<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:29:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546391" ref_strand="+" ref_description="SGN-E546391 [TUS-69-L18](-)">
      <seq>taatgataggattgatgtagctcttgctagtgatgctgatggtgttcatattggacagtctgacatgcctgctcatgttgcacgggctcttcttgggcctgacaaaatcattggtgtatcatgcaaaacaccggagcacgctcagcaagcatggatagatggggctgattacatcggctctggtggtgtatatcctaccaataccaaagagaacaataaaacaattggtttggatggtctaaaaactgtttgtgtgtcttccaaattaccagttgtagccattggcggcatagccatgtctaatgcgcaggctgtaatgcaactaggggtcccaaacctgaaaggcgttgctgttgtatctgctctgtttgatagggaatgtgttatgactgagaccagaaagttacttgaagtgctcaaggagtctaccaaaatagcaaaatgaagaaatgctggagatcacttacaggcaatgctaccccgatttttgttactaaaatatttcttgatcaaatttttggaagtgaactttgcgtctagagaagttaatgcaggcaccggaatgttgatatccttttgtcagtgctgtgctagagaggtttatgatatttcatttatcttctacagtttactgtacgtattcattgccaaggttgatgttttacttttcttttcaagatatttttgaagtcatatgcctctcatagatttctgatctttgttatattttcctcgccatttataaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="2924" stop="1565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2624" g_stop="1873" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="766"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E546391" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2624" e_stop="1873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATAGGATTGATGTAGCTCTTGCTAGTGATGCTGATGGTGTTCATATTGGACAGTCTGACATGCCTGCTCATGTTGCGCGGGCTCTTCTTGGGCCTGACAAAATCATTGGTGTATCATGCAAAACACCGGAGCACGCTCAGCAAGCATGGATAGATGGGGCTGATTACATCGGCTCTGGTGGTGTATATCCTACCAATACCAAAGAGAACAATAAAACAATTGGTTTGGATGGTCTAAAAACTGTTTGTGTGTCTTCCAAATTACCAGTTGTAGCCATTGGCGGCATAGGCATGTCTAATGCGCAGGCTGTAATGCAACTAGGGGTCCCAAACCTGAAAGGCGTTGCTGTTGTATCTGCTCTGTTTGATAGGGAATGTGTTATGACTGAGACCAGAAAGTTACTTGAAGTGCTCAAGGAGTCTACCAAAATAGCAAAATGAAGAAATGCTGGTGATCACCATACATTCTCTTACAGGCAATGCTACCCCGATTTTTGTTACTAAAATATTTCTTGATCAAATTTTTGGAAGTGAACTTTG-GTCTAGAGAAGTTAATACAGGCACCGGAATGTTGATATCCTTTTGTCAATGCTGTGCTAGAGAGGTTTATGATATTTCACTTATCTTCTACAGTTTACTGTACGTATTCATTGCCAAGGTTGATGTTTTACTTTTCTTTTCAAGATATTTTTGAAGTCATATGCCTCTCATAGATTTCTGACCTTTGTTATATTATTCCTCGCCATTT</genome_strand>
        <mrna_strand>TAATGATAGGATTGATGTAGCTCTTGCTAGTGATGCTGATGGTGTTCATATTGGACAGTCTGACATGCCTGCTCATGTTGCACGGGCTCTTCTTGGGCCTGACAAAATCATTGGTGTATCATGCAAAACACCGGAGCACGCTCAGCAAGCATGGATAGATGGGGCTGATTACATCGGCTCTGGTGGTGTATATCCTACCAATACCAAAGAGAACAATAAAACAATTGGTTTGGATGGTCTAAAAACTGTTTGTGTGTCTTCCAAATTACCAGTTGTAGCCATTGGCGGCATAGCCATGTCTAATGCGCAGGCTGTAATGCAACTAGGGGTCCCAAACCTGAAAGGCGTTGCTGTTGTATCTGCTCTGTTTGATAGGGAATGTGTTATGACTGAGACCAGAAAGTTACTTGAAGTGCTCAAGGAGTCTACCAAAATAGCAAAATGAAGAAATGCT-G-G---A-GAT-CA----CTTACAGGCAATGCTACCCCGATTTTTGTTACTAAAATATTTCTTGATCAAATTTTTGGAAGTGAACTTTGCGTCTAGAGAAGTTAATGCAGGCACCGGAATGTTGATATCCTTTTGTCAGTGCTGTGCTAGAGAGGTTTATGATATTTCATTTATCTTCTACAGTTTACTGTACGTATTCATTGCCAAGGTTGATGTTTTACTTTTCTTTTCAAGATATTTTTGAAGTCATATGCCTCTCATAGATTTCTGATCTTTGTTATATT-TTCCTCGCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730513" ref_strand="+" ref_description="SGN-E730513 [LA24BD12]">
      <seq>cgttctatggatcatctgttgaagcttaaaagtaacgttcagcggcgacgttttgatccttctgatctctttctctatgctgttactgactcaaggatgaacaaaaagtggggtcgttcaatagttgatgcagtaaaggctgccatagaaggaggtgcctccattattcagctgagggaaaaggaggttgaaactggtgattttctggaagcagcaaaagcttgtttaaaaatatgccgagttcatggtgttcctctgctgattaatgataggattgatgtagctcttgctagtgatgctgatggtgttcatattggacagtctgacatgcctgctcatgttgcgcgggctcttcttgggcctgacaaaatcattggtgtatcatgcaaaacaccggagcacgctcagcaagcatggatagatggggctgattacatcggctctggtggtgtatatcctaccaataccaaagagaacaataaaacaattggtttggatggtctaaaaactgtttgtgtgtcttccaaattaccagttgtagccattggcggcataggcatgtctaatgcgcaggctgtaatgcaactaggggtcccaaacctgaaaggcgttgctgttgtatctgctctgtttgatagggaatgtgttatgactgagaccagaaagttacttgaagtgctcaaggagtctaccaaaatagcaaaatgaagaaatgctggtgatcaccatacattctcttacaggcaatgctaccccgatttttgttactaaaatatttcttgatcaaatttttggaagtgaactttggtctagagaagttaatacaggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="4006" stop="1757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3707" g_stop="3532" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3531" i_stop="2712" i_length="820">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2711" g_stop="2057" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="831" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E730513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3707" e_stop="3532"/>
          <exon e_start="2711" e_stop="2057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTATGGATCATCTGTTGAAGCTTAAAAGTAACGTTCAGCGGCGACGTTTTGATCCTTCTGATCTCTTTCTCTATGCTGTTACTGACTCAAGGATGAACAAAAAGTGGGGTCGTTCAATAGTTGATGCAGTAAAGGCTGCCATAGAAGGAGGTGCCTCCATTATTCAGCTGAGGTTTGTGGCTTCTTTGAAATTGGTTCACTTTCTTTCCCTCTCTCATTCTTCCGATTGATTCCTCTGAGTAAGAAAGAACTGAGGATTTGTATTTACTAAGCCTAGGGTGGAGAGACCTATAAACGTTAGGACTATCCCAAGTTCTACATATCAATATTCTGATACAGTAGGATTTCATGCTCAACCAATGTTGGATGGTCTCCATGTGACATGCATGGCTGGATAACTGGAGTGTGTTTAACATAATACGGGAGGTCCGACACTGAAAAGCATAACAACAGGGATTCAGGGAGAAATTGGTCTTTGGCCCAACTCAACTTTAAAAGCTAGGTCATTCAGGGAGACTTGCCCAAGAGCATACAAGGAGACTAAGACCTGTTCTTGACTGAACACAGTTATTAATAGCAATTAACGTCTTCCAATAGAATTGACAATAACAATCCAAATGGCTGACTGATTTTAAATTGCATATTTAGCCTCTTTTTTGTGGTAGAATCATTAACCTATTGACAATATATCCTCAAACTTGAGAGGCATGGAAGTAATGCTCAATGGACTCAAAAGAATGTAAAGTCTACAAGATTTTTCAGAAGTAGACTTATGGATGTTATAAGCTACTCCCTTGTTTCATTTTATGGCGTAGTTTAACTGAACACGGAACTTATGAAAAAAAGAGAGGATACTTTTGAAATAAGAATTACACCCTTCTCTACATAGTTGCGACAACTAATAGCATTTTATTCTTAGATATCTTACTGCCATTTTAAGTAGAATCATTGAATTTATATTTTGATGTGGACTTTTTTGATTACGACTACAGGGAAAAGGAGGTTGAAACTGGTGATTTTCTGGAAGCAGCAAAAGCTTGTTTAAAAATATGCCGAGTTCATGGTGTTCCTCTGCTGATTAATGATAGGATTGATGTAGCTCTTGCTAGTGATGCTGATGGTGTTCATATTGGACAGTCTGACATGCCTGCTCATGTTGCGCGGGCTCTTCTTGGGCCTGACAAAATCATTGGTGTATCATGCAAAACACCGGAGCACGCTCAGCAAGCATGGATAGATGGGGCTGATTACATCGGCTCTGGTGGTGTATATCCTACCAATACCAAAGAGAACAATAAAACAATTGGTTTGGATGGTCTAAAAACTGTTTGTGTGTCTTCCAAATTACCAGTTGTAGCCATTGGCGGCATAGGCATGTCTAATGCGCAGGCTGTAATGCAACTAGGGGTCCCAAACCTGAAAGGCGTTGCTGTTGTATCTGCTCTGTTTGATAGGGAATGTGTTATGACTGAGACCAGAAAGTTACTTGAAGTGCTCAAGGAGTCTACCAAAATAGCAAAATGAAGAAATGCTGGTGATCACCATACATTCTCTTACAGGCAATGCTACCCCGATTTTTGTTACTAAAATATTTCTTGATCAAATTTTTGGAAGTGAACTTTGGTCTAGAGAAGTTAATACAGGCAC</genome_strand>
        <mrna_strand>CGTTCTATGGATCATCTGTTGAAGCTTAAAAGTAACGTTCAGCGGCGACGTTTTGATCCTTCTGATCTCTTTCTCTATGCTGTTACTGACTCAAGGATGAACAAAAAGTGGGGTCGTTCAATAGTTGATGCAGTAAAGGCTGCCATAGAAGGAGGTGCCTCCATTATTCAGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGGAGGTTGAAACTGGTGATTTTCTGGAAGCAGCAAAAGCTTGTTTAAAAATATGCCGAGTTCATGGTGTTCCTCTGCTGATTAATGATAGGATTGATGTAGCTCTTGCTAGTGATGCTGATGGTGTTCATATTGGACAGTCTGACATGCCTGCTCATGTTGCGCGGGCTCTTCTTGGGCCTGACAAAATCATTGGTGTATCATGCAAAACACCGGAGCACGCTCAGCAAGCATGGATAGATGGGGCTGATTACATCGGCTCTGGTGGTGTATATCCTACCAATACCAAAGAGAACAATAAAACAATTGGTTTGGATGGTCTAAAAACTGTTTGTGTGTCTTCCAAATTACCAGTTGTAGCCATTGGCGGCATAGGCATGTCTAATGCGCAGGCTGTAATGCAACTAGGGGTCCCAAACCTGAAAGGCGTTGCTGTTGTATCTGCTCTGTTTGATAGGGAATGTGTTATGACTGAGACCAGAAAGTTACTTGAAGTGCTCAAGGAGTCTACCAAAATAGCAAAATGAAGAAATGCTGGTGATCACCATACATTCTCTTACAGGCAATGCTACCCCGATTTTTGTTACTAAAATATTTCTTGATCAAATTTTTGGAAGTGAACTTTGGTCTAGAGAAGTTAATACAGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546392" ref_strand="+" ref_description="SGN-E546392 [TUS-69-L18]">
      <seq>cgcatttatgctctcaggttctatccacttccttcttcactcccaaaccccagattccagttctgttgagtcccggcgtagcttgtatcaaaagctttcatcaatataggtttttgcacatcaaggcgatgcaagacggtaagtttgccacgcctacgtcgtgcgatgagtccaaagttagagttcctcatgttctgacggttgccgggtccgattccggcgccggcgccggaattcaagcggatatcaaggcttgtgctgctcggggagtgtattgctccactgtgatcacggctgttactgctcaaaataccgtaggggttcagggtgtgaacattgtgccggaggattttgtagcagagcagttgagatcggtcctttccgacatgccgcccaatgttgtgaaaacaggcatgcttccgtcaactggcatagtgaaaaccctctgtcaaagtctgaaagaattccccgtacaagccttggtggttgaccctgttatggtatccacaagtggacatacattagctggtccctctattttggatagctttagagaggaacttcttcccatggccgatatagtgaccccaaatttgaaagaggcttctgctttactaggcggtgtgccattggaaacaattgccgacatgcgttctgctgcaaaagcaatacatgacattggtccaagaaatgtactcgtgaaaggaggcgatctccctgcttctcttgatgccgtggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="9169" stop="4908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8869" g_stop="8817" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8816" i_stop="8714" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.138" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8713" g_stop="8441" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="326" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8353" g_stop="8279" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="401" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8278" i_stop="7260" i_length="1019">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7259" g_stop="7184" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="477" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7183" i_stop="7110" i_length="74">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7109" g_stop="7034" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="553" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7033" i_stop="6641" i_length="393">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6640" g_stop="6506" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="688" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6505" i_stop="5263" i_length="1243">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5262" g_stop="5208" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="743" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E546392" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8869" e_stop="8817"/>
          <exon e_start="8713" e_stop="8441"/>
          <exon e_start="8353" e_stop="8279"/>
          <exon e_start="7259" e_stop="7184"/>
          <exon e_start="7109" e_stop="7034"/>
          <exon e_start="6640" e_stop="6506"/>
          <exon e_start="5262" e_stop="5208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTATGCTCTCAGGTTCTATCCACTTCCTTCTTCACTCCCAAACCTCAGGTAAAATCCCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAGGTATTAATAATCTCCACGAGGTTATAGTCTGTTGATATTTCGCTATTGTGTTCGCCTTTGTGAATTTTGTTGTGTGGTTTGTTCTAGGGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCACATCCATTTGGTAATTTTGTTTTCGGTATAATATATATTTTGAGGAATTGAAGAGTGTAATAGTCCCGGTCATTGATTAGATTATCAATAGTTATAGCCACACGTCAGTCAAGTTATGATAGTGCACAAACTGGAATATGAGTATATTCGTTTGGGAGTATTCATATATTGCTAATTTGATGCTCCTAAGTTTAGATTTCCTGTCACAGCATCAGTGGTGCTTATCTTATAGTAGGATTATACTCCCTGTTTCCTTCAAACTCTTTGCTTTTTATGTGTCTTTCAGTGTTGCCATTGAAAGCTGAATTAATCACTTGTATCCAGTTGTATAAAACTTACGTTGCCACTAGCCACGACATTTTTACAGGAAACGACATATAAAGAAACTCATAACTACGTACCAATAACTAGCATAGATAGTTTAGGAGGGAAAGGTTGGATGACTGAAATTAATGTAGATAGACCATCCCTTATAAAGGAAATGATTGGCTAATTTACTGGTTTTTCGAATTATCAGCACAATTTTCTTCAGTGACACATATTGGTTAAATTTCATGCTATTATTGTTTTCAGTCTTCTTTTTGGAATCCAAATGTCACCATATTTGTGAAATTAATACAAAGAATTAATTGTTATTTGGTTCATGGATACTCAGGGGGATAAAAGAGAGTTCCATGTTTGGTTAGCTTTGGGGACACTGTGATTTAATCCTGGAGGGTATTATTATCCTCTTTTATCAAAATTATACCATGCGACAGGCGGGGTAAAATGGTTATTTTAACAATATTAACCTACCTCTGTAGCTGACTCAAATGCTTTATTCAAGTCTTCTCGATTGTATATGTTGCACAACTGTATATACAACCTGATCCAGTATTCAAGCTATACATGGAATAAGTATACCAACATTATTTGGACTAAGCAATCTACAGTTTTCATTAATGTCTCAGTAGTCTATTTTGCGTCACAGCACTAAGATTGTCTTAGGTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAGGTAAACAATATATTTGTTCTGTTTTTGAAATTTCGACGACATTAACTATGCTGCTATCAAATGCTTGAAGACAGCCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTTAGGTATGTCACCTTGAGAGTGATAGACTCTTTCCATGCCCTCCGTGTAAACTCATGTGTATTATTGACTAAACATTTGTTTATTGCTAATCTTCTGCTGCCATATTCATGAAATATAAATCAATCTCTAAACTTCCTAGACAGACATGCTATCTATGGTAAATTGTCACATGCTTGGATAGTTGGATTAAGCATGACCATCATTATGTCTTTAATTTCCACTGCTTTTGTGATAAATCTTGAAGCACAATATATGAAATTTCATTGATATTTGTAGTGATGTAATTTTCACATTTATATGCTGTAATGTCGTGTGGAATCTTCTATGTTTATTCTCTATGTTGCAACTCATTGGATAATCATGTCCAATCATAGCCTTTCATTTTCTGATAACAGGGAGGAGCTTCTTCCCATGGCCGATATAGTGACCCCAAATTTGAAAGAGGCTTCTGCTTTACTAGGCGGTGTGCCATTGGAAACAATTGCCGACATGCGTTCTGCTGCAAAAGCAATACATGACATTGGTCCAAGGTTAATTTTTGAGATTTTTCTTTCAAACAGTGAAATTGATATCTTGACCTTGTACTACTTATGGACAAAGTCCATTGCTGGAAAAAATATCGTGCATAGCCATCACTTACAAGAAGGAACTAAATACCTTTTAAATCAGTCAAACCATCATTTGCTGTACAATGTAACACCACCCCTTGTGCATTTCCTCTATGCAAATCCAACTAGCCGTCATTCTCAACCTTGTTTTATCGGTATGTAGAGGTGTGATATACACGAATTCTACATTTGGCTTCCACAGAACAGTAATTTGCATATGGGTCTTAGCACCCTCATCTGCAGTTAGTCTTCATGTTCTGCTATTAACTACAATGGCCAGGGTTCAACAACTGAGCACGCTTCATCCGTGATTGCTGGAAATATGAGGCCCAAGTTGTTGATTAGGGCAACCAAAGCATTATGAATCATCAGAACTATCACGGTATCACCCATTCACATGTAGCAGGAAGTTAGTTATACACATCTTATATCTGAAGCTGCATGTCTTGAAAATGAAAAAACAAAATTTTCACTTTCTTAACAATTGAAGACTTCGAGGAGATCTTCTGTGAATGGATCTATGCCTACTTCATCTTGCTTAGTGGGAAAATTAACTTGGGAGTGAACTAGAACTGAATAAAATAGAACTTGTAGATGTGTTGATTATTTGATAGGCTCACTGTAAAATTCTTTTTGCAGAGTAGGGTTCTTGGCTTATTTGTAATTATGGTGCTGCCTTAGCTTAGTAGTGTGATTGTATCATAAATACATATTTTACCAGCTTCAATAAAAAAAGAAGAAGAAGAAACTTGTAGATGCTTGAAAAGGAGTTTAGGGGCTCATTTTCTGGGTGCTCTAAACAGAGTAAATTCAATCCTTCTCCAGCTTCTCCTTGATTTGGGGCTATAAGAGTGGGAGAAGAATGATCAGCATTTCAAACAGAAGGAGAATGCTCTTTTACACATTTGAAGGTTTAAAATTGTTTAGTATTCGGCAATAAGAAATAGAATAAAATCTTGCAAAGCTTATGCTGAGTTCAAGTTTTTTGGTATTAGTTCCAGAGTGTAGTGCAATTAGGGAAGATCTACAAAAAGTAAAATAAAAATTAATGAAACTAGGAAGACCGAAGATGTGTATTCTCTTCTTTTTGTTTTATGTCACAGCGGAGTCTTTCAAAGAAGATTTTGTCTTCTGATGTGTTAAAATCTCTTAAATTTTTGGACAGAAATGTACTCGTGAAAGGAGGCGATCTCCCTGCTTCTCTTGATGCTGTGGATGTG</genome_strand>
        <mrna_strand>CGCATTTATGCTCTCAGGTTCTATCCACTTCCTTCTTCACTCCCAAACCCCAG.......................................................................................................ATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAATATAGGTTTTTGCACATCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG.......................................................................................GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGACATGCCGCCCAATGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAAGAATTCCCCGTACAAG..........................................................................CCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAACTTCTTCCCATGGCCGATATAGTGACCCCAAATTTGAAAGAGGCTTCTGCTTTACTAGGCGGTGTGCCATTGGAAACAATTGCCGACATGCGTTCTGCTGCAAAAGCAATACATGACATTGGTCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTACTCGTGAAAGGAGGCGATCTCCCTGCTTCTCTTGATGCCGTGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314719" ref_strand="+" ref_description="SGN-E314719 [cTOA-20-O13]">
      <seq>ttctatccacttccttcttcactcccaaacctcagattccagttctgttgagtcccggcgtagcttgtatcaaaagctttcatcagtataggtttttgcacgtcaaggcgatgcaagacggtaagtttgccacgcctacgtcgtgcgatgagtccaaagttagagttcctcatgttctgacggttgccgggtccgattccggcgccggcgccggaattcaagcggatatcaaggcttgtgctgctcggggagtgtattgctccactgtgatcacggctgttactgctcaaaataccgtaggggttcagggtgtgaacattgtgccggaggattttgtagcagagcagttgagatcggtcctttccgatatgccgcccaatgttgcatgcttccgtcaactggcatagtgaaaaccctctgtcaaagtctgaaggaattccccgtacaagccttggtggttgaccctgttatggtatccacaagtggacatacattagctggtccctctattttggatagctttanggaggagcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="9151" stop="6729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8851" g_stop="8817" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8816" i_stop="8714" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.138" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8713" g_stop="8441" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="308" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8353" g_stop="8279" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="383" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8278" i_stop="7250" i_length="1029">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7249" g_stop="7184" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="449" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7183" i_stop="7110" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7109" g_stop="7034" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="525" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E314719" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8851" e_stop="8817"/>
          <exon e_start="8713" e_stop="8441"/>
          <exon e_start="8353" e_stop="8279"/>
          <exon e_start="7249" e_stop="7184"/>
          <exon e_start="7109" e_stop="7034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCCACTTCCTTCTTCACTCCCAAACCTCAGGTAAAATCCCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAGGTATTAATAATCTCCACGAGGTTATAGTCTGTTGATATTTCGCTATTGTGTTCGCCTTTGTGAATTTTGTTGTGTGGTTTGTTCTAGGGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCACATCCATTTGGTAATTTTGTTTTCGGTATAATATATATTTTGAGGAATTGAAGAGTGTAATAGTCCCGGTCATTGATTAGATTATCAATAGTTATAGCCACACGTCAGTCAAGTTATGATAGTGCACAAACTGGAATATGAGTATATTCGTTTGGGAGTATTCATATATTGCTAATTTGATGCTCCTAAGTTTAGATTTCCTGTCACAGCATCAGTGGTGCTTATCTTATAGTAGGATTATACTCCCTGTTTCCTTCAAACTCTTTGCTTTTTATGTGTCTTTCAGTGTTGCCATTGAAAGCTGAATTAATCACTTGTATCCAGTTGTATAAAACTTACGTTGCCACTAGCCACGACATTTTTACAGGAAACGACATATAAAGAAACTCATAACTACGTACCAATAACTAGCATAGATAGTTTAGGAGGGAAAGGTTGGATGACTGAAATTAATGTAGATAGACCATCCCTTATAAAGGAAATGATTGGCTAATTTACTGGTTTTTCGAATTATCAGCACAATTTTCTTCAGTGACACATATTGGTTAAATTTCATGCTATTATTGTTTTCAGTCTTCTTTTTGGAATCCAAATGTCACCATATTTGTGAAATTAATACAAAGAATTAATTGTTATTTGGTTCATGGATACTCAGGGGGATAAAAGAGAGTTCCATGTTTGGTTAGCTTTGGGGACACTGTGATTTAATCCTGGAGGGTATTATTATCCTCTTTTATCAAAATTATACCATGCGACAGGCGGGGTAAAATGGTTATTTTAACAATATTAACCTACCTCTGTAGCTGACTCAAATGCTTTATTCAAGTCTTCTCGATTGTATATGTTGCACAACTGTATATACAACCTGATCCAGTATTCAAGCTATACATGGAATAAGTATACCAACATTATTTGGACTAAGCAATCTACAGTTTTCATTAATGTCTCAGTAGTCTATTTTGCGTCACAGCACTAAGATTGTCTTAGGTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAGGTAAACAATATATTTGTTCTGTTTTTGAAATTTCGACGACATTAACTATGCTGCTATCAAATGCTTGAAGACAGCCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTTAG</genome_strand>
        <mrna_strand>TTCTATCCACTTCCTTCTTCACTCCCAAACCTCAG.......................................................................................................ATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG.......................................................................................GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAG..........................................................................CCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314706" ref_strand="+" ref_description="SGN-E314706 [cTOA-20-I11]">
      <seq>ttctatccacttccttcttcactcccaaacctcagattccagttctgttgagtcccggcgtagcttgtatcaaaagctttcatcagtataggtttttgcacgtcaaggcgatgcaagacggtaagtttgccacgcctacgtcgtgcgatgagtccaaagttagagttcctcatgttctgacggttgccgggtccgattccggcgccggcgccggaattcaagcggatatcaaggcttgtgctgctcggggagtgtattgctccactgtgatcacggctgttactgctcaaaataccgtaggggttcagggtgtgaacattgtgccggaggattttgtagcagagcagttgagatcggtcctttccgatatgccgcccaatgttgcatgcttccgtcaactggcatagtgaaaaccctctgtcaaagtctgaaggaattccccgtacaagccttggtggttgaccctgttatggtatccacaagtggacatacattagctggtccctctattttggatagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="9151" stop="6736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8851" g_stop="8817" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8816" i_stop="8714" i_length="103">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.138" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8713" g_stop="8441" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="308" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8353" g_stop="8279" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="383" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8278" i_stop="7250" i_length="1029">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7249" g_stop="7184" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="449" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7183" i_stop="7110" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7109" g_stop="7036" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="523" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E314706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8851" e_stop="8817"/>
          <exon e_start="8713" e_stop="8441"/>
          <exon e_start="8353" e_stop="8279"/>
          <exon e_start="7249" e_stop="7184"/>
          <exon e_start="7109" e_stop="7036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCCACTTCCTTCTTCACTCCCAAACCTCAGGTAAAATCCCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAGGTATTAATAATCTCCACGAGGTTATAGTCTGTTGATATTTCGCTATTGTGTTCGCCTTTGTGAATTTTGTTGTGTGGTTTGTTCTAGGGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCACATCCATTTGGTAATTTTGTTTTCGGTATAATATATATTTTGAGGAATTGAAGAGTGTAATAGTCCCGGTCATTGATTAGATTATCAATAGTTATAGCCACACGTCAGTCAAGTTATGATAGTGCACAAACTGGAATATGAGTATATTCGTTTGGGAGTATTCATATATTGCTAATTTGATGCTCCTAAGTTTAGATTTCCTGTCACAGCATCAGTGGTGCTTATCTTATAGTAGGATTATACTCCCTGTTTCCTTCAAACTCTTTGCTTTTTATGTGTCTTTCAGTGTTGCCATTGAAAGCTGAATTAATCACTTGTATCCAGTTGTATAAAACTTACGTTGCCACTAGCCACGACATTTTTACAGGAAACGACATATAAAGAAACTCATAACTACGTACCAATAACTAGCATAGATAGTTTAGGAGGGAAAGGTTGGATGACTGAAATTAATGTAGATAGACCATCCCTTATAAAGGAAATGATTGGCTAATTTACTGGTTTTTCGAATTATCAGCACAATTTTCTTCAGTGACACATATTGGTTAAATTTCATGCTATTATTGTTTTCAGTCTTCTTTTTGGAATCCAAATGTCACCATATTTGTGAAATTAATACAAAGAATTAATTGTTATTTGGTTCATGGATACTCAGGGGGATAAAAGAGAGTTCCATGTTTGGTTAGCTTTGGGGACACTGTGATTTAATCCTGGAGGGTATTATTATCCTCTTTTATCAAAATTATACCATGCGACAGGCGGGGTAAAATGGTTATTTTAACAATATTAACCTACCTCTGTAGCTGACTCAAATGCTTTATTCAAGTCTTCTCGATTGTATATGTTGCACAACTGTATATACAACCTGATCCAGTATTCAAGCTATACATGGAATAAGTATACCAACATTATTTGGACTAAGCAATCTACAGTTTTCATTAATGTCTCAGTAGTCTATTTTGCGTCACAGCACTAAGATTGTCTTAGGTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAGGTAAACAATATATTTGTTCTGTTTTTGAAATTTCGACGACATTAACTATGCTGCTATCAAATGCTTGAAGACAGCCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTT</genome_strand>
        <mrna_strand>TTCTATCCACTTCCTTCTTCACTCCCAAACCTCAG.......................................................................................................ATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG.......................................................................................GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAG..........................................................................CCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358731" ref_strand="+" ref_description="SGN-E358731 [cLHT-24-E9]">
      <seq>gcatttatgctctcaggttctatccacttccttcttcactcccaaaccccagattccagttctgttgagtcccggcgtagcttgtatcaaaagctttcatcaatataggtttttgcacatcaaggcgatgcaagacggtaagtttgccacgcctacgtcgtgcgatgagtccaaagttagagttcctcatgttctgacggttgccgggtccgattccggcgccggcgccggaattcaagcggatatcaaggcttgtgctgctcggggagtgtattgctccactgtgatcacggctgttactgctcaaaataccgtaggggttcagggtgtgaacattgtgccggaggattttgtagcagagcagttgagatcggtcctttccgacatgccgcccaatgttgtgaaaacaggcatgcttccgtcaactggcatagtgaaaaccctctgtcaaagtctgaaagaattccccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="9168" stop="6889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8868" g_stop="8817" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8816" i_stop="8714" i_length="103">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.138" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8713" g_stop="8441" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="325" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8353" g_stop="8279" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="400" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8278" i_stop="7260" i_length="1019">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7259" g_stop="7189" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="471" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E358731" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8868" e_stop="8817"/>
          <exon e_start="8713" e_stop="8441"/>
          <exon e_start="8353" e_stop="8279"/>
          <exon e_start="7259" e_stop="7189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTATGCTCTCAGGTTCTATCCACTTCCTTCTTCACTCCCAAACCTCAGGTAAAATCCCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAGGTATTAATAATCTCCACGAGGTTATAGTCTGTTGATATTTCGCTATTGTGTTCGCCTTTGTGAATTTTGTTGTGTGGTTTGTTCTAGGGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCACATCCATTTGGTAATTTTGTTTTCGGTATAATATATATTTTGAGGAATTGAAGAGTGTAATAGTCCCGGTCATTGATTAGATTATCAATAGTTATAGCCACACGTCAGTCAAGTTATGATAGTGCACAAACTGGAATATGAGTATATTCGTTTGGGAGTATTCATATATTGCTAATTTGATGCTCCTAAGTTTAGATTTCCTGTCACAGCATCAGTGGTGCTTATCTTATAGTAGGATTATACTCCCTGTTTCCTTCAAACTCTTTGCTTTTTATGTGTCTTTCAGTGTTGCCATTGAAAGCTGAATTAATCACTTGTATCCAGTTGTATAAAACTTACGTTGCCACTAGCCACGACATTTTTACAGGAAACGACATATAAAGAAACTCATAACTACGTACCAATAACTAGCATAGATAGTTTAGGAGGGAAAGGTTGGATGACTGAAATTAATGTAGATAGACCATCCCTTATAAAGGAAATGATTGGCTAATTTACTGGTTTTTCGAATTATCAGCACAATTTTCTTCAGTGACACATATTGGTTAAATTTCATGCTATTATTGTTTTCAGTCTTCTTTTTGGAATCCAAATGTCACCATATTTGTGAAATTAATACAAAGAATTAATTGTTATTTGGTTCATGGATACTCAGGGGGATAAAAGAGAGTTCCATGTTTGGTTAGCTTTGGGGACACTGTGATTTAATCCTGGAGGGTATTATTATCCTCTTTTATCAAAATTATACCATGCGACAGGCGGGGTAAAATGGTTATTTTAACAATATTAACCTACCTCTGTAGCTGACTCAAATGCTTTATTCAAGTCTTCTCGATTGTATATGTTGCACAACTGTATATACAACCTGATCCAGTATTCAAGCTATACATGGAATAAGTATACCAACATTATTTGGACTAAGCAATCTACAGTTTTCATTAATGTCTCAGTAGTCTATTTTGCGTCACAGCACTAAGATTGTCTTAGGTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGT</genome_strand>
        <mrna_strand>GCATTTATGCTCTCAGGTTCTATCCACTTCCTTCTTCACTCCCAAACCCCAG.......................................................................................................ATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAATATAGGTTTTTGCACATCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG.......................................................................................GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGACATGCCGCCCAATGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAAGAATTCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317622" ref_strand="+" ref_description="SGN-E317622 [cTOB-8-G6]">
      <seq>ccattccttcgcttgctaccctagggtatttacgaagctggcggctgctatgaaaaaaaactacactcgattctcatatgaatttcaattgttagattccagttctgttgagtcccggcgtagcttgtatcaaaagctttcatcagtataggtttttgcacgtcaaggcgatgcaagacggttagtttgccacgcctacgtcgtgcgatgagtccaaagttagagttcctcatgttctgacggttgccgggtccgattccggcgccggcgccggaattcaagcggatatcaaggctagtgctgctcggggagtgtattgctccactgtgatcacggctgttactgctcaagataccgtaggggttcagggtgtgaacattgtgcctgaggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="9108" stop="8026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8808" g_stop="8441" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8353" g_stop="8326" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="396" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E317622" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8808" e_stop="8441"/>
          <exon e_start="8353" e_stop="8326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAGGTATTAATAATCTCCACGAGGTTATAGTCTGTTGATATTTCGCTATTGTGTTCGCCTTTGTGAATTTTGTTGTGTGGTTTGTTCTAGGGTGTGAACATTGTGCCGGAGGATTTTG</genome_strand>
        <mrna_strand>CCATTCCTTCGCTTGCTACCCTAGGGTATTTACGAAGCTGGCGGCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTTAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTAGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAGATACCGTAGGGGTTCAG.......................................................................................GGTGTGAACATTGTGCCTGAGGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202056" ref_strand="+" ref_description="SGN-E202056 [cLEC-7-D16]">
      <seq>tgtcatcccccacctcgcttcactctgctttttcaactaaaacttgcagaaattgaagagcaaaaaactgaaggatctgatatttattttctgaattattgtatagtttgatggggtggtaagagatcagctctctgtagaatttttctttatgaaaaactatgaggattatgaaaaaccctaacatatctagctcgattaaggatggagatgtgaagatggaggaggaagaaggtgtaaagagaaggagggaaagtgaaaagccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattggtaccggaggcatcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="28946" stop="30115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29246" g_stop="29590" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29815" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="450" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E202056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29246" e_stop="29590"/>
          <exon e_start="29711" e_stop="29815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATCCCCCACCTCGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTAC</genome_strand>
        <mrna_strand>TGTCATCCCCCACCTCGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202126" ref_strand="+" ref_description="SGN-E202126 [cLEC-7-O23]">
      <seq>tgtcatcccccacctcgcttcactctgctttttcaactaaaacttgcagaaattgaagagcaaaaaactgaaggatctgatatttattttctgaattattgtatagtttgatggggtggtaagagatcagctctctgtagaatttttctttatgaaaaactatgaggattatgaaaaaccctaacatatctagctcgattaaggatggagatgtgaagatggaggaggaagaaggtgtaaagagaaggagggaaagtgaaaagccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="28946" stop="30097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29246" g_stop="29590" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29797" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="432" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E202126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29246" e_stop="29590"/>
          <exon e_start="29711" e_stop="29797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATCCCCCACCTCGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGG</genome_strand>
        <mrna_strand>TGTCATCCCCCACCTCGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723042" ref_strand="+" ref_description="SGN-E723042 [FC19AF12]">
      <seq>cggccgaattggcttcactctgctcctttactaaaacttgcagaaattgaagagcaaaaaactgaaggatctgatatttattttctgaattattgtatagtttgatggggtggtaagagatcagctctctgtagaatttttctttatgaaaaactatgaggattatgaaaaaccctaacatatctagctcgattaaggatggagatgtgaagatggaggaggaagaaggtgtaaagagaaggagggaaagtgaaaagccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattggtaccggaggcatcattacttgttcaacaggaaaaggatgttgtcgagctgcttaaaaagattaggcggtacaatcacatctacattagtggcgcttatgggatttttctcaaggtactagcactgccgcttttaactcggagagttctccgagcactgatggacactctgatggatcctgatcaagttcgattaaactattacttgatgcgcattttcgcattgttcctgagttggatctactggggctgcgaatttcagttcattcctactggaggactgggaatctggaggttgtttgacatctgtgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="28954" stop="32603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29251" g_stop="29590" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29907" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="536" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29908" i_stop="31239" i_length="1332">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31240" g_stop="31350" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="647" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31351" i_stop="31866" i_length="516">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31867" g_stop="31918" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="699" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32263" g_stop="32303" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="740" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E723042" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29251" e_stop="29590"/>
          <exon e_start="29711" e_stop="29907"/>
          <exon e_start="31240" e_stop="31350"/>
          <exon e_start="31867" e_stop="31918"/>
          <exon e_start="32263" e_stop="32303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCCACCTCGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTCGTAAGGCTGTTGTCTTAGAAACTTTATTTCTGCAATGTGATTCTCAGTTTACTGTTTTATTGGGGATGTTAAAGTTATGTATCTTGAGCCTAACTCGAGGTGAGATTGTCCAAGTCATATTAAAGAGACCATCCATCCATTAAAGGGCTGGTTTGGGACTCTTCATGCTCATTTCACGCCCAGTACTTTTTATAAAACTCTATTAGCATCTCCAGTTGAGGATTTATTGTTCTATAAAAGTATCCCAAACTAGTTCCCCTACTGTTTGTGATGTCACTTCATTCTTTTATAATTTCAACCTCTCTTTGTTTTTACCTATGGTAGGAAATTGTGTAACGTTACCCTAGTTAAGTGGATTTAATTAGATACAAGGAGGTCCATCTTAGAAATTCTGCTTGAAGTTGGTGCAGATTTAACTAATATATTGAGCCAGCTGGAAGAGGTAATAAGCAGTCAGGAAGTGATACAAATAAAATGTTGTCAGAGAGCCAACCTTTCAGTCTGATACCCTTCTTTCTGATGTGGTACAGTGGCAGTTAGCAGAAGGGGGAGAGATCTGATGTGGATAACTCCTAACACTTTCTGGTCCCAACTCTGAAAGATATGTGGTACAATTGTACAAGTATGTTGAGTACAAGTAAAGCATATCACAATTAGATCTTACCTCTGATGCAAGTTGTTACTAGCATTGGTGAATAATGTAATCTTTGACAATAAGTTAATATTTGGGTGCTGCAGCCTTGCATTTTGTTCCTCATTAAAGATTGTTGCTGACCTTTCTTCTCAGCCATAGCTCTATGTGATTTTATGCTTAATTAAATAATGGTAAAACAAATTAATTTGTTTTGTGAGTGCACTGAGAAGACAAGACTACCTGAGCAATAATTTGAGGTCTTGGAGGAGCTAGCTCTTAAAAGTGAACTTCTCTGAATGGAAGGACACTTGTGGAGGATTCTTTGAGTTGGGAAGTGTCTCTGTTACCTTATCTTCTCATATTAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAATGTAAGTACTGTACTATGCAAAACCAAAAGACCACTTATTTTATTGAGCATTCCTTTTTGTTTTATGATGTAATTATGTTATAAATCATCTTTATTATAGAGTTTGTTTTCTGATTGTTTAGCTTTTAGCTTCTTTCGGCACAGTTGGTCGCTCTTAAAGTTAATCCTTTATGTTCACTGCAGTTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTGGTATTCTACTTGTCATACTCTATTGAAGAACTAGATTTGTATGGCATGGCATGATGTTAAGTTTTATGATTATTGCAGCCATAAGAAACTGGCGAATCTCATCCTTTGTAGGGGCGCTGATTTTAGAATCATTTATACCATTAATATATGGTCATGACAATGCGACTTAATAGAGTAGTCCATACTAATGAAACAAGAGAGTATCTCGTAGAATGAGTTGTTTGTTTGGTTTATAGAGAACTGTTCTAATTCACTTCTAGGACTTCCCAGGTCTTGATTCTTCATGCAGTCATTGAGGATGTTGCTGAATTTTGAACATAAGCTGATTAATGTCTTGTTTGTAGGAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATT</genome_strand>
        <mrna_strand>CGGCCGAATTGGCTTCACTCTGCTCCTT-TACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG........................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724572" ref_strand="+" ref_description="SGN-E724572 [FC24CA12]">
      <seq>ggcttcactctgctctttaactaaaacttgcagaaattgaagagcaaaaaactgaaggatctgatatttattttctgaattattgtatagtttgatggggtggtaagagatcagctctctgtagaatttttctttatgaaaaactatgaggattatgaaaaaccctaacatatctagctcgattaaggatggagatgtgaagatggaggaggaagaaggtgtaaagagaaggagggaaagtgaaaagccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattggtaccggaggcatcattacttgttcaacaggaaaaggatgttgtcgagctgcttaaaaagattaggcggtacaatcacatctacattagtggcgcttatgggatttttctcaaggtactagcactgccgcttttaactcggagagttctccgagcactgatggacactctgatggatcctgatcaagttcgattaaactattacttgatgcgcattttcgcattgttcctgagttggatctactggggctgcgaatttcagttcattcctactggaggactgggaatctggaggttgtttgacatctgtgctattgccacggtagccattttctatatagttggtctataccatagatgggtgcttcgtcgtcgtgtgagacagttggctgttctaccaatacatcctgattgaaagcctatgccttcttacccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="28962" stop="32725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29261" g_stop="29590" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29907" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="526" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29908" i_stop="31239" i_length="1332">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31240" g_stop="31350" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="637" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31351" i_stop="31866" i_length="516">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31867" g_stop="31918" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="689" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32263" g_stop="32425" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="852" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E724572" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29261" e_stop="29590"/>
