  D  V  G  G  Q  D  K  :  I  R  P  L  W  R  H  Y  F  Q  N  T  Q  G  L  I  F  V  V  D  S  N  D  R  D  R  V  G  E  A  R  D  E  L  H  R  M  L  N  E  :  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  *  N  A  Y  Q  I  P  *  Y  K  N  Y  C  G  I  K  N  F  :  K  F  K  K  S  T  K  L  I  W  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111620" stop="111533"/>
                    <exon start="111381" stop="111370"/>
                    <exon start="110504" stop="110434"/>
                    <exon start="110276" stop="110157"/>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSPSFSAGYLPRRKCASSWLDSMQLVRPPYEPIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="109065" e_stop="108946"/>
            <exon e_start="108864" e_stop="108783"/>
            <exon e_start="108701" e_stop="108387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109065" e_stop="108946" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108945" i_stop="108865" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108864" e_stop="108783" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="108782" i_stop="108702" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="108701" e_stop="108387" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109065" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109061" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109046" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109038" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109015" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109008" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108975" stop="108946"/>
              <exon start="108864" stop="108783"/>
              <exon start="108701" stop="108415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108844" stop="108783"/>
              <exon start="108701" stop="108490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108829" stop="108783"/>
              <exon start="108701" stop="108485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108813" stop="108783"/>
              <exon start="108701" stop="108478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288998" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108799" stop="108783"/>
              <exon start="108701" stop="108486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATGAGCTTCGGGATGCTGTGTTGCTTGTTTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAAATAACCGACAAGCTTGGACTCCACTCCCTCAGGCAGCGTCACTG : GTACATCCAAAGCACTTGTGCAACTTCTGGAGAGGGACTCTATGAGGGTCTTGATTGGCTTTCTAACAACATCGCCAATAAG : GCCTAAGTCGAAATAGAGTTGTTGCGGATTCATCCTGGATGCAGGCGGGTTTTTATCTAGTTCCATTTACTTTTATTTCGTCTTTTTTCTTTCAGACATTCTCTGAATCTGTGTGGTTATGGCATTTGCTTCTTAGGAGGTCACTTTTGAAACGTTTTTGTAATACAATGGTTGAATGTATGTAATTTGCTGATTAAACTTTATTAACTTGTAACAAATACTAGCTCTTTTCTGGTTATTTTGCAGTCAATTTAAAATGCATATCAAATACCATAATATAAAAACTACTGTGGTATTAAAAATTTCATTTCAACT</gDNA_template>
            <first_frame> G  *  A  S  G  C  C  V  A  C  F  C  *  Q  T  R  S  S  *  C  N  E  C  C  *  N  N  R  Q  A  W  T  P  L  P  Q  A  A  S  L  :  V  H  P  K  H  L  C  N  F  W  R  G  T  L  *  G  S  *  L  A  F  *  Q  H  R  Q  *   : G  L  S  R  N  R  V  V  A  D  S  S  W  M  Q  A  G  F  Y  L  V  P  F  T  F  I  S  S  F  F  F  Q  T  F  S  E  S  V  W  L  W  H  L  L  L  R  R  S  L  L  K  R  F  C  N  T  M  V  E  C  M  *  F  A  D  *  T  L  L  T  C  N  K  Y  *  L  F  S  G  Y  F  A  V  N  L  K  C  I  S  N  T  I  I  *  K  L  L  W  Y  *  K  F  H  F  N  </first_frame>