          <exon e_start="29711" e_stop="29907"/>
          <exon e_start="31240" e_stop="31350"/>
          <exon e_start="31867" e_stop="31918"/>
          <exon e_start="32263" e_stop="32425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTCGTAAGGCTGTTGTCTTAGAAACTTTATTTCTGCAATGTGATTCTCAGTTTACTGTTTTATTGGGGATGTTAAAGTTATGTATCTTGAGCCTAACTCGAGGTGAGATTGTCCAAGTCATATTAAAGAGACCATCCATCCATTAAAGGGCTGGTTTGGGACTCTTCATGCTCATTTCACGCCCAGTACTTTTTATAAAACTCTATTAGCATCTCCAGTTGAGGATTTATTGTTCTATAAAAGTATCCCAAACTAGTTCCCCTACTGTTTGTGATGTCACTTCATTCTTTTATAATTTCAACCTCTCTTTGTTTTTACCTATGGTAGGAAATTGTGTAACGTTACCCTAGTTAAGTGGATTTAATTAGATACAAGGAGGTCCATCTTAGAAATTCTGCTTGAAGTTGGTGCAGATTTAACTAATATATTGAGCCAGCTGGAAGAGGTAATAAGCAGTCAGGAAGTGATACAAATAAAATGTTGTCAGAGAGCCAACCTTTCAGTCTGATACCCTTCTTTCTGATGTGGTACAGTGGCAGTTAGCAGAAGGGGGAGAGATCTGATGTGGATAACTCCTAACACTTTCTGGTCCCAACTCTGAAAGATATGTGGTACAATTGTACAAGTATGTTGAGTACAAGTAAAGCATATCACAATTAGATCTTACCTCTGATGCAAGTTGTTACTAGCATTGGTGAATAATGTAATCTTTGACAATAAGTTAATATTTGGGTGCTGCAGCCTTGCATTTTGTTCCTCATTAAAGATTGTTGCTGACCTTTCTTCTCAGCCATAGCTCTATGTGATTTTATGCTTAATTAAATAATGGTAAAACAAATTAATTTGTTTTGTGAGTGCACTGAGAAGACAAGACTACCTGAGCAATAATTTGAGGTCTTGGAGGAGCTAGCTCTTAAAAGTGAACTTCTCTGAATGGAAGGACACTTGTGGAGGATTCTTTGAGTTGGGAAGTGTCTCTGTTACCTTATCTTCTCATATTAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAATGTAAGTACTGTACTATGCAAAACCAAAAGACCACTTATTTTATTGAGCATTCCTTTTTGTTTTATGATGTAATTATGTTATAAATCATCTTTATTATAGAGTTTGTTTTCTGATTGTTTAGCTTTTAGCTTCTTTCGGCACAGTTGGTCGCTCTTAAAGTTAATCCTTTATGTTCACTGCAGTTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTGGTATTCTACTTGTCATACTCTATTGAAGAACTAGATTTGTATGGCATGGCATGATGTTAAGTTTTATGATTATTGCAGCCATAAGAAACTGGCGAATCTCATCCTTTGTAGGGGCGCTGATTTTAGAATCATTTATACCATTAATATATGGTCATGACAATGCGACTTAATAGAGTAGTCCATACTAATGAAACAAGAGAGTATCTCGTAGAATGAGTTGTTTGTTTGGTTTATAGAGAACTGTTCTAATTCACTTCTAGGACTTCCCAGGTCTTGATTCTTCATGCAGTCATTGAGGATGTTGCTGAATTTTGAACATAAGCTGATTAATGTCTTGTTTGTAGGAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGA</genome_strand>
        <mrna_strand>GGCTTCACTCTGCTCTTT-AACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG........................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702524" ref_strand="+" ref_description="SGN-E702524 [FA18DH02]">
      <seq>gcttcactctgctttttcactaaaacttgcagaaattgaagagcaaaaaactgaaggatctgatatttattttctgaattattgtatagtttgatggggtggtaagagatcagctctctgtagaatttttctttatgaaaaactatgaggattatgaaaaaccctaacatatctagctcgattaaggatggagatgtgaagatggaggaggaagaaggtgtaaagagaaggagggaaagtgaaaagccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattggtaccggaggcatcattacttgttcaacaggaaaaggatgttgtcgagctgcttaaaaagattaggcggtacaatcacatctacattagtggcgcttatgggatttttctcaaggtactagcactgccgcttttaactcggagagttctccgagcactgatggacactctgatggatcctgatcaagttcgattaaactattacttgatgcgcattttcgcattgttcctgagttggatctactggggctgcgaatttcagttcattcctactggaggactgggaatctggaggttgtttgacatctgtgctattgccacggtagccattttctatatagttggtctataccatagatgggtgcttcgtcgtcgtgtgagacagttggctgttctaccaatacatcctgattgaaagcctatgccttcttacccggaatctttgctgtgaatatatctcaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="28962" stop="32755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29262" g_stop="29590" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29907" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="525" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29908" i_stop="31239" i_length="1332">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31240" g_stop="31350" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="636" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31351" i_stop="31866" i_length="516">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31867" g_stop="31918" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="688" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32263" g_stop="32455" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="880" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E702524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29262" e_stop="29590"/>
          <exon e_start="29711" e_stop="29907"/>
          <exon e_start="31240" e_stop="31350"/>
          <exon e_start="31867" e_stop="31918"/>
          <exon e_start="32263" e_stop="32455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTCGTAAGGCTGTTGTCTTAGAAACTTTATTTCTGCAATGTGATTCTCAGTTTACTGTTTTATTGGGGATGTTAAAGTTATGTATCTTGAGCCTAACTCGAGGTGAGATTGTCCAAGTCATATTAAAGAGACCATCCATCCATTAAAGGGCTGGTTTGGGACTCTTCATGCTCATTTCACGCCCAGTACTTTTTATAAAACTCTATTAGCATCTCCAGTTGAGGATTTATTGTTCTATAAAAGTATCCCAAACTAGTTCCCCTACTGTTTGTGATGTCACTTCATTCTTTTATAATTTCAACCTCTCTTTGTTTTTACCTATGGTAGGAAATTGTGTAACGTTACCCTAGTTAAGTGGATTTAATTAGATACAAGGAGGTCCATCTTAGAAATTCTGCTTGAAGTTGGTGCAGATTTAACTAATATATTGAGCCAGCTGGAAGAGGTAATAAGCAGTCAGGAAGTGATACAAATAAAATGTTGTCAGAGAGCCAACCTTTCAGTCTGATACCCTTCTTTCTGATGTGGTACAGTGGCAGTTAGCAGAAGGGGGAGAGATCTGATGTGGATAACTCCTAACACTTTCTGGTCCCAACTCTGAAAGATATGTGGTACAATTGTACAAGTATGTTGAGTACAAGTAAAGCATATCACAATTAGATCTTACCTCTGATGCAAGTTGTTACTAGCATTGGTGAATAATGTAATCTTTGACAATAAGTTAATATTTGGGTGCTGCAGCCTTGCATTTTGTTCCTCATTAAAGATTGTTGCTGACCTTTCTTCTCAGCCATAGCTCTATGTGATTTTATGCTTAATTAAATAATGGTAAAACAAATTAATTTGTTTTGTGAGTGCACTGAGAAGACAAGACTACCTGAGCAATAATTTGAGGTCTTGGAGGAGCTAGCTCTTAAAAGTGAACTTCTCTGAATGGAAGGACACTTGTGGAGGATTCTTTGAGTTGGGAAGTGTCTCTGTTACCTTATCTTCTCATATTAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAATGTAAGTACTGTACTATGCAAAACCAAAAGACCACTTATTTTATTGAGCATTCCTTTTTGTTTTATGATGTAATTATGTTATAAATCATCTTTATTATAGAGTTTGTTTTCTGATTGTTTAGCTTTTAGCTTCTTTCGGCACAGTTGGTCGCTCTTAAAGTTAATCCTTTATGTTCACTGCAGTTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTGGTATTCTACTTGTCATACTCTATTGAAGAACTAGATTTGTATGGCATGGCATGATGTTAAGTTTTATGATTATTGCAGCCATAAGAAACTGGCGAATCTCATCCTTTGTAGGGGCGCTGATTTTAGAATCATTTATACCATTAATATATGGTCATGACAATGCGACTTAATAGAGTAGTCCATACTAATGAAACAAGAGAGTATCTCGTAGAATGAGTTGTTTGTTTGGTTTATAGAGAACTGTTCTAATTCACTTCTAGGACTTCCCAGGTCTTGATTCTTCATGCAGTCATTGAGGATGTTGCTGAATTTTGAACATAAGCTGATTAATGTCTTGTTTGTAGGAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTT</genome_strand>
        <mrna_strand>GCTTCACTCTGCTTTTTC-ACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG........................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAA-TCTTTGCTGTGAATATATCTCAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707785" ref_strand="+" ref_description="SGN-E707785 [FA33DH06]">
      <seq>caatacttgcagaaattgaagagcaaaaaactgaaggatctgatatttattttctgaattattgtatagtttgatggggtggtaagagatcagctctctgtagaatttttctttatgaaaaactatgaggattatgaaaaaccctaacatatctagctcgattaaggatggagatgtgaagatggaggaggaagaaggtgtaaagagaaggagggaaagtgaaaagccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattggtaccggaggcatcattacttgttcaacaggaaaaggatgttgtcgagctgcttaaaaagattaggcggtacaatcacatctacattagtggcgcttatgggatttttctcaaggtactagcactgccgcttttaactcggagagttctccgagcactgatggacactctgatggatcctgatcaagttcgattaaactattacttgatgcgcattttcgcattgttcctgagttggatctactggggctgcgaatttcagttcattcctactggaggactgggaatctggaggttgtttgacatctgtgctattgccacggtagccattttctatatagttggtctataccatagatgggtgcttcgtcgtcgtgtgagacagttggctgttctaccaatacatcctgattgaaagcctatgccttcttacccggaagtctttgctgtgaatatatctcaatgtttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="28984" stop="32760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29283" g_stop="29590" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29907" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="505" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29908" i_stop="31239" i_length="1332">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31240" g_stop="31350" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="616" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31351" i_stop="31866" i_length="516">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31867" g_stop="31918" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="668" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32263" g_stop="32460" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="866" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E707785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29283" e_stop="29590"/>
          <exon e_start="29711" e_stop="29907"/>
          <exon e_start="31240" e_stop="31350"/>
          <exon e_start="31867" e_stop="31918"/>
          <exon e_start="32263" e_stop="32460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTCGTAAGGCTGTTGTCTTAGAAACTTTATTTCTGCAATGTGATTCTCAGTTTACTGTTTTATTGGGGATGTTAAAGTTATGTATCTTGAGCCTAACTCGAGGTGAGATTGTCCAAGTCATATTAAAGAGACCATCCATCCATTAAAGGGCTGGTTTGGGACTCTTCATGCTCATTTCACGCCCAGTACTTTTTATAAAACTCTATTAGCATCTCCAGTTGAGGATTTATTGTTCTATAAAAGTATCCCAAACTAGTTCCCCTACTGTTTGTGATGTCACTTCATTCTTTTATAATTTCAACCTCTCTTTGTTTTTACCTATGGTAGGAAATTGTGTAACGTTACCCTAGTTAAGTGGATTTAATTAGATACAAGGAGGTCCATCTTAGAAATTCTGCTTGAAGTTGGTGCAGATTTAACTAATATATTGAGCCAGCTGGAAGAGGTAATAAGCAGTCAGGAAGTGATACAAATAAAATGTTGTCAGAGAGCCAACCTTTCAGTCTGATACCCTTCTTTCTGATGTGGTACAGTGGCAGTTAGCAGAAGGGGGAGAGATCTGATGTGGATAACTCCTAACACTTTCTGGTCCCAACTCTGAAAGATATGTGGTACAATTGTACAAGTATGTTGAGTACAAGTAAAGCATATCACAATTAGATCTTACCTCTGATGCAAGTTGTTACTAGCATTGGTGAATAATGTAATCTTTGACAATAAGTTAATATTTGGGTGCTGCAGCCTTGCATTTTGTTCCTCATTAAAGATTGTTGCTGACCTTTCTTCTCAGCCATAGCTCTATGTGATTTTATGCTTAATTAAATAATGGTAAAACAAATTAATTTGTTTTGTGAGTGCACTGAGAAGACAAGACTACCTGAGCAATAATTTGAGGTCTTGGAGGAGCTAGCTCTTAAAAGTGAACTTCTCTGAATGGAAGGACACTTGTGGAGGATTCTTTGAGTTGGGAAGTGTCTCTGTTACCTTATCTTCTCATATTAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAATGTAAGTACTGTACTATGCAAAACCAAAAGACCACTTATTTTATTGAGCATTCCTTTTTGTTTTATGATGTAATTATGTTATAAATCATCTTTATTATAGAGTTTGTTTTCTGATTGTTTAGCTTTTAGCTTCTTTCGGCACAGTTGGTCGCTCTTAAAGTTAATCCTTTATGTTCACTGCAGTTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTGGTATTCTACTTGTCATACTCTATTGAAGAACTAGATTTGTATGGCATGGCATGATGTTAAGTTTTATGATTATTGCAGCCATAAGAAACTGGCGAATCTCATCCTTTGTAGGGGCGCTGATTTTAGAATCATTTATACCATTAATATATGGTCATGACAATGCGACTTAATAGAGTAGTCCATACTAATGAAACAAGAGAGTATCTCGTAGAATGAGTTGTTTGTTTGGTTTATAGAGAACTGTTCTAATTCACTTCTAGGACTTCCCAGGTCTTGATTCTTCATGCAGTCATTGAGGATGTTGCTGAATTTTGAACATAAGCTGATTAATGTCTTGTTTGTAGGAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTTGTTGC</genome_strand>
        <mrna_strand>CAATACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG........................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311940" ref_strand="+" ref_description="SGN-E311940 [cTOA-16-I11]">
      <seq>ccaccaggggatgactgttgtcctatttgctttggggatttctcaattccttgtaaaaccaactgtggtcactggttttgtgctaattgcatattgcagctgtggtactacagatcaacactgcggcgatgcaagtgtccaatatgcagctgcctcataagtaaattggtaccggaggcatcattacttgttcaacaggaaaaggatgttgtcgagctgcttaaaaagattaggcggtacaatcacatctacattagtggcgcttatgggatttttctcaaggtactagcactgccgcttttaactcggagagttctccgagcactgatggacactctgatggatcctgatcaagttcgattaaactattacttgatgcgcattttcgcattgttcctgagttggatctactggggctgcgaatttcagttcattcctactggactgggaatctggaggttgtttgacatctgtgctattgccacggtagccattttctatatagttggtctataccatagatgggtgcttcgtcgtcgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="29209" stop="32666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29509" g_stop="29590" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29711" g_stop="29907" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="279" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29908" i_stop="31239" i_length="1332">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31240" g_stop="31350" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="390" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31351" i_stop="31866" i_length="516">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31867" g_stop="31918" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="441" r_length="51" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32263" g_stop="32366" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="543" r_length="102" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E311940" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29509" e_stop="29590"/>
          <exon e_start="29711" e_stop="29907"/>
          <exon e_start="31240" e_stop="31350"/>
          <exon e_start="31867" e_stop="31918"/>
          <exon e_start="32263" e_stop="32366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTGGTACACTTCTACAATCCTTTACTTACTAATACTACTACTACTGTTTGTTTTTTCTAGTGAAATAAGTAAGTTCTATGTAGATTATGATTTCCTTGTCCATGGTTTTCCCTTTTTCCGCAGCTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTCGTAAGGCTGTTGTCTTAGAAACTTTATTTCTGCAATGTGATTCTCAGTTTACTGTTTTATTGGGGATGTTAAAGTTATGTATCTTGAGCCTAACTCGAGGTGAGATTGTCCAAGTCATATTAAAGAGACCATCCATCCATTAAAGGGCTGGTTTGGGACTCTTCATGCTCATTTCACGCCCAGTACTTTTTATAAAACTCTATTAGCATCTCCAGTTGAGGATTTATTGTTCTATAAAAGTATCCCAAACTAGTTCCCCTACTGTTTGTGATGTCACTTCATTCTTTTATAATTTCAACCTCTCTTTGTTTTTACCTATGGTAGGAAATTGTGTAACGTTACCCTAGTTAAGTGGATTTAATTAGATACAAGGAGGTCCATCTTAGAAATTCTGCTTGAAGTTGGTGCAGATTTAACTAATATATTGAGCCAGCTGGAAGAGGTAATAAGCAGTCAGGAAGTGATACAAATAAAATGTTGTCAGAGAGCCAACCTTTCAGTCTGATACCCTTCTTTCTGATGTGGTACAGTGGCAGTTAGCAGAAGGGGGAGAGATCTGATGTGGATAACTCCTAACACTTTCTGGTCCCAACTCTGAAAGATATGTGGTACAATTGTACAAGTATGTTGAGTACAAGTAAAGCATATCACAATTAGATCTTACCTCTGATGCAAGTTGTTACTAGCATTGGTGAATAATGTAATCTTTGACAATAAGTTAATATTTGGGTGCTGCAGCCTTGCATTTTGTTCCTCATTAAAGATTGTTGCTGACCTTTCTTCTCAGCCATAGCTCTATGTGATTTTATGCTTAATTAAATAATGGTAAAACAAATTAATTTGTTTTGTGAGTGCACTGAGAAGACAAGACTACCTGAGCAATAATTTGAGGTCTTGGAGGAGCTAGCTCTTAAAAGTGAACTTCTCTGAATGGAAGGACACTTGTGGAGGATTCTTTGAGTTGGGAAGTGTCTCTGTTACCTTATCTTCTCATATTAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAATGTAAGTACTGTACTATGCAAAACCAAAAGACCACTTATTTTATTGAGCATTCCTTTTTGTTTTATGATGTAATTATGTTATAAATCATCTTTATTATAGAGTTTGTTTTCTGATTGTTTAGCTTTTAGCTTCTTTCGGCACAGTTGGTCGCTCTTAAAGTTAATCCTTTATGTTCACTGCAGTTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTGGTATTCTACTTGTCATACTCTATTGAAGAACTAGATTTGTATGGCATGGCATGATGTTAAGTTTTATGATTATTGCAGCCATAAGAAACTGGCGAATCTCATCCTTTGTAGGGGCGCTGATTTTAGAATCATTTATACCATTAATATATGGTCATGACAATGCGACTTAATAGAGTAGTCCATACTAATGAAACAAGAGAGTATCTCGTAGAATGAGTTGTTTGTTTGGTTTATAGAGAACTGTTCTAATTCACTTCTAGGACTTCCCAGGTCTTGATTCTTCATGCAGTCATTGAGGATGTTGCTGAATTTTGAACATAAGCTGATTAATGTCTTGTTTGTAGGAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTG</genome_strand>
        <mrna_strand>CCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG........................................................................................................................CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACT-........................................................................................................................................................................................................................................................................................................................................................--GGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252964" ref_strand="+" ref_description="SGN-E252964 [cLEG-25-O2]">
      <seq>taattcataagagaaaaagagaatgaatatttgttaagagacctagttcttatggaagtataattagaagagcaagtgtcattagtgattttaaaaataaaaattttgtgtggggtgggtggggaggatactttcttacagcttatttggtgccttttgagccctttattgctacagctgtgcctatacaacctaatggaattaaggaagttccgctcatagaaagaattcattgatgaagtgaagcaaattgattgatcttatgattcattttaaaacttcagaatatacgttcctgatatgtctgatttatatgtctctttctccttcccacagaaggtactagcactgccgcttttaactcggagagttctccgagcactgatggacactctgatggatcctgatcaagttcgattaaactattacttgatgcgcattttcgcagtaagttttttaaagagtaaatcgggaatcttccaataacttctggattcttgtttcaacattatgtgggtaatgatgcatagttatgtaagtgctggaggatctagagaagtgtcacatttgagttgccatgcgatctcattgccttttcttatgattatgattactcaataaccttgcgttgtgagagaaaatgatccatattctttggatctactctgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="30604" stop="31875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30904" g_stop="31575" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E252964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30904" e_stop="31575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCT</genome_strand>
        <mrna_strand>TAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E540366" ref_strand="-" ref_description="SGN-E540366 [TUS-60-J16]">
      <seq>agagaaaatgatccatattcttgggatctactctgtgctgggtgaagcatggattctcatgaagtaccctaggacaattttggttaaatttttctgtgaagttgttaatgacatggaaaatccctggaatatcgcctacactggtaatttgttcctgagttggatctactggggctgcgaatttcagttcattcctactggaggactgggaatctggaggttgtttgacatctgtgctattgccacggtagccattttctatatagttggtctataccatagatgggtgcttcgtcgtcgtgtgagacagttggctgttctaccaatacatcctgattgaaagcctatgccttcttacccggaagtctttgctgtgaatatatctcaatgtttgttgcccaaaaaaagagatccccatgcagaatatttgtatgggaggttattttaaaccattttcttctactcattttgttggtagccaagagattgtaattcctcccccaatgataggtcatatatgttagtcttgaactctaattaacaaagtgcttagtgtgcttttggtacatatttgaacttggtaggtcctagagtatttcaccaattagttatccaagattgtcaacgctcgtagtctgagttaaatcttcgagacttcagaagtctacagcatgatatgtggttacctgctcattgagatttggcacattcatggttaaagcatcaagttttgggctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="31237" stop="33100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31537" g_stop="31684" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31685" i_stop="31866" i_length="182">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31867" g_stop="31918" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="200" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32263" g_stop="32806" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="744" r_length="544" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E540366" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540366" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31537" e_stop="31684"/>
          <exon e_start="31867" e_stop="31918"/>
          <exon e_start="32263" e_stop="32806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAATGTAAGTACTGTACTATGCAAAACCAAAAGACCACTTATTTTATTGAGCATTCCTTTTTGTTTTATGATGTAATTATGTTATAAATCATCTTTATTATAGAGTTTGTTTTCTGATTGTTTAGCTTTTAGCTTCTTTCGGCACAGTTGGTCGCTCTTAAAGTTAATCCTTTATGTTCACTGCAGTTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTGGTATTCTACTTGTCATACTCTATTGAAGAACTAGATTTGTATGGCATGGCATGATGTTAAGTTTTATGATTATTGCAGCCATAAGAAACTGGCGAATCTCATCCTTTGTAGGGGCGCTGATTTTAGAATCATTTATACCATTAATATATGGTCATGACAATGCGACTTAATAGAGTAGTCCATACTAATGAAACAAGAGAGTATCTCGTAGAATGAGTTGTTTGTTTGGTTTATAGAGAACTGTTCTAATTCACTTCTAGGACTTCCCAGGTCTTGATTCTTCATGCAGTCATTGAGGATGTTGCTGAATTTTGAACATAAGCTGATTAATGTCTTGTTTGTAGGAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTTGTTGCCCAAAAAAAGAGATCCCCATGCAGAATATTTGTATGGGAGGTTATTTTAAACCATTTTCTTCTACTCATTTTGTTGGTAGCCAAGAGATTGTAATTCCTCCCCCAATGATAGGTCATATATGTTAGTCTTGAACTCTAATTAACAAAGTGCTTAGTGTGCTTTTGGTACATATTTGAACTTGGTAGGTCCTAGAGTATTTCACCAATTAGTTATCCAAGATTGTCAACGCTCGTAGTCTGAGTTAAATCTTCGAGACTTCAGAAGTCTACAGCATGATATGTGGTTACCTGCTCATTGAGATTTGGCACATTCATGGTTAAAGCATCAAGTTTTGGGCTATTCTTA</genome_strand>
        <mrna_strand>AGAGAAAATGATCCATATTCTTGGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAAT......................................................................................................................................................................................TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG........................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTTGTTGCCCAAAAAAAGAGATCCCCATGCAGAATATTTGTATGGGAGGTTATTTTAAACCATTTTCTTCTACTCATTTTGTTGGTAGCCAAGAGATTGTAATTCCTCCCCCAATGATAGGTCATATATGTTAGTCTTGAACTCTAATTAACAAAGTGCTTAGTGTGCTTTTGGTACATATTTGAACTTGGTAGGTCCTAGAGTATTTCACCAATTAGTTATCCAAGATTGTCAACGCTCGTAGTCTGAGTTAAATCTTCGAGACTTCAGAAGTCTACAGCATGATATGTGGTTACCTGCTCATTGAGATTTGGCACATTCATGGTTAAAGCATCAAGTTTTGGGCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287397" ref_strand="+" ref_description="SGN-E287397 [cLES-15-K4]">
      <seq>ttttttagcccaaaacttgatgctttaaccatgaatgtgccaaatctcaatgagcaggtaaccacatatcatgctgtagacttctgaagtctcgaagatttaactcagactacgagcgttgacaatcttggataactaattggtgaaatactctaggacctaccaagttcaaatatgtaccaaaagcacactaagcactttgttaattagagttcaagactaacatatatgacctatcattgggggaggaattacaatctcttggctaccaacaaaatgagtagaagaaaatggtttaaaataacctcccatacaaatattctgcatggggatctctttttttgggcaacaaacattgagatatattcacagcaaagacttccgggtaagaaggcataggctttcaatcaggatgtattggtagaacagccaactgtctcacacgacgacgaagcacccatctatggtatagaccaactatatagaaaatggctaccgtggcaatagcacagatgtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33100" stop="31985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32805" g_stop="32285" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E287397" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32805" e_stop="32285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATAGCCCAAAACTTGATGCTTTAACCATGAATGTGCCAAATCTCAATGAGCAGGTAACCACATATCATGCTGTAGACTTCTGAAGTCTCGAAGATTTAACTCAGACTACGAGCGTTGACAATCTTGGATAACTAATTGGTGAAATACTCTAGGACCTACCAAGTTCAAATATGTACCAAAAGCACACTAAGCACTTTGTTAATTAGAGTTCAAGACTAACATATATGACCTATCATTGGGGGAGGAATTACAATCTCTTGGCTACCAACAAAATGAGTAGAAGAAAATGGTTTAAAATAACCTCCCATACAAATATTCTGCATGGGGATCTCTTTTTTTGGGCAACAAACATTGAGATATATTCACAGCAAAGACTTCCGGGTAAGAAGGCATAGGCTTTCAATCAGGATGTATTGGTAGAACAGCCAACTGTCTCACACGACGACGAAGCACCCATCTATGGTATAGACCAACTATATAGAAAATGGCTACCGTGGCAATAGCACAGATGTCAAAC</genome_strand>
        <mrna_strand>TTTTTTAGCCCAAAACTTGATGCTTTAACCATGAATGTGCCAAATCTCAATGAGCAGGTAACCACATATCATGCTGTAGACTTCTGAAGTCTCGAAGATTTAACTCAGACTACGAGCGTTGACAATCTTGGATAACTAATTGGTGAAATACTCTAGGACCTACCAAGTTCAAATATGTACCAAAAGCACACTAAGCACTTTGTTAATTAGAGTTCAAGACTAACATATATGACCTATCATTGGGGGAGGAATTACAATCTCTTGGCTACCAACAAAATGAGTAGAAGAAAATGGTTTAAAATAACCTCCCATACAAATATTCTGCATGGGGATCTCTTTTTTTGGGCAACAAACATTGAGATATATTCACAGCAAAGACTTCCGGGTAAGAAGGCATAGGCTTTCAATCAGGATGTATTGGTAGAACAGCCAACTGTCTCACACGACGACGAAGCACCCATCTATGGTATAGACCAACTATATAGAAAATGGCTACCGTGGCAATAGCACAGATGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730564" ref_strand="+" ref_description="SGN-E730564 [LA24CA09]">
      <seq>catttcttcctccatagtattcctttacgaaatcgtcgtcaaaaccctaaccctatcccaccttctccagctatgctttctgacttagcttccgattccggtgacggacgacaggaggaaaccgcttcttcctcctccgctgccgtgatgaattcggacgaggaagaggaggaagaagatatgggatataagtcgcctgatgatgaggtgagtacgacgttgttttcaggaacggagatagaggatgagctggaaggtaatcgtgaaccgacagccgaggatgaggaccttcgggagttggatggtgcatcttctaagagccttgtggttgttgagacagagaatgcgtttttgaggacggagaagcctcctactgatgattgttgtccaatctgctttggaaattttgtcgttccttgccgaggtccttgtggccactggtactgcggaggttgtattttgcagtattggaactatggtgccgcacttcagccttgtaactgccccatgtgttcgaggaagcttactgatttgacaccagaggcatcattgtatagtcagcaggatgcagaagtaattgaggttttgaaaaaagttcgaaagtataatcgcctttttataggtggcacttatggcctcatgctgaaggtgcttgggttgcccttttacataaagagagtgttcaatgaaatgatgaatcctgacaggcctggtgctcatttgaacaaattgcgtatttttgctataatttcttgcagatgttcctgggactcctttacacattcagcccctttgattttctcagaataggccgtcaaaatgtaattgatgtatttgattattctgccattgcactatcctcagcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33598" stop="37243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33897" g_stop="34344" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35225" g_stop="35421" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="645" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35422" i_stop="36137" i_length="716">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36138" g_stop="36236" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="744" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36237" i_stop="36501" i_length="265">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36502" g_stop="36567" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="810" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36568" i_stop="36885" i_length="318">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36886" g_stop="36943" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="868" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E730564" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33897" e_stop="34344"/>
          <exon e_start="35225" e_stop="35421"/>
          <exon e_start="36138" e_stop="36236"/>
          <exon e_start="36502" e_stop="36567"/>
          <exon e_start="36886" e_stop="36943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTTCCTCCATAGTATTCCTTTACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCGGTAAAACATTTAGCTTATCTTAATATCTCTGGTTCATCTCCATGTTTATTGTGATTTTTATTATTGTAATAGCTCAACTGCTCAAGGAGTTTTCCATGAAATTGATTATGTGCTGCTATTTTTGGAAGGAATTTGGGGCTATATGGAGCAGATGATGTTCTTTGCTCTTCTCTGAGATTTCGTAACTACTAGGAGGTGCTAGGGGATAGTGATCTTTCTCGTACTACATTTAGATTTTGCAACTCGCCTTGGAAATTGACGGTGGAGAATGTGGAAGCACCACATGAAATTATATATATAGTTGGATTAATTTGTTAAAAAGGAAGAAAATATAGTTGGAAAACCAGCTCAATACCATAATTTTGTAGGTTCATTAGGAGGCTTTAAACATGTGCAGCTCATGTCGAATCATTTTTACTCTATTGCTCTTACCTTTTTCATTAGTTTGGCTGAAATCTGAAGTACGTTAGGGTTAAATCCACTATCTTATTTGGAATCCCTTTTTCTGTCAATACCTAGGAGAAGATAATGATAATGTCTTGCAAGTGTAGTTGGAAATTATCCTTCCTATGGCAATTTATTGATTAGGACAATATTTAAATCTCCTTGAGAATTGTTGAAATCTGTTATCTCATAATTTTGCTAATCCTGGTTCCGTATCCTCTTGGAGAGTGAGGTATCAAGCATCTCCTGTGCTCTTATATATTTGACGTTAATTGTTTAAATGTTCATCGTGAAGAAGTAATTGCATTCTCAAGAAAAGCCACGTGTAACGTAGTCGACCATAACAGTTATTTATCTTGAAGTTGTTCCTGCCAAGCTTTGCCTCAATACTTTTTTCTTTCAACACATTCTTACAATTTGGTTTCTATGTGTGCAGGAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTGGTGCGTTAGACTTGTATGTTGTTCTATCATATGTTAGATTGCGTAGATGGGGTTATCCTTATATTTTAAGCACAGATTGTACCATCTGTTTGGACCCTGTGTCTCCTATGTTTTTGGTGGGGTCTATTAGTGCATCGTTGGTTCTTTCAAGCAAGCAGAATATCGTCTTGTTTAATCCATTAATTTTGAGCTCAAGATCATGTGCTTTGAAAGAAAAGGTCATTAATATTCTCGAGATAAAGTCTTGAATATTTAAGCTCCATGAGTTCAGCAAGAGATTATACAAATCATGAAATCAGACAGTGTTTATCGTATGAATTGAATTGATCTTGTTTGTGCTAACTGTTTACGGGTATTCCTCTTGCCTGCCTGCCTATGCTTTGTGAAACAAAGCTAGTTGAACCTAACAAGTATAATGCATACCATGTATCTTATATTATGTGAGTTTGTTGCTTCAGCTATCCTCTTGCCTGTCTATGATTTGTAAAAAATAAAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATTGCTGGGAGAGCTCTTCTTTCCCCGCCCTTCTGCATGCTGGAGTGCTATTGGGTATTTTTGTTGGTGAATAACTCAAGGTGCATTTCTCTTTGCATTGACCTATTTTTTTATTGCATCTCACTGCAGGCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTT</genome_strand>
        <mrna_strand>CATTTCTTCCTCCATAGTATTCCTTTACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT.........................................................................................................................................................................................................................................................................ATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAG..............................................................................................................................................................................................................................................................................................................................GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730686" ref_strand="+" ref_description="SGN-E730686 [LA24DE03]">
      <seq>cgttcttcctccatagtattcctttacgaaatcgtcgtcaaaaccctaaccctatcccaccttctccagctatgctttctgacttagcttccgattccggtgacggacgacaggaggaaaccgcttcttcctcctccgctgccgtgatgaattcggacgaggaagaggaggaagaagatatgggatataagtcgcctgatgatgaggtgagtacgacgttgttttcaggaacggagatagaggatgagctggaaggtaatcgtgaaccgacagccgaggatgaggaccttcgggagttggatggtgcatcttctaagagccttgtggttgttgagacagagaatgcgtttttgaggacggagaagcctcctactgatgattgttgtccaatctgctttggaaattttgtcgttccttgccgaggtccttgtggccactggtactgcggaggttgtattttgcagtattggaactatggtgccgcacttcagccttgtaactgccccatgtgttcgaggaagcttactgatttgacaccagaggcatcattgtatagtcagcaggatgcagaagtaattgaggttttgaaaaaagttcgaaagtataatcgcctttttataggtggcacttatggcctcatgctgaaggtgcttgggttgcccttttacataaagagagtgttcaatgaaatgatgaatcctgacaggcctggtgctcatttgaacaaattgcgtatttttgctataatttcttgcagatgttcctgggactcctttacacattcagcccctttgattttctcagaataggcccgtcaaatgtaattgatgtatttgattattctgccattgcactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33599" stop="37234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33898" g_stop="34344" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35225" g_stop="35421" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="644" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35422" i_stop="36137" i_length="716">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36138" g_stop="36236" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="743" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36237" i_stop="36501" i_length="265">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36502" g_stop="36567" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="809" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36568" i_stop="36885" i_length="318">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36886" g_stop="36934" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="858" r_length="49" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E730686" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33898" e_stop="34344"/>
          <exon e_start="35225" e_stop="35421"/>
          <exon e_start="36138" e_stop="36236"/>
          <exon e_start="36502" e_stop="36567"/>
          <exon e_start="36886" e_stop="36934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTCCTCCATAGTATTCCTTTACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCGGTAAAACATTTAGCTTATCTTAATATCTCTGGTTCATCTCCATGTTTATTGTGATTTTTATTATTGTAATAGCTCAACTGCTCAAGGAGTTTTCCATGAAATTGATTATGTGCTGCTATTTTTGGAAGGAATTTGGGGCTATATGGAGCAGATGATGTTCTTTGCTCTTCTCTGAGATTTCGTAACTACTAGGAGGTGCTAGGGGATAGTGATCTTTCTCGTACTACATTTAGATTTTGCAACTCGCCTTGGAAATTGACGGTGGAGAATGTGGAAGCACCACATGAAATTATATATATAGTTGGATTAATTTGTTAAAAAGGAAGAAAATATAGTTGGAAAACCAGCTCAATACCATAATTTTGTAGGTTCATTAGGAGGCTTTAAACATGTGCAGCTCATGTCGAATCATTTTTACTCTATTGCTCTTACCTTTTTCATTAGTTTGGCTGAAATCTGAAGTACGTTAGGGTTAAATCCACTATCTTATTTGGAATCCCTTTTTCTGTCAATACCTAGGAGAAGATAATGATAATGTCTTGCAAGTGTAGTTGGAAATTATCCTTCCTATGGCAATTTATTGATTAGGACAATATTTAAATCTCCTTGAGAATTGTTGAAATCTGTTATCTCATAATTTTGCTAATCCTGGTTCCGTATCCTCTTGGAGAGTGAGGTATCAAGCATCTCCTGTGCTCTTATATATTTGACGTTAATTGTTTAAATGTTCATCGTGAAGAAGTAATTGCATTCTCAAGAAAAGCCACGTGTAACGTAGTCGACCATAACAGTTATTTATCTTGAAGTTGTTCCTGCCAAGCTTTGCCTCAATACTTTTTTCTTTCAACACATTCTTACAATTTGGTTTCTATGTGTGCAGGAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTGGTGCGTTAGACTTGTATGTTGTTCTATCATATGTTAGATTGCGTAGATGGGGTTATCCTTATATTTTAAGCACAGATTGTACCATCTGTTTGGACCCTGTGTCTCCTATGTTTTTGGTGGGGTCTATTAGTGCATCGTTGGTTCTTTCAAGCAAGCAGAATATCGTCTTGTTTAATCCATTAATTTTGAGCTCAAGATCATGTGCTTTGAAAGAAAAGGTCATTAATATTCTCGAGATAAAGTCTTGAATATTTAAGCTCCATGAGTTCAGCAAGAGATTATACAAATCATGAAATCAGACAGTGTTTATCGTATGAATTGAATTGATCTTGTTTGTGCTAACTGTTTACGGGTATTCCTCTTGCCTGCCTGCCTATGCTTTGTGAAACAAAGCTAGTTGAACCTAACAAGTATAATGCATACCATGTATCTTATATTATGTGAGTTTGTTGCTTCAGCTATCCTCTTGCCTGTCTATGATTTGTAAAAAATAAAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATTGCTGGGAGAGCTCTTCTTTCCCCGCCCTTCTGCATGCTGGAGTGCTATTGGGTATTTTTGTTGGTGAATAACTCAAGGTGCATTTCTCTTTGCATTGACCTATTTTTTTATTGCATCTCACTGCAGGCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATC</genome_strand>
        <mrna_strand>CGTTCTTCCTCCATAGTATTCCTTTACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT.........................................................................................................................................................................................................................................................................ATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAG..............................................................................................................................................................................................................................................................................................................................GCCCGTCAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549687" ref_strand="+" ref_description="SGN-E549687 [TUS-6-P8]">
      <seq>acgaaatcgtcgtcaaaaccctaaccctatcccaccttctccagctatgctttctgacttagcttccgattccggtgacggacgacaggaggaaaccgcttcttcctcctccgctgccgtgatgaattcggacgaggaagaggaggaagaagatatgggatataagtcgcctgatgatgaggtgagtacgacgttgttttcaggaacggagatagaggatgagctggaaggtaatcgtgaaccgacagccgaggatgaggaccttcgggagttggatggtgcatcttctaagagccttgtggttgttgagacagagaatgcgtttttgaggacggagaagcctcctactgatgattgttgtccaatctgctttggaaattttgtcgttccttgccgaggtccttgtggccactggtactgcggaggttgtattttgcagtattggaactatggtgccgcacttcagccttgtaactgccccatgtgttcgaggaagcttactgatttgacaccagaggcatcattgtatagtcagcaggatgcagaagtaattgaggttttgaaaaaagttcgaaagtataatcgcctttttataggtggcacttatggcctcatgctgaaggtgcttgggttgcccttttacataaagagagtgttcnatgaaatgatgaatcctgacaggcctggtgctcatttgacaaattgcgtattttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33623" stop="36537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33923" g_stop="34344" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35225" g_stop="35421" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="619" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35422" i_stop="36137" i_length="716">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36138" g_stop="36236" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="716" r_length="97" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E549687" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33923" e_stop="34344"/>
          <exon e_start="35225" e_stop="35421"/>
          <exon e_start="36138" e_stop="36236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCGGTAAAACATTTAGCTTATCTTAATATCTCTGGTTCATCTCCATGTTTATTGTGATTTTTATTATTGTAATAGCTCAACTGCTCAAGGAGTTTTCCATGAAATTGATTATGTGCTGCTATTTTTGGAAGGAATTTGGGGCTATATGGAGCAGATGATGTTCTTTGCTCTTCTCTGAGATTTCGTAACTACTAGGAGGTGCTAGGGGATAGTGATCTTTCTCGTACTACATTTAGATTTTGCAACTCGCCTTGGAAATTGACGGTGGAGAATGTGGAAGCACCACATGAAATTATATATATAGTTGGATTAATTTGTTAAAAAGGAAGAAAATATAGTTGGAAAACCAGCTCAATACCATAATTTTGTAGGTTCATTAGGAGGCTTTAAACATGTGCAGCTCATGTCGAATCATTTTTACTCTATTGCTCTTACCTTTTTCATTAGTTTGGCTGAAATCTGAAGTACGTTAGGGTTAAATCCACTATCTTATTTGGAATCCCTTTTTCTGTCAATACCTAGGAGAAGATAATGATAATGTCTTGCAAGTGTAGTTGGAAATTATCCTTCCTATGGCAATTTATTGATTAGGACAATATTTAAATCTCCTTGAGAATTGTTGAAATCTGTTATCTCATAATTTTGCTAATCCTGGTTCCGTATCCTCTTGGAGAGTGAGGTATCAAGCATCTCCTGTGCTCTTATATATTTGACGTTAATTGTTTAAATGTTCATCGTGAAGAAGTAATTGCATTCTCAAGAAAAGCCACGTGTAACGTAGTCGACCATAACAGTTATTTATCTTGAAGTTGTTCCTGCCAAGCTTTGCCTCAATACTTTTTTCTTTCAACACATTCTTACAATTTGGTTTCTATGTGTGCAGGAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTGGTGCGTTAGACTTGTATGTTGTTCTATCATATGTTAGATTGCGTAGATGGGGTTATCCTTATATTTTAAGCACAGATTGTACCATCTGTTTGGACCCTGTGTCTCCTATGTTTTTGGTGGGGTCTATTAGTGCATCGTTGGTTCTTTCAAGCAAGCAGAATATCGTCTTGTTTAATCCATTAATTTTGAGCTCAAGATCATGTGCTTTGAAAGAAAAGGTCATTAATATTCTCGAGATAAAGTCTTGAATATTTAAGCTCCATGAGTTCAGCAAGAGATTATACAAATCATGAAATCAGACAGTGTTTATCGTATGAATTGAATTGATCTTGTTTGTGCTAACTGTTTACGGGTATTCCTCTTGCCTGCCTGCCTATGCTTTGTGAAACAAAGCTAGTTGAACCTAACAAGTATAATGCATACCATGTATCTTATATTATGTGAGTTTGTTGCTTCAGCTATCCTCTTGCCTGTCTATGATTTGTAAAAAATAAAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT</genome_strand>
        <mrna_strand>ACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCNATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTG-ACAAATTGCGTA-TTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391759" ref_strand="+" ref_description="SGN-E391759 [TUS-24-I14]">
      <seq>acgaaatcgtcgtcaaaaccctaaccctatcccaccttctccagctatgctttctgacttagcttccgattccggtgacggacgacaggaggaaaccgcttcttcctcctccgctgccgtgatgaattcggacgaggaagaggaggaagaagatatgggatataagtcgcctgatgatgaggtgagtacgacgttgttttcaggaacggagatagaggatgagctggaaggtaatcgtgaaccgacagccgaggatgaggaccttcgggagttggatggtgcatcttctaagagccttgtggttgttgagacagagaatgcgtttttgaggacggagaagcctcctactgatgattgttgtccaatctgctttggaaattttgtcgttccttgccgaggtccttgtggccactggtactgcggaggttgtattttgcagtattggaactatggtgccgcacttcagccttgtaactgccccatgtgttcgaggaagcttactgatttgacaccaaaggcatcattgtaaagttcggcaggatgcagaagtaattgaaggtttgaaaaaagttcaaaagtataatcgccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33623" stop="35694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33923" g_stop="34344" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35225" g_stop="35394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="593" r_length="171" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E391759" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33923" e_stop="34344"/>
          <exon e_start="35225" e_stop="35394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCGGTAAAACATTTAGCTTATCTTAATATCTCTGGTTCATCTCCATGTTTATTGTGATTTTTATTATTGTAATAGCTCAACTGCTCAAGGAGTTTTCCATGAAATTGATTATGTGCTGCTATTTTTGGAAGGAATTTGGGGCTATATGGAGCAGATGATGTTCTTTGCTCTTCTCTGAGATTTCGTAACTACTAGGAGGTGCTAGGGGATAGTGATCTTTCTCGTACTACATTTAGATTTTGCAACTCGCCTTGGAAATTGACGGTGGAGAATGTGGAAGCACCACATGAAATTATATATATAGTTGGATTAATTTGTTAAAAAGGAAGAAAATATAGTTGGAAAACCAGCTCAATACCATAATTTTGTAGGTTCATTAGGAGGCTTTAAACATGTGCAGCTCATGTCGAATCATTTTTACTCTATTGCTCTTACCTTTTTCATTAGTTTGGCTGAAATCTGAAGTACGTTAGGGTTAAATCCACTATCTTATTTGGAATCCCTTTTTCTGTCAATACCTAGGAGAAGATAATGATAATGTCTTGCAAGTGTAGTTGGAAATTATCCTTCCTATGGCAATTTATTGATTAGGACAATATTTAAATCTCCTTGAGAATTGTTGAAATCTGTTATCTCATAATTTTGCTAATCCTGGTTCCGTATCCTCTTGGAGAGTGAGGTATCAAGCATCTCCTGTGCTCTTATATATTTGACGTTAATTGTTTAAATGTTCATCGTGAAGAAGTAATTGCATTCTCAAGAAAAGCCACGTGTAACGTAGTCGACCATAACAGTTATTTATCTTGAAGTTGTTCCTGCCAAGCTTTGCCTCAATACTTTTTTCTTTCAACACATTCTTACAATTTGGTTTCTATGTGTGCAGGAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAG-TCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTT</genome_strand>
        <mrna_strand>ACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAAAGGCATCATTGTAAAGTTCGGCAGGATGCAGAAGTAATTGAAGGTTTGAAAAAAGTTCAAAAGTATAATCGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247599" ref_strand="+" ref_description="SGN-E247599 [cLEF-42-N5]">
      <seq>cgaaatcgtcgtcaaaaccctaaccctatcccaccttctccagctatgctttctgacttagcttccgattccggtgacggacgacaggaggaaaccgcttcttcctcctccgctgccgtgatgaattcggacgaggaagaggaggaagaagatatgggatataagtcgcctgatgatgaggtgagtacgacgttgttttcaggaacggagatagaggatgagctggaaggtaatcgtgaaccgacagccgaggatgaggaccttcgggagttggatggtgcatcttctaagagccttgtggttgttgagacagagaatgcgtttttgaggacggagaagcctcctactgatgattgttgtccaatctgctttggaaattttgtcgttccttgccgaggtccttgtggccactggtactgcggaggttgtattttgcagtattggaactatggtgccgcacttcagccttgtaactgccccatgtgttcgaggaagcttactgatttgacaccagaggcatcattgtatagtcagcaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33624" stop="35644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33924" g_stop="34344" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35225" g_stop="35344" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="541" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E247599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33924" e_stop="34344"/>
          <exon e_start="35225" e_stop="35344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCGGTAAAACATTTAGCTTATCTTAATATCTCTGGTTCATCTCCATGTTTATTGTGATTTTTATTATTGTAATAGCTCAACTGCTCAAGGAGTTTTCCATGAAATTGATTATGTGCTGCTATTTTTGGAAGGAATTTGGGGCTATATGGAGCAGATGATGTTCTTTGCTCTTCTCTGAGATTTCGTAACTACTAGGAGGTGCTAGGGGATAGTGATCTTTCTCGTACTACATTTAGATTTTGCAACTCGCCTTGGAAATTGACGGTGGAGAATGTGGAAGCACCACATGAAATTATATATATAGTTGGATTAATTTGTTAAAAAGGAAGAAAATATAGTTGGAAAACCAGCTCAATACCATAATTTTGTAGGTTCATTAGGAGGCTTTAAACATGTGCAGCTCATGTCGAATCATTTTTACTCTATTGCTCTTACCTTTTTCATTAGTTTGGCTGAAATCTGAAGTACGTTAGGGTTAAATCCACTATCTTATTTGGAATCCCTTTTTCTGTCAATACCTAGGAGAAGATAATGATAATGTCTTGCAAGTGTAGTTGGAAATTATCCTTCCTATGGCAATTTATTGATTAGGACAATATTTAAATCTCCTTGAGAATTGTTGAAATCTGTTATCTCATAATTTTGCTAATCCTGGTTCCGTATCCTCTTGGAGAGTGAGGTATCAAGCATCTCCTGTGCTCTTATATATTTGACGTTAATTGTTTAAATGTTCATCGTGAAGAAGTAATTGCATTCTCAAGAAAAGCCACGTGTAACGTAGTCGACCATAACAGTTATTTATCTTGAAGTTGTTCCTGCCAAGCTTTGCCTCAATACTTTTTTCTTTCAACACATTCTTACAATTTGGTTTCTATGTGTGCAGGAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATG</genome_strand>
        <mrna_strand>CGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697559" ref_strand="+" ref_description="SGN-E697559 [FA03BE11]">
      <seq>gcctgatgatgaggtgagtacgacgttgttttcaggaacggagatagaggatgagctggaaggtaatcgtgaaccgacagccgaggatgaggaccttcgggagttggatggtgcatcttctaagagccttgtggttgttgagacagagaatgcgtttttgaggacggagaagcctcctactgatgattgttgtccaatctgctttggaaattttgtcgttccttgccgaggtccttgtggccactggtactgcggaggttgtattttgcagtattggaactatggtgccgcacttcagccttgtaactgccccatgtgttcgaggaagcttactgatttgacaccagaggcatcattgtatagtcagcaggatgcagaagtaattgaggttttgaaaaaagttcgaaagtataatcgcctttttataggtggcacttatggcctcatgctgaaggtgcttgggttgcccttttacataaagagagtgttcaatgaaatgatgaatcctgacaggcctggtgctcatttgaacaaattgcgtatttttgctgccgtcaaaatgtaattgatgtatttgattattctgccattgcactatcctcagtgttatatttggttgggctgtatcttcgacgaaggcgttttcgccatgtcagggagatggctgaggctgattttgctgctcattgacagctgccaactggtgaagcagacatttgtcaactcgttgtggagcttgacgattctggatttctaaagatcgtcctctgcttttgtggttgtgcgcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="33791" stop="37427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34091" g_stop="34344" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35225" g_stop="35421" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="451" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35422" i_stop="36137" i_length="716">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36138" g_stop="36236" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="550" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36237" i_stop="36885" i_length="649">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36886" g_stop="37127" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="792" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E697559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34091" e_stop="34344"/>
          <exon e_start="35225" e_stop="35421"/>
          <exon e_start="36138" e_stop="36236"/>
          <exon e_start="36886" e_stop="37127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCGGTAAAACATTTAGCTTATCTTAATATCTCTGGTTCATCTCCATGTTTATTGTGATTTTTATTATTGTAATAGCTCAACTGCTCAAGGAGTTTTCCATGAAATTGATTATGTGCTGCTATTTTTGGAAGGAATTTGGGGCTATATGGAGCAGATGATGTTCTTTGCTCTTCTCTGAGATTTCGTAACTACTAGGAGGTGCTAGGGGATAGTGATCTTTCTCGTACTACATTTAGATTTTGCAACTCGCCTTGGAAATTGACGGTGGAGAATGTGGAAGCACCACATGAAATTATATATATAGTTGGATTAATTTGTTAAAAAGGAAGAAAATATAGTTGGAAAACCAGCTCAATACCATAATTTTGTAGGTTCATTAGGAGGCTTTAAACATGTGCAGCTCATGTCGAATCATTTTTACTCTATTGCTCTTACCTTTTTCATTAGTTTGGCTGAAATCTGAAGTACGTTAGGGTTAAATCCACTATCTTATTTGGAATCCCTTTTTCTGTCAATACCTAGGAGAAGATAATGATAATGTCTTGCAAGTGTAGTTGGAAATTATCCTTCCTATGGCAATTTATTGATTAGGACAATATTTAAATCTCCTTGAGAATTGTTGAAATCTGTTATCTCATAATTTTGCTAATCCTGGTTCCGTATCCTCTTGGAGAGTGAGGTATCAAGCATCTCCTGTGCTCTTATATATTTGACGTTAATTGTTTAAATGTTCATCGTGAAGAAGTAATTGCATTCTCAAGAAAAGCCACGTGTAACGTAGTCGACCATAACAGTTATTTATCTTGAAGTTGTTCCTGCCAAGCTTTGCCTCAATACTTTTTTCTTTCAACACATTCTTACAATTTGGTTTCTATGTGTGCAGGAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTGGTGCGTTAGACTTGTATGTTGTTCTATCATATGTTAGATTGCGTAGATGGGGTTATCCTTATATTTTAAGCACAGATTGTACCATCTGTTTGGACCCTGTGTCTCCTATGTTTTTGGTGGGGTCTATTAGTGCATCGTTGGTTCTTTCAAGCAAGCAGAATATCGTCTTGTTTAATCCATTAATTTTGAGCTCAAGATCATGTGCTTTGAAAGAAAAGGTCATTAATATTCTCGAGATAAAGTCTTGAATATTTAAGCTCCATGAGTTCAGCAAGAGATTATACAAATCATGAAATCAGACAGTGTTTATCGTATGAATTGAATTGATCTTGTTTGTGCTAACTGTTTACGGGTATTCCTCTTGCCTGCCTGCCTATGCTTTGTGAAACAAAGCTAGTTGAACCTAACAAGTATAATGCATACCATGTATCTTATATTATGTGAGTTTGTTGCTTCAGCTATCCTCTTGCCTGTCTATGATTTGTAAAAAATAAAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATTGCTGGGAGAGCTCTTCTTTCCCCGCCCTTCTGCATGCTGGAGTGCTATTGGGTATTTTTGTTGGTGAATAACTCAAGGTGCATTTCTCTTTGCATTGACCTATTTTTTTATTGCATCTCACTGCAGGCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTG</genome_strand>
        <mrna_strand>GCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705155" ref_strand="+" ref_description="SGN-E705155 [FA26BC10]">
      <seq>tataaagttagttgcacctaatttttacatcaacctaataaatacatgtaatacataacgtgtgtctttctttgaattgttctctcttgtgaataatagcagtgtaatattttcagtggtatctaatccttcacattttgcagacacaataactggtttaccattaagtataagcagagcaccacattatttttattttagcccttctctttctattttctgcagaaggtgcttgggttgcccttttacataaagagagtgttcaatgaaatgatgaatcctgacaggcctggtgctcatttgaacaaattgcgtatttttgctgtaagttcgtctgacagcttaatgcaatgactgcaacattgctactttaatcagctatctgtagtatttggttttatagctctacaacctcgatattctccctcaattagttccaaagtgaaaaacaaattctcattatttatcagttttctggccttaaattgttgttaaggtttctttctgatttgctatcttatctaatttgccattctattctttgttatattttagtaacatcatttcttgaacttatccgctgaagcagataatttcttgcagatgttcctgggactcctttacacattcagcccctttgattttctcagaataggtacacacatctgctagttgaacttgatgggtgtagaatttgaagaaaaataattggccaatttttcttgtagtattggtctattaaaacaagtatatgaactatgaacctctatgttgcattacagggacttaaatagtaactgagaaaattcattttttgtctgtcttcactattagacctctatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="35613" stop="37059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35913" g_stop="36759" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E705155" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35913" e_stop="36759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATT</genome_strand>
        <mrna_strand>TATAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392007" ref_strand="+" ref_description="SGN-E392007 [TUS-24-I14](-)">
      <seq>ttgggttgcccttttacataaagagagtgttcaatgaaatgatgaatcctgacaggcctggtgctcatttgaacaaattgcgtatttttgctgccgtcaaaatgtaattgatgtatttgattattctgccattgcactatcctcagtgttatatttggttgggctgtatcttcgacgaaggcgttttcgccatgtcagggagatggctgaggctgattttgctgctcattgacagctgccaactggtgaagcagacatttgtcaactcgttgtggagcttgacgattctggatttctaaagatcgtcctctgcttttgtggttgtgcgcttttgcagagtttgacatggtctttccctatgatgcagttctcttacatttacctgccagtgtgtacagataggatgtagtgttatgatgtatatacatactcatttagttgatctctcttccaccccatcatatattcttgaatctgaatggaatatagtcaatagaaaactaccggcttgtgtactaataatgaactaataatgagtcttatcaccctacgttgaacaagacctgttctacaggctcttgctattatgttctgtccttgtttaagagttccgtatattttaccagcttcttttttctttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="35845" stop="37736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36145" g_stop="36236" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36237" i_stop="36885" i_length="649">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36886" g_stop="37436" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="643" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E392007" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36145" e_stop="36236"/>
          <exon e_start="36886" e_stop="37436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATTGCTGGGAGAGCTCTTCTTTCCCCGCCCTTCTGCATGCTGGAGTGCTATTGGGTATTTTTGTTGGTGAATAACTCAAGGTGCATTTCTCTTTGCATTGACCTATTTTTTTATTGCATCTCACTGCAGGCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTGCAGAGTTTGACATGGTCTTTCCCTATGATGCAGTTCTCTTACATTTACCTGCCAGTGTGTACAGATAGGATGTAGTGTTATGATGTATATACATACTCATTTAGTTGATCTCTCTTCCACCCCATCATATATTCTTGAATCTGAATGGAATATAGTCAATAGAAAACTACCGGCTTGTGTACTAATAATGAACTAATAATGAGTCTTATCACCCTACGTTGAACAAGACCTGTTCTACAGGCTCTTGCTATTATGTTCTGTCCTTGTTTAAGAGTTCCGTATATTTTACCAGCTTCTTTTTTCTTTATA</genome_strand>
        <mrna_strand>TTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTGCAGAGTTTGACATGGTCTTTCCCTATGATGCAGTTCTCTTACATTTACCTGCCAGTGTGTACAGATAGGATGTAGTGTTATGATGTATATACATACTCATTTAGTTGATCTCTCTTCCACCCCATCATATATTCTTGAATCTGAATGGAATATAGTCAATAGAAAACTACCGGCTTGTGTACTAATAATGAACTAATAATGAGTCTTATCACCCTACGTTGAACAAGACCTGTTCTACAGGCTCTTGCTATTATGTTCTGTCCTTGTTTAAGAGTTCCGTATATTTTACCAGCTTCTTTTTTCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549624" ref_strand="+" ref_description="SGN-E549624 [TUS-6-P8](-)">
      <seq>ctgccgtcaaaatgtaattgatgtatttgattattctgccattgcactatcctcagtgttatatttggttgggctgtatcttcgacgaaggcgttttcgccatgtcagggagatggctgaggctgattttgctgctcattgacagctgccaactggtgaagcagacatttgtcaactcgttgtggagcttgacgattctggatttctaaagatcgtcctctgcttttgtggttgtgcgcttttgcagagtttgacatggtctttccctatgatgcagttctcttacatttacctgccagtgtgtacagataggatgtagtgttatgatgtatatacatactcatttagttgatctctcttccaccccatcatatattgttgaatgtgaatggaatatagtcaatcgaaagctgggggcttgtgtactaataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="36586" stop="37618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36886" g_stop="37318" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="435" r_length="433" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E549624" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36886" e_stop="37318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTGCAGAGTTTGACATGGTCTTTCCCTATGATGCAGTTCTCTTACATTTACCTGCCAGTGTGTACAGATAGGATGTAGTGTTATGATGTATATACATACTCATTTAGTTGATCTCTCTTCCACCCCATCATATATTCTTGAATCTGAATGGAATATAGTCAATAGAAAACTACCGGCTTGTGTACTAATAATGA</genome_strand>
        <mrna_strand>GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTGCAGAGTTTGACATGGTCTTTCCCTATGATGCAGTTCTCTTACATTTACCTGCCAGTGTGTACAGATAGGATGTAGTGTTATGATGTATATACATACTCATTTAGTTGATCTCTCTTCCACCCCATCATATATTGTTGAATGTGAATGGAATATAGTCAATCGAAAGCTGGGGGCTTGTGTACTAATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245000" ref_strand="-" ref_description="SGN-E245000 [cLEF-2-D20]">
      <seq>tgagctccttgactccaacaatgatgctggtattcaagagatcatcttgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttttaattgacgagattgtggatgccacctctgtattggttatggcagcacatgtgacggtgaatgttcatggtcctcgtatgcacagttagtagataatatgtgaagctttttaacattcttttgtaaatatcagggcatgtagttattattctgtattatctagctgtgaaactcagtcgagtgttgttattgtagtaatgtgactggaaacctagaaaatgtagatatttgctaaaataagagttaaatataaacgcttgcttgtatatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="38775" stop="37619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38475" g_stop="37922" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="577"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E245000" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245000" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38475" e_stop="37922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</genome_strand>
        <mrna_strand>TGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTTGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTTTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCC-TCGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357549" ref_strand="+" ref_description="SGN-E357549 [cTOS-23-P15]">
      <seq>gccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttctaattgacgagattgtggatgccacctctgtattggttatggcagcacatgtgacggtgaatgttcatggtccttggtatgcacagttagtagataatatgtgaagctttttaacattcttttgtaaatatcagggcatgtagttattattctgtattatctagctgtgaaactcagtcgagtgttgttattgtagtaatgtgactggaaacctagaaaatgtagatatttgctaaaataagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="38789" stop="37647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="37947" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E357549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="37947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGT</genome_strand>
        <mrna_strand>GCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354183" ref_strand="+" ref_description="SGN-E354183 [cTOS-16-I3]">
      <seq>tggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttctaattgacgagattgtggatgccacctctgtattggttatggcagcacatgtgacggtgaatgttcatggtccttggtatgcacagttagtagataatatgtgaagctttttaacattcttttgtaaatatcagggcatgtagntattattctgtattatctagctgtgaaactcagtcgagtgttgttattgtagtaatgtgactggaaactagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="38748" stop="37671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38448" g_stop="37971" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E354183" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38448" e_stop="37971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAAT</genome_strand>
        <mrna_strand>TGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGNTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAA-CTAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322237" ref_strand="-" ref_description="SGN-E322237 [cTOB-24-F14]">
      <seq>agaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattgtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttctaattgacgagattgtggatgccacctctgtattggttatggcagcacatgtgacggtgaatgttcatggtccttggtatgcacagttagtagataatatgtgaagctttttaacattcttttgtaaatatcagggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39202" stop="37753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38902" g_stop="38711" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38571" g_stop="38053" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="710" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E322237" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322237" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38902" e_stop="38711"/>
          <exon e_start="38571" e_stop="38053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCAT</genome_strand>
        <mrna_strand>AGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATT-GTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322001" ref_strand="-" ref_description="SGN-E322001 [cTOB-29-J5]">
      <seq>aaagttggtgtgtgcggtatctgtcttacgcaagaagggttgcctgaaactctgcagctgaattttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttctaattgacgagattgtggatgccacctctgtattggttatggcagcacatgtgacggtgaatgttcatggtccttggtatgcacagttagtagataatatgtgaagctttttaacattcttttgtaaatatcagggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39133" stop="37753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38833" g_stop="38711" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38571" g_stop="38053" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="640" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E322001" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38833" e_stop="38711"/>
          <exon e_start="38571" e_stop="38053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCAT</genome_strand>
        <mrna_strand>AAAGTTGGTGTGTGCGGTATCT-GTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAA-TTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275297" ref_strand="+" ref_description="SGN-E275297 [cLEN-9-N7]">
      <seq>tgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggatatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttctaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39190" stop="37885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38890" g_stop="38711" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38571" g_stop="38185" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="567" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E275297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38890" e_stop="38711"/>
          <exon e_start="38571" e_stop="38185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGA</genome_strand>
        <mrna_strand>TGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGATATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736184" ref_strand="+" ref_description="SGN-E736184 [LC04CF10]">
      <seq>aagagaactagctgctgaaacaagaaataagcaaggcaaggattagaatgttggaaccaattctcaagggacctggagctttagattatttgaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggncaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaanngggagtgtacttggaggaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39632" stop="37947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39330" g_stop="39009" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="333" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="523" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38571" g_stop="38247" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="848" r_length="325" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E736184" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39330" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="38247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGA</genome_strand>
        <mrna_strand>CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGNCAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAANNGGGAGTGTACTTGGAGGAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346070" ref_strand="+" ref_description="SGN-E346070 [cTOF-24-F24]">
      <seq>cgttatggccttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgaccatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaagcatgttatccaagagcctgcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39531" stop="38022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39231" g_stop="39009" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="413" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38571" g_stop="38322" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="663" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E346070" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39231" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="38322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCT</genome_strand>
        <mrna_strand>CGTTATGGCCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACCATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGCATGTTATCCAAGAGCCTGCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708487" ref_strand="+" ref_description="SGN-E708487 [FA35DF04]">
      <seq>cattggtcactttgcagaaactatcctctccagctaaggaggatgagctaaaagcaaattgtcagaagttatttggagaactagctgatatatgtgtggatgggtcagagaattcatttatcctggcactagttaggggtttgcgttttgtactggaagagatgcagctgctgaaacaagaaataagcaaggcaaggattagaatgttggaaccaattctcaagggacctggagctttagattatttgaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="40337" stop="38084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40037" g_stop="39871" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39870" i_stop="39331" i_length="540">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39330" g_stop="39009" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="489" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="679" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38571" g_stop="38384" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="867" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E708487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40037" e_stop="39871"/>
          <exon e_start="39330" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="38384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAGGTAAATAAATTTCTGAACATATTTCATTTCTTCCCTTGGTGTAAACATCAGAATTATAGACTTTAGCGCACTAACTTTGTGGATAGTTCAGCAAGAAAGCATTGTTTCGAAGTAGCTATAGAGGACCAGGGAATGATATTGGTAGTACTATATAGATGTATATACCGACATTTTTGTTTTCTTGATATTTCTTTCTCTCCTCTTCCTCCTCTCTTTCTATGCTGCAGAATCAGGGGAGCGCAAATCATCTTTAAGACGATGGAATTATAGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATG</genome_strand>
        <mrna_strand>CATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703478" ref_strand="+" ref_description="SGN-E703478 [FA21CE03]">
      <seq>agcatttatgaagtctagatagggacctatttcacattcaaaagggagtgtgttggatgcaagtatattctgttctgatacagggtgttctggtgtttgaattcattttgaaacataattgttgtaccacattgcttaacaaacaagtctatagactaaaaattttccgccagctatatctttgaggattgttgtgcttccaatcctgctatttcagtatttttcgtaaccccagtataaggtgtctgatattccctctcttttttgtgcagctgctgaaacaagaaataagcaaggcaaggattagaatgttggaaccaattctcaagggacctggagctttagattatttgaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgtttcaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39902" stop="38146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39602" g_stop="39009" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="784" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38571" g_stop="38446" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="910" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E703478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39602" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="38446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGG</genome_strand>
        <mrna_strand>AGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTTCAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275295" ref_strand="+" ref_description="SGN-E275295 [cLEN-9-L7]">
      <seq>tgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggattaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39190" stop="38203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38890" g_stop="38711" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38571" g_stop="38503" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="249" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E275295" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38890" e_stop="38711"/>
          <exon e_start="38571" e_stop="38503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAAT</genome_strand>
        <mrna_strand>TGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260521" ref_strand="+" ref_description="SGN-E260521 [cLEG-54-G24]">
      <seq>atcatggatttcacattggtcactttgcagaaactatcctctccagctaaggaggatgagctaaaagcaaattgtcagaagttatttggagaactagctgatatatgtgtggatgggtcagagaattcatttatcctggcactagttaggggtttgcgttttgtactggaagagatgcagctgctgaaacaagaaataagcaaggcaaggattagaatgttggaaccaattctcaagggacctggagctttagattatttgaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="40350" stop="38218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40050" g_stop="39871" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39870" i_stop="39331" i_length="540">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39330" g_stop="39009" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="502" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="692" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38571" g_stop="38518" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="746" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E260521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40050" e_stop="39871"/>
          <exon e_start="39330" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="38518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAGGTAAATAAATTTCTGAACATATTTCATTTCTTCCCTTGGTGTAAACATCAGAATTATAGACTTTAGCGCACTAACTTTGTGGATAGTTCAGCAAGAAAGCATTGTTTCGAAGTAGCTATAGAGGACCAGGGAATGATATTGGTAGTACTATATAGATGTATATACCGACATTTTTGTTTTCTTGATATTTCTTTCTCTCCTCTTCCTCCTCTCTTTCTATGCTGCAGAATCAGGGGAGCGCAAATCATCTTTAAGACGATGGAATTATAGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGC</genome_strand>
        <mrna_strand>ATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246369" ref_strand="+" ref_description="SGN-E246369 [cLEF-52-I18]">
      <seq>gttggaaccaattctcaagggacctggagctttagagtattggaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39592" stop="38411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39292" g_stop="39009" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="474" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38571" g_stop="38563" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="483" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E246369" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39292" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="38563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGT</genome_strand>
        <mrna_strand>GTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGAGTATTGGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210025" ref_strand="+" ref_description="SGN-E210025 [cLEC-40-N6]">
      <seq>tcgtaaccccagtctaaggtgtctgatattccctctcttttttgtgcagctgctgaaacaagaaataagcaaggcaaggattaaaatgttggaaccaattctcaagggacctggagctttagattatttgacgaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcacattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacacaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggagtgtgcggtatctggtcttacacaagacaggttgcctgaaactctgcagctgaattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="39679" stop="38464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39379" g_stop="39009" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38900" g_stop="38764" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="508" r_length="137" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E210025" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39379" e_stop="39009"/>
          <exon e_start="38900" e_stop="38764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTT</genome_strand>
        <mrna_strand>TCGTAACCCCAGTCTAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAAAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGACGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCACATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAC............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGAGTGTGCGGTATCTGGTCTTACACAAGACAGGTTGCCTGAAACTCTGCAGCTGAATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698020" ref_strand="+" ref_description="SGN-E698020 [FA05AA11]">
      <seq>cccttaacgagtccttcatggtcagcatcttgaatttgctgagtcttcaaaagttgctgataaacacgataatagtattaaggacaaagttagagaaacgatggagaaggctttctgggatagtgtcatggaatccatgaaaaaggatgaaaatagatacaatcgagttgttgatctaatgagagaagcaagagatgaactttgtagtttggctcctcagagttggagacaaaagattagtgaagctatagatatagacatcctctctcagttgttgatcacaggcaaaatcgacatggattatcttcaaaagatcatggatttcacattggtcactttgcagaaactatcctctccagctaaggaggatgagctaaaagcaaattgtcagaagttatttggagaactagctgatatatgtgtggatgggtcagagaattcatttatcctggcactagttaggggtttgcgttttgtactggaagagatgcagctgctgaaacaagaaataagcaaggcaaggattagaatgttggaaccaattctcaagggacctggagctttagattatttgaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcnagttaaatgaataaaaatcatgcttcacctttgacctctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="40861" stop="38711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40564" g_stop="40482" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40379" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40378" g_stop="40190" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="271" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40189" i_stop="40093" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40092" g_stop="39871" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="493" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39870" i_stop="39331" i_length="540">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39330" g_stop="39011" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="813" r_length="320" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E698020" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40564" e_stop="40482"/>
          <exon e_start="40378" e_stop="40190"/>
          <exon e_start="40092" e_stop="39871"/>
          <exon e_start="39330" e_stop="39011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAGGTAGGTGCATTCTTATGTCTTGATTTACTAAACCATAGCACATTTGGTCAGCAAGGGACAGCAGAAACATATATTGATTTGTTCTGCCCTGATGACCTTACAGGACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAGGTACCTCTGTGATCATTAAGGTCATGTGTCTGCTTCTTTTTACTTTTTGATACGAGTAAGTTCTTTATTCATCTAATAATTTGCCTTCCTTTTTTAGTTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAGGTAAATAAATTTCTGAACATATTTCATTTCTTCCCTTGGTGTAAACATCAGAATTATAGACTTTAGCGCACTAACTTTGTGGATAGTTCAGCAAGAAAGCATTGTTTCGAAGTAGCTATAGAGGACCAGGGAATGATATTGGTAGTACTATATAGATGTATATACCGACATTTTTGTTTTCTTGATATTTCTTTCTCTCCTCTTCCTCCTCTCTTTCTATGCTGCAGAATCAGGGGAGCGCAAATCATCTTTAAGACGATGGAATTATAGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTAC</genome_strand>
        <mrna_strand>CCCTTAACGAGTC-CTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAG.......................................................................................................GACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAG.................................................................................................TTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCNAGTTAAATGAATAAAAATCATGCTTCACCTTTGACCTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312226" ref_strand="+" ref_description="SGN-E312226 [cTOA-5-K17]">