            <second_frame>  D  E  L  R  D  A  V  L  L  V  F  A  N  K  Q  D  L  P  N  A  M  N  A  A  E  I  T  D  K  L  G  L  H  S  L  R  Q  R  H  W :   Y  I  Q  S  T  C  A  T  S  G  E  G  L  Y  E  G  L  D  W  L  S  N  N  I  A  N  K  :  A  *  V  E  I  E  L  L  R  I  H  P  G  C  R  R  V  F  I  *  F  H  L  L  L  F  R  L  F  S  F  R  H  S  L  N  L  C  G  Y  G  I  C  F  L  G  G  H  F  *  N  V  F  V  I  Q  W  L  N  V  C  N  L  L  I  K  L  Y  *  L  V  T  N  T  S  S  F  L  V  I  L  Q  S  I  *  N  A  Y  Q  I  P  *  Y  K  N  Y  C  G  I  K  N  F  I  S  T </second_frame>
            <third_frame>   M  S  F  G  M  L  C  C  L  F  L  L  T  N  K  I  F  L  M  Q  *  M  L  L  K  *  P  T  S  L  D  S  T  P  S  G  S  V  T   : G  T  S  K  A  L  V  Q  L  L  E  R  D  S  M  R  V  L  I  G  F  L  T  T  S  P  I  R :   P  K  S  K  *  S  C  C  G  F  I  L  D  A  G  G  F  L  S  S  S  I  Y  F  Y  F  V  F  F  L  S  D  I  L  *  I  C  V  V  M  A  F  A  S  *  E  V  T  F  E  T  F  L  *  Y  N  G  *  M  Y  V  I  C  *  L  N  F  I  N  L  *  Q  I  L  A  L  F  W  L  F  C  S  Q  F  K  M  H  I  K  Y  H  N  I  K  T  T  V  V  L  K  I  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109064" stop="108946"/>
                    <exon start="108864" stop="108783"/>
                    <exon start="108701" stop="108696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="111384" e_stop="110762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111384" e_stop="110762" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111384" stop="110762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111383" stop="110782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATGAACCTATTGCTTCTTAAAACAGAAAAAAAAGAAAATGGGGATAGGGGAAGTGGAAAAGGGGGGAGGGGGTTACAAGGTGGGGAATCAACCCTTGCCAGTCACCAACAATGTGAAAGTTTAGGTACCTAACCAACTGAGCTACTCAGTTGCCCAAAAGAAAGACTAACCTATCTTCTTATCAAAAAAAAAAAAAGAGACTTAACCTATCATTTTGATAAGGAGACAGAAAAGGTGCATAGAACTAGTACTATAACTGTCCCTCTACTTTTACTGTTTGCTGCAATTGATTAGTTTGTTATAACTTAGTCATCCTTCGTTGTCTCAGTTCTTTCTGTCAATCCAGGGAAAGCAATGTTTAATCAGGGGCATGCGGTCCTTAATCAAAATAATTATTTTGAACTTTTAAATATGTTATCTTTGATGCAAATGTAAAGGCTCCTAAAAAGAAGCTTAGATTATCAGTGTTGTAGAAATACCTGTGTTTGAGACAGCTATGTCCTTTTGGATCACTCATGAATATCATTTTTAAGAATATTGACTAAGACTACATTTTCTGGTGAAATAACACAAACACAAATCCCCCCCCCCCCCACCTTTTGCACAGGTAAGAGTGAAAC</gDNA_template>
            <first_frame> K  M  N  L  L  L  L  K  T  E  K  K  E  N  G  D  R  G  S  G  K  G  G  R  G  L  Q  G  G  E  S  T  L  A  S  H  Q  Q  C  E  S  L  G  T  *  P  T  E  L  L  S  C  P  K  E  R  L  T  Y  L  L  I  K  K  K  K  R  D  L  T  Y  H  F  D  K  E  T  E  K  V  H  R  T  S  T  I  T  V  P  L  L  L  L  F  A  A  I  D  *  F  V  I  T  *  S  S  F  V  V  S  V  L  S  V  N  P  G  K  A  M  F  N  Q  G  H  A  V  L  N  Q  N  N  Y  F  E  L  L  N  M  L  S  L  M  Q  M  *  R  L  L  K  R  S  L  D  Y  Q  C  C  R  N  T  C  V  *  D  S  Y  V  L  L  D  H  S  *  I  S  F  L  R  I  L  T  K  T  T  F  S  G  E  I  T  Q  T  Q  I  P  P  P  P  T  F  C  T  G  K  S  E   </first_frame>
            <second_frame>  R  *  T  Y  C  F  L  K  Q  K  K  K  K  M  G  I  G  E  V  E  K  G  G  G  G  Y  K  V  G  N  Q  P  L  P  V  T  N  N  V  K  V  *  V  P  N  Q  L  S  Y  S  V  A  Q  K  K  D  *  P  I  F  L  S  K  K  K  K  E  T  *  P  I  I  L  I  R  R  Q  K  R  C  I  E  L  V  L  *  L  S  L  Y  F  Y  C  L  L  Q  L  I  S  L  L  *  L  S  H  P  S  L  S  Q  F  F  L  S  I  Q  G  K  Q  C  L  I  R  G  M  R  S  L  I  K  I  I  I  L  N  F  *  I  C  Y  L  *  C  K  C  K  G  S  *  K  E  A  *  I  I  S  V  V  E  I  P  V  F  E  T  A  M  S  F  W  I  T  H  E  Y  H  F  *  E  Y  *  L  R  L  H  F  L  V  K  *  H  K  H  K  S  P  P  P  P  P  F  A  Q  V  R  V  K  </second_frame>
            <third_frame>   D  E  P  I  A  S  *  N  R  K  K  R  K  W  G  *  G  K  W  K  R  G  E  G  V  T  R  W  G  I  N  P  C  Q  S  P  T  M  *  K  F  R  Y  L  T  N  *  A  T  Q  L  P  K  R  K  T  N  L  S  S  Y  Q  K  K  K  K  R  L  N  L  S  F  *  *  G  D  R  K  G  A  *  N  *  Y  Y  N  C  P  S  T  F  T  V  C  C  N  *  L  V  C  Y  N  L  V  I  L  R  C  L  S  S  F  C  Q  S  R  E  S  N  V  *  S  G  A  C  G  P  *  S  K  *  L  F  *  T  F  K  Y  V  I  F  D  A  N  V  K  A  P  K  K  K  L  R  L  S  V  L  *  K  Y  L  C  L  R  Q  L  C  P  F  G  S  L  M  N  I  I  F  K  N  I  D  *  D  Y  I  F  W  *  N  N  T  N  T  N  P  P  P  P  H  L  L  H  R  *  E  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0069E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="114951" PGL_stop="113893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114951" e_stop="114856"/>
            <exon e_start="114772" e_stop="114622"/>
            <exon e_start="114536" e_stop="113893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.471" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114951" e_stop="114856" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="114855" i_stop="114773" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114772" e_stop="114622" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.471" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114621" i_stop="114537" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="114536" e_stop="113893" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114951" stop="114856"/>
              <exon start="114772" stop="114622"/>
              <exon start="114536" stop="114173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114926" stop="114856"/>
              <exon start="114772" stop="114622"/>
              <exon start="114536" stop="114158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114677" stop="114622"/>
              <exon start="114536" stop="113893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114677" stop="114622"/>
              <exon start="114536" stop="113902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114676" stop="114622"/>
              <exon start="114536" stop="113893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACTCAAAGCTCCGTGCAAAGATTGCTGATTTTGGGTTGGCCAGGTCATTCCAAGAAGACAAAAGTCACATAAGCACTGCCATTGCTGGCACATT : AGGATATATGGCTCCAGAATACTTGGCACATGGTCAATTGACAGAAAAAGCAGATGTTTACAGCTTTGGAGTTCTTCTAATGGAAATTGTTACTGGAAGGCAAAATAACAGGAGCATAAATGATGAAAATACAGAAAGCTTAGTTTCCATT : GTGTGGGATTACTATCAACGCGGTATAGTGGAGGAACTATTCGATCCGAGTCTCATGTTGCACAACTACAACACCATCAATGTGAAAAATGAGATCGCGAGAGTTTTACATGTGGGGCTTTTGTGCACTCAAGAGATCCAAACAGTACGTCCATCCATGTCTAAGGCATTACGGATGATCCTCGAGAAAGAAGAAGAGCTGCCGGCACCTACTAATCCACCATTTGTTGACGAGAACACCATGGAACTTCATGGTCCTTGGGAGAAGTATTCGCTTAGTCAAGGTGATTCTAGTTCAATTGCCAACTTATCTCATAGTTCATTTTACCCCAGATGATGATATTTCAAAGCCCTGAAACTGATGCTAACGATTATAAGCATCATTTCGCCTCGTGCTCTTGACGATCATAGTAATCGAGCAGTTAGTTATAACAACAATTGTGTATCAGTTCCAAACAAAAGTTGGGGTCGGCTATCTGAATTCTCGATTCTACTTAAGCTTTGTTAGCACAGGAGTATGATTGTATAGGATCTCCTTCATTGGAAAAGGATTGTAACGTAGTATGTATAAATAGGGCTCAGTGTAATAACATAGTTTATTTGTCTTAATGATATTCTTTGAGTGTTTATATTTCTATATGGTAT</gDNA_template>