      <seq>tcccatactgatgagggattggtaatggagaatgaactaattgtgaacgagtcacttcatggtcagcatcttgaatttgctgagtcttcaaaagttgctgataaacacgataatagtattaaggacaaagttagagaaacgatggagaaggctttctgggatagtgtcatggaatccatgaaaaaggatgaaaatagatacaatcgagttgttgatctaatgagagaagcaagagatgaactttgtagtttggctcctcagagttggagacaaaagattagtgaagctatagatatagacatcctctctcagttgttgatcacaggcaaaatcgacatggattatcttcaaaagatcatggatttcacattggtcactttgcagaaactatcctctccagctaaggaggatgagctaaaagcaaattgtcagaagttatttggagaactagctgatatatgtgtggatgggtcagagaattcatttatcctggcactagttaggggtttgcgttttgtactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="40904" stop="39581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40604" g_stop="40482" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40379" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40378" g_stop="40190" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="312" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40189" i_stop="40093" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40092" g_stop="39881" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="524" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E312226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40604" e_stop="40482"/>
          <exon e_start="40378" e_stop="40190"/>
          <exon e_start="40092" e_stop="39881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAGGTAGGTGCATTCTTATGTCTTGATTTACTAAACCATAGCACATTTGGTCAGCAAGGGACAGCAGAAACATATATTGATTTGTTCTGCCCTGATGACCTTACAGGACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAGGTACCTCTGTGATCATTAAGGTCATGTGTCTGCTTCTTTTTACTTTTTGATACGAGTAAGTTCTTTATTCATCTAATAATTTGCCTTCCTTTTTTAGTTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGA</genome_strand>
        <mrna_strand>TCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAG.......................................................................................................GACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAG.................................................................................................TTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738785" ref_strand="+" ref_description="SGN-E738785 [LC14DH03]">
      <seq>ttaaagatgcccactctttagaggaggatttggttagagctgcttgccagcttgaactctccatgattcaaatatgtcggatcactgctgaaggagatggtggtgctcttactcacgatctgaaggctatccagaaacaggtgaatgaagatcagagacttttaagagagaaagtgcttaatattagtggaggtgctggtattgaacggatggataatgcaatttctgacacacgaaacaaatactttgaagctaaagaaaatgggagtcctgtgggctctccaattatgcagtcggtagctccaagcccaattgctctgacaagcgcctcttcttctgttgggggttcaaataaaggagggaatttgcttgaggtgagtgatcagaagccaaatcgtgtggtgcgctccttatttagggatgaactacctttaaaagttggttcttctgccaataaaagcttgcagtcatcccatactgatgagggattggtaatggagaatgaactaattgtgaacgagtcacttcatggtcagcatcttgaatttgctgagtcttcaaaagttgctgataaacacgataatagtattaaggacaaagttagagaaacgatggagaaggctttctgggatagtgtcatggaatccatgaaaaaggatgaaaatagatacaatcgagttgttgatctaatgagagaagcaagagatgaactttgtagtttggctcctcagagttggagacaaaagattagtgaagctatagatatagacatcctctctcagttgttgatcacaggcaaaatcgacatggattatcttcaaaagatcatggatttcacattggtcactttgcagaaactatcctctccagctaaggaggatgagctaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="41521" stop="39684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41221" g_stop="41082" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41081" i_stop="40935" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40934" g_stop="40482" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="593" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40481" i_stop="40379" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40378" g_stop="40190" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="782" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40189" i_stop="40093" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40092" g_stop="39984" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="891" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E738785" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41221" e_stop="41082"/>
          <exon e_start="40934" e_stop="40482"/>
          <exon e_start="40378" e_stop="40190"/>
          <exon e_start="40092" e_stop="39984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGATGCCCAGTCTTTAGAGGAGGATTTGGTTAGAGCTGCTTGCCAGCTTGAACTCTCCATGATTCAAATATGTCGGATCACTGCTGAAGGAGATGGTGGTGCTCTTACTCACGATCTGAAGGCTATCCAGAAACAGGTTTTTAACTCCTAGGTTTTATTTTTTCTTGCTTGAAGAAGTTGTCACTCTTTCAATATCTTTAGATTCCTTATATTAGCTTCTTGGTTCAGAAAATGTTGCGTCTATAAAAAAGATTCATTTTTAGACATCATTCCTGTCATGTAGGTGAATGAAGATCAGAGACTTTTAAGAGAGAAAGTGCTTAATATTAGTGGAGGTGCTGGTATTGAACGGATGGATAATGCAATTTCTGACACACGAAACAAATACTTTGAAGCTAAAGAAAATGGGAGTCCTGTGGGCTCTCCAATTATGCAGTCGGTAGCTCCAAGCCCAATTGCTCTGACAAGCGCCTCTTCTTCTGTTGGGGGTTCAAATAAAGGAGGGAATTTGCTTGAGGTGAGTGATCAGAAGCCAAATCGTGTGGTGCGCTCCTTATTTAGGGATGAACTACCTTTAAAAGTTGGTTCTTCTGCCAATAAAAGCTTGCAGTCATCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAGGTAGGTGCATTCTTATGTCTTGATTTACTAAACCATAGCACATTTGGTCAGCAAGGGACAGCAGAAACATATATTGATTTGTTCTGCCCTGATGACCTTACAGGACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAGGTACCTCTGTGATCATTAAGGTCATGTGTCTGCTTCTTTTTACTTTTTGATACGAGTAAGTTCTTTATTCATCTAATAATTTGCCTTCCTTTTTTAGTTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAG</genome_strand>
        <mrna_strand>TTAAAGATGCCCACTCTTTAGAGGAGGATTTGGTTAGAGCTGCTTGCCAGCTTGAACTCTCCATGATTCAAATATGTCGGATCACTGCTGAAGGAGATGGTGGTGCTCTTACTCACGATCTGAAGGCTATCCAGAAACAG...................................................................................................................................................GTGAATGAAGATCAGAGACTTTTAAGAGAGAAAGTGCTTAATATTAGTGGAGGTGCTGGTATTGAACGGATGGATAATGCAATTTCTGACACACGAAACAAATACTTTGAAGCTAAAGAAAATGGGAGTCCTGTGGGCTCTCCAATTATGCAGTCGGTAGCTCCAAGCCCAATTGCTCTGACAAGCGCCTCTTCTTCTGTTGGGGGTTCAAATAAAGGAGGGAATTTGCTTGAGGTGAGTGATCAGAAGCCAAATCGTGTGGTGCGCTCCTTATTTAGGGATGAACTACCTTTAAAAGTTGGTTCTTCTGCCAATAAAAGCTTGCAGTCATCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAG.......................................................................................................GACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAG.................................................................................................TTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364806" ref_strand="+" ref_description="SGN-E364806 [cLPT-4-A6]">
      <seq>agaagacaagctgcaaagggcaaagagacaaagagaagaatatttgatgcagagaggaaaaacacataattccttttgtgacagttatgatgagatacatgaccaggctgacctgctttcaaggaaattagcaaggtgttggaagcagttccttacacgtggaaagacaaccttccaccttgcaaaagcttatactatgctgagtattaacgagaatgcagttaaggtaatgccatttgagcagctagcaatgaagattgaatcgcctaatacactacagagagctaaaggtttgcttgatcggcttgagcttcgcttcaaattgttgcgtgatgttgacagtgtcacaagtaccattggttggggtaatattgatcatcttctcaaccgagtagctacacccaaaaagaaggctacaccaaggagatctctgcgcagtggtggtgcaaaaaaaatagtatccaacttaccagcggtgacaactccagtcaagttgttgaagtatccagttcgaatcgtgctgtgtgcatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="42529" stop="41166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42229" g_stop="42211" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42210" i_stop="42110" i_length="101">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.787" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42109" g_stop="41994" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="135" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41993" i_stop="41866" i_length="128">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41865" g_stop="41466" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="535" r_length="400" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E364806" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42229" e_stop="42211"/>
          <exon e_start="42109" e_stop="41994"/>
          <exon e_start="41865" e_stop="41466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACAAGCTGCAAAGGGTAACAACATATTTACTTGATTCAAGTTAAATAAATTTTAATGATTATGTCCTCTGTATCATCTGACGCTTCCTGTCACTTTGCCACTTGACAATGAACAGGCAAAGAGACAAAGAGAAGAATATTTGATGCAGAGAGGAAAAGCACATAATTCCTTTTGTGACAGTTATGATGAGATACATGACCAGGCTGACCTGCTATCAAGGAAATTAGCAAGGTGAGGGAGCAAAATCTCTTTCATTGTGCAAATTGTCTTAATATAACTGATCTCATTTTCGTAGTTGCACGAAATACTGTTGATAAGATGTACGGAGGTGATGATATCTTGTAAGTATCCTTTTGCAGGTGTTGGAAGCAGTTCCTTACACGTGGAAAGACAACCTTCCACCTTGCAAAAGCTTATACTATGCTGAGTATTAACGAGAATGCAGTTAAGGTAATGCCATTTGAGCAGCTAGCAATGAAGATTGAATCGCCTAATACACTACAGAGAACTAAAGGTTTGCTTGATCGGCTTGAGCTTCGCTTCAAATTGTTGCGTGATGTTGACAGTGTGACAAGTACCATTGGTTGGGGTAATATTGATCATCTTCTCAACCGAGTAGCTACACCCAAAAAGAAGGCTACACCAAGGAGATCTCTGCACAGTCGTGGTGCAAAAAAAATAGTATCGAACTTACCAGCAGTGACAACTCCAGTCAAGTTGTTGAGGTATCCAGTTCGAATCGTGCTGTGTGCATATATG</genome_strand>
        <mrna_strand>AGAAGACAAGCTGCAAAGG.....................................................................................................GCAAAGAGACAAAGAGAAGAATATTTGATGCAGAGAGGAAAAACACATAATTCCTTTTGTGACAGTTATGATGAGATACATGACCAGGCTGACCTGCTTTCAAGGAAATTAGCAAG................................................................................................................................GTGTTGGAAGCAGTTCCTTACACGTGGAAAGACAACCTTCCACCTTGCAAAAGCTTATACTATGCTGAGTATTAACGAGAATGCAGTTAAGGTAATGCCATTTGAGCAGCTAGCAATGAAGATTGAATCGCCTAATACACTACAGAGAGCTAAAGGTTTGCTTGATCGGCTTGAGCTTCGCTTCAAATTGTTGCGTGATGTTGACAGTGTCACAAGTACCATTGGTTGGGGTAATATTGATCATCTTCTCAACCGAGTAGCTACACCCAAAAAGAAGGCTACACCAAGGAGATCTCTGCGCAGTGGTGGTGCAAAAAAAATAGTATCCAACTTACCAGCGGTGACAACTCCAGTCAAGTTGTTGAAGTATCCAGTTCGAATCGTGCTGTGTGCATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740615" ref_strand="+" ref_description="SGN-E740615 [LC22AH03]">
      <seq>ctggacgatgcgattctaccgaaactgtgattccgactgttgctgccgccgccgctgcttcttctcttgttactgttgttgctgtcattaattttccgacgggttagggttatatctttgttttcatttctgaattgttggacttttgatttgtttgtagcaaattgtgatggatttgagtcaatctcaatcgagtaatctgtcgttagggtttagtagtcatgtctcgccggtgatgagcgcacccaatcggtctcatatcgtcgatgattcgattgcttttcagatcgattctagggttaaggaccaatcgtacccgggtacgccggttccacttcaactgatggataaacaaacgaaggagaatgggaaggaggggggagagagtgcggatgaggagagggatgttgaggagtttcgaattttagggcattccatgtgtattaagcggaagagagatactgatgcgagttcatcttcttcctcttcgaagagttttaaggttacgagttctaatgagaatttgcttgggcttgagtcacgaagaaatgcggttagggcctggggtaatcagggtttgcaggtagctgacccggatatatttgagattatggagaaggagaagcagagacagtacaaagggattgaactgattgcttctgaaaattttgtatgcaaggctgtgatggaggcattggggagccatttgacaaataagtattctgaaggagcatcgggggcaaggtattatggtggtaatcagtttattgatgaaattgagacattatgttgtaagcgtgcgttagctgcttttggacttgacccggagaaatggggtgtgaatgtgcaaccatattcatgtacttcagcaaactttgcagtttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="54077" stop="55564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54377" g_stop="55264" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="888" r_length="888" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E740615" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54377" e_stop="55264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACGATGCGATTCTACCGAAACTGTGATTCCGACTGTTGCTGCCGCCGCCGCTGCTTCTTCTCTTGTTACTGTTGTTGCTGTCATTAATTTTCCGACGGGTTAGGGTTATATCTTTGTTTTCATTTCTGAATTGTTGGACTTTTGATTTGTTTGTAGCAAATTGTGATGGATTTGAGTCAATCTCAATCGAGTAATCTGTCGTTAGGGTTTAGTAGTCATGTCTCGCCGGTGATGAGCGCACCCAATCGGTCTCATATCGTCGATGATTCGATTGCTTTTCAGATCGATTCTAGGGTTAAGGACCAATCGTACCCGGGTACGCCGGTTCCACTTCAACTGATGGATAAACAAACGAAGGAGAATGGGAAGGAGGGGGGAGAGAGTGCGGATGAGGAGAGGGATGTTGAGGAGTTTCGAATTTTAGGGCATTCCATGTGTATTAAGCGGAAGAGAGATACTGATGCGAGTTCATCTTCTTCCTCTTCGAAGAGTTTTAAGGTTACGAGTTCTAATGAGAATTTGCTTGGGCTTGAGTCACGAAGAAATGCGGTTAGGGCCTGGGGTAATCAGGGTTTGCAGGTAGCTGACCCGGATATATTTGAGATTATGGAGAAGGAGAAGCAGAGACAGTACAAAGGGATTGAACTGATTGCTTCTGAAAATTTTGTATGCAAGGCTGTGATGGAGGCATTGGGGAGCCATTTGACAAATAAGTATTCTGAAGGAGCATCGGGGGCAAGGTATTATGGTGGTAATCAGTTTATTGATGAAATTGAGACATTATGTTGTAAGCGTGCGTTAGCTGCTTTTGGACTTGACCCGGAGAATTGGGGTGTGAATGTGCAACCATATTCATGTACTTCAGCAAACTTTGCAGTTTATAC</genome_strand>
        <mrna_strand>CTGGACGATGCGATTCTACCGAAACTGTGATTCCGACTGTTGCTGCCGCCGCCGCTGCTTCTTCTCTTGTTACTGTTGTTGCTGTCATTAATTTTCCGACGGGTTAGGGTTATATCTTTGTTTTCATTTCTGAATTGTTGGACTTTTGATTTGTTTGTAGCAAATTGTGATGGATTTGAGTCAATCTCAATCGAGTAATCTGTCGTTAGGGTTTAGTAGTCATGTCTCGCCGGTGATGAGCGCACCCAATCGGTCTCATATCGTCGATGATTCGATTGCTTTTCAGATCGATTCTAGGGTTAAGGACCAATCGTACCCGGGTACGCCGGTTCCACTTCAACTGATGGATAAACAAACGAAGGAGAATGGGAAGGAGGGGGGAGAGAGTGCGGATGAGGAGAGGGATGTTGAGGAGTTTCGAATTTTAGGGCATTCCATGTGTATTAAGCGGAAGAGAGATACTGATGCGAGTTCATCTTCTTCCTCTTCGAAGAGTTTTAAGGTTACGAGTTCTAATGAGAATTTGCTTGGGCTTGAGTCACGAAGAAATGCGGTTAGGGCCTGGGGTAATCAGGGTTTGCAGGTAGCTGACCCGGATATATTTGAGATTATGGAGAAGGAGAAGCAGAGACAGTACAAAGGGATTGAACTGATTGCTTCTGAAAATTTTGTATGCAAGGCTGTGATGGAGGCATTGGGGAGCCATTTGACAAATAAGTATTCTGAAGGAGCATCGGGGGCAAGGTATTATGGTGGTAATCAGTTTATTGATGAAATTGAGACATTATGTTGTAAGCGTGCGTTAGCTGCTTTTGGACTTGACCCGGAGAAATGGGGTGTGAATGTGCAACCATATTCATGTACTTCAGCAAACTTTGCAGTTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207279" ref_strand="+" ref_description="SGN-E207279 [cLEC-30-C20]">
      <seq>ataatgggattggatacaccatctggtggaaacacaagtcatgggtattatctacctaatgggaggagagtttcaggggcttcaattttctttgagtctctctcttacaaggttgacccccaaactgggtatgtagattttgataagctcgaggaaagggctcttgatttccgtcccaagatacttatatgtggggggagttcgtatccccgggaatgggattatgcaaagtttagacagattgctgacaaatgtggtgcggttttgctgtgcgatatggcacaaattactggtctcattgctgcaaaggaatgtgcgagtccgtttgattattgtgatatagttacctcaacaactcacaaaagtcttcgaggtcctaggggaggtattatcttttataggaaaggttcatagccaagaaagagaggcctgctcttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="54990" stop="57070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55290" g_stop="55598" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55599" i_stop="56638" i_length="1040">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56639" g_stop="56770" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="441" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E207279" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55290" e_stop="55598"/>
          <exon e_start="56639" e_stop="56770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGGGATTGGATACACCATCTGGTGGAAACACAAGTCATGGGTATTATCTACCTAATGGGAGGAGAGTTTCAGGGGCTTCAATTTTCTTTGAGTCTCTCTCTTACAAGGTTGACCCCCAAACTGGGTATGTAGATTTTGATAAGCTCGAGGAAAGGGCTCTTGATTTCCGTCCCAAGATACTTATATGTGGGGGGAGTTCGTATCCCCGGGAATGGGATTATGCAAAGTTTAGACAGATTGCTGACAAATGTGGTGCGGTTTTGTTGTGCGATATGGCACAAATTAGTGGTCTCATTGCTGCAAAGGTAATCTTTCATGCTTTTTGATTATTATTTTTTACTCATTCATTTCATTCATGCATCAGTTTAAATTTCTTCTTAATGACTGGAGTGCTTACTGCTGATGTTTTGTTTGATAGCCAGAAGGATCAACCCAATAACATTTGTTTCAGTCTAGTTCATTCCACGTATAGAAGCCTTTGGATTTTAGCTATTTAATTAGGCCAACTAACTAGAGCTTACTGATTCTTATATACCTCTTCAAAAAAAACAGCCAGCTTACTGAAGCAAGTTGCCCTTATGGTTACTTTTTTTGGGCATCACTTGCTTAATGTGTAAGTTATCTGATTGAAAATTTTTGCCTTTTTAAATTCATGATTAGTTTGTGGATTATCGTTTTAGCTACAGTGTCATTTTTTCATATGCTGTATGAATTAATAGGCAATTTGACTGCAAAATGATCACGTGCCACTCAATTTTGAGGTCTTAAGATAATACTTAATTGTTGATTTCAGTACGTTACTATATGCCATTGAATCTATGTTTTTTTTGTGTGGTGTGTGCATGCCCGCACGTGTAAATATACCCTTGGGGGTAATGGTATTGTCTCCAATTAATGTAACTAAGCTATAGTTATCCTTGTTACGGCTGTGAACTTTGTCTGAAGGGAGTTGGTGTGAAAAAGGGTCAACTGATTTTTATTTGAGTTCGCTTCTGAGTTCACTTTGTTAGAATATTATATATATTTTTGATGTAGGGTTAAGAATATTATATTTGACTTTCTGGAGAAATAAAAGCTTTTACAGTTTGGTATTGTTTTTAAATGGAAAGATAGGATGTCTAAGGGGGGAGTATTGTGGGAATCTGTAAGACATGTCACCCTTAGTCAATCTTGCTTCATGAGTAAATGTTTTGGTGTCAGCTCACTGACATACCTTGTGTCTCTGCGTGCTATTTGCTGTATGAATTATTTCCTCTCTAATCCTATCAGAGTTATTTGTAATTTGTCCTTTTATTACATTTGTAATCCACGAACTTGCTAATCTGTGGCATGGTTTTTGCTACAGGAATGTGCGAGTCCGTTTGATTATTGTGATATAGTTACCTCAACAACTCACAAAAGTCTTCGAGGTCCTAGGGGAGGTATTATCTTTTATAGGAAAGGTTCAAAGCCAAGAAAGAGAGGCCTGCTCTTGAAT</genome_strand>
        <mrna_strand>ATAATGGGATTGGATACACCATCTGGTGGAAACACAAGTCATGGGTATTATCTACCTAATGGGAGGAGAGTTTCAGGGGCTTCAATTTTCTTTGAGTCTCTCTCTTACAAGGTTGACCCCCAAACTGGGTATGTAGATTTTGATAAGCTCGAGGAAAGGGCTCTTGATTTCCGTCCCAAGATACTTATATGTGGGGGGAGTTCGTATCCCCGGGAATGGGATTATGCAAAGTTTAGACAGATTGCTGACAAATGTGGTGCGGTTTTGCTGTGCGATATGGCACAAATTACTGGTCTCATTGCTGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGCGAGTCCGTTTGATTATTGTGATATAGTTACCTCAACAACTCACAAAAGTCTTCGAGGTCCTAGGGGAGGTATTATCTTTTATAGGAAAGGTTCATAGCCAAGAAAGAGAGGCCTGCTCTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301445" ref_strand="+" ref_description="SGN-E301445 [cLEX-8-O6]">
      <seq>acaaattagtggtctcattgctgcaaaggaatgtgcgagtccgtttgattattgtgatatagttacctcaacaactcacaaaagtcttcgaggtcctaggggaggtattatcttttataggaaaggttcaaagccaagaaagagaggcctgctcttgaatcaaggtgatggcagtgataagtatgattttgaggaaaagataaactttgctgtttttcctgcactgcaaggagggccacacaacaaccatattgctgccctcgccatagcattgaaacaagtggcaactcctgattacagggcttatatgcaacaagttaagagaaatgctcaggcgttggcagctgctttattgagaagaaactgcagactggttactggagggactgacaatcacatgatattgtgggatctaagaaaccttgggttaacaggcaagaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="56311" stop="57356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56639" g_stop="57044" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="434" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E301445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56639" e_stop="57044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTGCGAGTCCGTTTGATTATTGTGATATAGTTACCTCAACAACTCACAAAAGTCTTCGAGGTCCTAGGGGAGGTATTATCTTTTATAGGAAAGGTTCAAAGCCAAGAAAGAGAGGCCTGCTCTTGAATCAAGGTGATGGCAGTGATAAGTATGATTTTGAGGAAAAGATAAACTTTGCTGTTTTTCCTGCACTGCAAGGAGGGCCACACAACAACCATATTGCTGCCCTCGCCATAGCATTGAAACAAGTGGCAACTCCTGATTACAGGGCTTATATGCAACAAGTTAAGAGAAATGCTCAGGCGTTGGCAGCTGCTTTATTGAGAAGAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAG</genome_strand>
        <mrna_strand>GAATGTGCGAGTCCGTTTGATTATTGTGATATAGTTACCTCAACAACTCACAAAAGTCTTCGAGGTCCTAGGGGAGGTATTATCTTTTATAGGAAAGGTTCAAAGCCAAGAAAGAGAGGCCTGCTCTTGAATCAAGGTGATGGCAGTGATAAGTATGATTTTGAGGAAAAGATAAACTTTGCTGTTTTTCCTGCACTGCAAGGAGGGCCACACAACAACCATATTGCTGCCCTCGCCATAGCATTGAAACAAGTGGCAACTCCTGATTACAGGGCTTATATGCAACAAGTTAAGAGAAATGCTCAGGCGTTGGCAGCTGCTTTATTGAGAAGAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705336" ref_strand="+" ref_description="SGN-E705336 [FA26DD05]">
      <seq>ctgcaaggagggccacacaacaaccatattgctgccctcgccatagcattgaaacaagtggcaactcctgattacagggcttatatgcaacaagttaagagaaatgctcaggcgttggcagctgctttattgagaagaaactgcagactggttactggagggactgacaatcacatgatattgtgggatctaagaaaccttgggttaacaggcaagaattttgagaaggtctgcgagttgtgtcacatcactctcaacaaagtaatggtctttgatgataatggaagtattactcctggaggtgtgaggatcgggacccctgctatgacctcacgaggctgtatagagaatgattttgatacgatggcagatttcctcctcaaggcagcacaaattacaaattcgatacagagagagcatggaaagctcgctaagggttttctgaaaggccttgagaacaataaagatgttatcgagttacggacacgtgttgaaaattttgcaaccctctttgctatgcctgggtttgaagtataatgtagctggaaatgtagttctggtggaggaattctttctttatttgttgaccaacctttgttgtggatggggagaacagcggtgcacccaactcgtggttagtgattgagtaggctatgtgatgtgttcaagtttccgttgagcttagcaggcatggattaacttatgatatgccacaatggagtgttttgcatccttatctactgccatggtaaattgaagtaatggtctgtgtcagttttttttgtcaagggttttggtaaattaaatagtgtcactgtttcattttcctatagctattttaaacacactcgtttcgggtctcactattcttgggtgnatctatatattattatatctttaacattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="56534" stop="59976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56834" g_stop="57044" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57045" i_stop="58892" i_length="1848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58893" g_stop="58994" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="313" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58995" i_stop="59080" i_length="86">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59081" g_stop="59676" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="909" r_length="596" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E705336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56834" e_stop="57044"/>
          <exon e_start="58893" e_stop="58994"/>
          <exon e_start="59081" e_stop="59676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGGAGGGCCACACAACAACCATATTGCTGCCCTCGCCATAGCATTGAAACAAGTGGCAACTCCTGATTACAGGGCTTATATGCAACAAGTTAAGAGAAATGCTCAGGCGTTGGCAGCTGCTTTATTGAGAAGAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAGGTAGAAATCTTTTCTGTTATACCTCTTGCCAGTCTCTTTTGTTCATTAAGTTATGTCATTTGTCTCTGGTGAACTCTTTTGTTTTTTTTTAATAAATATGGTAGCTAGTATTGTCTTTGGTGAAATACATTGATGAGATCTGGTTATTTCTTTTGTCTTATACCATAATTTTCCTTTCTCCCTGTCTATTTGGATATTTCTTTTAAGAATGAATTGGAAAATTAAGGGGCGGTGGAGTAGGATATTATCAATCAACTAAGCCTCCAGCCTTAGATAGTTAGGTCAGCTGTATGCTTGCTTTGTGGCAGTTCCTTTACAGTCGACTAAGATACTGCTGAGAACATAAATAAGAAACTAGTCTAGCCTTTGTAAGGCAATTGACATTTCTGGTCATAGGCACTGGGTCATATTATTCATCTCTTCTGCTTCATGAAAAAAATTATCTCTTCTTTTCATCCTAGTTAGGTAAATGGATTGCATTCTCTTCTTCGTTCATGTTTCATTCCTATCATTTGCTGTAAATTCCTCTAGCACCGGTTTCGGATTTGACTTCTTTATCAGTTTTGCTACTGAATTGTACATTTCTTCTTCGATGAAGTTAGTATATTCTATGACCTGGGGATCAATATTTATCCAAGTTTGGCAGTATATCTCGTTAGGTTTGGTCTCGAGATTTCTTTAGAAGTCTGATCTGCTTTGCTGCTATTGCAAGATTGTCAAGAGGCAATGAGTCTGCCCAAATCTTACTTGTGGTGAGATGTCTTGGCCGCTTGTCATATATTGATTCCGTCCTGCTCAATTGAATGTCTTGTTTAAGTTTGAGTTGATTACTTAAAGAACAATCAAAAGTGTGTGTTTGTTAAGAAATGGAGATCGTTTGGGAGGCACCATTTTGTTTTTGTGCTCTTACTACTTGAATGTTGTCTTGTCTCTGGCATTATGAACAGAACATGAAGACATGTATTTTAAATTTGAGAGTTAGTTGGTTGCAGTTAACATGGCAATAATATGAGATAAGGATCATGGACACCAATGTTGCTAAAGATAAATAGTAGTAATTTTACCTTATAATTGTTATTAAAAAATATTTGTAATCTTTGCAAATATACTTTTGACATGAAAAGCATCTACAATTGTTAAATGGCATGTGAGGTGGGTCTTCCCAGAGAGTTAGGTCCTGGCTTAGTTGCTGACACAGTCTGAAAGTTGAGTGTTTTTATGTACAAGAGAAGGCGTTTATTATTGTCCAACGCCTGTGATGTAAGTATCAAGGAGAGCTAACTCCTGGCATAACCAGCACAACTCAATATTATCAAAGACGAAAAGGTTATAAGATTCCTTGTGTTTATAGCAATGTGAAATTAAAAAAAACAACTATTGTGAAGTCGGTGTAATATGAAAAGAAAAACTATGCCAATCATGTTAACAATAATGTTGAATTTATGACTTGTAAGCTATTTTCAAATTCATATTGGTGACTACTTGTGTTGTCCAATTTCTAATTTGTTATTCCCAATTATTAATATACTTCCATAAAATTTCATGACAACCAATCTATCACTGTCATCTACAGTTATTTGTTTGATGCTATTCTTTCTGAAGCGGTCCATAAGTGTGGCGATGTGCCTAGAATCAGGCCTTTAACAACACTTGTTCAACTAGGGTATTATAGGCATTGATTGATTTACTTGTACACTTAAAAAATAACTCATTATCCCGTGCCAATTCTATTGCTTGTGATTCTGGGACAGGATGTTCCTATTTCACCATGATTAGAATTGCAGTTGCTTGACTTGCTTTGCTGGTTCTGAATGTATTAGTGATGATCTTTGTATTTCTGTGTTGCAGGCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCGGTAAGTTTGGTTATGGAGGCACATATGTAAAATTTTAGGAGTTGAAAAGCTGTTTGCATAATCAATTTTTCTTGTTCTGACTGCAGGGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGTTGTATCTATATATTATTATATCTTTAACATTCAAC</genome_strand>
        <mrna_strand>CTGCAAGGAGGGCCACACAACAACCATATTGCTGCCCTCGCCATAGCATTGAAACAAGTGGCAACTCCTGATTACAGGGCTTATATGCAACAAGTTAAGAGAAATGCTCAGGCGTTGGCAGCTGCTTTATTGAGAAGAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCG......................................................................................GGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGGTGNATCTATATATTATTATATCTTTAACATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204021" ref_strand="+" ref_description="SGN-E204021 [cLEC-22-A6]">
      <seq>gaaactgcagactggttactggagggactgacaatcacatgatattgtgggatctaagaaaccttgggttaacaggcaagaattttgagaaggtctgcgagttgtgtcacatcactctcaacaaagtaatggtctttgatgataatggaagtattactcctggaggtgtgaggatcgggacccctgctatgacctcacgaggctgtatagagaatgattttgatacgatggcagatttcctcctcaaggcagcacaaattacaaattcgatacagagagagcatggaaagctcgctaagggttttctgaaaggccttgagaacaataaagatgttatcgagttacggacacgtgttgaaaattttgcaaccctctttgctatgcctgggtttgaagtataatgtagctggaaatgtagttctggtggaggaattctttctttatttgttgaccaacctttgttgtggatggggagaacagcggtgcacccaactcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="56670" stop="59700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56970" g_stop="57044" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57045" i_stop="58892" i_length="1848">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58893" g_stop="58994" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="177" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58995" i_stop="59080" i_length="86">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59081" g_stop="59400" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="497" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E204021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56970" e_stop="57044"/>
          <exon e_start="58893" e_stop="58994"/>
          <exon e_start="59081" e_stop="59400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAGGTAGAAATCTTTTCTGTTATACCTCTTGCCAGTCTCTTTTGTTCATTAAGTTATGTCATTTGTCTCTGGTGAACTCTTTTGTTTTTTTTTAATAAATATGGTAGCTAGTATTGTCTTTGGTGAAATACATTGATGAGATCTGGTTATTTCTTTTGTCTTATACCATAATTTTCCTTTCTCCCTGTCTATTTGGATATTTCTTTTAAGAATGAATTGGAAAATTAAGGGGCGGTGGAGTAGGATATTATCAATCAACTAAGCCTCCAGCCTTAGATAGTTAGGTCAGCTGTATGCTTGCTTTGTGGCAGTTCCTTTACAGTCGACTAAGATACTGCTGAGAACATAAATAAGAAACTAGTCTAGCCTTTGTAAGGCAATTGACATTTCTGGTCATAGGCACTGGGTCATATTATTCATCTCTTCTGCTTCATGAAAAAAATTATCTCTTCTTTTCATCCTAGTTAGGTAAATGGATTGCATTCTCTTCTTCGTTCATGTTTCATTCCTATCATTTGCTGTAAATTCCTCTAGCACCGGTTTCGGATTTGACTTCTTTATCAGTTTTGCTACTGAATTGTACATTTCTTCTTCGATGAAGTTAGTATATTCTATGACCTGGGGATCAATATTTATCCAAGTTTGGCAGTATATCTCGTTAGGTTTGGTCTCGAGATTTCTTTAGAAGTCTGATCTGCTTTGCTGCTATTGCAAGATTGTCAAGAGGCAATGAGTCTGCCCAAATCTTACTTGTGGTGAGATGTCTTGGCCGCTTGTCATATATTGATTCCGTCCTGCTCAATTGAATGTCTTGTTTAAGTTTGAGTTGATTACTTAAAGAACAATCAAAAGTGTGTGTTTGTTAAGAAATGGAGATCGTTTGGGAGGCACCATTTTGTTTTTGTGCTCTTACTACTTGAATGTTGTCTTGTCTCTGGCATTATGAACAGAACATGAAGACATGTATTTTAAATTTGAGAGTTAGTTGGTTGCAGTTAACATGGCAATAATATGAGATAAGGATCATGGACACCAATGTTGCTAAAGATAAATAGTAGTAATTTTACCTTATAATTGTTATTAAAAAATATTTGTAATCTTTGCAAATATACTTTTGACATGAAAAGCATCTACAATTGTTAAATGGCATGTGAGGTGGGTCTTCCCAGAGAGTTAGGTCCTGGCTTAGTTGCTGACACAGTCTGAAAGTTGAGTGTTTTTATGTACAAGAGAAGGCGTTTATTATTGTCCAACGCCTGTGATGTAAGTATCAAGGAGAGCTAACTCCTGGCATAACCAGCACAACTCAATATTATCAAAGACGAAAAGGTTATAAGATTCCTTGTGTTTATAGCAATGTGAAATTAAAAAAAACAACTATTGTGAAGTCGGTGTAATATGAAAAGAAAAACTATGCCAATCATGTTAACAATAATGTTGAATTTATGACTTGTAAGCTATTTTCAAATTCATATTGGTGACTACTTGTGTTGTCCAATTTCTAATTTGTTATTCCCAATTATTAATATACTTCCATAAAATTTCATGACAACCAATCTATCACTGTCATCTACAGTTATTTGTTTGATGCTATTCTTTCTGAAGCGGTCCATAAGTGTGGCGATGTGCCTAGAATCAGGCCTTTAACAACACTTGTTCAACTAGGGTATTATAGGCATTGATTGATTTACTTGTACACTTAAAAAATAACTCATTATCCCGTGCCAATTCTATTGCTTGTGATTCTGGGACAGGATGTTCCTATTTCACCATGATTAGAATTGCAGTTGCTTGACTTGCTTTGCTGGTTCTGAATGTATTAGTGATGATCTTTGTATTTCTGTGTTGCAGGCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCGGTAAGTTTGGTTATGGAGGCACATATGTAAAATTTTAGGAGTTGAAAAGCTGTTTGCATAATCAATTTTTCTTGTTCTGACTGCAGGGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGT</genome_strand>
        <mrna_strand>GAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCG......................................................................................GGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204019" ref_strand="+" ref_description="SGN-E204019 [cLEC-22-A2]">
      <seq>aaaccttgggttaacaggcaagaattttgagaaggtctgcgagttgtgtcacatcactctcaacaaagtaatggtctttgatgataatggaagtattactcctggaggtgtgaggatcgggacccctgctatgacctcacgaggctgtatagagaatgattttgatacgatggcagatttcctcctcaaggcagcacaaattacaaattcgatacagagagagcatggaaagctcgctaagggttttctgaaaggccttgagaacaataaagatgttatcgagttacggacacgtgttgaaaattttgcaaccctctttgctatgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="58580" stop="59590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58893" g_stop="58994" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="119" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58995" i_stop="59080" i_length="86">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59081" g_stop="59290" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="329" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E204019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58893" e_stop="58994"/>
          <exon e_start="59081" e_stop="59290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCGGTAAGTTTGGTTATGGAGGCACATATGTAAAATTTTAGGAGTTGAAAAGCTGTTTGCATAATCAATTTTTCTTGTTCTGACTGCAGGGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTG</genome_strand>
        <mrna_strand>GCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCG......................................................................................GGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230705" ref_strand="+" ref_description="SGN-E230705 [cLEL-35-M2](-)">
      <seq>tatgcctgggtttgaagtataatgtagctggaaatgtagttctggtggaggaattctttctttatttgttgaccaacctttgttgtggatggggagaacagcggtgcacccaactcgtggttagtgattgagtaggctatgtgatgtgttcaagtttccgttgagcttagcaggcatggattaacttatgatatgccacaatggagtgttttgcatccttatctactgccatggtaaattgaagtaatggtctgtgtcagttttttttgtcaagggttttggtaaattaaatagtgtcactgtttcattttcctatagctattttaaacacactcgtttcgggtctcactattcttggttgtatctatatatcactatatctttaacattcancttgtaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="58983" stop="59985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59283" g_stop="59678" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="416"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E230705" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59283" e_stop="59678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGTTGTATCTATATATTATTATATCTTTAACATTCAACTT</genome_strand>
        <mrna_strand>TATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGTTGTATCTATATATCACTATATCTTTAACATTCANCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230631" ref_strand="+" ref_description="SGN-E230631 [cLEL-35-M2](-)">
      <seq>tgtagttctggtggaggaattctttctttatttgttgaccaacctttgttgtggatggggagaacagcggtgcacccaactcgtggttagtgattgagtaggctatgtgatgtgttcaagtttccgttgagcttagcaggcatggattaacttatgatatgccacaatggagtgttttgcatccttatctactgccatggtaaattgaagtaatggtctgtgtcagttttttttgtcaagggttttggtaaattaaatagtgtcactgtttcattttcctatagctattttaaacacactcgtttcgggtctcactattcttggttgtatctatatattattatatctttaacattcaacttgtacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="59017" stop="59985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59317" g_stop="59678" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="382"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E230631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59317" e_stop="59678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGTTGTATCTATATATTATTATATCTTTAACATTCAACTT</genome_strand>
        <mrna_strand>TGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGTTGTATCTATATATTATTATATCTTTAACATTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733833" ref_strand="+" ref_description="SGN-E733833 [LB11AC08]">
      <seq>actacattgaaaatgggtggtcagttcgttgtgctcagtttagctgtattcttcttcatcagtttctcacaagcaacatcaacttcaataaaacccttaattttcatcgagaccaatcatagcgccactgctgctagaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatttgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacggatactttccagatccgcggcccctgtatttatgagatctgctacctttacttgaagagagttggatccgacggctggaaaccggagagcgtcaaggtgtacggttcagatcgtcctgcgattacctttaaatataataagcttcttcctaatggagtctggtatggatttaatcactgtcgtaagatcatgtagctgatctgccgtagaattccactatccatcaaatttgttttttaatttatgtatttaatctctgttttgtttgctttcagagattagtttatcgccaaataaaggtatttttttgatttctcaggtaccttgttgttacaattttagcctttataaatgaactttatcagatgcgttgtatccataaatggggattttgattcgccctattgtaatttttttttggttaaaccttattataatttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69123" stop="70454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69420" g_stop="70153" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="750"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E733833" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69420" e_stop="70153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACATTGAAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAGATGCGTTGTATCCATAAATGGGGATTTTGATTCGCCCTATTGTAA--TTTTTTTGGTTAAACCTTATTATAATTTC</genome_strand>
        <mrna_strand>ACTACATTGAAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTG-TTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAGATGCGTTGTATCCATAAATGGGGATTTTGATTCGCCCTATTGTAATTTTTTTTTGGTTAAACCTTATTATAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278066" ref_strand="+" ref_description="SGN-E278066 [cLER-4-M3]">
      <seq>gaaaatgggtggtcagttcgttgtgctcagtttagctgtattcttcttcatcagtttctcacaagcaacatcaacttcaataaaacccttaattttcatcgagaccaatcatagcgccactgctgctagaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatttgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacggatactttccagatccgcggcccctgtatttatgagatctgctacctttacttgaagagagttggatccgacggctggaaaccggagagcgtcaaggtgtacggttcagatcgtcctgcgattacctttaaatataataagcttcttcctaatggagtctggtatggatttaatcactgtcgtaagatcatgtagctgatctgccgtagaattccactatccatcaaatttggttttttaatttatgtatttaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69128" stop="70271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69428" g_stop="69971" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E278066" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69428" e_stop="69971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTC</genome_strand>
        <mrna_strand>GAAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGGTTTTTTAATTTATGTATTTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279567" ref_strand="+" ref_description="SGN-E279567 [cLER-5-D2]">
      <seq>gaaaatgggtggtcagatcgttgtgctcagtttacctgtattcttcttcatcagtttctcacaagcaacatcaacttcaataaaacccttaattttcatcgagaccaatcatagcgccactgctgctagaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatttgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacagatactttccagatccgcggcccctgtatttatgagatctgctacctttacttgaagagagttggatccgacggctggaaaccggagagcgtcaaggtgtacggttcagatcagcctgcgattacctttaaatataataagcttcttcctaatggagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69128" stop="70173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69428" g_stop="69873" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E279567" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69428" e_stop="69873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCT</genome_strand>
        <mrna_strand>GAAAATGGGTGGTCAGATCGTTGTGCTCAGTTTACCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACAGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCAGCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244647" ref_strand="+" ref_description="SGN-E244647 [cLED-38-C19]">
      <seq>aaaatgggtggtcagttcgttgtgctcagtttagctgtattcttcttcatcagtttctcacaagcaacatcaacttcaataaaacccttaattttcatcgagaccaatcatagcgccactgctgctagaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatttgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacggatactttccagatccgcggcccctgtatttatgagatctgctacctttacttgaagagagttggatccgacggctggaaaccggagagcgtcaaggtgtacggttcagatcgtcctgcgattacctttaaatataataagcttcttcctaatggagtctggtatggatttaatcactgtcgtaagatcatgtagctgatctgccgtagaattcccctatccatcaaatttgttttttaatttatgtatttaatctctgttttgtttgctttcagagattagtttatcggcaaataaaggtatttttttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69129" stop="70327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69429" g_stop="70027" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E244647" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69429" e_stop="70027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATT</genome_strand>