            <first_frame> G  L  K  A  P  C  K  D  C  *  F  W  V  G  Q  V  I  P  R  R  Q  K  S  H  K  H  C  H  C  W  H  I  :  R  I  Y  G  S  R  I  L  G  T  W  S  I  D  R  K  S  R  C  L  Q  L  W  S  S  S  N  G  N  C  Y  W  K  A  K  *  Q  E  H  K  *  *  K  Y  R  K  L  S  F  H   : C  V  G  L  L  S  T  R  Y  S  G  G  T  I  R  S  E  S  H  V  A  Q  L  Q  H  H  Q  C  E  K  *  D  R  E  S  F  T  C  G  A  F  V  H  S  R  D  P  N  S  T  S  I  H  V  *  G  I  T  D  D  P  R  E  R  R  R  A  A  G  T  Y  *  S  T  I  C  *  R  E  H  H  G  T  S  W  S  L  G  E  V  F  A  *  S  R  *  F  *  F  N  C  Q  L  I  S  *  F  I  L  P  Q  M  M  I  F  Q  S  P  E  T  D  A  N  D  Y  K  H  H  F  A  S  C  S  *  R  S  *  *  S  S  S  *  L  *  Q  Q  L  C  I  S  S  K  Q  K  L  G  S  A  I  *  I  L  D  S  T  *  A  L  L  A  Q  E  Y  D  C  I  G  S  P  S  L  E  K  D  C  N  V  V  C  I  N  R  A  Q  C  N  N  I  V  Y  L  S  *  *  Y  S  L  S  V  Y  I  S  I  W  Y </first_frame>
            <second_frame>  D  S  K  L  R  A  K  I  A  D  F  G  L  A  R  S  F  Q  E  D  K  S  H  I  S  T  A  I  A  G  T  L :   G  Y  M  A  P  E  Y  L  A  H  G  Q  L  T  E  K  A  D  V  Y  S  F  G  V  L  L  M  E  I  V  T  G  R  Q  N  N  R  S  I  N  D  E  N  T  E  S  L  V  S  I  :  V  W  D  Y  Y  Q  R  G  I  V  E  E  L  F  D  P  S  L  M  L  H  N  Y  N  T  I  N  V  K  N  E  I  A  R  V  L  H  V  G  L  L  C  T  Q  E  I  Q  T  V  R  P  S  M  S  K  A  L  R  M  I  L  E  K  E  E  E  L  P  A  P  T  N  P  P  F  V  D  E  N  T  M  E  L  H  G  P  W  E  K  Y  S  L  S  Q  G  D  S  S  S  I  A  N  L  S  H  S  S  F  Y  P  R  *  *  Y  F  K  A  L  K  L  M  L  T  I  I  S  I  I  S  P  R  A  L  D  D  H  S  N  R  A  V  S  Y  N  N  N  C  V  S  V  P  N  K  S  W  G  R  L  S  E  F  S  I  L  L  K  L  C  *  H  R  S  M  I  V  *  D  L  L  H  W  K  R  I  V  T  *  Y  V  *  I  G  L  S  V  I  T  *  F  I  C  L  N  D  I  L  *  V  F  I  F  L  Y  G   </second_frame>
            <third_frame>   T  Q  S  S  V  Q  R  L  L  I  L  G  W  P  G  H  S  K  K  T  K  V  T  *  A  L  P  L  L  A  H   : *  D  I  W  L  Q  N  T  W  H  M  V  N  *  Q  K  K  Q  M  F  T  A  L  E  F  F  *  W  K  L  L  L  E  G  K  I  T  G  A  *  M  M  K  I  Q  K  A  *  F  P  L :   C  G  I  T  I  N  A  V  *  W  R  N  Y  S  I  R  V  S  C  C  T  T  T  T  P  S  M  *  K  M  R  S  R  E  F  Y  M  W  G  F  C  A  L  K  R  S  K  Q  Y  V  H  P  C  L  R  H  Y  G  *  S  S  R  K  K  K  S  C  R  H  L  L  I  H  H  L  L  T  R  T  P  W  N  F  M  V  L  G  R  S  I  R  L  V  K  V  I  L  V  Q  L  P  T  Y  L  I  V  H  F  T  P  D  D  D  I  S  K  P  *  N  *  C  *  R  L  *  A  S  F  R  L  V  L  L  T  I  I  V  I  E  Q  L  V  I  T  T  I  V  Y  Q  F  Q  T  K  V  G  V  G  Y  L  N  S  R  F  Y  L  S  F  V  S  T  G  V  *  L  Y  R  I  S  F  I  G  K  G  L  *  R  S  M  Y  K  *  G  S  V  *  *  H  S  L  F  V  L  M  I  F  F  E  C  L  Y  F  Y  M  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114950" stop="114856"/>
                    <exon start="114772" stop="114622"/>
                    <exon start="114536" stop="114201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLMEIVTGRQNNRSINDENTESLVSIVWDYYQRGIVEELFDPSLMLHNYNTINVKNEIARVLHVGLLCTQEIQTVRPSMSKALRMILEKEEELPAPTNPPFVDENTMELHGPWEKYSLSQGDSSSIANLSHSSFYPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="148095" PGL_stop="149496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148095" e_stop="148467"/>
            <exon e_start="148945" e_stop="149076"/>