        <mrna_strand>AAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCCCTATCCATCAAATTTG-TTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGGCAAATAAAGGTATTTTTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712989" ref_strand="+" ref_description="SGN-E712989 [FB06BF05]">
      <seq>gttcgttgtgctcagtttagctgtattcttcttcatcagtttctcacaagcaacatcaacttcaataaaacccttaattttcatcgagaccaatcatagcgccactgctgctagaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatttgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacggatactttccagatccgcggcccctgtatttatgagatctgctacctttacttgaagagagttggatccgacggctggaaaccggagagcgtcaaggtgtacggttcagatcgtcctgcgattacctttaaatataataagcttcttcctaatggagtctggtatggatttaatcactgtcgtaagatcatgtagctgatctgccgtagaattccactatccatcaaatttgtttttttaatttatgtatttaatctctgttttgtttgctttcagagattagtttatcgccaaataaaggtatttttttgatttctcaggtaccttgttgttacaattttagcctttataaatgaactttatcagatgcgttgtatccataaatggggattttgattcgccctattgtaattttttttggttaaaccttattataatttcattcacagcatctacgtaataaaaaggaaaatatatgtgttcatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69143" stop="70505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69443" g_stop="70212" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E712989" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69443" e_stop="70212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAGATGCGTTGTATCCATAAATGGGGATTTTGATTCGCCCTATTGTAA-TTTTTTTGGTTAAACCTTATTATAATTTCATTCACAGCATCTACGTAATAAAAAGGAAAATATATGTGTTCATATTATAAACGGCAAC</genome_strand>
        <mrna_strand>GTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAGATGCGTTGTATCCATAAATGGGGATTTTGATTCGCCCTATTGTAATTTTTTTTGGTTAAACCTTATTATAATTTCATTCACAGCATCTACGTAATAAAAAGGAAAATATATGTGTTCATATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243093" ref_strand="+" ref_description="SGN-E243093 [cLEF-15-K21]">
      <seq>tcgttgtgctcagtttagctgtattcttcttcatcagtttctcacaagcaacatcaacttcggtaaaacccttaattttcattgggaccaatcatagcgccactgctgctggaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatctgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacggatactgtccagatccgcggcccctgcatttatgagatctgctacctttacttgaagagagttggatccgacagctggaaaccggagagcggcatggtgtacggttcagatcggcctgcgattacctttaaatataataagctccttgctaatggagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69145" stop="70172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69445" g_stop="69872" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E243093" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69445" e_stop="69872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTC</genome_strand>
        <mrna_strand>TCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCGGTAAAACCCTTAATTTTCATTGGGACCAATCATAGCGCCACTGCTGCTGGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATCTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTGTCCAGATCCGCGGCCCCTGCATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACAGCTGGAAACCGGAGAGCGGCATGGTGTACGGTTCAGATCGGCCTGCGATTACCTTTAAATATAATAAGCTCCTTGCTAATGGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346902" ref_strand="+" ref_description="SGN-E346902 [cTOF-32-B23]">
      <seq>agtttagctgtattcttcttcatcagtttctcacaagcaacatcaacttcaataaaacccttaattttcatcgagaccaatcatagcgccactgctgctagaagctgctcatacacattgaccatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagatgcttatggatttgaggtctatgcgcccaggatagataatccatcatcaaggatattcgagacctgttctacggatactttccagatccgcggcccctgtatttatgagatctgctacctttacttgaagagagttggatccgacggctggaaaccggagagcgtcaaggtgtacggttcagatcgtcctgcgattacctttaaatataataagcttcttcctaatggagtctggtatggatttaatcactgtcgtaagatcatgtagctgatctgccgtagaattccactatccatcaaatttgtttttttaatnaatgtatttaatctctgttttgtttgctttcagagattagtttatcgccaaataaaggtatttttttgatttctcaggtaccttgttgttacaattttagcctttataaatgaactttatcaaanaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="69156" stop="70380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69456" g_stop="70086" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E346902" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69456" e_stop="70086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAGATGCGTT</genome_strand>
        <mrna_strand>AGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATNAATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAAANAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746929" ref_strand="+" ref_description="SGN-E746929 [GI|47104353]">
      <seq>gagagagcgtttcttacagtgatcaaatccaaaccaaactccattaggaagaaacttatcatacttaaaggtaatagcaggacgatctggaccgtaaactttgacgctctccggtttccagccgtccgatccaactctcttcaaatttaggtagcagatctcataaatacaggggccacggatctgaaaagtatcagtagaacagctttcgaatatcttcgacgacggatcatctagctttggcgcgtgaacctcaaaaccgtaagaatctccaaaagcaatactgactctgtctctggtgtatttaggtgaagaacagcttgttttgattgtcaatgtgtatgagcagcttctagcagcagcagcggtgctctgattggtttcgatgtaaattaggggttttgttgaagttgaagtaattgattttgcttgagagagacagaagaagaaagccactaagctggggaacacaaagaggtgaacactcatcttcattatcaccatttaattttgattattgttgttgacgaactttaatagtctcaccacccctatttttcttttttctttttctttttttacgcatcaggcattgcgtatcgcattgacgaaagagatttcaatgcaacgtggctactaaaaacagtaaataaactttttaaataaagaattggtcctacattctataaactactactccaatattggagttaactctatacgtaatctggaaatttcgtaaatagtagtaattataataaagttaattatattttatagctatagtttatatatttaagtgttataattatcacttaaattattttattggtgattttgtataatttgcgcttatatttatttaattgagttatatttgtataaatttgaaataacgaattgatacaagcacaagcatctgaattttaaatagttacacaaattatattatacaaacgttatacaaactatgaatagtacaagatttgaattatacaaattcaaagacttagcccatgtaattatcgttgaatgttgatcgcgagtggtaatcaacaaaaactatgacaatgatgactaagaattagtatatatttacataatcatgtagtttaagaattagtatatatttacataatcatgtagtttagtattccctccgtcctaattttgctttttcctttaattttactttcgtacttcaaaattactttgagtttacaattttatatcgattcaaaacattaaaatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="72414" stop="70552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72114" g_stop="70859" g_length="1256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1256" r_length="1256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1257" polyA_stop="1268"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E746929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1256</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72114" e_stop="70859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGCGTTTCTTACAGTGATCAAATCCAAACCAAACTCCATTAGGAAGAAACTTATCATACTTAAAGGTAATAGCAGGACGATCTGGACCGTAAACTTTGACGCTCTCCGGTTTCCAGCCGTCCGATCCAACTCTCTTCAAATTTAGGTAGCAGATCTCATAAATACAGGGGCCACGGATCTGAAAAGTATCAGTAGAACAGCTTTCGAATATCTTCGACGACGGATCATCTAGCTTTGGCGCGTGAACCTCAAAACCGTAAGAATCTCCAAAAGCAATACTGACTCTGTCTCTGGTGTATTTAGGTGAAGAACAGCTTGTTTTGATTGTCAATGTGTATGAGCAGCTTCTAGCAGCAGCAGCGGTGCTCTGATTGGTTTCGATGTAAATTAGGGGTTTTGTTGAAGTTGAAGTAATTGATTTTGCTTGAGAGAGACAGAAGAAGAAAGCCACTAAGCTGGGGAACACAAAGAGGTGAACACTCATCTTCATTATCACCATTTAATTTTGATTATTGTTGTTGACGAACTTTAATAGTCTCACCACCCCTATTTTTCTTTTTTCTTTTTCTTTTTTTACGCATCAGGCATTGCGTATCGCATTGACGAAAGAGATTTCAATGCAACGTGGCTACTAAAAACAGTAAATAAACTTTTTAAATAAAGAATTGGTCCTACATTCTATAAACTACTACTCCAATATTGGAGTTAACTCTATACGTAATCTGGAAATTTCGTAAATAGTAGTAATTATAATAAAGTTAATTATATTTTATAGCTATAGTTTATATATTTAAGTGTTATAATTATCACTTAAATTATTTTATTGGTGATTTTGTATAATTTGCGCTTATATTTATTTAATTGAGTTATATTTGTATAAATTTGAAATAACGAATTGATACAAGCACAAGCATCTGAATTTTAAATAGTTACACAAATTATATTATACAAACGTTATACAAACTATGAATAGTACAAGATTTGAATTATACAAATTCAAAGACTTAGCCCATGTAATTATCGTTGAATGTTGATCGCGAGTGGTAATCAACAAAAACTATGACAATGATGACTAAGAATTAGTATATATTTACATAATCATGTAGTTTAAGAATTAGTATATATTTACATAATCATGTAGTTTAGTATTCCCTCCGTCCTAATTTTGCTTTTTCCTTTAATTTTACTTTCGTACTTCAAAATTACTTTGAGTTTACAATTTTATATCGATTCAAAACATTAAAATCTAAA</genome_strand>
        <mrna_strand>GAGAGAGCGTTTCTTACAGTGATCAAATCCAAACCAAACTCCATTAGGAAGAAACTTATCATACTTAAAGGTAATAGCAGGACGATCTGGACCGTAAACTTTGACGCTCTCCGGTTTCCAGCCGTCCGATCCAACTCTCTTCAAATTTAGGTAGCAGATCTCATAAATACAGGGGCCACGGATCTGAAAAGTATCAGTAGAACAGCTTTCGAATATCTTCGACGACGGATCATCTAGCTTTGGCGCGTGAACCTCAAAACCGTAAGAATCTCCAAAAGCAATACTGACTCTGTCTCTGGTGTATTTAGGTGAAGAACAGCTTGTTTTGATTGTCAATGTGTATGAGCAGCTTCTAGCAGCAGCAGCGGTGCTCTGATTGGTTTCGATGTAAATTAGGGGTTTTGTTGAAGTTGAAGTAATTGATTTTGCTTGAGAGAGACAGAAGAAGAAAGCCACTAAGCTGGGGAACACAAAGAGGTGAACACTCATCTTCATTATCACCATTTAATTTTGATTATTGTTGTTGACGAACTTTAATAGTCTCACCACCCCTATTTTTCTTTTTTCTTTTTCTTTTTTTACGCATCAGGCATTGCGTATCGCATTGACGAAAGAGATTTCAATGCAACGTGGCTACTAAAAACAGTAAATAAACTTTTTAAATAAAGAATTGGTCCTACATTCTATAAACTACTACTCCAATATTGGAGTTAACTCTATACGTAATCTGGAAATTTCGTAAATAGTAGTAATTATAATAAAGTTAATTATATTTTATAGCTATAGTTTATATATTTAAGTGTTATAATTATCACTTAAATTATTTTATTGGTGATTTTGTATAATTTGCGCTTATATTTATTTAATTGAGTTATATTTGTATAAATTTGAAATAACGAATTGATACAAGCACAAGCATCTGAATTTTAAATAGTTACACAAATTATATTATACAAACGTTATACAAACTATGAATAGTACAAGATTTGAATTATACAAATTCAAAGACTTAGCCCATGTAATTATCGTTGAATGTTGATCGCGAGTGGTAATCAACAAAAACTATGACAATGATGACTAAGAATTAGTATATATTTACATAATCATGTAGTTTAAGAATTAGTATATATTTACATAATCATGTAGTTTAGTATTCCCTCCGTCCTAATTTTGCTTTTTCCTTTAATTTTACTTTCGTACTTCAAAATTACTTTGAGTTTACAATTTTATATCGATTCAAAACATTAAAATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247893" ref_strand="+" ref_description="SGN-E247893 [cLEF-47-B17]">
      <seq>tagagagagcgtttcttacagtgatcaaatccaaaccaaactccattaggaagaaacttatcatacttaaaggtaatagcaggacgatctggaccgtaaactttgacgctctccggtttccagccgtccgatccaactctcttcaaatttaggtagcagatctcataaatacaggggccacggatctgaaaagtatcagtagaacagctttcgaatatcttcgacgacggatcatctagctttggcgcgtgaacctcaaaaccgtaagaatctccaaaagcaatactgactctgtctctggtgtatttaggtgaagaacagcttgttttgattgtcaatgtgtatgagcagcttctagcagcagcagcggtgctctgattggtttcgatgtaaattaggggttttgttgaagttgaagtaattgattttgcttgagagagacagaagaagaaagccactaagctggggaacacaaagaggtgaacactcatcttcattatcaccatttaattttgattattgttgttgacgaactttaatagtctcaccacccctatttttcttttttctttttctttttttacgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="72416" stop="71229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72116" g_stop="71529" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E247893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72116" e_stop="71529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAGCGTTTCTTACAGTGATCAAATCCAAACCAAACTCCATTAGGAAGAAACTTATCATACTTAAAGGTAATAGCAGGACGATCTGGACCGTAAACTTTGACGCTCTCCGGTTTCCAGCCGTCCGATCCAACTCTCTTCAAATTTAGGTAGCAGATCTCATAAATACAGGGGCCACGGATCTGAAAAGTATCAGTAGAACAGCTTTCGAATATCTTCGACGACGGATCATCTAGCTTTGGCGCGTGAACCTCAAAACCGTAAGAATCTCCAAAAGCAATACTGACTCTGTCTCTGGTGTATTTAGGTGAAGAACAGCTTGTTTTGATTGTCAATGTGTATGAGCAGCTTCTAGCAGCAGCAGCGGTGCTCTGATTGGTTTCGATGTAAATTAGGGGTTTTGTTGAAGTTGAAGTAATTGATTTTGCTTGAGAGAGACAGAAGAAGAAAGCCACTAAGCTGGGGAACACAAAGAGGTGAACACTCATCTTCATTATCACCATTTAATTTTGATTATTGTTGTTGACGAACTTTAATAGTCTCACCACCCCTATTTTTCTTTTTTCTTTTTCTTTTTTTACGCAT</genome_strand>
        <mrna_strand>TAGAGAGAGCGTTTCTTACAGTGATCAAATCCAAACCAAACTCCATTAGGAAGAAACTTATCATACTTAAAGGTAATAGCAGGACGATCTGGACCGTAAACTTTGACGCTCTCCGGTTTCCAGCCGTCCGATCCAACTCTCTTCAAATTTAGGTAGCAGATCTCATAAATACAGGGGCCACGGATCTGAAAAGTATCAGTAGAACAGCTTTCGAATATCTTCGACGACGGATCATCTAGCTTTGGCGCGTGAACCTCAAAACCGTAAGAATCTCCAAAAGCAATACTGACTCTGTCTCTGGTGTATTTAGGTGAAGAACAGCTTGTTTTGATTGTCAATGTGTATGAGCAGCTTCTAGCAGCAGCAGCGGTGCTCTGATTGGTTTCGATGTAAATTAGGGGTTTTGTTGAAGTTGAAGTAATTGATTTTGCTTGAGAGAGACAGAAGAAGAAAGCCACTAAGCTGGGGAACACAAAGAGGTGAACACTCATCTTCATTATCACCATTTAATTTTGATTATTGTTGTTGACGAACTTTAATAGTCTCACCACCCCTATTTTTCTTTTTTCTTTTTCTTTTTTTACGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713100" ref_strand="+" ref_description="SGN-E713100 [FB06CH06]">
      <seq>gaagatgagtgttcacctctttgtgttccccagcttagtggctttcttcttctgtctctctcaagcaaaatcaattacttcaacttcaacaaaacccctaatttacatcgaaaccaatcagagcaccgctgctgctgctagaagctgctcatacacattgacaatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagattcttacggttttgaggttcacgcgccaaagctagatgatccgtcgtcgaagatattcgaaagctgttctactgatacttttcagatccgtggcccctgtatttatgagatctgctacctaaatttgaagagagttggatcggacggctggaaaccggagagcgtcaaagtttacggtccagatcgtcctgctattacctttaagtatgataagtttcttcctaatggagtttggtttggatttgatcactgtaagaaacgctctctctaggaatatgttgtgtatgaaatttgctttttgcagatttaatccatgtatttaaatgtgttgtttggatacaatgaacatttggtacgatagcgttaatgggagacgatggtgaatgaagaggataaagtgccctgtactaatattttaaaaataactttgagttgtgaattagtttcaatatagtaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="71322" stop="72608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71622" g_stop="72319" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E713100" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71622" e_stop="72319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAGTGTTCACCTCTTTGTGTTCCCCAGCTTAGTGGCTTTCTTCTTCTGTCTCTCTCAAGCAAAATCAATTACTTCAACTTCAACAAAACCCCTAATTTACATCGAAACCAATCAGAGCACCGCTGCTGCTGCTAGAAGCTGCTCATACACATTGACAATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATTCTTACGGTTTTGAGGTTCACGCGCCAAAGCTAGATGATCCGTCGTCGAAGATATTCGAAAGCTGTTCTACTGATACTTTTCAGATCCGTGGCCCCTGTATTTATGAGATCTGCTACCTAAATTTGAAGAGAGTTGGATCGGACGGCTGGAAACCGGAGAGCGTCAAAGTTTACGGTCCAGATCGTCCTGCTATTACCTTTAAGTATGATAAGTTTCTTCCTAATGGAGTTTGGTTTGGATTTGATCACTGTAAGAAACGCTCTCTCTAGGAATATGTTGTGTATGAAATTTGCTTTTTGCAGATTTAATCCATGTATTTAAATGTGTTGTTTGGATACAATGAACATTTGGTACGATAGCGTTAATGGGAGACGATGGTGAATGAAGAGGATAAAGTGCCCTGTACTAATATTTTAAAAATAACTTTGAGTTGTGAATTAGTTTCAATATAGTAATTAAATCTGAATCAAT</genome_strand>
        <mrna_strand>GAAGATGAGTGTTCACCTCTTTGTGTTCCCCAGCTTAGTGGCTTTCTTCTTCTGTCTCTCTCAAGCAAAATCAATTACTTCAACTTCAACAAAACCCCTAATTTACATCGAAACCAATCAGAGCACCGCTGCTGCTGCTAGAAGCTGCTCATACACATTGACAATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATTCTTACGGTTTTGAGGTTCACGCGCCAAAGCTAGATGATCCGTCGTCGAAGATATTCGAAAGCTGTTCTACTGATACTTTTCAGATCCGTGGCCCCTGTATTTATGAGATCTGCTACCTAAATTTGAAGAGAGTTGGATCGGACGGCTGGAAACCGGAGAGCGTCAAAGTTTACGGTCCAGATCGTCCTGCTATTACCTTTAAGTATGATAAGTTTCTTCCTAATGGAGTTTGGTTTGGATTTGATCACTGTAAGAAACGCTCTCTCTAGGAATATGTTGTGTATGAAATTTGCTTTTTGCAGATTTAATCCATGTATTTAAATGTGTTGTTTGGATACAATGAACATTTGGTACGATAGCGTTAATGGGAGACGATGGTGAATGAAGAGGATAAAGTGCCCTGTACTAATATTTTAAAAATAACTTTGAGTTGTGAATTAGTTTCAATATAGTAATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321040" ref_strand="+" ref_description="SGN-E321040 [cTOB-13-H14]">
      <seq>tctcaagcaaaatcaattacttcaacttcaacaaaacccctaatttacatcgaaaccaatcagagcaccgctgctgctgctagaagctgctcatacacattgacaatcaaaacaagctgttcttcacctaaatacaccagagacagagtcagtattgcttttggagattcttacggttttgaggttcacgcgccaaagctagatgatccgtcgtcgaagatattcgaaagctgttctactgatacttttcagatccgtggcccctgtatttatgagatctgctacctaaatttgaagagagttggatcggacggctggaaaccggagagcgtcaaagtttacggtccagatcgtcctgctattacctttaagtatgataagtttcttcctaatggagtttggtttggatttgatcactgtaagaaacgctctctctaggaatatgttgtgtatgaaatttgctttttgcagatttaatccatgtatttaaatgtgttgtttggatacaatgaacatttggtacgatagcgttaatgggagacgatggtgaatgaagaggataaagtgccctgtactaatattttaaaaataactttgagttgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="71380" stop="72585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71680" g_stop="72284" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="SGN-E321040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71680" e_stop="72284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAGCAAAATCAATTACTTCAACTTCAACAAAACCCCTAATTTACATCGAAACCAATCAGAGCACCGCTGCTGCTGCTAGAAGCTGCTCATACACATTGACAATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATTCTTACGGTTTTGAGGTTCACGCGCCAAAGCTAGATGATCCGTCGTCGAAGATATTCGAAAGCTGTTCTACTGATACTTTTCAGATCCGTGGCCCCTGTATTTATGAGATCTGCTACCTAAATTTGAAGAGAGTTGGATCGGACGGCTGGAAACCGGAGAGCGTCAAAGTTTACGGTCCAGATCGTCCTGCTATTACCTTTAAGTATGATAAGTTTCTTCCTAATGGAGTTTGGTTTGGATTTGATCACTGTAAGAAACGCTCTCTCTAGGAATATGTTGTGTATGAAATTTGCTTTTTGCAGATTTAATCCATGTATTTAAATGTGTTGTTTGGATACAATGAACATTTGGTACGATAGCGTTAATGGGAGACGATGGTGAATGAAGAGGATAAAGTGCCCTGTACTAATATTTTAAAAATAACTTTGAGTTGTGA</genome_strand>
        <mrna_strand>TCTCAAGCAAAATCAATTACTTCAACTTCAACAAAACCCCTAATTTACATCGAAACCAATCAGAGCACCGCTGCTGCTGCTAGAAGCTGCTCATACACATTGACAATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATTCTTACGGTTTTGAGGTTCACGCGCCAAAGCTAGATGATCCGTCGTCGAAGATATTCGAAAGCTGTTCTACTGATACTTTTCAGATCCGTGGCCCCTGTATTTATGAGATCTGCTACCTAAATTTGAAGAGAGTTGGATCGGACGGCTGGAAACCGGAGAGCGTCAAAGTTTACGGTCCAGATCGTCCTGCTATTACCTTTAAGTATGATAAGTTTCTTCCTAATGGAGTTTGGTTTGGATTTGATCACTGTAAGAAACGCTCTCTCTAGGAATATGTTGTGTATGAAATTTGCTTTTTGCAGATTTAATCCATGTATTTAAATGTGTTGTTTGGATACAATGAACATTTGGTACGATAGCGTTAATGGGAGACGATGGTGAATGAAGAGGATAAAGTGCCCTGTACTAATATTTTAAAAATAACTTTGAGTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368379" ref_strand="-" ref_description="SGN-E368379 [TUS-23-J19]">
      <seq>tggatcaactgctattcatgttgcactggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaacgataagttaaagtacaagctttcttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacacagaattatggtatccgacacaatggatgaagttgctcaaaaatggcgccaacaagagaagcaacacaattcagaaagcactagggatcaaatgtcttttagagttagcatatacagaggccatcctgttatcaggagaagaactcattgcagtgaacctggcaaattaattacgcttccaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatgcatcgattacggatcaagaaggatcagaaattgactcaattgaagtaataagagataatgacaagctatttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtctgttaagatgcatatatcactaaagaactcagaagaaaaatgtatagtggacatacatttctttcctatttgtgtggcatattgagaacctattgcagtgatatatactcaaacttttgcctgaaaaaaaaaaaaaaaaaactgactagtctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74269" stop="72876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73969" g_stop="73605" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73457" g_stop="73177" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="646" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="665"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E368379" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368379" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73969" e_stop="73605"/>
          <exon e_start="73457" e_stop="73177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</genome_strand>
        <mrna_strand>TGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246253" ref_strand="-" ref_description="SGN-E246253 [cLEF-40-M23]">
      <seq>acgataagttaaagtacaagcttttttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacccagaattatggtatccgacccaatggatgaagttgctcaaaaatggcgcccacaagagaagccacccaattcagaaagccctagggatcaaatgtcttttagagttagcatatacagaggccatcctgttatcaggaaaaaaactcattgcagtgaacctggcaaattaattacgcttccaaattcacttgcagagctcaagatcattgcaggtcaaaaatttggatttgatgcaacaaatgcatcgatttcggatcaagaaggatcagaaattgactcaattgaagtaataagagataatgcccagctatttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtctgttaagatgcatatatcactaaagaactcagaagaaaaatgtatagtggacatacatttctttcctatttgtgtggcatattgagaacctattgcagtgatatatactcaaacttttgcctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74186" stop="72876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73886" g_stop="73605" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73457" g_stop="73177" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="563" r_length="281" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="592"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E246253" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73886" e_stop="73605"/>
          <exon e_start="73457" e_stop="73177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</genome_strand>
        <mrna_strand>ACGATAAGTTAAAGTACAAGCTTTTTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACCCAGAATTATGGTATCCGACCCAATGGATGAAGTTGCTCAAAAATGGCGCCCACAAGAGAAGCCACCCAATTCAGAAAGCCCTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAAAAAAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAAAAATTTGGATTTGATGCAACAAATGCATCGATTTCGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGCCCAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246294" ref_strand="-" ref_description="SGN-E246294 [cLEF-40-F11]">
      <seq>ctcaaaaatggcgccaacaagagaagcaacacaattcagaaagcactagggatcaaatgtcttttagagttagcatatacagaggccatcctgttatcaggagaagaactcattgcagtgaacctggcaaattaattacgcttccaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatgcatcgattacggatcaagaaggatcagaaattgactcaattgaagtaataagagataatgacaagctatttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtctgttaagatgcatatatcactaaagaactcagaagaaaaatgtatagtggacatacatttctttcctatttgtgtggcatattgagaacctattgcagtgatatatactcaaacttttgcctgaaaaaaaaaaaaaaaaaactgactagtctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74081" stop="72876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73781" g_stop="73605" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73457" g_stop="73177" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="458" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="477"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E246294" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246294" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73781" e_stop="73605"/>
          <exon e_start="73457" e_stop="73177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</genome_strand>
        <mrna_strand>CTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E234563" ref_strand="+" ref_description="SGN-E234563 [cLEL-6-M15](-)">
      <seq>agaaagcactagggatcaaatgtcttttagagttagcatatacagaggccatcctgttatcaggagaagaactcattgcagtgaacctggcaaattaattacgcttccaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatgcatcgattacggatcaagaaggatcagaaattgactcaattgaagtaataagagataatgacaagctatttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtctgttaagatgcatatatcactaaagaactcagaagaaaaatgtatagtggacatacatttctttcctatttgtgtggcatattgagaacctattgcagtgatatatactcaaacttttgcctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74044" stop="72876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73744" g_stop="73605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73457" g_stop="73177" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="421" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="440"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E234563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73744" e_stop="73605"/>
          <exon e_start="73457" e_stop="73177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</genome_strand>
        <mrna_strand>AGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235235" ref_strand="+" ref_description="SGN-E235235 [cLEL-6-M15](-)">
      <seq>cagtgaacctggcaaattaattacgcttccaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatgcatcgattacggatcaagaaggatcagaaattgactcaattgaagtaataagagataatgacaagctatttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtctgttaagatgcatatatcactaaagaactcagaagaaaaatgtatagtggacatacatttctttcctatttgtgtggcatattgagaacctattgcagtgatatatactcaaacttttgcctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="73966" stop="72876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73666" g_stop="73605" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73457" g_stop="73177" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="343" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="362"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E235235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73666" e_stop="73605"/>
          <exon e_start="73457" e_stop="73177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</genome_strand>
        <mrna_strand>CAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379089" ref_strand="+" ref_description="SGN-E379089 [TUS-1-G3](-)">
      <seq>tgcacagcagctagaaaaaatgacttaacagtgatgaaagaactcctaaaacatggattacaagtgacttcgaaggaccgcgatggatcaactgctattcatgttgcactggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaacgataagttaaagtacaagctttcttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacacagaattatggtatccgacacaatggatgaagttgctcaaaaatggcgccaacaagagaagcaacacaattcagaaagcactagggatcaaatgtcttttagagttagcatatacagaggccatcctgttatcaggagaagaactcattgcagtgaacctggcaaattaattacgcttccaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatgcatcgattacggatcaagaaggatcagaaattgactcaattgaagtaataagagataatgacaagctatttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtctgttaagatgcatatatcactaaagaactcagaagaaaaatgtatagtggacatacatttctttcctatttctgtggcatcagagaacctatgcagtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74352" stop="72896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74052" g_stop="73605" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73457" g_stop="73196" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="708" r_length="260" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E379089" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74052" e_stop="73605"/>
          <exon e_start="73457" e_stop="73196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATAT</genome_strand>
        <mrna_strand>TGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTGACTTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTCTGTGGCAT-CAGAGAACCTA-TGCAGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368378" ref_strand="-" ref_description="SGN-E368378 [TUS-23-J19](-)">
      <seq>aaacatgtatgttaacttgctaactgttgctagtacaggtaatgctactttccttgaagaacttctcaaggctaaattagatcctgatatcggagacgctcaaggaagaactccactgcacattgcagcatcgaaagggcatgaagagtgtgtcatggtgcttcttagacatggatgcaacataaatctccgagatgtaaatggtcacaccgcgttgtgggaagctatagcagcaaaacaccattcaacatttcacgtgttgtaccattgggcttccgtctccgatccctacattgctggtgacctcttatgcacagcagctagaaaaaatgacttaacagtgatgaaagaactcctaaaacatggattacaagttgactcgaaggaccgcgatggatcaactgctattcatgttgcactggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaacgataagttaaagtacaagctttcttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacacagaattatggtatccgacacaatggatgaagttgctcaaaaatggcgccaacaagagaagcaacacaattcagaaagcactagggatcaaatgtcttttagagttagcatatacagaggccatcctgttatcaggagaagaactcattgcagtgaacctggcaaattaattacgctttcaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74903" stop="73128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="74486" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74485" i_stop="74346" i_length="140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74345" g_stop="74270" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="194" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74269" i_stop="74169" i_length="101">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74168" g_stop="73605" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="758" r_length="564" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73457" g_stop="73428" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="788" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E368378" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368378" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="74486"/>
          <exon e_start="74345" e_stop="74270"/>
          <exon e_start="74168" e_stop="73605"/>
          <exon e_start="73457" e_stop="73428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGAAAAGATTTAGTTTTCATTTACATGTTTGTGATGCCAATAACATTGTTTTCTCTTTCAAACAGTTTATGACATGATTATGTTTCTCTTTCTGATGCATCAGCACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAGGTAGTCATCCTGAATATGTATTATTGTAAACTTCAGCAAGCTTGAATGATTGACCGGGATAATTGGCTAATCATTGAGTTGATTTGTACCATAAAAAGCAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATG</genome_strand>
        <mrna_strand>AAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTG............................................................................................................................................CACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAG.....................................................................................................ATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTTCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262046" ref_strand="+" ref_description="SGN-E262046 [cLEG-58-J12]">
      <seq>aagaacttccttcagcatcataagaagctcaaaggcttaaggcttggagatttacttcatggagtggggggagattatggtgatccaaacatgtatgttaacttgctaactgttgctagtacaggtaatgctactttccttgaagaacttctcaaggctaaattagatcctgatatcggagacgctcaaggaagaactccactgcacattgcagcatcgaaagggcatgaagagtgtgtcatggtgcttcttagacatggatgcaacataaatctccgagatgtaaatggtcacaccgcgttgtgggaagctatagcagcaaaacaccattcaacatttcacgtgttgtaccattgggcttccgtctccgatccctacattgctggtgacctcttatgcacagcagctagaaaaaatgacttaacagtgatgaaagaactcctaaaacatggattacaagttgactcgaaggaccgcgatggatcaactgctattcatgttgcactggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaacgataagttaaagtacaagctttcttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacacagaattatggtatccgacacaatggatgaagttgctcaaaaatggcgccaacaagagaagcaacacaattcagaaagcactagggatcaaatgtcttttagagttagcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74980" stop="73403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74779" g_stop="74765" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74674" g_stop="74486" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="204" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74485" i_stop="74346" i_length="140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74345" g_stop="74270" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="280" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74269" i_stop="74169" i_length="101">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74168" g_stop="73703" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="746" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E262046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74779" e_stop="74765"/>
          <exon e_start="74674" e_stop="74486"/>
          <exon e_start="74345" e_stop="74270"/>
          <exon e_start="74168" e_stop="73703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGAAAAGATTTAGTTTTCATTTACATGTTTGTGATGCCAATAACATTGTTTTCTCTTTCAAACAGTTTATGACATGATTATGTTTCTCTTTCTGATGCATCAGCACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAGGTAGTCATCCTGAATATGTATTATTGTAAACTTCAGCAAGCTTGAATGATTGACCGGGATAATTGGCTAATCATTGAGTTGATTTGTACCATAAAAAGCAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATA</genome_strand>
        <mrna_strand>AAGAACTTCCTTCAG..........................................................................................CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTG............................................................................................................................................CACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAG.....................................................................................................ATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299299" ref_strand="+" ref_description="SGN-E299299 [cLET-43-N13]">
      <seq>cagatgtaaatggtcacaccgcgttgtgggaagctatagcagcaaaacaccattcaacatttcacgtgttgtaccattgggcttccgtctccgatccctacattgctggtgacctcttatgcacagcagctagaaaaaatgacttaacagtgatgaaagaactcctaaaacatggattacaagttgactcgaaggaccgcgatggatcaactgctattcatgttgcactggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaacgataagttaaagtacaagctttcttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacacagaactatggtatccgacacaatggatgaagttgctcaaaaatggcgccaacaagagaagcaacacaattcagaaagcactagggatcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74471" stop="73423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74171" g_stop="73723" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E299299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74171" e_stop="73723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATG</genome_strand>
        <mrna_strand>CAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAACTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262659" ref_strand="+" ref_description="SGN-E262659 [cLEG-63-A9]">
      <seq>aagaacttccttcagcatcataagaagctcaaaggcttaaggcttggagatttacttcatggagtggggggagattatggtgatccaaacatgtatgttaacttgctaactgttgctagtacaggtaatgctactttccttgaagaacttctcaaggctaaattagatcctgatatcggagacgctcaaggaagaactccactgcacattgcagcatcgaaagggcatgaagagtgtgtcatggtgcttcttagacatggatgcaacataaatctccgagatgtaaatggtcacaccgcgttgtgggaagctatagcagcaaaacaccattcaacatttcacgtgttgtaccattgggcttccgtctccgatccctacattgctggtgacctcttatgcacagcagctagaaaaaatgacttaacagtgatgaaagaactcctaaaacatggattacaagttgactcgaaggaccgcgatggatcaactgctattcatgttgcactggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaacgataagttaaagtacaagctttcttcaatgaacctaaatgacatgctacaaaagcgcgaagtaggacacagaattatggtatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="74980" stop="73500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74779" g_stop="74765" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74674" g_stop="74486" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="204" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74485" i_stop="74346" i_length="140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74345" g_stop="74270" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="280" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74269" i_stop="74169" i_length="101">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74168" g_stop="73800" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="649" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E262659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74779" e_stop="74765"/>
          <exon e_start="74674" e_stop="74486"/>
          <exon e_start="74345" e_stop="74270"/>
          <exon e_start="74168" e_stop="73800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGAAAAGATTTAGTTTTCATTTACATGTTTGTGATGCCAATAACATTGTTTTCTCTTTCAAACAGTTTATGACATGATTATGTTTCTCTTTCTGATGCATCAGCACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAGGTAGTCATCCTGAATATGTATTATTGTAAACTTCAGCAAGCTTGAATGATTGACCGGGATAATTGGCTAATCATTGAGTTGATTTGTACCATAAAAAGCAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCG</genome_strand>
        <mrna_strand>AAGAACTTCCTTCAG..........................................................................................CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTG............................................................................................................................................CACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAG.....................................................................................................ATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379064" ref_strand="+" ref_description="SGN-E379064 [TUS-1-G3]">