            <exon e_start="149202" e_stop="149496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="0.660" acc_prob="0.886" e_score="0.992"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="148095" e_stop="148467" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="148468" i_stop="148944" i_length="477"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="148945" e_stop="149076" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.660" acc_prob="0.886">
            <gDNA_intron_boundary i_start="149077" i_stop="149201" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="149202" e_stop="149496" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148095" stop="148467"/>
              <exon start="148945" stop="149023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148370" stop="148467"/>
              <exon start="148945" stop="149076"/>
              <exon start="149202" stop="149496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATGAGTGGCTCGACATTCCTTGGATGAAGGACTATTACAACTTTGGGTTTGATCACTTCAGTATGACCTGGAGGAAAGTTGGTATCCGGGGTCTTCTTGATTACCTTTTAGGGAATGCTGGTCCATTTGCTTCAGGGGACTGGATACTTCCTGATCTTACCATCCAGGGGTCAATCAAGTTGAACAGACACTTGCATACATTTCCGCAAACATACTACTTCAGCTATGCTACCAAGCATCCCACAAAAGTTATGGGTTTTGCAGTTCCTTCTGGCATTCGAGGGATACATCCTCTGCTATTCATTAGAGTCCTGCAAATGAGCCAATGGCGGCATCCTCAACATGTTTCTCCTCCGTATAAGGGCTATAG : GGATGAAGATTGGTGGGACAATGACGGTGCTCTCAACACCATATCTATGACACATCCTCGTTTGCCGGTTGAACACCCTAGTTGCCTTGTAATTAAAGATTCTGATTGCCAGCCGTTGCAACGTGGCATCTG : GTACTATAAAATTATAGAAGGCGACCACATTTTCTTCGTCGTGAATCGTGAAAGAGCTGGAGTTCAATTCGATTTGATCTACAACAGCATATTCGAGCGCTGCAGGAAACATGTCTTAAGAAAGACAACAGCACTGCCAAACCAAGTAACTCCTGAATAGTCAGTAAGATACTTTTCTCATTTGTTTATGAAATACTGTATTATCACATTCTTTGTAGTTCTTTTACACGCTGTCGAAAATCTATTTCGTAAAACGAAATAAGATTTTACGGTCAATGTCTCTCACACTGTTCTT</gDNA_template>
            <first_frame> F  M  S  G  S  T  F  L  G  *  R  T  I  T  T  L  G  L  I  T  S  V  *  P  G  G  K  L  V  S  G  V  F  L  I  T  F  *  G  M  L  V  H  L  L  Q  G  T  G  Y  F  L  I  L  P  S  R  G  Q  S  S  *  T  D  T  C  I  H  F  R  K  H  T  T  S  A  M  L  P  S  I  P  Q  K  L  W  V  L  Q  F  L  L  A  F  E  G  Y  I  L  C  Y  S  L  E  S  C  K  *  A  N  G  G  I  L  N  M  F  L  L  R  I  R  A  I   : G  M  K  I  G  G  T  M  T  V  L  S  T  P  Y  L  *  H  I  L  V  C  R  L  N  T  L  V  A  L  *  L  K  I  L  I  A  S  R  C  N  V  A  S   : G  T  I  K  L  *  K  A  T  T  F  S  S  S  *  I  V  K  E  L  E  F  N  S  I  *  S  T  T  A  Y  S  S  A  A  G  N  M  S  *  E  R  Q  Q  H  C  Q  T  K  *  L  L  N  S  Q  *  D  T  F  L  I  C  L  *  N  T  V  L  S  H  S  L  *  F  F  Y  T  L  S  K  I  Y  F  V  K  R  N  K  I  L  R  S  M  S  L  T  L  F   </first_frame>
            <second_frame>  L  *  V  A  R  H  S  L  D  E  G  L  L  Q  L  W  V  *  S  L  Q  Y  D  L  E  E  S  W  Y  P  G  S  S  *  L  P  F  R  E  C  W  S  I  C  F  R  G  L  D  T  S  *  S  Y  H  P  G  V  N  Q  V  E  Q  T  L  A  Y  I  S  A  N  I  L  L  Q  L  C  Y  Q  A  S  H  K  S  Y  G  F  C  S  S  F  W  H  S  R  D  T  S  S  A  I  H  *  S  P  A  N  E  P  M  A  A  S  S  T  C  F  S  S  V  *  G  L  *  :  G  *  R  L  V  G  Q  *  R  C  S  Q  H  H  I  Y  D  T  S  S  F  A  G  *  T  P  *  L  P  C  N  *  R  F  *  L  P  A  V  A  T  W  H  L  :  V  L  *  N  Y  R  R  R  P  H  F  L  R  R  E  S  *  K  S  W  S  S  I  R  F  D  L  Q  Q  H  I  R  A  L  Q  E  T  C  L  K  K  D  N  S  T  A  K  P  S  N  S  *  I  V  S  K  I  L  F  S  F  V  Y  E  I  L  Y  Y  H  I  L  C  S  S  F  T  R  C  R  K  S  I  S  *  N  E  I  R  F  Y  G  Q  C  L  S  H  C  S  </second_frame>
            <third_frame>   Y  E  W  L  D  I  P  W  M  K  D  Y  Y  N  F  G  F  D  H  F  S  M  T  W  R  K  V  G  I  R  G  L  L  D  Y  L  L  G  N  A  G  P  F  A  S  G  D  W  I  L  P  D  L  T  I  Q  G  S  I  K  L  N  R  H  L  H  T  F  P  Q  T  Y  Y  F  S  Y  A  T  K  H  P  T  K  V  M  G  F  A  V  P  S  G  I  R  G  I  H  P  L  L  F  I  R  V  L  Q  M  S  Q  W  R  H  P  Q  H  V  S  P  P  Y  K  G  Y  R :   D  E  D  W  W  D  N  D  G  A  L  N  T  I  S  M  T  H  P  R  L  P  V  E  H  P  S  C  L  V  I  K  D  S  D  C  Q  P  L  Q  R  G  I  W :   Y  Y  K  I  I  E  G  D  H  I  F  F  V  V  N  R  E  R  A  G  V  Q  F  D  L  I  Y  N  S  I  F  E  R  C  R  K  H  V  L  R  K  T  T  A  L  P  N  Q  V  T  P  E  *  S  V  R  Y  F  S  H  L  F  M  K  Y  C  I  I  T  F  F  V  V  L  L  H  A  V  E  N  L  F  R  K  T  K  *  D  F  T  V  N  V  S  H  T  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="148097" stop="148467"/>
                    <exon start="148945" stop="149076"/>
                    <exon start="149202" stop="149361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YEWLDIPWMKDYYNFGFDHFSMTWRKVGIRGLLDYLLGNAGPFASGDWILPDLTIQGSIKLNRHLHTFPQTYYFSYATKHPTKVMGFAVPSGIRGIHPLLFIRVLQMSQWRHPQHVSPPYKGYRDEDWWDNDGALNTISMTHPRLPVEHPSCLVIKDSDCQPLQRGIWYYKIIEGDHIFFVVNRERAGVQFDLIYNSIFERCRKHVLRKTTALPNQVTPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="150465" PGL_stop="152782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150465" e_stop="151014"/>
            <exon e_start="151846" e_stop="152782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.958"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="150465" e_stop="151014" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="151015" i_stop="151845" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="151846" e_stop="152782" e_length="937"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150465" stop="151014"/>
              <exon start="151846" stop="151877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150465" stop="150726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150479" stop="151014"/>
              <exon start="151846" stop="151908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150502" stop="150965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150532" stop="151014"/>
              <exon start="151846" stop="152005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150536" stop="151014"/>
              <exon start="151846" stop="151926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150611" stop="151014"/>
              <exon start="151846" stop="152134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150611" stop="151011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150614" stop="151001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150651" stop="151014"/>
              <exon start="151846" stop="152052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150715" stop="151014"/>
              <exon start="151846" stop="151885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152092" stop="152554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152099" stop="152782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGGGATTTTTGCAGCTATTTTACTAGTTTGCGCGATTCTATCACCTCTGCTAGCCTCATCATTTCCAAATCATCGTCCTGAATTTCTAGAACATGATTCTGGTAAGACAGACGTAACGATCCATGGTGATAATAACAATGTTGTTCATGCCAATGTCAATGACATCGCGATTCCTTGCTCAAATTATGAGACAAGGAACGAAAGGTCCTTGAAGGAAAAGAAGAAGAAGAAGAACAAGAACAAGAAGAACAAAAAAGAAATGAACCATCACGAACACGATTTTGAGGCTTTCAATTTTGAGCATCCCCAAATAGAAGGTGTCCGCCATGGATATCCACAAGTTTTTCCTGAACATAACGTAGATCCGATTACTAAAGAACACGAAGAACCAGAGATTTTAGAAGGATTGAGAGAGGGTTTTTATCAAAATACATGTCCTCAAGCAGAGGAAATCATCAGAAATGGCCTAATTAGAGCCTTTCAAAATGACTCTACTATTGCTGCTGCCATCCCTAGGCTTTTCTTACATGATTGCTTTGTCAAA : GGTTGCGATGGATCAATATTGCTCGATACAACACCAACCGGTGGGAAAATAGAGAAGTTATCACCGTCAAATGGTATTACAGTCAAGGGATTTGAACTCATTGACGAGATCAAAGCAGAACTCGAAGAGAACTGCCCAGGCATTGTCTCGTGCTCTGATGTTTTAGCCTATTTATCTCGTGACGCCTTTGTTGCATCGGGACTCCCCCATTACGAGGTGTCTGGTGGCAGACGTGACGGCATGGAATCGCGCGTAGAAAACGTCGTTGGCAACCTCCCATTGCCTGATGACACAGTAGACCAAATGATTCAACTTTTCAACAGAAAAGGCCTAAATGCAGAAGATTTAGTTGTCTTAATTGGTGCACACTCCATTGGAGTAGCTCATTGTTTCAACTTTCTTTATCGAATGGACACACCCGAGAAGGCACAAATGGTTGATCCGCGACTTGGGAATGTTATGAAATTTACATGTACTGGACAAATGAGTACAATAGCGTTCGACGCAACAACACAATACAAAATGGACTCAGTATTTTACAAGCAATTGTTGATGAAAAAAGGTTTACTCGAATCCGATCAAGCTTTGACACAAGATATAAGAACAAGGGGACTTGTCCAAAGATTTAGCAATGATGAAGTGGGGTGGTTTAACAAATTCGGCGTGGCCATGAACAAGCTTGGGGCGGTAGAGGTGCTCACCGGAAACCAAGGGCAAATCAGGAAACAATGTCGAGCTGTTAACTTATAATAAGAGTTTAACTTGTATACACTGACTGATTCTGATTTGACAATGCTCTAAATATGTATCACAATTTGGATGATTAATTTTTTTTCACCATCGGTGAAAGAAGATGTAATTTGCTCATTCAAAACATCATCATGGACCTACTCAAACAAGAAATGAAGAATTCTTTTTTTCACTTGAGAATTTTTTT</gDNA_template>
            <first_frame> *  G  W  D  F  C  S  Y  F  T  S  L  R  D  S  I  T  S  A  S  L  I  I  S  K  S  S  S  *  I  S  R  T  *  F  W  *  D  R  R  N  D  P  W  *  *  *  Q  C  C  S  C  Q  C  Q  *  H  R  D  S  L  L  K  L  *  D  K  E  R  K  V  L  E  G  K  E  E  E  E  E  Q  E  Q  E  E  Q  K  R  N  E  P  S  R  T  R  F  *  G  F  Q  F  *  A  S  P  N  R  R  C  P  P  W  I  S  T  S  F  S  *  T  *  R  R  S  D  Y  *  R  T  R  R  T  R  D  F  R  R  I  E  R  G  F  L  S  K  Y  M  S  S  S  R  G  N  H  Q  K  W  P  N  *  S  L  S  K  *  L  Y  Y  C  C  C  H  P  *  A  F  L  T  *  L  L  C  Q   : R  L  R  W  I  N  I  A  R  Y  N  T  N  R  W  E  N  R  E  V  I  T  V  K  W  Y  Y  S  Q  G  I  *  T  H  *  R  D  Q  S  R  T  R  R  E  L  P  R  H  C  L  V  L  *  C  F  S  L  F  I  S  *  R  L  C  C  I  G  T  P  P  L  R  G  V  W  W  Q  T  *  R  H  G  I  A  R  R  K  R  R  W  Q  P  P  I  A  *  *  H  S  R  P  N  D  S  T  F  Q  Q  K  R  P  K  C  R  R  F  S  C  L  N  W  C  T  L  H  W  S  S  S  L  F  Q  L  S  L  S  N  G  H  T  R  E  G  T  N  G  *  S  A  T  W  E  C  Y  E  I  Y  M  Y  W  T  N  E  Y  N  S  V  R  R  N  N  T  I  Q  N  G  L  S  I  L  Q  A  I  V  D  E  K  R  F  T  R  I  R  S  S  F  D  T  R  Y  K  N  K  G  T  C  P  K  I  *  Q  *  *  S  G  V  V  *  Q  I  R  R  G  H  E  Q  A  W  G  G  R  G  A  H  R  K  P  R  A  N  Q  E  T  M  S  S  C  *  L  I  I  R  V  *  L  V  Y  T  D  *  F  *  F  D  N  A  L  N  M  Y  H  N  L  D  D  *  F  F  F  T  I  G  E  R  R  C  N  L  L  I  Q  N  I  I  M  D  L  L  K  Q  E  M  K  N  S  F  F  H  L  R  I  F   </first_frame>
            <second_frame>  K  V  G  I  F  A  A  I  L  L  V  C  A  I  L  S  P  L  L  A  S  S  F  P  N  H  R  P  E  F  L  E  H  D  S  G  K  T  D  V  T  I  H  G  D  N  N  N  V  V  H  A  N  V  N  D  I  A  I  P  C  S  N  Y  E  T  R  N  E  R  S  L  K  E  K  K  K  K  K  N  K  N  K  K  N  K  K  E  M  N  H  H  E  H  D  F  E  A  F  N  F  E  H  P  Q  I  E  G  V  R  H  G  Y  P  Q  V  F  P  E  H  N  V  D  P  I  T  K  E  H  E  E  P  E  I  L  E  G  L  R  E  G  F  Y  Q  N  T  C  P  Q  A  E  E  I  I  R  N  G  L  I  R  A  F  Q  N  D  S  T  I  A  A  A  I  P  R  L  F  L  H  D  C  F  V  K  :  G  C  D  G  S  I  L  L  D  T  T  P  T  G  G  K  I  E  K  L  S  P  S  N  G  I  T  V  K  G  F  E  L  I  D  E  I  K  A  E  L  E  E  N  C  P  G  I  V  S  