      <seq>attgattgaacagcttcccaagacaatttgcaaaagcataaggcaccatttgtttttaccaacagtggagaaagtttatctttttaaaggtgtcacaaaggaaattctgttacttttggttgcagatatgaaggctgagtacatacctccaagagaggatgtaataatgcagaacgaatcaccagacgagttgtacatcatagtgtcaggggaggtggaaatgattgaatctgaaatggagaatgagccaactgtttggactttcaaatctggagatatgataggagaagtaggggcattgtgttgtagacctcagagctacacgtatcgaaccaaaacactttcacagctcttgaagataagaactagtaatttgattgaagcaatgaaaaccagacaagaagataatatcatcatgatcaagaacttccttcagcatcataagaagctcaaaggcttaaggcttggagatttacttcatggagtggggggagattatggtgatccaaacatgtatgttaacttgctaactgttgctagtacaggtaatgctactttccttgaagaacttctcaaggctaaattagatcctgatatcggagacgctcaaggaagaactccactgcacattgcagcatcgaaagggcatgaagagtgtgtcatgctgcttcttagacatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="75577" stop="73987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75277" g_stop="75160" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75159" i_stop="75083" i_length="77">
            <donor d_prob="0.332" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75082" g_stop="74765" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="436" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74674" g_stop="74486" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="625" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74485" i_stop="74346" i_length="140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74345" g_stop="74287" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="684" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E379064" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75277" e_stop="75160"/>
          <exon e_start="75082" e_stop="74765"/>
          <exon e_start="74674" e_stop="74486"/>
          <exon e_start="74345" e_stop="74287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTGGTAAGACATAACTTTTGTTAGAAAATGGTTTTAGTATACATGTATAATTGTGTGTGTTCTAATTGATGAATCTACAGGTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGAAAAGATTTAGTTTTCATTTACATGTTTGTGATGCCAATAACATTGTTTTCTCTTTCAAACAGTTTATGACATGATTATGTTTCTCTTTCTGATGCATCAGCACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATG</genome_strand>
        <mrna_strand>ATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTG.............................................................................GTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAG..........................................................................................CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTG............................................................................................................................................CACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGCTGCTTCTTAGACATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375959" ref_strand="+" ref_description="SGN-E375959 [TUS-40-G10](-)">
      <seq>tcagggctgagagtctaaaccagcaggaattgattgaacagcttcccaagacaatttgcaaaagcataaggcaccatttgtttttaccaacagtggagaaagtttatctttttaaaggtgtcacaaaggaaattctgttacttttggttgcagatatgaaggctgagtacatacctccaagagaggatgtaataatgcagaacgaatcaccagacgagttgtacatcatagtgtcaggggaggtggaaatgattgaatctgaaatggagaatgagccaactgtttggactttcaaatctggagatatgataggagaagtaggggcattgtgttgtagacctcagagctacacgtatcgaaccaaaacactttcacagctcttgaagataagaactagtaatttgattgaagcaatgaaaaccagacaagaagataatatcatcatgatcaagaacttccttcagcatcataagaagctcaaaggcttaaggcttggagatttacttcatggagtggggggagattatggtgatccaaacatgtatgttaacttgctaactgttgctagtacaggtaatgctactttccttgaagaacttctcaaggctaaattagatcctgatatcggagacgctcaaggaagaactccactggtacgtcccctcgtggcctacgtttatactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="75605" stop="74145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75305" g_stop="75160" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75159" i_stop="75083" i_length="77">
            <donor d_prob="0.332" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75082" g_stop="74765" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="464" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74674" g_stop="74446" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="693" r_length="229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E375959" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75305" e_stop="75160"/>
          <exon e_start="75082" e_stop="74765"/>
          <exon e_start="74674" e_stop="74446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGGCTGAGAGTCTAAACCAGCAGGAATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTGGTAAGACATAACTTTTGTTAGAAAATGGTTTTAGTATACATGTATAATTGTGTGTGTTCTAATTGATGAATCTACAGGTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGA</genome_strand>
        <mrna_strand>TCAGGGCTGAGAGTCTAAACCAGCAGGAATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTG.............................................................................GTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAG..........................................................................................CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201454" ref_strand="+" ref_description="SGN-E201454 [cLEC-4-I19]">
      <seq>attgattgaacagcttcccaagacaatttgcaaaagcataaggcaccatttgtttttaccaacagtggagaaagtttatctttttaaaggtgtcacaaaggaaattctgttacttttggttgcagatatgaaggctgagtacatacctccaagagaggatgtaataatgcagaacgaatcaccagacgagttgtacatcatagtgtcaggggaggtggaaatgattgaatctgaaatggagaatgagccaactgtttggactttcaaatctggagatatgataggagaagtaggggcattgtgttgtagacctcagagctacacgtatcgaaccaaaacactttcacagctcttgaagataagaactagtaatttgattgaagcaatgaaaaccagacaagaagataatatcatcatgatcaagaacttccttcagcatcataagaagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="75577" stop="74358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75277" g_stop="75160" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75159" i_stop="75083" i_length="77">
            <donor d_prob="0.332" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75082" g_stop="74765" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="436" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74674" g_stop="74658" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="453" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E201454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75277" e_stop="75160"/>
          <exon e_start="75082" e_stop="74765"/>
          <exon e_start="74674" e_stop="74658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTGGTAAGACATAACTTTTGTTAGAAAATGGTTTTAGTATACATGTATAATTGTGTGTGTTCTAATTGATGAATCTACAGGTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCAA</genome_strand>
        <mrna_strand>ATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTG.............................................................................GTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAG..........................................................................................CATCATAAGAAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375960" ref_strand="+" ref_description="SGN-E375960 [TUS-40-G10]">
      <seq>ttcacaaaaaacatgattgttgaagatagcaagaaagagcaacatgttgtacaagatgataatagccatgggagtagcaattcagctactccatcagatgatcttagttttcgaaacttatcgaagctcattctccctcctcttggttccaatgattccaacacaaatcaaactcacgagaaaggatttatcatcactcctatggattcaagatacaggtgttgggagagtttaatggtaataatggtggcatattctgcatgggtatgtccatttgagatagcattcatgcactccaatccaaacacagctttatacataacagacaacgttgttgatatcttctttgctgctgatatcttcttaactttctttgttgcttatattgatgctacaactcaactccttgtacgtgacaggagaaaaattgctataaggtacgtaacatagactctcaatctgatttgatttgatacagagattaagatattaaatgataattttcaattttataattctaaattaaagttatgttaaatgtattaaaataccatttaatcttgcatagctttaaacatgttgaaagttaaagttaatatattacaaaaaaaaattatcattcttttctaacaactaaaaaagaaagtagatcattctttttcaaatgaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="78948" stop="77123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78648" g_stop="78431" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78430" i_stop="77878" i_length="553">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77877" g_stop="77423" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="674" r_length="456" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E375960" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78648" e_stop="78431"/>
          <exon e_start="77877" e_stop="77423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTTTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAGGTTCGTAGAATTAATAAAGAGTTTAAATTCTATATACTGACAATAGATAAAAATAATTCTATATATCAATATGTTATTTAACTAATTAAGAAGAAAGAGAAAAAAAAAAGTTGTAGATTTTGTTTAATTACACTTTTTTGCAATTTCTGATAGTATGTGCCAACTATTAAAAGCTTTTCTTTATGGATTGTCATTCCTAAAATAGAAATTTCTAGAGCTACCGTTAAAATTAATTTCTTAAATAAAAAACCGACAAATACTTTTAGGCATCAAAAAAATCATCACTATGGTAGGTAATTATATTGATTAAAAAATAATTGACCATGGTCTTATAGGGTAATCTATGTTACATACATGTGCGATGGTTGTCTTACTTGATATTTATCGAAGATAGTTCTTCTATCTTATCAAGACGGGGTAAGGCTATACACACATCATCTTTCTCAAATTTTAATTATGAAATTACACTGAATATGTTATTATTATCTTAATACACATGGCCCACGTGGGGCGTAAATTCCTTTAACTAATGGATGTGTAAATATATATGTAGGTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGTACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTTCAATTTTATAATTCTAAATTAAAGTTATGTTAAATGTATTAAAATACCATTTAATCTTGCATAGCTTTAAACATGTTGAAAGTTAAAGTTAATATATTAC-AAAAAAAATTATCATTC-TTTCTAACAAACTAAAAAAGAAAGTAGATCATTCTTTTTCAAATGAAAGGAG</genome_strand>
        <mrna_strand>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTTTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGTACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTTCAATTTTATAATTCTAAATTAAAGTTATGTTAAATGTATTAAAATACCATTTAATCTTGCATAGCTTTAAACATGTTGAAAGTTAAAGTTAATATATTACAAAAAAAAATTATCATTCTTTTCTAAC-AACTAAAAAAGAAAGTAGATCATTCTTTTTCAAATGAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319261" ref_strand="+" ref_description="SGN-E319261 [cTOB-16-A10]">
      <seq>ttcacaaaaaacatgattgttgaagatagcaagaaagagcaacatgttgtacaagatgataatagccatgggagtagcaattcagctactccatcagatgatcttagttttcgaaacttatcgaagctcattctccctcctcttggttccaatgattccaacacaaatcaaactcacgagaaaggatttatcatcactcctatggattcaagatacaggtgttgggagagtttaatggtaataatggtggcatattctgcatgggtatgtccatttgagatagcattcatgcactccaatccaaacacagctttatacataacagacaacgttgttgatatcttctttgctgctgatatcttcttaactttctttgttgcttatattgatgctacaactcaactccttgtacgtgacaggagaaaaattgctataaggtacgtaacatagactctcaatctgatttgatttgatacagagattaagatattaaatgataattttcaattttataattctaaattaaagttatgttaaatgtattaaaataccatttaatcttgcatagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="78948" stop="77224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78648" g_stop="78431" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78430" i_stop="77878" i_length="553">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77877" g_stop="77524" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="572" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E319261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78648" e_stop="78431"/>
          <exon e_start="77877" e_stop="77524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTTTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAGGTTCGTAGAATTAATAAAGAGTTTAAATTCTATATACTGACAATAGATAAAAATAATTCTATATATCAATATGTTATTTAACTAATTAAGAAGAAAGAGAAAAAAAAAAGTTGTAGATTTTGTTTAATTACACTTTTTTGCAATTTCTGATAGTATGTGCCAACTATTAAAAGCTTTTCTTTATGGATTGTCATTCCTAAAATAGAAATTTCTAGAGCTACCGTTAAAATTAATTTCTTAAATAAAAAACCGACAAATACTTTTAGGCATCAAAAAAATCATCACTATGGTAGGTAATTATATTGATTAAAAAATAATTGACCATGGTCTTATAGGGTAATCTATGTTACATACATGTGCGATGGTTGTCTTACTTGATATTTATCGAAGATAGTTCTTCTATCTTATCAAGACGGGGTAAGGCTATACACACATCATCTTTCTCAAATTTTAATTATGAAATTACACTGAATATGTTATTATTATCTTAATACACATGGCCCACGTGGGGCGTAAATTCCTTTAACTAATGGATGTGTAAATATATATGTAGGTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGTACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTTCAATTTTATAATTCTAAATTAAAGTTATGTTAAATGTATTAAAATACCATTTAATCTTGCATAGCTTT</genome_strand>
        <mrna_strand>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTTTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGTACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTTCAATTTTATAATTCTAAATTAAAGTTATGTTAAATGTATTAAAATACCATTTAATCTTGCATAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319263" ref_strand="+" ref_description="SGN-E319263 [cTOB-16-A22]">
      <seq>ttcacaaaaaacatgattgttgaagatagcaagaaagagcaacatgttgtacaagatgataatagccatgggagtagcaattcagctactccatcagatgatcttagttgtcgaaacttatcgaagctcattctccctcctcttggttccaatgattccaacacaaatcaaactcacgagaaaggatttatcatcactcctatggattcaagatacaggtgttgggagagtttaatggtaataatggtggcatattctgcatgggtatgtccatttgagatagcattcatgcactccaatccaaacacagctttatacataacagacaacgttgttgatatcttctttgctgctgatatcttcttaactttctttgttgcttatattgatgctacaactcaactccttgtacgtgacaggagaaaaattgctataagggacgtaacatagactctcaatctgatttgatttgatacagagattaagatattaaatgataatttgcaattttataattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="78948" stop="77277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78648" g_stop="78431" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78430" i_stop="77878" i_length="553">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77877" g_stop="77577" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="519" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E319263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78648" e_stop="78431"/>
          <exon e_start="77877" e_stop="77577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTTTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAGGTTCGTAGAATTAATAAAGAGTTTAAATTCTATATACTGACAATAGATAAAAATAATTCTATATATCAATATGTTATTTAACTAATTAAGAAGAAAGAGAAAAAAAAAAGTTGTAGATTTTGTTTAATTACACTTTTTTGCAATTTCTGATAGTATGTGCCAACTATTAAAAGCTTTTCTTTATGGATTGTCATTCCTAAAATAGAAATTTCTAGAGCTACCGTTAAAATTAATTTCTTAAATAAAAAACCGACAAATACTTTTAGGCATCAAAAAAATCATCACTATGGTAGGTAATTATATTGATTAAAAAATAATTGACCATGGTCTTATAGGGTAATCTATGTTACATACATGTGCGATGGTTGTCTTACTTGATATTTATCGAAGATAGTTCTTCTATCTTATCAAGACGGGGTAAGGCTATACACACATCATCTTTCTCAAATTTTAATTATGAAATTACACTGAATATGTTATTATTATCTTAATACACATGGCCCACGTGGGGCGTAAATTCCTTTAACTAATGGATGTGTAAATATATATGTAGGTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGTACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTTCAATTTTATAATTCT</genome_strand>
        <mrna_strand>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTGTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGGACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTGCAATTTTATAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712784" ref_strand="+" ref_description="SGN-E712784 [FB05DC05]">
      <seq>agaacccaagcttcagggcgccaagaggattgtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacaccccttcttatcggatacattcactttgtggtgcatctcagctgccattgtaaaaaggctaagaacagtgtctgttgagattgtcaattgaggcagagacttagaaaaattgattagctaaggcggccttaaatgcacgtttacgtaccaattttgcaatttgatctgcccttagttgttagtagagaggcagacttgacatctcatatggatagatagctgcagaagattcttggtaatatatcatacttactatgtgctactctccacagattgggcagttaggaaacaactttcaagatcttttattgttgaaagttggaacattctgcatttttgatatgtaacattgaggtctcacctacattccagtaacttttaaaggtttgagcagttaaattctacatccctccccaacctatgtcagtgggaatcaacacgtacagtcaatttgaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="82594" stop="81312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82415" g_stop="82400" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82285" g_stop="81612" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="689" r_length="673" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="704"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E712784" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82415" e_stop="82400"/>
          <exon e_start="82285" e_stop="81612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATTACTACATCCCTCCCCAACCTATGTCAGTGGGAATCAACACGTACAGTCAATTTGAACAAA</genome_strand>
        <mrna_strand>AGAACCCAAGCTTCAG..................................................................................................................GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATT-CTACATCCCTCCCCAACCTATGTCAGTGGGAATCAACACGTACAGTCAATTTGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715938" ref_strand="+" ref_description="SGN-E715938 [FB15CG03]">
      <seq>gaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacaccccttcttatcggatacattcactttgtggtgcatctcagctgccattgtaaaaaggctaagaacagtgtctgttgagattgtcaattgaggcagagacttagaaaaattgattagctaaggcggccttaaatgcacgtttacgtaccaattttgcaatttgatctgcccttagttgttagtagagaggcagacttgacatctcatatggatagatagctgcagaagattcttggtaatatatcatacttactatgtgctactctccacagattgggcagttaggaaacaactttcaagatcttttattgttgaaagttggaacattctgcatttttgatatgtaacattgaggtctcacctacattccagtaacttttaaaggtttgagcagttaaattanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="82510" stop="81366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82210" g_stop="81656" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E715938" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82210" e_stop="81656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATTACTACATCCCTCCCCA</genome_strand>
        <mrna_strand>GAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATTANAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549723" ref_strand="+" ref_description="SGN-E549723 [TUS-6-P6](-)">
      <seq>aggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacacccattcttatcggatacattcacttggtggtgcatctcagctgccattgtaaaaaggctaagaacagtgtctgttgagattgtcaattgaggcagagacttagaaaaattgattagctaaggcggccttaaatgcgcgtttacgtaccaattctgcaatttgatctgcccttagttgttagtagagaggcagacttgacatctcatatggatagatagctgcagaagattcttggtaatatatcatacttactatgtgctactgtccacagattgggcagttaggaaacaactctcaagatcttttattgttgaaagttggggcattctgcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="82488" stop="81436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82188" g_stop="81736" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E549723" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82188" e_stop="81736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTT</genome_strand>
        <mrna_strand>AGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCATTCTTATCGGATACATTCACTTGGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCGCGTTTACGTACCAATTCTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTGTCCACAGATTGGGCAGTTAGGAAACAACTCTCAAGATCTTTTATTGTTGAAAGTTGGGGCATTCTGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703998" ref_strand="+" ref_description="SGN-E703998 [FA23AC09]">
      <seq>tatcgtttttggaaacaaggcttctggaaagagcatttacgaggaagaccatatcatattagtgctctatatgttgtcgatctgcttaaattccgggagactgctgctggagataatttacgagtgttttatgagacactgagcaaggatccaaacagtctttcaaatctggatcaggatctcccaaactatgctcagcatactgtacccatcttttcactcccacaagaatggctttggtgtgagtcatggtgtggtaatgcaacaaagcccaaggcaaaaacaatagacctctgcaataatcccatgacaaaagaacccaagcttcagggcgccaagaggattgtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacaccccttcttatcggatacattcactttgtggtgcatctcagctgccattgtaaaaaggctaagaacagtgtctgttgagattgtcaattgaggcagagacttagaaaaattgattagctaaggcggccttaaatgcacgtttacgtaccaattttgcaatttgatctgcccttagttgttagtagagaggcagacttgacatctcatatggatagatagctgcagaagattcttggtaatatatcatacttactatgtgctactctccacagattgggcagttaggaaacactttcaagatcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="83824" stop="81463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83623" g_stop="83606" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83605" i_stop="83508" i_length="98">
            <donor d_prob="0.910" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83507" g_stop="83464" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="62" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83370" g_stop="83256" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="177" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82552" g_stop="82400" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="330" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82285" g_stop="81763" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="852" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E703998" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83623" e_stop="83606"/>
          <exon e_start="83507" e_stop="83464"/>
          <exon e_start="83370" e_stop="83256"/>
          <exon e_start="82552" e_stop="82400"/>
          <exon e_start="82285" e_stop="81763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGTTTTTGGAAACAAGTATCGGCATTTCTTTCTATTCACTTCTCTTTCTGCTCACTCATTGTCCTTTTAACTGACTAAGCTGATCACTAATGTTCTTTGTATTTATTGAATAGGGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAGGTATCCTTACCTCTTATATGTTGAATCACATATATAATAATTGTTAGTTATTTGAAAAGTGAACAAGCTTTCCATGGTGAATGCAATCTGCAGTGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAGGCAAGTGAATGCTTTCATGTGCAATCATCATATCATTCTACAACGCTGGCTCATCTTAAGTATTTCCTTTTTTGTGTTTTGACTTACTTGAAGCAAGAATGTGTTGGTTCTGAGGGTACACAATTTCTTTGCATTGTACTTGGTGCTTTCTGCTAGTGTACGTACTGGAAGTAGATTCTTCATTCTTTTATAATTTTATAATCGGCTATCTTTCCAGTTTGATTTCTTCATTTTAGATTAGAGAACTTCAGAAAATATAAAAAACTATTATTTATAAATGGAGATAGTTAAACATGATTATCCTGTCCTAGCGGAGGCCTGATATGCCTTCTTTATATTTGAATTTTTTCGTCCAGCAACTTAAAACTAGTAAGTCTTGCTGTTGCATAGTGATTACAGTGGTTATATTCAGTATGTATTAATTGGTAAATGGACGACAACCAAGTAGACCTGGCATAAGTTATGTCAATGACAACTTACACCATGCATATGTTATGGTAAAGTTCGGAATCTGTCCAAGCATTTCAGGGAAGTTCCATAGTTTACAATCAATATACTTTCCTGATAAAATTTCTCTGGAACCTACATTTCAATATAAGTGGTCAAGACATTGCCACCAAGCTTTAAGGTTTCCATAATATGATGATTATATTGCTCTTTACTTTTATATTGTGTTATACTGACAAGAATCCTTGTATCTCAGGATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATT</genome_strand>
        <mrna_strand>TATCGTTTTTGGAAACAA..................................................................................................GGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAG.............................................................................................TGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG..................................................................................................................GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAAC-ACTTTCAAGATCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322679" ref_strand="+" ref_description="SGN-E322679 [cTOB-26-D13]">
      <seq>gtcgatctgcttaaattccgggagactgctgctggagataatttacgagtgttttatgagacactgagcaaggatccaaacagtctttcaaatctggatcaggatctcccaaactatgctcagcatactgtacccatcttttcactcccacaagaatggctttggtgtgagtcatggtgtggtaatgcaacaaagcccaaggcaaaaacaatagacctctgcaataatcccatgacaaaagaacccaagcttcagggcgccaagaggattgtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacaccccttcttatcggatacattcactttgtggtgcatctcagctgccattgtaaaaaggctaagaacagtgtctgttgagattgtcaattgaggcagagacttagaaaattngattagctaaaggcggcttaaatgcacgtttacgtaccaattttgcaatttgatctgccccttagtgttagtagagaggcagacttgacatctcatatggatagatagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="83657" stop="81550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83357" g_stop="83256" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82552" g_stop="82400" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="255" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82285" g_stop="81850" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="691" r_length="436" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E322679" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83357" e_stop="83256"/>
          <exon e_start="82552" e_stop="82400"/>
          <exon e_start="82285" e_stop="81850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAGGCAAGTGAATGCTTTCATGTGCAATCATCATATCATTCTACAACGCTGGCTCATCTTAAGTATTTCCTTTTTTGTGTTTTGACTTACTTGAAGCAAGAATGTGTTGGTTCTGAGGGTACACAATTTCTTTGCATTGTACTTGGTGCTTTCTGCTAGTGTACGTACTGGAAGTAGATTCTTCATTCTTTTATAATTTTATAATCGGCTATCTTTCCAGTTTGATTTCTTCATTTTAGATTAGAGAACTTCAGAAAATATAAAAAACTATTATTTATAAATGGAGATAGTTAAACATGATTATCCTGTCCTAGCGGAGGCCTGATATGCCTTCTTTATATTTGAATTTTTTCGTCCAGCAACTTAAAACTAGTAAGTCTTGCTGTTGCATAGTGATTACAGTGGTTATATTCAGTATGTATTAATTGGTAAATGGACGACAACCAAGTAGACCTGGCATAAGTTATGTCAATGACAACTTACACCATGCATATGTTATGGTAAAGTTCGGAATCTGTCCAAGCATTTCAGGGAAGTTCCATAGTTTACAATCAATATACTTTCCTGATAAAATTTCTCTGGAACCTACATTTCAATATAAGTGGTCAAGACATTGCCACCAAGCTTTAAGGTTTCCATAATATGATGATTATATTGCTCTTTACTTTTATATTGTGTTATACTGACAAGAATCCTTGTATCTCAGGATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCT-AAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGC</genome_strand>
        <mrna_strand>GTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG..................................................................................................................GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAATTNGATTAGCTAAAGGCGG-CTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCCTTAGTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391873" ref_strand="+" ref_description="SGN-E391873 [TUS-24-I13]">
      <seq>gaagaccatatcatattagtgctctatatgttgtcgatctgcttaaattccgggagactgctgctggagataatttacgagtgttttatgagacactgagcaaggatccaaacagtctttcaaatctggatcaggatctcccaaactatgctcagcatactgtacccatcttttcactcccacaagaatggctttggtgtgagtcatggtgtggtaatgcaacaaagcccaaggcaaaaacaatagacctctgcaataatcccatgacaaaagaacccaagcttcagggcgccaagaggattgtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacagggggggggggcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttaaacaccccttcttatcggatacattcactttgtggtgcatctcaactgccattgtaaaaaggctaaaaacattttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="83782" stop="81700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83482" g_stop="83464" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83370" g_stop="83256" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="134" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82552" g_stop="82400" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="287" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82285" g_stop="81998" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="574" r_length="287" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E391873" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83482" e_stop="83464"/>
          <exon e_start="83370" e_stop="83256"/>
          <exon e_start="82552" e_stop="82400"/>
          <exon e_start="82285" e_stop="81998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACCATATCATATTAGGTATCCTTACCTCTTATATGTTGAATCACATATATAATAATTGTTAGTTATTTGAAAAGTGAACAAGCTTTCCATGGTGAATGCAATCTGCAGTGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAGGCAAGTGAATGCTTTCATGTGCAATCATCATATCATTCTACAACGCTGGCTCATCTTAAGTATTTCCTTTTTTGTGTTTTGACTTACTTGAAGCAAGAATGTGTTGGTTCTGAGGGTACACAATTTCTTTGCATTGTACTTGGTGCTTTCTGCTAGTGTACGTACTGGAAGTAGATTCTTCATTCTTTTATAATTTTATAATCGGCTATCTTTCCAGTTTGATTTCTTCATTTTAGATTAGAGAACTTCAGAAAATATAAAAAACTATTATTTATAAATGGAGATAGTTAAACATGATTATCCTGTCCTAGCGGAGGCCTGATATGCCTTCTTTATATTTGAATTTTTTCGTCCAGCAACTTAAAACTAGTAAGTCTTGCTGTTGCATAGTGATTACAGTGGTTATATTCAGTATGTATTAATTGGTAAATGGACGACAACCAAGTAGACCTGGCATAAGTTATGTCAATGACAACTTACACCATGCATATGTTATGGTAAAGTTCGGAATCTGTCCAAGCATTTCAGGGAAGTTCCATAGTTTACAATCAATATACTTTCCTGATAAAATTTCTCTGGAACCTACATTTCAATATAAGTGGTCAAGACATTGCCACCAAGCTTTAAGGTTTCCATAATATGATGATTATATTGCTCTTTACTTTTATATTGTGTTATACTGACAAGAATCCTTGTATCTCAGGATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGT</genome_strand>
        <mrna_strand>GAAGACCATATCATATTAG.............................................................................................TGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG..................................................................................................................GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACAC-AGGGGGGGGGGGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAAACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAACTGCCATTGTAAAAAGGCTAAAAACATTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247803" ref_strand="+" ref_description="SGN-E247803 [cLEF-42-N4]">
      <seq>aagaccatatcatattagtgctctatatgttgtcgatgtgcttaaattccgggagactgctgctggagataatttacgagtgttttatgagacactgagcaaggatccaaacagtctttcaaatctggatcaggatctcccaaactatgctcagcatactgtacccatcttttcactcccacaagaatggctttggtgtgagtcatggtgtggtaatgcaacaaagcccaaggcaaaaacaatagacctctgcaataatcccatgacaaaagaacccaagcttcagggcgccaagaggattgtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacaccccttcttatcggatacattcactttgtggtgcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="83781" stop="81734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83481" g_stop="83464" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83370" g_stop="83256" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="133" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82552" g_stop="82400" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="286" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82285" g_stop="82034" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="538" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E247803" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83481" e_stop="83464"/>
          <exon e_start="83370" e_stop="83256"/>
          <exon e_start="82552" e_stop="82400"/>
          <exon e_start="82285" e_stop="82034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCATATCATATTAGGTATCCTTACCTCTTATATGTTGAATCACATATATAATAATTGTTAGTTATTTGAAAAGTGAACAAGCTTTCCATGGTGAATGCAATCTGCAGTGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAGGCAAGTGAATGCTTTCATGTGCAATCATCATATCATTCTACAACGCTGGCTCATCTTAAGTATTTCCTTTTTTGTGTTTTGACTTACTTGAAGCAAGAATGTGTTGGTTCTGAGGGTACACAATTTCTTTGCATTGTACTTGGTGCTTTCTGCTAGTGTACGTACTGGAAGTAGATTCTTCATTCTTTTATAATTTTATAATCGGCTATCTTTCCAGTTTGATTTCTTCATTTTAGATTAGAGAACTTCAGAAAATATAAAAAACTATTATTTATAAATGGAGATAGTTAAACATGATTATCCTGTCCTAGCGGAGGCCTGATATGCCTTCTTTATATTTGAATTTTTTCGTCCAGCAACTTAAAACTAGTAAGTCTTGCTGTTGCATAGTGATTACAGTGGTTATATTCAGTATGTATTAATTGGTAAATGGACGACAACCAAGTAGACCTGGCATAAGTTATGTCAATGACAACTTACACCATGCATATGTTATGGTAAAGTTCGGAATCTGTCCAAGCATTTCAGGGAAGTTCCATAGTTTACAATCAATATACTTTCCTGATAAAATTTCTCTGGAACCTACATTTCAATATAAGTGGTCAAGACATTGCCACCAAGCTTTAAGGTTTCCATAATATGATGATTATATTGCTCTTTACTTTTATATTGTGTTATACTGACAAGAATCCTTGTATCTCAGGATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTC</genome_strand>
        <mrna_strand>AAGACCATATCATATTAG.............................................................................................TGCTCTATATGTTGTCGATGTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG..................................................................................................................GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391814" ref_strand="+" ref_description="SGN-E391814 [TUS-24-J11]">
      <seq>gaagaccatatcatattagtgctctatatgttgtcgatctgcttaaattccgggagactgctgctggagataatttacgagtgttttatgagacactgagcaaggatccaaacagtctttcaaatctggatcaggatctcccaaactatgctcagcatactgtacccatcttttcactcccacaagaatggctttggtgtgagtcatggtgtggtaatgcaacaaagcccaaggcaaaaacaatagacctctgcaataatcccatgacaaaagaacccaagcttcagggcgccaagaggattgtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccatcagcgatactccattagaaagatgaggaatccaagtcagaactgtgaatttgatgctaggcaagtattcctggtgcttagacaccccttcttatcggatacattcactttgtggtgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="83782" stop="81735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83482" g_stop="83464" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83370" g_stop="83256" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="134" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82552" g_stop="82400" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="287" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82285" g_stop="82035" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="539" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E391814" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83482" e_stop="83464"/>
          <exon e_start="83370" e_stop="83256"/>
          <exon e_start="82552" e_stop="82400"/>
          <exon e_start="82285" e_stop="82035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACCATATCATATTAGGTATCCTTACCTCTTATATGTTGAATCACATATATAATAATTGTTAGTTATTTGAAAAGTGAACAAGCTTTCCATGGTGAATGCAATCTGCAGTGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAGGCAAGTGAATGCTTTCATGTGCAATCATCATATCATTCTACAACGCTGGCTCATCTTAAGTATTTCCTTTTTTGTGTTTTGACTTACTTGAAGCAAGAATGTGTTGGTTCTGAGGGTACACAATTTCTTTGCATTGTACTTGGTGCTTTCTGCTAGTGTACGTACTGGAAGTAGATTCTTCATTCTTTTATAATTTTATAATCGGCTATCTTTCCAGTTTGATTTCTTCATTTTAGATTAGAGAACTTCAGAAAATATAAAAAACTATTATTTATAAATGGAGATAGTTAAACATGATTATCCTGTCCTAGCGGAGGCCTGATATGCCTTCTTTATATTTGAATTTTTTCGTCCAGCAACTTAAAACTAGTAAGTCTTGCTGTTGCATAGTGATTACAGTGGTTATATTCAGTATGTATTAATTGGTAAATGGACGACAACCAAGTAGACCTGGCATAAGTTATGTCAATGACAACTTACACCATGCATATGTTATGGTAAAGTTCGGAATCTGTCCAAGCATTTCAGGGAAGTTCCATAGTTTACAATCAATATACTTTCCTGATAAAATTTCTCTGGAACCTACATTTCAATATAAGTGGTCAAGACATTGCCACCAAGCTTTAAGGTTTCCATAATATGATGATTATATTGCTCTTTACTTTTATATTGTGTTATACTGACAAGAATCCTTGTATCTCAGGATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAG-AAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCT</genome_strand>
        <mrna_strand>GAAGACCATATCATATTAG.............................................................................................TGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG..................................................................................................................GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728463" ref_strand="+" ref_description="SGN-E728463 [LA17DF05]">
      <seq>actatagaagaataagggaaaccagaacagttggaattctaatattcttaaatgggcttctggatttattggtggcagtgaccaatcaaagaagagtaaaaacactccagtggagcaggtaaccggtggtcgtcatgggaagacgattaacatattctctgttgcttctggactcttatatgaacgcttcctaaaaattatgatactaagtgttctaaagaatactcaacggccagtgaagttctggttcataataaactatttgtctcctcagttgaaggatgtaatccctcatatggctcgagaatatggttttgaatatgaactaattacctacaaatggcctacatggttgcacaaacaaaaggagaagcaaagaatcatttgggcatataaaattctatttcttgatgtcattttccccctggcactggagaaggttatcttcgtagacgcagaccaaattgtaagaactgacatgggagaactttatgacatggatttgaaaggacggccacttgcatacacacctttctgtgataacaacagggagatggatggctatcgtttttggaaacaaggcttctggaaagagcatttacgaggaagaccatatcatattagtgctctatatgttgtcgatctgcttaaattccgggagactgctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="85149" stop="83023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84982" g_stop="84967" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84847" g_stop="84752" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="112" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84751" i_stop="84648" i_length="104">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84647" g_stop="84583" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="177" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84582" i_stop="84240" i_length="343">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.577" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84239" g_stop="84137" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="280" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84136" i_stop="84039" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84038" g_stop="83880" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="439" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83879" i_stop="83747" i_length="133">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83746" g_stop="83606" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="580" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83605" i_stop="83508" i_length="98">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83507" g_stop="83464" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="624" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83370" g_stop="83323" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="672" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E728463" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84982" e_stop="84967"/>
          <exon e_start="84847" e_stop="84752"/>
          <exon e_start="84647" e_stop="84583"/>
          <exon e_start="84239" e_stop="84137"/>
          <exon e_start="84038" e_stop="83880"/>
          <exon e_start="83746" e_stop="83606"/>
          <exon e_start="83507" e_stop="83464"/>
          <exon e_start="83370" e_stop="83323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAGAAGAAAAAGGTGATGATTACCCTTTATTATTTTGTAAAGCATTTCCCTTTACAGAAAAGAAATTATTATGGGTCAGTAACTCTGAAATATTTACTAAGCTGTAGGAATACTAATTTTTTTGTTCACAGGGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTGGTAATTCCTCAAGTTCCACTCATCAAATATAGTAATCATACACATTAAGTTATCTAGAGAAAGTGTATGGTGATGGTTAAACGATTTTCTTTTCCTTGTCAAAGGAGCAGGTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTTGTGAGTTTCCTGATTTTATTCATCTTTTTCTTTTACCCTGCATTTTGATGCTCCTTAGGTGGTCTCTTCTAATGCTTTACTTTTTTCATTTCTAACAAGAAAAAGAACACAAGAAAGAAACAAAATCTTGTTGTCAATTTAGTTTATTCTTATATATTTTTCACTTCTACTGTTTTATGGCATACCTACTTTCGTGATAATTTATGGACAGTTGTATAGTTTTGGTTAGACTTATACTTTACTTATCTAAGAAGAAGTTTAGGTCAGACTTTAATTTGATCTTCCTAATCTTCTGCTTCTATTGTAGTTTCAACATCTAACAGCTTTAAGATGTACATTGCAGATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAGGTATGCTAACTTGCGTTCTTCACCTTAATTCTTTTTAGCAGCTTGTTTCAATCTATAAAGTTTACACGTTGAACTAATGAGATACTTTGTTCTTTTAGGATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAGGTATTCATCCCCCCCCCCCCCTCCCTTCCCCCCATTATTTTTTTGAATTCAATACATTATCTTTACTAGATCTTGTATTTTTTTGGTTGTGAGCTTATAGTTAATTGAACTTCTGTAATGTGTTAACCTGCAGGTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTGTGATAACAACAGGGAGATGGATGGCTATCGTTTTTGGAAACAAGTATCGGCATTTCTTTCTATTCACTTCTCTTTCTGCTCACTCATTGTCCTTTTAACTGACTAAGCTGATCACTAATGTTCTTTGTATTTATTGAATAGGGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAGGTATCCTTACCTCTTATATGTTGAATCACATATATAATAATTGTTAGTTATTTGAAAAGTGAACAAGCTTTCCATGGTGAATGCAATCTGCAGTGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGG</genome_strand>
        <mrna_strand>ACTATAGAAGAATAAG.......................................................................................................................GGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG........................................................................................................GAGCAGGTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACTCTT.......................................................................................................................................................................................................................................................................................................................................................ATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAATAAACTATTTGTCTCCTCAGTTGAAG..................................................................................................GATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAG.....................................................................................................................................GTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTGTGATAACAACAGGGAGATGGATGGCTATCGTTTTTGGAAACAA..................................................................................................GGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAG.............................................................................................TGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317862" ref_strand="+" ref_description="SGN-E317862 [cTOA-30-D10]">
      <seq>aagatagccattcacaagagaagaaaaagggaaaccagaacagttggaattctaatattcttaaatgggcttctggatttattggtggcagtgaccaatcaaagaagagtaaaaacactccagtggtaaccggtggtcgtcatgggaagacgattaacatattctctgttgcttctggacacttatatgaacgcttcctaaaaattatgatactaagtgttctaaagaatactcaacggccagtgaagttctggttcataaaaaactatttgtctcctcagttcaaggatgtaatccctcatatggctcgagaatatggttttgaatatgaactaattacctacaaatggcctacatggttgcacaaacaaaaggagaagcaaagaatcatttgggcatataaaattctatttcttgatgtcattttccccctggcactggagaaggttatcttcgtagacgcagaccaaattgtaagaactgacatgggagaactttatgacatggatttgaaaggacggccacttgcatacacacctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="85295" stop="83349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84995" g_stop="84967" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84847" g_stop="84752" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="125" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84751" i_stop="84642" i_length="110">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84641" g_stop="84583" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="184" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84582" i_stop="84240" i_length="343">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84239" g_stop="84137" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="287" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84136" i_stop="84039" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84038" g_stop="83880" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="446" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83879" i_stop="83747" i_length="133">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83746" g_stop="83649" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="544" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E317862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84995" e_stop="84967"/>
          <exon e_start="84847" e_stop="84752"/>
          <exon e_start="84641" e_stop="84583"/>
          <exon e_start="84239" e_stop="84137"/>
          <exon e_start="84038" e_stop="83880"/>
          <exon e_start="83746" e_stop="83649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGCCATTCACAAGAGAAGAAAAAGGTGATGATTACCCTTTATTATTTTGTAAAGCATTTCCCTTTACAGAAAAGAAATTATTATGGGTCAGTAACTCTGAAATATTTACTAAGCTGTAGGAATACTAATTTTTTTGTTCACAGGGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTGGTAATTCCTCAAGTTCCACTCATCAAATATAGTAATCATACACATTAAGTTATCTAGAGAAAGTGTATGGTGATGGTTAAACGATTTTCTTTTCCTTGTCAAAGGAGCAGGTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTTGTGAGTTTCCTGATTTTATTCATCTTTTTCTTTTACCCTGCATTTTGATGCTCCTTAGGTGGTCTCTTCTAATGCTTTACTTTTTTCATTTCTAACAAGAAAAAGAACACAAGAAAGAAACAAAATCTTGTTGTCAATTTAGTTTATTCTTATATATTTTTCACTTCTACTGTTTTATGGCATACCTACTTTCGTGATAATTTATGGACAGTTGTATAGTTTTGGTTAGACTTATACTTTACTTATCTAAGAAGAAGTTTAGGTCAGACTTTAATTTGATCTTCCTAATCTTCTGCTTCTATTGTAGTTTCAACATCTAACAGCTTTAAGATGTACATTGCAGATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAGGTATGCTAACTTGCGTTCTTCACCTTAATTCTTTTTAGCAGCTTGTTTCAATCTATAAAGTTTACACGTTGAACTAATGAGATACTTTGTTCTTTTAGGATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAGGTATTCATCCCCCCCCCCCCCTCCCTTCCCCCCATTATTTTTTTGAATTCAATACATTATCTTTACTAGATCTTGTATTTTTTTGGTTGTGAGCTTATAGTTAATTGAACTTCTGTAATGTGTTAACCTGCAGGTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTG</genome_strand>
        <mrna_strand>AAGATAGCCATTCACAAGAGAAGAAAAAG.......................................................................................................................GGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG..............................................................................................................GTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTT.......................................................................................................................................................................................................................................................................................................................................................ATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAG..................................................................................................GATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAG.....................................................................................................................................GTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262259" ref_strand="+" ref_description="SGN-E262259 [cLEG-56-G20]">
      <seq>tttttgctaatatgccaccttctaagacgctaactatgaatcttgatgttcctgagccatggctcgttgagcctgtagttgctgtccatgacctagataatatgttgcttgaaaacctgggagagactaggacactccaagcagtgtatgaacttgaagcactagtcctgacaggtcattgctctgagaaggatcaggagcctcctagaggacttcagctaatcctaggcactaaaagtacacctcacttggttgacacacttgtcatggccaatttgggttactggcaaatgaaagcgtttcctggagtttggtacctgcagcttgctcctggtcgaagctcagagctttatgctttgaaagatgatggtgatggtggtcaggagacaactttgtcaaaacggatcattatagatgatttgcgtggtaaacttgttcacatggaagtgattaagaaaaagggcaaggaacatgaaaaactgttggtttcagctgatgaagatagccattcacaagagaagaaaaagggaaaccagaacagttggaattctaatattcttaaatgggcttctggatttattggtggcagtgaccaatcaaagaagagtaaaacactccagtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="86057" stop="84451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85757" g_stop="85673" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85588" g_stop="85500" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85319" g_stop="84967" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="527" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84847" g_stop="84752" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="622" r_length="95" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E262259" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85757" e_stop="85673"/>
          <exon e_start="85588" e_stop="85500"/>
          <exon e_start="85319" e_stop="84967"/>
          <exon e_start="84847" e_stop="84752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGTGTAAGTATTTCAAAAGATTATGGAACTTATGCTAATGGCATATATGCCAGGCTACTTAGTGATGATATCTGCCTAAACTTGCAGCCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAGGTACTTCATTCTCCTCTAGTTGATGTAGTAGGTTACAATATTGGTAAAAGAAGAATAATGGGATGGACTGCAGATGAGCTAATTCCTTAATTGTAACCCTAGATATTGGCTAAAGAAGAACAATGCCATAGTTCCACTGCAAATGATTTAATCGTTGTAGTTTCTAAACTGTTTGATCAGGTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATGAAGATAGCCATTCACAAGAGAAGAAAAAGGTGATGATTACCCTTTATTATTTTGTAAAGCATTTCCCTTTACAGAAAAGAAATTATTATGGGTCAGTAACTCTGAAATATTTACTAAGCTGTAGGAATACTAATTTTTTTGTTCACAGGGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG</genome_strand>
        <mrna_strand>TTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGT....................................................................................CCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAG....................................................................................................................................................................................GTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATGAAGATAGCCATTCACAAGAGAAGAAAAAG.......................................................................................................................GGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGT-AAAACACTCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284199" ref_strand="+" ref_description="SGN-E284199 [cLER-16-O15]">
      <seq>ttttgctaatatgccaccttctaagacgctaactatgaatcttgatgttcctgagccatggctcgttgagcctgtagttgctgtccatgacctagataatatgttgcttgaaaacctgggagagactaggacactccaagcagtgtatgaacttgaagcactagtcctgacaggtcattgctctgagaaggatcaggagcctcctagaggacttcagctaatcctaggcactaaaagtacacctcacttggttgacacacttgtcatggccaatttgggttactggcaaatgaaagcgtttcctggagtttggtacctgcagcttgctcctggtcgaagctcagagctttatgctttgaaagatgatggtgatggtggtcaggagacaactttgtcaaaacggatcattatagatgatttgcgtggtaaacttgttcacatggaagtgattaagaaaaagggcaaggaacatgaaaaactgttggtttcagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="86056" stop="84696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85756" g_stop="85673" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85588" g_stop="85500" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="173" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85319" g_stop="84996" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="497" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E284199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85756" e_stop="85673"/>
          <exon e_start="85588" e_stop="85500"/>
          <exon e_start="85319" e_stop="84996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGTGTAAGTATTTCAAAAGATTATGGAACTTATGCTAATGGCATATATGCCAGGCTACTTAGTGATGATATCTGCCTAAACTTGCAGCCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAGGTACTTCATTCTCCTCTAGTTGATGTAGTAGGTTACAATATTGGTAAAAGAAGAATAATGGGATGGACTGCAGATGAGCTAATTCCTTAATTGTAACCCTAGATATTGGCTAAAGAAGAACAATGCCATAGTTCCACTGCAAATGATTTAATCGTTGTAGTTTCTAAACTGTTTGATCAGGTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATG</genome_strand>
        <mrna_strand>TTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGT....................................................................................CCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAG....................................................................................................................................................................................GTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205258" ref_strand="+" ref_description="SGN-E205258 [cLEC-25-H7]">
      <seq>atattgatgctgtcattgaccccttgagctcatctggtcaaaagttgtcttctcttcttcggcttgtgtcaaagtccgttcggccaagcatgaggcttgtactcaaccccatgagttcactggttgatcttccattgaagaactactacagatatgttataccaacactggatgactttagtagtacagattacaccatttatggtcccaaagcgttttttgctaatatgccaccttctaagacgctaactatgaatcttgatgttcctgagccatggctcgttgagcctgtagttgctgtccatgacctagataatatgttgcttgaaaacctgggagagactaggacactccaagcagtgtatgaacttgaagcactagtcctgacaggtcattgctctgagaaggatcaggagcctcctagaggacttcagctaatcctaggcactaaaagtacacctcacttggttgacacacttgtcatggccaatttgggttactggcaaatgaaagcgtttcctggagtttggtacctgcagcttgctcctggtcgaagctcagagctttatgctttgaaagatgatggtgatggtggtcaggagacaactttgtcaaaacggatcattatagatgatttgcgtggtaaacttgttcacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="87546" stop="84750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87246" g_stop="87134" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87133" i_stop="85968" i_length="1166">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85967" g_stop="85911" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="170" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85910" i_stop="85804" i_length="107">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85803" g_stop="85673" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="301" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85588" g_stop="85500" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="390" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85319" g_stop="85050" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="660" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E205258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87246" e_stop="87134"/>
          <exon e_start="85967" e_stop="85911"/>
          <exon e_start="85803" e_stop="85673"/>
          <exon e_start="85588" e_stop="85500"/>
          <exon e_start="85319" e_stop="85050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGATGCTGTCATTGACCCCTTGAGCTCATCTGGTCAAAAGTTGTCTTCTCTTCTTCGGCTTGTGTCAAAGTCCGTTCGGCCAAGCATGAGGCTTGTACTCAACCCCATGGTGAGTTGATTTCCTTGAGTAATATATGACAACCATTGGAAATGGTCACTACTTCATTTAGAACTCTGCACTTTCCCATGATTTGTACTGGCAGTGGAACTGCCTCTGTAATGTGCTCTACAGTTTATAACTTAGGGGGAGTCCTGGGCTAGGAGCTGGTTTGGGAAATCACCGGAGCTTACTTATTCAGAGGGACTTGATTTTGAAACGGAATGATTGATATAATCGATATTTCATAGTAGGACTAATGTGATTTTAGGGTCTGAAGACAGGTTCGTCCTAGGGCTTGGTCAATTGAAAGATGCATGGCATCAGAGAAGAAGGAAAATTAGCCAACATCAGTGCAATGTTTTATAATTACATCTAGGGCGCTAGGTTAGAACAAATGATACGCTTTAAGCTCGACAACATAATGATGGTTGAAGGGAACATTTCAGCAAGAATTTACTTTTCATTATTAGTTGAGGTGCGTGCTAGCTGATGTAGATCTGTCATTTATTCATCAATGAAGGGAGCGAAAGACAGAGAGTCTAAACTGTTCCATATATCATCCACGTATTTGGTGAATGTCCATGCAGAGGTTAGAAAGGGAAGGAAGTTGGATAGTTGCTCCTTGCTAGTGTTTGAGAAGAAGAAACTCAGTTTTGAAGCTACTGAAACTCATAAGCAGTTAAAGTTCGAATTGTGAGAGATGGCTGAATTGAAAGTTCAGGGCAAAGTCTATTTACGTCCTACCCTCCCCTGACCTCACTTGTGGAATTGCAGTGGGTATGTTGTTGTCGTTGTTGGCTAAATTATAAGATGGTCTTTCAAAAAAATATATGTTCCTTTTTGTAACTAGGGTGCTCCAAATATGAAATGTTAGTACTTTGGCTATCTTGCTCTTGACAGTCAGACATGCATGCTGAGGCCGGCTAAATGAGCAATCAAAAGTTTGTCCTTACAATCACTACTTAGTTTTGGTTTTAACTTCAATAATTTGCAATTTGTCTCCAAAATACTTCCATGTCCTAAGGTATGTTGCCTCTATATTAATAAAATGAAACATCTACGATGTTTGTATGTCTTGAGATATGTTTCCTCCTTTGTATCATAAAGATCTCGACGTAATGGCTTTGTCGATAAACCTTAGGTTTAGGAAGTTTTCATTATCTTTTTTCTTGCAGAGTTCACTGGTTGATCTTCCATTGAAGAACTACTACAGATATGTTATACCAACACTGGTATGTCAGAACAACTTGTCTTTGCAAGTCCTTCAGTCATAATTTTTTTGATGAATTAGTCCTTCATGCATATTATTCTCCCTGTCTCATTTATGCTAATTTTACAGGATGACTTTAGTAGTACAGATTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGTGTAAGTATTTCAAAAGATTATGGAACTTATGCTAATGGCATATATGCCAGGCTACTTAGTGATGATATCTGCCTAAACTTGCAGCCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAGGTACTTCATTCTCCTCTAGTTGATGTAGTAGGTTACAATATTGGTAAAAGAAGAATAATGGGATGGACTGCAGATGAGCTAATTCCTTAATTGTAACCCTAGATATTGGCTAAAGAAGAACAATGCCATAGTTCCACTGCAAATGATTTAATCGTTGTAGTTTCTAAACTGTTTGATCAGGTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGG</genome_strand>
        <mrna_strand>ATATTGATGCTGTCATTGACCCCTTGAGCTCATCTGGTCAAAAGTTGTCTTCTCTTCTTCGGCTTGTGTCAAAGTCCGTTCGGCCAAGCATGAGGCTTGTACTCAACCCCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCACTGGTTGATCTTCCATTGAAGAACTACTACAGATATGTTATACCAACACTG...........................................................................................................GATGACTTTAGTAGTACAGATTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGT....................................................................................CCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAG....................................................................................................................................................................................GTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211170" ref_strand="+" ref_description="SGN-E211170 [cLEC-70-K2]">
      <seq>acagtctcatcttaccaccagagtggcaggaacacatggctacttagctcctgaatatgctctctatgggcaattgactgagaagagcgatgtttatagttttggggttgttgttttggaaataatgtgtggaaggaaggtccttgatttctcttctggatcgcctcgttcttttctgatcacggattgggcttggtcgaaggtaaaagctggaaagatgaatgaagttttggatgccatcctagtaaagactgaggattccgtaagtgcaaatccaagggctataatggtgagatttctccttgttggaatattatgtgctcacgtgatggtggccttaaggccaactatattggatgcactaaaaatgttagaaggagatattgaggttcctgaaattccagacagaccagcacctcttggacacccttcattttataatgctagtggtaacacattcagcatatcaccagccttgagttgcttgcaaatgcctgctggagacatgctcangtgacaatatgaagtattctcatatgacatacttttcttgcttattgagattanngagaagctaatgaaatttctgctagagttgaacctgggaaccgagtgcctagagatttttttgatcaataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="109247" stop="108004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108947" g_stop="108304" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E211170" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108947" e_stop="108304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTATGGGCAATTGACTGAGAAGAGCGATGTTTATAGTTTTGGGGTTGTTGTTTTGGAAATAATGTGTGGAAGGAAGGTCCTTGATTTCTCTTCTGGATCGCCTCGTTCTTTTCTGATCACGGATTGGGCTTGGTCGAAGGTAAAAGCTGGAAAGATGAATGAAGTTTTGGATGCCATCCTAGTAAAGACTGAGGATTCCGTAAGTGCAAATCCAAGGGCTATAATGGTGAGATTTCTCCTTGTTGGAATATTATGTGCTCACGTGATGGTGGCCTTAAGGCCAACTATATTGGATGCACTAAAAATGTTAGAAGGAGATATTGAGGTTCCTGAAATTCCAGACAGACCAGCACCTCTTGGACACCCTTCATTTTATAATGCTAGTGGTAACACATTCAGCATATCACCAGCCTTGAGTTGCTTGCAAATGCCTGCTGGAGACATGCTCAGGTGACAATATGAAGTATTCTCATATGACATACTTTTCTTGCTTATTGAGATTAGGAGAAAGCTAATGAAATTTCTGCTAGAGTTGAACCTGGGAACCGAGTGCCTAGAGATTTTTTTGATCAAATAATATT</genome_strand>
        <mrna_strand>ACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTATGGGCAATTGACTGAGAAGAGCGATGTTTATAGTTTTGGGGTTGTTGTTTTGGAAATAATGTGTGGAAGGAAGGTCCTTGATTTCTCTTCTGGATCGCCTCGTTCTTTTCTGATCACGGATTGGGCTTGGTCGAAGGTAAAAGCTGGAAAGATGAATGAAGTTTTGGATGCCATCCTAGTAAAGACTGAGGATTCCGTAAGTGCAAATCCAAGGGCTATAATGGTGAGATTTCTCCTTGTTGGAATATTATGTGCTCACGTGATGGTGGCCTTAAGGCCAACTATATTGGATGCACTAAAAATGTTAGAAGGAGATATTGAGGTTCCTGAAATTCCAGACAGACCAGCACCTCTTGGACACCCTTCATTTTATAATGCTAGTGGTAACACATTCAGCATATCACCAGCCTTGAGTTGCTTGCAAATGCCTGCTGGAGACATGCTCANGTGACAATATGAAGTATTCTCATATGACATACTTTTCTTGCTTATTGAGATTANNGAGAAGCTAATGAAATTTCTGCTAGAGTTGAACCTGGGAACCGAGTGCCTAGAGATTTTTTTGATC-AATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395548" ref_strand="+" ref_description="SGN-E395548 [TUS-43-G6]">
      <seq>tagtttataaaggaactttagcagatgggactaatgttgctgtcaaaaagattatagaatctgattttcaaggaaatgatgagttttgcaatgaggttgagattattagtaacttgaagcatcgtaatcttgtatcacttaggggttgttgcgtgacagataaaaatcggattgaaaatggggagagtgaaagattcctcgtgtatgattacatgcccaatgggaatcttgaggatcatttatttgctgtaaatcaaggtggaatactgaagcagccgttgacttggcctcagagaaaaaacataattttggatgtggcaaaaggactagcttatctgcattatggggtaaagccagcaatttatcacagggacattaaagctactaatatcctattagatgaagatatgagagcaagagttgctgactttgggttggtaaagcaaagtagagaaggacagtctcatcttaccaccagagtggcaggaacacatggctacttagctcctgaatatgctctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="109704" stop="108580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109404" g_stop="108880" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E395548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109404" e_stop="108880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTATAAAGGAACTTTAGCAGATGGGACTAATGTTGCTGTCAAAAAGATTATAGAATCTGATTTTCAAGGAAATGATGAGTTTTGCAATGAGGTTGAGATTATTAGTAACTTGAAGCATCGTAATCTTGTATCACTTAGGGGTTGTTGCGTGACAGATAAAAATCGGATTGAAAATGGGGAGAGTGAAAGATTCCTCGTGTATGATTACATGCCCAATGGGAATCTTGAGGATCATTTATTTGCTGTAAATCAAGGTGGAATACTGAAGCAGCCGTTGACTTGGCCTCAGAGAAAAAACATAATTTTGGATGTGGCAAAAGGACTAGCTTATCTGCATTATGGGGTAAAGCCAGCAATTTATCACAGGGACATTAAAGCTACTAATATCCTATTAGATGAAGATATGAGAGCAAGAGTTGCTGACTTTGGGTTGGTAAAGCAAAGTAGAGAAGGACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTATG</genome_strand>
        <mrna_strand>TAGTTTATAAAGGAACTTTAGCAGATGGGACTAATGTTGCTGTCAAAAAGATTATAGAATCTGATTTTCAAGGAAATGATGAGTTTTGCAATGAGGTTGAGATTATTAGTAACTTGAAGCATCGTAATCTTGTATCACTTAGGGGTTGTTGCGTGACAGATAAAAATCGGATTGAAAATGGGGAGAGTGAAAGATTCCTCGTGTATGATTACATGCCCAATGGGAATCTTGAGGATCATTTATTTGCTGTAAATCAAGGTGGAATACTGAAGCAGCCGTTGACTTGGCCTCAGAGAAAAAACATAATTTTGGATGTGGCAAAAGGACTAGCTTATCTGCATTATGGGGTAAAGCCAGCAATTTATCACAGGGACATTAAAGCTACTAATATCCTATTAGATGAAGATATGAGAGCAAGAGTTGCTGACTTTGGGTTGGTAAAGCAAAGTAGAGAAGGACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203516" ref_strand="+" ref_description="SGN-E203516 [cLEC-15-G17]">
      <seq>agtttataaaggaactttagcagatgggactaatgttgctgtcaaaaagattatagaatctgattttcaaggaaatgatgagttttgcaatgaggttgagattattagtaacttgaagcatcgtaatcttgtatcacttaggggttgttgcgtgacagataaaaatcggattgaaaatggggagagtgaaagattcctcgtgtatgattacatgcccaatgggaatcttgaggatcatttatttgctgtaaatcaaggtggaatactgaagcagccgttgacttggcctcagagaaaaaacataattttggatgtggcaaaaggactagcttatctgcattatggggtaaagccagcaatttatcacagggacattaaagctactaatatcctattagatgaagatatgagagcaagagttgctgactttgggttggtaaagcaaagtagagaaggacagtctcatcttaccaccagagtggcaggaacacatggctacttagctcctgaatatgctctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="109703" stop="108581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109403" g_stop="108881" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E203516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109403" e_stop="108881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATAAAGGAACTTTAGCAGATGGGACTAATGTTGCTGTCAAAAAGATTATAGAATCTGATTTTCAAGGAAATGATGAGTTTTGCAATGAGGTTGAGATTATTAGTAACTTGAAGCATCGTAATCTTGTATCACTTAGGGGTTGTTGCGTGACAGATAAAAATCGGATTGAAAATGGGGAGAGTGAAAGATTCCTCGTGTATGATTACATGCCCAATGGGAATCTTGAGGATCATTTATTTGCTGTAAATCAAGGTGGAATACTGAAGCAGCCGTTGACTTGGCCTCAGAGAAAAAACATAATTTTGGATGTGGCAAAAGGACTAGCTTATCTGCATTATGGGGTAAAGCCAGCAATTTATCACAGGGACATTAAAGCTACTAATATCCTATTAGATGAAGATATGAGAGCAAGAGTTGCTGACTTTGGGTTGGTAAAGCAAAGTAGAGAAGGACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTAT</genome_strand>
        <mrna_strand>AGTTTATAAAGGAACTTTAGCAGATGGGACTAATGTTGCTGTCAAAAAGATTATAGAATCTGATTTTCAAGGAAATGATGAGTTTTGCAATGAGGTTGAGATTATTAGTAACTTGAAGCATCGTAATCTTGTATCACTTAGGGGTTGTTGCGTGACAGATAAAAATCGGATTGAAAATGGGGAGAGTGAAAGATTCCTCGTGTATGATTACATGCCCAATGGGAATCTTGAGGATCATTTATTTGCTGTAAATCAAGGTGGAATACTGAAGCAGCCGTTGACTTGGCCTCAGAGAAAAAACATAATTTTGGATGTGGCAAAAGGACTAGCTTATCTGCATTATGGGGTAAAGCCAGCAATTTATCACAGGGACATTAAAGCTACTAATATCCTATTAGATGAAGATATGAGAGCAAGAGTTGCTGACTTTGGGTTGGTAAAGCAAAGTAGAGAAGGACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379195" ref_strand="+" ref_description="SGN-E379195 [TUS-1-I3](-)">
      <seq>aggaagaccagctcctggtaaagagctcacagacgagtttaatgttctggaggctaatctgtggaatgctgtttctctgaataaagggtgctataagggccaagaaaccattgctagacttgtaacttacgatggcatcaagcagagactatggggaatacgtgtctcatcgcctgtggaacctggtagcactatctcagttaatgggaaaaaggttggcaaggtgacgagtttcacaactggtaaacgagcatctcagcccctcggtcttggctatattaagaggaaagctgcttctgagggagacagtgtaattattggtgatgatgttgagggtacagtggtggaagtgccttttctcgctcgtcaaatccctccatcctagagctgaatatagacaacattatctctcctctctgctactctgtatcaacaaatgtagcatatgtgatgtcataatttacctttggtgtaacatctgctctctggttcgtgtgttttgtctcgttaatggctctaccagaagctagacgatagcatccttgaagaccccttaaagttgcttacccaatcgtttgagccattaacatttttgcttcattatagccacctgttggcctcccgcagaaaaggaaatgaggaagctaagtgatagaaatcaggtgagtggaaaaaatcttctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="113621" stop="111743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113321" g_stop="113236" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112920" g_stop="112793" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="214" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112515" g_stop="112043" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="687" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E379195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113321" e_stop="113236"/>
          <exon e_start="112920" e_stop="112793"/>
          <exon e_start="112515" e_stop="112043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAGGTTCAGGAGCTCCTATTTCTATTACTCCCTCCGTTTCAAAAAGATTGGCCTAGTTTGACTTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAATTTAAAGCTATGTCAAATGTATCAAAATACCTTTTAATCTTGTGGTCTTATACATGTCATGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGAAAATGGGTCATTCTTTTTGAAACAAACTAAAAAGGAAATAAGGTCATTCTTTTTTAAATGGAGGGAGTATTATTTTTCCTTCTGTTTATGGATTATCAAATATGATAAATAAATTTCAGGGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAGGTTTGAGATTTTCTGATTTTTCAATTGATTGCTTCAGTCCCTATTGTGATAGTTATGGTGTAACAAATTGTACCTTGGCACGTTAACCCTTTGCATTGTTCTGCCTTGTAAATGAAATGCATCAAACAAAATTAATGCCTTGTGAAGAATCGTCTAAGACAACTGAAAACAGTCAAGTGTATTACTGAAATCAGATCACCATTATTTTTTCTTTATTGTTTCTAGTATGACCATTTGGAAAGAATTGCCAGAATGATGGTGCTATGAACTTCGGCAGGTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATAATTTACCTTTGGTGTAACATCTGCTCTCTGGTTCGTGTGTTTTGTCTCGTTAATGGCTCTACCAGAAGCTAGACGATAGCATCCTTGAAGACCCCTTAAAGTTGCTTACCCAATCGTTTGAGCCATTAACATTTTTGCTTCATTATAGCCACCTGTTGGCCTCCCGCAGAAAAGGAAATGAGGAAGCTAAGTGATAGAAATCAGGTGAGTGGAAAAAATCTTCTGATGT</genome_strand>
        <mrna_strand>AGGAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG...........................................................................................................................................................................................................................................................................................................................GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG.....................................................................................................................................................................................................................................................................................GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATAATTTACCTTTGGTGTAACATCTGCTCTCTGGTTCGTGTGTTTTGTCTCGTTAATGGCTCTACCAGAAGCTAGACGATAGCATCCTTGAAGACCCCTTAAAGTTGCTTACCCAATCGTTTGAGCCATTAACATTTTTGCTTCATTATAGCCACCTGTTGGCCTCCCGCAGAAAAGGAAATGAGGAAGCTAAGTGATAGAAATCAGGTGAGTGGAAAAAATCTTCTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745575" ref_strand="+" ref_description="SGN-E745575 [GI|47105879]">
      <seq>tggtgtgaaattgcaagagagatggcgtctctctactctgcaaatttgttatttccctctcttcctttttcttcttcatcatccctacttatgccactaccttaccggccatacgatgtgtcgccggcgaagattaatcgacgcctttcttcttctttttcttctgctgcgctgccattcgatctttctcctcctcccatcgaccacgacctcctcgatactatgacaattgctggggcaaaggtatcagaagatggggtaatagggacattcgataatgacgaggaggcattagatgctgttgagaatggtgttgcggttgtggatctttcacactatggcaggataagagttagtggagaagacagggttcagtttcttcacaaccaaagtactgctaactttgaaattcttcatgaggggcaggtaggatgtgacactgtttttgtgacaccaactgctagaaccatcgatattgcccatgcctgggttatgaaaacggcaatcacattagtggtctctccagtgaccagggaaagaataactcatatgcttgagaagtacatattctttgcagacaaagttgaaattcaagatattaccgagaaaacgtccttgttcttactagtagggcctacaagtaacaaaataatggaggctctgagtcttgctgacatagttggacaaccatatggatcgcataagcattacaatgtaaatggaatgccaataactgtgggagtgggaaatatcatctctgaagaaggttatttactactgatgtctccagctgctgctgaatcggtctggagagctattctaggtcatggtgctgtcccaatgggttctaatgcatgggaaactttaaggattcttcaaggaagaccagctcctggtaaagagctcacagacgagtttaatgttctggaggctaatctgtggaatgctgtttctctgaataaagggtgctataagggccaagaaaccattgctagacttgtaacttacgatggcatcaagcagagactatggggaatacgtgtctcatcgcctgtggaacctggtagcactatctcagttaatgggaaaaaggttggcaaggtgacgagtttcacaactggtaaacgagcatctcagcccctcggtcttggctatattaagaggaaagctgcttctgagggagacagtgtaattattggtgatgatgttgagggtacagtggtggaagtgccttttctcgctcgtcaaatccctccatcctagagctgaatatagacaacattatctctcctctctgctactctgtatcaacaaatgtagcatatgtgatgtcataatttacctttggtgtaacatctgctctctggttcgtgtgttttgtctcgttaatggctctaccagaagctagacgatagcatccttgaagaccccttaaagttgcttaccctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="117525" stop="111859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117225" g_stop="117010" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116332" g_stop="116231" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="318" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115988" g_stop="115955" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="352" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115553" g_stop="115477" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="429" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115476" i_stop="115393" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115392" g_stop="115327" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="495" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115217" g_stop="115153" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="560" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115152" i_stop="115012" i_length="141">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115011" g_stop="114924" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="648" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="114816" g_stop="114751" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="714" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="113681" g_stop="113516" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="880" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="113515" i_stop="113320" i_length="196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="113319" g_stop="113236" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="964" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="112920" g_stop="112793" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1092" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="112515" g_stop="112160" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1093" r_stop="1448" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1449" polyA_stop="1462"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E745575" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1448</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117225" e_stop="117010"/>
          <exon e_start="116332" e_stop="116231"/>
          <exon e_start="115988" e_stop="115955"/>
          <exon e_start="115553" e_stop="115477"/>
          <exon e_start="115392" e_stop="115327"/>
          <exon e_start="115217" e_stop="115153"/>
          <exon e_start="115011" e_stop="114924"/>
          <exon e_start="114816" e_stop="114751"/>
          <exon e_start="113681" e_stop="113516"/>
          <exon e_start="113319" e_stop="113236"/>
          <exon e_start="112920" e_stop="112793"/>