C  S  D  V  L  A  Y  L  S  R  D  A  F  V  A  S  G  L  P  H  Y  E  V  S  G  G  R  R  D  G  M  E  S  R  V  E  N  V  V  G  N  L  P  L  P  D  D  T  V  D  Q  M  I  Q  L  F  N  R  K  G  L  N  A  E  D  L  V  V  L  I  G  A  H  S  I  G  V  A  H  C  F  N  F  L  Y  R  M  D  T  P  E  K  A  Q  M  V  D  P  R  L  G  N  V  M  K  F  T  C  T  G  Q  M  S  T  I  A  F  D  A  T  T  Q  Y  K  M  D  S  V  F  Y  K  Q  L  L  M  K  K  G  L  L  E  S  D  Q  A  L  T  Q  D  I  R  T  R  G  L  V  Q  R  F  S  N  D  E  V  G  W  F  N  K  F  G  V  A  M  N  K  L  G  A  V  E  V  L  T  G  N  Q  G  Q  I  R  K  Q  C  R  A  V  N  L  *  *  E  F  N  L  Y  T  L  T  D  S  D  L  T  M  L  *  I  C  I  T  I  W  M  I  N  F  F  S  P  S  V  K  E  D  V  I  C  S  F  K  T  S  S  W  T  Y  S  N  K  K  *  R  I  L  F  F  T  *  E  F  F  </second_frame>
            <third_frame>   R  L  G  F  L  Q  L  F  Y  *  F  A  R  F  Y  H  L  C  *  P  H  H  F  Q  I  I  V  L  N  F  *  N  M  I  L  V  R  Q  T  *  R  S  M  V  I  I  T  M  L  F  M  P  M  S  M  T  S  R  F  L  A  Q  I  M  R  Q  G  T  K  G  P  *  R  K  R  R  R  R  R  T  R  T  R  R  T  K  K  K  *  T  I  T  N  T  I  L  R  L  S  I  L  S  I  P  K  *  K  V  S  A  M  D  I  H  K  F  F  L  N  I  T  *  I  R  L  L  K  N  T  K  N  Q  R  F  *  K  D  *  E  R  V  F  I  K  I  H  V  L  K  Q  R  K  S  S  E  M  A  *  L  E  P  F  K  M  T  L  L  L  L  L  P  S  L  G  F  S  Y  M  I  A  L  S  K :   V  A  M  D  Q  Y  C  S  I  Q  H  Q  P  V  G  K  *  R  S  Y  H  R  Q  M  V  L  Q  S  R  D  L  N  S  L  T  R  S  K  Q  N  S  K  R  T  A  Q  A  L  S  R  A  L  M  F  *  P  I  Y  L  V  T  P  L  L  H  R  D  S  P  I  T  R  C  L  V  A  D  V  T  A  W  N  R  A  *  K  T  S  L  A  T  S  H  C  L  M  T  Q  *  T  K  *  F  N  F  S  T  E  K  A  *  M  Q  K  I  *  L  S  *  L  V  H  T  P  L  E  *  L  I  V  S  T  F  F  I  E  W  T  H  P  R  R  H  K  W  L  I  R  D  L  G  M  L  *  N  L  H  V  L  D  K  *  V  Q  *  R  S  T  Q  Q  H  N  T  K  W  T  Q  Y  F  T  S  N  C  *  *  K  K  V  Y  S  N  P  I  K  L  *  H  K  I  *  E  Q  G  D  L  S  K  D  L  A  M  M  K  W  G  G  L  T  N  S  A  W  P  *  T  S  L  G  R  *  R  C  S  P  E  T  K  G  K  S  G  N  N  V  E  L  L  T  Y  N  K  S  L  T  C  I  H  *  L  I  L  I  *  Q  C  S  K  Y  V  S  Q  F  G  *  L  I  F  F  H  H  R  *  K  K  M  *  F  A  H  S  K  H  H  H  G  P  T  Q  T  R  N  E  E  F  F  F  S  L  E  N  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0069E17.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150466" stop="151014"/>
                    <exon start="151846" stop="152595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGIFAAILLVCAILSPLLASSFPNHRPEFLEHDSGKTDVTIHGDNNNVVHANVNDIAIPCSNYETRNERSLKEKKKKKNKNKKNKKEMNHHEHDFEAFNFEHPQIEGVRHGYPQVFPEHNVDPITKEHEEPEILEGLREGFYQNTCPQAEEIIRNGLIRAFQNDSTIAAAIPRLFLHDCFVKGCDGSILLDTTPTGGKIEKLSPSNGITVKGFELIDEIKAELEENCPGIVSCSDVLAYLSRDAFVASGLPHYEVSGGRRDGMESRVENVVGNLPLPDDTVDQMIQLFNRKGLNAEDLVVLIGAHSIGVAHCFNFLYRMDTPEKAQMVDPRLGNVMKFTCTGQMSTIAFDATTQYKMDSVFYKQLLMKKGLLESDQALTQDIRTRGLVQRFSNDEVGWFNKFGVAMNKLGAVEVLTGNQGQIRKQCRAVNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 526 chains have been computed
$ 
$ memory statistics:
$ 3738352 bytes spliced alignments in total
$ 338 spliced alignments have been stored
$ 11060 bytes was the average size of a spliced alignment
$ 40184 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1913 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 564 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:48:08
-->