          <exon e_start="112515" e_stop="112160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTGAAATTGCAAGAGAGATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTCGTTAGTACCAAATTCTTAAACTTGTTTCTTAGTATTCTGAGTTGTTAATTCTTGATTTTTTGGAAGTTAACGTGATTCTGGGCTTTCACAAGTACCAAATTAAATAGACACAACCTGCTTTTTATTGTTTCTGAGTTGGTAATTCTTGATTCTTAGAGTGTGGGTTTTGATAAATTCCAAATTCTTATATTTTCTTAATCTTGAAAGTCAGTTGGCTGTAGCATGTGTGAAGAAGGAAGACTGATTGTGGACTTTTGTGAGACGTAATCATTTCTTTCCTAATCTTTTTGATGTAGAATTGTCCTGTTCAATGTACTATCTTGCTGGGTAAAAATAATTGAACTATTTGGATTATCAATCCTAAAGCTTTGAAAATAAATTTTCCTTTCTGAAGGAAAAATCAAAACAAATACTTAATGTAATGGGGGTGGGGTAGACAAGTCTTATTGGCTATGGGTGCCCTCCATCCACCCCTGCTTGGAATGTCTCACTTCAGTAGGCAGTTAAGACTTAAAAAATCTTTTTTCTGTACGATGAGTGTACACGAAGGACATGTTACCTCTGCTAAATGTTTCCTGATGATCAAGGGAAGGATGAGAGTCACTGACCTGATGTTTCTACATGCTTTCATTGTTGGTCTCCTTAGATTTGGCTTGTTTAACTTTTTCTTCCTGCAGGATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCGGTGTGTATCTAGCTTGATTCAGGTTTTCTTGGTAATTTTAGTTATTTTTTCCTATTAAAAATCTGCATGTCATATAAATTTCATCTGTTGATTAAAAGACGTGTAATGGTCCAACTTTCCTATCACATGTTGTATATTTTACTGCCATATCTGGAATGAGCCTGGCCTTTTAAGGGAACTTGTATACTGCTCATCTTAGTCTTTCAAAGTGTGATCTGATGGCATCATTCAATTTGTTCTAGGTTGTGGATCTTTCACACTATGGCAGGATAAGAGGTAAATCCATCCACACATTTTCATTGTGAAAATGATTCTGTTTTATTTTATAAGACAACTCCAAGTTTAATCTGTGAATAATCTATTGACGTGGAGGAATAGAGGTTAGGTTAGTTTTTAATGTATCTTAAAGTAAGTCCATTATCCATACTATTCTTCTAATAAAATAGTAAATTCTTCCTACTTAAACAATTCTGTGGAATGTGGTTGTTTGCTTATTTCCTAGTGCGAGTCATGTGGATAATGGATGTGAAAATTACTTTTTACGACTTGTTCTTGTGCTAGTGATGTATTGTGGACTAACTGGATATAAGTTTTTCTACTTCTTTGAATTGTTTTGGAGGTTACTTATTCATAGTTGTTATTTCAGCTATCTATGTCTGTCTTTTTATTTCACACAGTTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTATTGATTCGGTTTCCACAACTCTAGGTTGATGAAAATAGCAAACTCCACTAATGTGCTTTTATATTTCATGCCTGGGAATTGTAGGGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATGGTAATCCTTCACAGCTCCCTTGCTGAGAATTGGTTTCTTGTGCCTAAGCTTTCATATGTTAAGACTATTATTTAAGTACTATTATTGAAGTGGACATTATATTTCACAGAAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAAGTATGTATGGAACTGCCATGGTTTTGCTCTGAATTGCTGTCACTCTTGCTTACCTATGCTTCAATAGTTTTTTGGGGCCTAACCAGTTATTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAAGTAAGAACTGTGTCTAGTTAATCATCAAACAAGGTGATAATATTTGTTATCTTCTTACTTCACTTAAAAGGTACAACTAACTTTTGTATGTAATGGCTTACAAACAGATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAATGTAATTGGATTCTTACCTCTCTGATTCATCTTCTGGACAATGTTAACTTCCCTCTTTACTTGGGTGTCAGTTTTCACCAAACTTGATGTCTTACTGAATCACCCAATTTAAAGTTATACTTACATACTTGTTTGGTTTAGATTATTTGGTACTCCTTCTAACCCATATTGTTTGATCTACTTATCTTAGTCTGTGCAAGATATAACTTCTTTCCTCAAATTGCAAAGGCCAACGATTATAAAATATTGGATTAACATATCATGATATTACTTCCTATTGTTTTGTATTTAATGCGACTTATCTTCCCGCCAGTACACCAACTTATATGACTAACTTATGGGTATAATAAATCATTCAAAAGTATAATATGTCATTCAAGCATTGTCCTCCTAAATTCCATTTAAATATAAGTCACCAAAAAAGGGATTGAAGTGAGCATTCAACTAAAAGATTTCTTAAGATTGGTAATAGCTCTGACTATTGATTCTTTTGTAACGTAACCAAACAAGTTGATAATAAAAAAATTTAATATAAAATGGTGATTAGATTGTGTCAAATGATCCAAACTTGAACAATGATTTCCAATTTTCTTTTCTCTTTTTTAAAGGAGACATGATGGCTTTGAACACATTGAAGTGTTCTTCAGATTGCGTTGGGCCCTCTGTCATTTTTAGTTCATGTATCAATTCACCAATTTTCATTTGCATTATTTAAAAACATTAATATCTATCCATTTATAATTAGTTGTTATTTCCAATTGCATCCTCTTTAGTCAACCTTGTGATGCATTCATGATTGTTCTTGTATTGTCAAATTCAACTTCTCAATAAAAATATTTTACAGTTTCTCTGCCATTTGTCTGCAATATCCGCAGTTAATGTCCTTTCTTACCACTTAAATACTTGCTTGTTAACTTTTCTACTGTTTAGCTTCTGCTGGTGTAGTTGCTCTCATGTCCTATATGTTAGATTAATTTCAGTATCTTGAGCATATCGTCGTGCCCGAGTTTCCCAAGAAATAGGAGGCTTAACATTTTACTTTTTCTTATGAAATTAATTAATATGAGAAGGTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAGGTAATTAAAGACAATTTGGTTCTCTCTTTTTATTTTTAATATTCCAGGTAATATCTTCTGTTGAGATCATGATTCCAGTGTGTTCTGACCACCTATTATGCTTTAGGTTTGTGTCCTCAAGTTTCGAGCAATCATCATCCTGTGTGATTTGATTTCCAATATTGATGCAGAAAGATTTGTGTCTTAATTCATGCAGGAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAGGTTCAGGAGCTCCTATTTCTATTACTCCCTCCGTTTCAAAAAGATTGGCCTAGTTTGACTTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAATTTAAAGCTATGTCAAATGTATCAAAATACCTTTTAATCTTGTGGTCTTATACATGTCATGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGAAAATGGGTCATTCTTTTTGAAACAAACTAAAAAGGAAATAAGGTCATTCTTTTTTAAATGGAGGGAGTATTATTTTTCCTTCTGTTTATGGATTATCAAATATGATAAATAAATTTCAGGGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAGGTTTGAGATTTTCTGATTTTTCAATTGATTGCTTCAGTCCCTATTGTGATAGTTATGGTGTAACAAATTGTACCTTGGCACGTTAACCCTTTGCATTGTTCTGCCTTGTAAATGAAATGCATCAAACAAAATTAATGCCTTGTGAAGAATCGTCTAAGACAACTGAAAACAGTCAAGTGTATTACTGAAATCAGATCACCATTATTTTTTCTTTATTGTTTCTAGTATGACCATTTGGAAAGAATTGCCAGAATGATGGTGCTATGAACTTCGGCAGGTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATAATTTACCTTTGGTGTAACATCTGCTCTCTGGTTCGTGTGTTTTGTCTCGTTAATGGCTCTACCAGAAGCTAGACGATAGCATCCTTGAAGACCCCTTAAAGTTGCTTACCCA</genome_strand>
        <mrna_strand>TGGTGTGAAATTGCAAGAGAGATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG..................................................................................................................................................................................................................................................GTTGTGGATCTTTCACACTATGGCAGGATAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTA....................................................................................GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG.............................................................................................................AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAA.............................................................................................................................................GTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAA...........................................................................................................ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAGAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAG....................................................................................................................................................................................................GAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG...........................................................................................................................................................................................................................................................................................................................GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG.....................................................................................................................................................................................................................................................................................GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATAATTTACCTTTGGTGTAACATCTGCTCTCTGGTTCGTGTGTTTTGTCTCGTTAATGGCTCTACCAGAAGCTAGACGATAGCATCCTTGAAGACCCCTTAAAGTTGCTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379170" ref_strand="+" ref_description="SGN-E379170 [TUS-1-I3]">
      <seq>atagttggacaaccatatggatcgcataagcattacaatgtaaatggaatgccaataactgtgggagtgggaaatatcatctctgaagaaggttatttactactgatgtctccagctgctgctgaatcggtctggaaagctattctaggtcatggtgctgtcccaatgggttctaatgcatgggaaactttaaggattcttcaaggaagaccagctcctggtaaagagctcacagacgagtttaatgttctggaggctaatctgtggaatgctgtttctctgaataaagggtgctataagggccaagaaaccattgctagacttgtaacttacgatggcatcaagcagagactatggggaatacgtgtctcatcgcctgtggaacctggtagcactatctcagttaatgggaaaaaggttggcaaggtgacgagtttcacaactggtaaacgagcatctcagcccctcggtcttggctatattaagaggaaagctgcttctgagggagacagtgtaattattggtgatgatgttgagggtacagtggtggaagtgccttttctcgctcgtcaaatccctccatcctagagctgaatatagacaacattatctctcctctctgctactctgtatcaacaaatgtagcatatgtgatgtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="115089" stop="111972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114789" g_stop="114751" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113681" g_stop="113516" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="205" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113515" i_stop="113320" i_length="196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113319" g_stop="113236" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="289" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112920" g_stop="112793" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="417" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112515" g_stop="112272" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="661" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E379170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114789" e_stop="114751"/>
          <exon e_start="113681" e_stop="113516"/>
          <exon e_start="113319" e_stop="113236"/>
          <exon e_start="112920" e_stop="112793"/>
          <exon e_start="112515" e_stop="112272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTGGACAACCATATGGATCGCATAAGCATTACAATGTAATTGGATTCTTACCTCTCTGATTCATCTTCTGGACAATGTTAACTTCCCTCTTTACTTGGGTGTCAGTTTTCACCAAACTTGATGTCTTACTGAATCACCCAATTTAAAGTTATACTTACATACTTGTTTGGTTTAGATTATTTGGTACTCCTTCTAACCCATATTGTTTGATCTACTTATCTTAGTCTGTGCAAGATATAACTTCTTTCCTCAAATTGCAAAGGCCAACGATTATAAAATATTGGATTAACATATCATGATATTACTTCCTATTGTTTTGTATTTAATGCGACTTATCTTCCCGCCAGTACACCAACTTATATGACTAACTTATGGGTATAATAAATCATTCAAAAGTATAATATGTCATTCAAGCATTGTCCTCCTAAATTCCATTTAAATATAAGTCACCAAAAAAGGGATTGAAGTGAGCATTCAACTAAAAGATTTCTTAAGATTGGTAATAGCTCTGACTATTGATTCTTTTGTAACGTAACCAAACAAGTTGATAATAAAAAAATTTAATATAAAATGGTGATTAGATTGTGTCAAATGATCCAAACTTGAACAATGATTTCCAATTTTCTTTTCTCTTTTTTAAAGGAGACATGATGGCTTTGAACACATTGAAGTGTTCTTCAGATTGCGTTGGGCCCTCTGTCATTTTTAGTTCATGTATCAATTCACCAATTTTCATTTGCATTATTTAAAAACATTAATATCTATCCATTTATAATTAGTTGTTATTTCCAATTGCATCCTCTTTAGTCAACCTTGTGATGCATTCATGATTGTTCTTGTATTGTCAAATTCAACTTCTCAATAAAAATATTTTACAGTTTCTCTGCCATTTGTCTGCAATATCCGCAGTTAATGTCCTTTCTTACCACTTAAATACTTGCTTGTTAACTTTTCTACTGTTTAGCTTCTGCTGGTGTAGTTGCTCTCATGTCCTATATGTTAGATTAATTTCAGTATCTTGAGCATATCGTCGTGCCCGAGTTTCCCAAGAAATAGGAGGCTTAACATTTTACTTTTTCTTATGAAATTAATTAATATGAGAAGGTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAGGTAATTAAAGACAATTTGGTTCTCTCTTTTTATTTTTAATATTCCAGGTAATATCTTCTGTTGAGATCATGATTCCAGTGTGTTCTGACCACCTATTATGCTTTAGGTTTGTGTCCTCAAGTTTCGAGCAATCATCATCCTGTGTGATTTGATTTCCAATATTGATGCAGAAAGATTTGTGTCTTAATTCATGCAGGAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAGGTTCAGGAGCTCCTATTTCTATTACTCCCTCCGTTTCAAAAAGATTGGCCTAGTTTGACTTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAATTTAAAGCTATGTCAAATGTATCAAAATACCTTTTAATCTTGTGGTCTTATACATGTCATGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGAAAATGGGTCATTCTTTTTGAAACAAACTAAAAAGGAAATAAGGTCATTCTTTTTTAAATGGAGGGAGTATTATTTTTCCTTCTGTTTATGGATTATCAAATATGATAAATAAATTTCAGGGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAGGTTTGAGATTTTCTGATTTTTCAATTGATTGCTTCAGTCCCTATTGTGATAGTTATGGTGTAACAAATTGTACCTTGGCACGTTAACCCTTTGCATTGTTCTGCCTTGTAAATGAAATGCATCAAACAAAATTAATGCCTTGTGAAGAATCGTCTAAGACAACTGAAAACAGTCAAGTGTATTACTGAAATCAGATCACCATTATTTTTTCTTTATTGTTTCTAGTATGACCATTTGGAAAGAATTGCCAGAATGATGGTGCTATGAACTTCGGCAGGTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATA</genome_strand>
        <mrna_strand>ATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAG....................................................................................................................................................................................................GAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG...........................................................................................................................................................................................................................................................................................................................GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG.....................................................................................................................................................................................................................................................................................GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201461" ref_strand="+" ref_description="SGN-E201461 [cLEC-4-O13]">
      <seq>atagttggacaaccatatggatcgcataagcattacaatgtaaatggaatgccaataactgtgggagtgggaaatatcatctctgaagaaggttatttactactgatgtctccagctgctgctgaatcggtctggaaagctattctaggtcatggtgctgtcccaatgggttctaatgcatgggaaactttaaggattcttcaaggaagaccagctcctggtaaagagctcacagacgagtttaatgttctggaggctaatctgtggaatgctgtttctctgaataaagggtgctataagggccaagaaaccattgctagacttgtaacttacgatggcatcaagcagagactatggggaatacgtgtctcatcgcctgtggaacctggtagcactatctcagttaatgggaaaaaggttggcaaggtgacgagtttcacaactggtaaacgagcatctcagcccctcggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="115089" stop="112158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114789" g_stop="114751" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113681" g_stop="113516" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="205" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113515" i_stop="113320" i_length="196">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113319" g_stop="113236" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="289" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112920" g_stop="112793" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="417" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112515" g_stop="112458" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="475" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E201461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114789" e_stop="114751"/>
          <exon e_start="113681" e_stop="113516"/>
          <exon e_start="113319" e_stop="113236"/>
          <exon e_start="112920" e_stop="112793"/>
          <exon e_start="112515" e_stop="112458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTGGACAACCATATGGATCGCATAAGCATTACAATGTAATTGGATTCTTACCTCTCTGATTCATCTTCTGGACAATGTTAACTTCCCTCTTTACTTGGGTGTCAGTTTTCACCAAACTTGATGTCTTACTGAATCACCCAATTTAAAGTTATACTTACATACTTGTTTGGTTTAGATTATTTGGTACTCCTTCTAACCCATATTGTTTGATCTACTTATCTTAGTCTGTGCAAGATATAACTTCTTTCCTCAAATTGCAAAGGCCAACGATTATAAAATATTGGATTAACATATCATGATATTACTTCCTATTGTTTTGTATTTAATGCGACTTATCTTCCCGCCAGTACACCAACTTATATGACTAACTTATGGGTATAATAAATCATTCAAAAGTATAATATGTCATTCAAGCATTGTCCTCCTAAATTCCATTTAAATATAAGTCACCAAAAAAGGGATTGAAGTGAGCATTCAACTAAAAGATTTCTTAAGATTGGTAATAGCTCTGACTATTGATTCTTTTGTAACGTAACCAAACAAGTTGATAATAAAAAAATTTAATATAAAATGGTGATTAGATTGTGTCAAATGATCCAAACTTGAACAATGATTTCCAATTTTCTTTTCTCTTTTTTAAAGGAGACATGATGGCTTTGAACACATTGAAGTGTTCTTCAGATTGCGTTGGGCCCTCTGTCATTTTTAGTTCATGTATCAATTCACCAATTTTCATTTGCATTATTTAAAAACATTAATATCTATCCATTTATAATTAGTTGTTATTTCCAATTGCATCCTCTTTAGTCAACCTTGTGATGCATTCATGATTGTTCTTGTATTGTCAAATTCAACTTCTCAATAAAAATATTTTACAGTTTCTCTGCCATTTGTCTGCAATATCCGCAGTTAATGTCCTTTCTTACCACTTAAATACTTGCTTGTTAACTTTTCTACTGTTTAGCTTCTGCTGGTGTAGTTGCTCTCATGTCCTATATGTTAGATTAATTTCAGTATCTTGAGCATATCGTCGTGCCCGAGTTTCCCAAGAAATAGGAGGCTTAACATTTTACTTTTTCTTATGAAATTAATTAATATGAGAAGGTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAGGTAATTAAAGACAATTTGGTTCTCTCTTTTTATTTTTAATATTCCAGGTAATATCTTCTGTTGAGATCATGATTCCAGTGTGTTCTGACCACCTATTATGCTTTAGGTTTGTGTCCTCAAGTTTCGAGCAATCATCATCCTGTGTGATTTGATTTCCAATATTGATGCAGAAAGATTTGTGTCTTAATTCATGCAGGAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAGGTTCAGGAGCTCCTATTTCTATTACTCCCTCCGTTTCAAAAAGATTGGCCTAGTTTGACTTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAATTTAAAGCTATGTCAAATGTATCAAAATACCTTTTAATCTTGTGGTCTTATACATGTCATGTGGAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGAAAATGGGTCATTCTTTTTGAAACAAACTAAAAAGGAAATAAGGTCATTCTTTTTTAAATGGAGGGAGTATTATTTTTCCTTCTGTTTATGGATTATCAAATATGATAAATAAATTTCAGGGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAGGTTTGAGATTTTCTGATTTTTCAATTGATTGCTTCAGTCCCTATTGTGATAGTTATGGTGTAACAAATTGTACCTTGGCACGTTAACCCTTTGCATTGTTCTGCCTTGTAAATGAAATGCATCAAACAAAATTAATGCCTTGTGAAGAATCGTCTAAGACAACTGAAAACAGTCAAGTGTATTACTGAAATCAGATCACCATTATTTTTTCTTTATTGTTTCTAGTATGACCATTTGGAAAGAATTGCCAGAATGATGGTGCTATGAACTTCGGCAGGTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTG</genome_strand>
        <mrna_strand>ATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAG....................................................................................................................................................................................................GAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG...........................................................................................................................................................................................................................................................................................................................GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG.....................................................................................................................................................................................................................................................................................GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706262" ref_strand="+" ref_description="SGN-E706262 [FA29BH07]">
      <seq>cggtaagagagatggcgtctctctactctgcaaatttgttatttccctctcttcctttttcttcttcatcatccctacttatgccactaccttaccggccatacgatgtgtcgccggcgaagattaatcgacgcctttcttcttctttttcttctgctgcgctgccattcgatctttctcctcctcccatcgaccacgacctcctcgatactatgacaattgctggggcaaaggtatcagaagatggggtaatagggacattcgataatgacgaggaggcattagatgctgttgagaatggtgttgcggttgtggatctttcacactatggcaggataagagttagtggagaagacagggttcagtttcttcacaaccaaagtactgctaactttgaaattcttcatgaggggcagggatgtgacactgtttttgtgacaccaactgctagaaccatcgatattgcccatgcctgggttatgaaaacggcaatcacattagtggtctctccagtgaccagggaaagaataactcatatgcttgagaagtacatattctttgcagacaaagttgaaattcaagatattaccgagaaaacgtccttgttcttactagtagggcctacaagtaacaaaataatggaggctctgagtcttgctgacatagttggacaaccatatggatcgcataagcattacaatgtaaatggaatgccaataactgtgggagtgggaaatatcatctctgaagaaagttatttactactgatgtctccagctgctgctgaatcggtctggaaagctattctaggtcatggtgctgtccccatgggttctaatgcatgggaaactttaaggattcttcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="117513" stop="113215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117215" g_stop="117010" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116332" g_stop="116231" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="308" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115988" g_stop="115955" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="342" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115553" g_stop="115480" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="416" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115479" i_stop="115393" i_length="87">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115392" g_stop="115327" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="482" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115217" g_stop="115153" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="547" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115152" i_stop="115012" i_length="141">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115011" g_stop="114924" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="635" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="114816" g_stop="114751" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="701" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="113681" g_stop="113516" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="867" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E706262" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117215" e_stop="117010"/>
          <exon e_start="116332" e_stop="116231"/>
          <exon e_start="115988" e_stop="115955"/>
          <exon e_start="115553" e_stop="115480"/>
          <exon e_start="115392" e_stop="115327"/>
          <exon e_start="115217" e_stop="115153"/>
          <exon e_start="115011" e_stop="114924"/>
          <exon e_start="114816" e_stop="114751"/>
          <exon e_start="113681" e_stop="113516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGAGAGATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTCGTTAGTACCAAATTCTTAAACTTGTTTCTTAGTATTCTGAGTTGTTAATTCTTGATTTTTTGGAAGTTAACGTGATTCTGGGCTTTCACAAGTACCAAATTAAATAGACACAACCTGCTTTTTATTGTTTCTGAGTTGGTAATTCTTGATTCTTAGAGTGTGGGTTTTGATAAATTCCAAATTCTTATATTTTCTTAATCTTGAAAGTCAGTTGGCTGTAGCATGTGTGAAGAAGGAAGACTGATTGTGGACTTTTGTGAGACGTAATCATTTCTTTCCTAATCTTTTTGATGTAGAATTGTCCTGTTCAATGTACTATCTTGCTGGGTAAAAATAATTGAACTATTTGGATTATCAATCCTAAAGCTTTGAAAATAAATTTTCCTTTCTGAAGGAAAAATCAAAACAAATACTTAATGTAATGGGGGTGGGGTAGACAAGTCTTATTGGCTATGGGTGCCCTCCATCCACCCCTGCTTGGAATGTCTCACTTCAGTAGGCAGTTAAGACTTAAAAAATCTTTTTTCTGTACGATGAGTGTACACGAAGGACATGTTACCTCTGCTAAATGTTTCCTGATGATCAAGGGAAGGATGAGAGTCACTGACCTGATGTTTCTACATGCTTTCATTGTTGGTCTCCTTAGATTTGGCTTGTTTAACTTTTTCTTCCTGCAGGATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCGGTGTGTATCTAGCTTGATTCAGGTTTTCTTGGTAATTTTAGTTATTTTTTCCTATTAAAAATCTGCATGTCATATAAATTTCATCTGTTGATTAAAAGACGTGTAATGGTCCAACTTTCCTATCACATGTTGTATATTTTACTGCCATATCTGGAATGAGCCTGGCCTTTTAAGGGAACTTGTATACTGCTCATCTTAGTCTTTCAAAGTGTGATCTGATGGCATCATTCAATTTGTTCTAGGTTGTGGATCTTTCACACTATGGCAGGATAAGAGGTAAATCCATCCACACATTTTCATTGTGAAAATGATTCTGTTTTATTTTATAAGACAACTCCAAGTTTAATCTGTGAATAATCTATTGACGTGGAGGAATAGAGGTTAGGTTAGTTTTTAATGTATCTTAAAGTAAGTCCATTATCCATACTATTCTTCTAATAAAATAGTAAATTCTTCCTACTTAAACAATTCTGTGGAATGTGGTTGTTTGCTTATTTCCTAGTGCGAGTCATGTGGATAATGGATGTGAAAATTACTTTTTACGACTTGTTCTTGTGCTAGTGATGTATTGTGGACTAACTGGATATAAGTTTTTCTACTTCTTTGAATTGTTTTGGAGGTTACTTATTCATAGTTGTTATTTCAGCTATCTATGTCTGTCTTTTTATTTCACACAGTTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTATTGATTCGGTTTCCACAACTCTAGGTTGATGAAAATAGCAAACTCCACTAATGTGCTTTTATATTTCATGCCTGGGAATTGTAGGGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATGGTAATCCTTCACAGCTCCCTTGCTGAGAATTGGTTTCTTGTGCCTAAGCTTTCATATGTTAAGACTATTATTTAAGTACTATTATTGAAGTGGACATTATATTTCACAGAAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAAGTATGTATGGAACTGCCATGGTTTTGCTCTGAATTGCTGTCACTCTTGCTTACCTATGCTTCAATAGTTTTTTGGGGCCTAACCAGTTATTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAAGTAAGAACTGTGTCTAGTTAATCATCAAACAAGGTGATAATATTTGTTATCTTCTTACTTCACTTAAAAGGTACAACTAACTTTTGTATGTAATGGCTTACAAACAGATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAATGTAATTGGATTCTTACCTCTCTGATTCATCTTCTGGACAATGTTAACTTCCCTCTTTACTTGGGTGTCAGTTTTCACCAAACTTGATGTCTTACTGAATCACCCAATTTAAAGTTATACTTACATACTTGTTTGGTTTAGATTATTTGGTACTCCTTCTAACCCATATTGTTTGATCTACTTATCTTAGTCTGTGCAAGATATAACTTCTTTCCTCAAATTGCAAAGGCCAACGATTATAAAATATTGGATTAACATATCATGATATTACTTCCTATTGTTTTGTATTTAATGCGACTTATCTTCCCGCCAGTACACCAACTTATATGACTAACTTATGGGTATAATAAATCATTCAAAAGTATAATATGTCATTCAAGCATTGTCCTCCTAAATTCCATTTAAATATAAGTCACCAAAAAAGGGATTGAAGTGAGCATTCAACTAAAAGATTTCTTAAGATTGGTAATAGCTCTGACTATTGATTCTTTTGTAACGTAACCAAACAAGTTGATAATAAAAAAATTTAATATAAAATGGTGATTAGATTGTGTCAAATGATCCAAACTTGAACAATGATTTCCAATTTTCTTTTCTCTTTTTTAAAGGAGACATGATGGCTTTGAACACATTGAAGTGTTCTTCAGATTGCGTTGGGCCCTCTGTCATTTTTAGTTCATGTATCAATTCACCAATTTTCATTTGCATTATTTAAAAACATTAATATCTATCCATTTATAATTAGTTGTTATTTCCAATTGCATCCTCTTTAGTCAACCTTGTGATGCATTCATGATTGTTCTTGTATTGTCAAATTCAACTTCTCAATAAAAATATTTTACAGTTTCTCTGCCATTTGTCTGCAATATCCGCAGTTAATGTCCTTTCTTACCACTTAAATACTTGCTTGTTAACTTTTCTACTGTTTAGCTTCTGCTGGTGTAGTTGCTCTCATGTCCTATATGTTAGATTAATTTCAGTATCTTGAGCATATCGTCGTGCCCGAGTTTCCCAAGAAATAGGAGGCTTAACATTTTACTTTTTCTTATGAAATTAATTAATATGAGAAGGTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAG</genome_strand>
        <mrna_strand>CGGTAAGAGAGATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG..................................................................................................................................................................................................................................................GTTGTGGATCTTTCACACTATGGCAGGATAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAG.......................................................................................GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG.............................................................................................................AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAA.............................................................................................................................................GTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAA...........................................................................................................ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAAGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCCATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316986" ref_strand="+" ref_description="SGN-E316986 [cTOA-27-N18]">
      <seq>tgttatttccctctcttcctttttcttcttcatcatccctacttatgccactaccttaccggccatacgatgtgtcgccggcgaagattaatcgacgcctttcttcttctttttcttctgctgcgctgccattcgatctttctcctcctcccatcgaccacgacctcctcgatactatgacaattgctggggcaaaggtatcagaagatggggtaatagggacattcgataatgacgaggaggcattagatgctgttgagaatggtgttgcggttgtggatctttcacactatggcaggataagagttagtggagaagacagggttcagtttcttcacaaccaaagtactgctaactttgaaattcttcatgaggggcagggatgtgacactgtttttgtgacaccaactgctagaaccatcgatattgcccatgcctgggttatgaaaacggcaatcacattagtggtctctccagtgaccagggaaagaataactcatatgcttgagaagtacatattctttgcagacaaagttgaaattcaagatattaccgagaaaacgtccttgttcttactagtagggcctacaagtaacaaaataatggaggctctgagtcttgctgacatagttggacaaccatatggatcgcataagcattacaatgtaaatgggatgccaataactgtgggagtgggaaatatcatctctgaagaaggtatttactactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="117479" stop="113314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117179" g_stop="117010" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116332" g_stop="116231" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="272" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115988" g_stop="115955" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="306" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115553" g_stop="115480" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="380" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115479" i_stop="115393" i_length="87">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115392" g_stop="115327" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="446" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115217" g_stop="115153" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="511" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115152" i_stop="115012" i_length="141">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115011" g_stop="114924" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="599" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="114816" g_stop="114751" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="665" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="113681" g_stop="113614" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="732" r_length="67" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E316986" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117179" e_stop="117010"/>
          <exon e_start="116332" e_stop="116231"/>
          <exon e_start="115988" e_stop="115955"/>
          <exon e_start="115553" e_stop="115480"/>
          <exon e_start="115392" e_stop="115327"/>
          <exon e_start="115217" e_stop="115153"/>
          <exon e_start="115011" e_stop="114924"/>
          <exon e_start="114816" e_stop="114751"/>
          <exon e_start="113681" e_stop="113614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTCGTTAGTACCAAATTCTTAAACTTGTTTCTTAGTATTCTGAGTTGTTAATTCTTGATTTTTTGGAAGTTAACGTGATTCTGGGCTTTCACAAGTACCAAATTAAATAGACACAACCTGCTTTTTATTGTTTCTGAGTTGGTAATTCTTGATTCTTAGAGTGTGGGTTTTGATAAATTCCAAATTCTTATATTTTCTTAATCTTGAAAGTCAGTTGGCTGTAGCATGTGTGAAGAAGGAAGACTGATTGTGGACTTTTGTGAGACGTAATCATTTCTTTCCTAATCTTTTTGATGTAGAATTGTCCTGTTCAATGTACTATCTTGCTGGGTAAAAATAATTGAACTATTTGGATTATCAATCCTAAAGCTTTGAAAATAAATTTTCCTTTCTGAAGGAAAAATCAAAACAAATACTTAATGTAATGGGGGTGGGGTAGACAAGTCTTATTGGCTATGGGTGCCCTCCATCCACCCCTGCTTGGAATGTCTCACTTCAGTAGGCAGTTAAGACTTAAAAAATCTTTTTTCTGTACGATGAGTGTACACGAAGGACATGTTACCTCTGCTAAATGTTTCCTGATGATCAAGGGAAGGATGAGAGTCACTGACCTGATGTTTCTACATGCTTTCATTGTTGGTCTCCTTAGATTTGGCTTGTTTAACTTTTTCTTCCTGCAGGATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCGGTGTGTATCTAGCTTGATTCAGGTTTTCTTGGTAATTTTAGTTATTTTTTCCTATTAAAAATCTGCATGTCATATAAATTTCATCTGTTGATTAAAAGACGTGTAATGGTCCAACTTTCCTATCACATGTTGTATATTTTACTGCCATATCTGGAATGAGCCTGGCCTTTTAAGGGAACTTGTATACTGCTCATCTTAGTCTTTCAAAGTGTGATCTGATGGCATCATTCAATTTGTTCTAGGTTGTGGATCTTTCACACTATGGCAGGATAAGAGGTAAATCCATCCACACATTTTCATTGTGAAAATGATTCTGTTTTATTTTATAAGACAACTCCAAGTTTAATCTGTGAATAATCTATTGACGTGGAGGAATAGAGGTTAGGTTAGTTTTTAATGTATCTTAAAGTAAGTCCATTATCCATACTATTCTTCTAATAAAATAGTAAATTCTTCCTACTTAAACAATTCTGTGGAATGTGGTTGTTTGCTTATTTCCTAGTGCGAGTCATGTGGATAATGGATGTGAAAATTACTTTTTACGACTTGTTCTTGTGCTAGTGATGTATTGTGGACTAACTGGATATAAGTTTTTCTACTTCTTTGAATTGTTTTGGAGGTTACTTATTCATAGTTGTTATTTCAGCTATCTATGTCTGTCTTTTTATTTCACACAGTTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTATTGATTCGGTTTCCACAACTCTAGGTTGATGAAAATAGCAAACTCCACTAATGTGCTTTTATATTTCATGCCTGGGAATTGTAGGGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATGGTAATCCTTCACAGCTCCCTTGCTGAGAATTGGTTTCTTGTGCCTAAGCTTTCATATGTTAAGACTATTATTTAAGTACTATTATTGAAGTGGACATTATATTTCACAGAAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAAGTATGTATGGAACTGCCATGGTTTTGCTCTGAATTGCTGTCACTCTTGCTTACCTATGCTTCAATAGTTTTTTGGGGCCTAACCAGTTATTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAAGTAAGAACTGTGTCTAGTTAATCATCAAACAAGGTGATAATATTTGTTATCTTCTTACTTCACTTAAAAGGTACAACTAACTTTTGTATGTAATGGCTTACAAACAGATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAATGTAATTGGATTCTTACCTCTCTGATTCATCTTCTGGACAATGTTAACTTCCCTCTTTACTTGGGTGTCAGTTTTCACCAAACTTGATGTCTTACTGAATCACCCAATTTAAAGTTATACTTACATACTTGTTTGGTTTAGATTATTTGGTACTCCTTCTAACCCATATTGTTTGATCTACTTATCTTAGTCTGTGCAAGATATAACTTCTTTCCTCAAATTGCAAAGGCCAACGATTATAAAATATTGGATTAACATATCATGATATTACTTCCTATTGTTTTGTATTTAATGCGACTTATCTTCCCGCCAGTACACCAACTTATATGACTAACTTATGGGTATAATAAATCATTCAAAAGTATAATATGTCATTCAAGCATTGTCCTCCTAAATTCCATTTAAATATAAGTCACCAAAAAAGGGATTGAAGTGAGCATTCAACTAAAAGATTTCTTAAGATTGGTAATAGCTCTGACTATTGATTCTTTTGTAACGTAACCAAACAAGTTGATAATAAAAAAATTTAATATAAAATGGTGATTAGATTGTGTCAAATGATCCAAACTTGAACAATGATTTCCAATTTTCTTTTCTCTTTTTTAAAGGAGACATGATGGCTTTGAACACATTGAAGTGTTCTTCAGATTGCGTTGGGCCCTCTGTCATTTTTAGTTCATGTATCAATTCACCAATTTTCATTTGCATTATTTAAAAACATTAATATCTATCCATTTATAATTAGTTGTTATTTCCAATTGCATCCTCTTTAGTCAACCTTGTGATGCATTCATGATTGTTCTTGTATTGTCAAATTCAACTTCTCAATAAAAATATTTTACAGTTTCTCTGCCATTTGTCTGCAATATCCGCAGTTAATGTCCTTTCTTACCACTTAAATACTTGCTTGTTAACTTTTCTACTGTTTAGCTTCTGCTGGTGTAGTTGCTCTCATGTCCTATATGTTAGATTAATTTCAGTATCTTGAGCATATCGTCGTGCCCGAGTTTCCCAAGAAATAGGAGGCTTAACATTTTACTTTTTCTTATGAAATTAATTAATATGAGAAGGTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGAT</genome_strand>
        <mrna_strand>TGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG..................................................................................................................................................................................................................................................GTTGTGGATCTTTCACACTATGGCAGGATAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAG.......................................................................................GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG.............................................................................................................AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAA.............................................................................................................................................GTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAA...........................................................................................................ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGGATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGG-TATTTACTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721219" ref_strand="+" ref_description="SGN-E721219 [FC13AE06]">
      <seq>atggcgtctctctactctgcaaatttgttatttccctctcttcctttttcttcttcatcatccctacttatgccactaccttaccggccatacaatgtgtcgccggcgaagattaatcgacgcctttcttcttctttttcttctgctgcgctgccattcgatctttctcctcctcccatcgaccacgacctcctcgatactatgacaattgctggggcaaaggtatcagaagatggggtaatagggacattcgataatgacgaggaggcattagatgctgttgagaatggtgttgcggttgtggatctttcacactatggcaggataaaagttagtggagaagacagggttcagtttcttcacaaccaaagtactgctaattttgaaattcttcatgaggggcagggatgtgacactgtttttgtgacaccaactgctagaaccatcgatattgcccatgcctgggttatgaaaacggcaatcacattagtggtctctccagtgaccagggaaagaataactcatatgcttgagaagtacatattctttgcagacaaagttgaaattcaagatattaccgagaaaacgtccttgttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="117504" stop="114648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117204" g_stop="117010" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116332" g_stop="116231" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="297" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115988" g_stop="115955" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="331" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115553" g_stop="115480" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="405" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115479" i_stop="115393" i_length="87">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115392" g_stop="115327" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="471" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115217" g_stop="115153" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="536" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115152" i_stop="115012" i_length="141">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115011" g_stop="114948" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="600" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E721219" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117204" e_stop="117010"/>
          <exon e_start="116332" e_stop="116231"/>
          <exon e_start="115988" e_stop="115955"/>
          <exon e_start="115553" e_stop="115480"/>
          <exon e_start="115392" e_stop="115327"/>
          <exon e_start="115217" e_stop="115153"/>
          <exon e_start="115011" e_stop="114948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTCGTTAGTACCAAATTCTTAAACTTGTTTCTTAGTATTCTGAGTTGTTAATTCTTGATTTTTTGGAAGTTAACGTGATTCTGGGCTTTCACAAGTACCAAATTAAATAGACACAACCTGCTTTTTATTGTTTCTGAGTTGGTAATTCTTGATTCTTAGAGTGTGGGTTTTGATAAATTCCAAATTCTTATATTTTCTTAATCTTGAAAGTCAGTTGGCTGTAGCATGTGTGAAGAAGGAAGACTGATTGTGGACTTTTGTGAGACGTAATCATTTCTTTCCTAATCTTTTTGATGTAGAATTGTCCTGTTCAATGTACTATCTTGCTGGGTAAAAATAATTGAACTATTTGGATTATCAATCCTAAAGCTTTGAAAATAAATTTTCCTTTCTGAAGGAAAAATCAAAACAAATACTTAATGTAATGGGGGTGGGGTAGACAAGTCTTATTGGCTATGGGTGCCCTCCATCCACCCCTGCTTGGAATGTCTCACTTCAGTAGGCAGTTAAGACTTAAAAAATCTTTTTTCTGTACGATGAGTGTACACGAAGGACATGTTACCTCTGCTAAATGTTTCCTGATGATCAAGGGAAGGATGAGAGTCACTGACCTGATGTTTCTACATGCTTTCATTGTTGGTCTCCTTAGATTTGGCTTGTTTAACTTTTTCTTCCTGCAGGATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCGGTGTGTATCTAGCTTGATTCAGGTTTTCTTGGTAATTTTAGTTATTTTTTCCTATTAAAAATCTGCATGTCATATAAATTTCATCTGTTGATTAAAAGACGTGTAATGGTCCAACTTTCCTATCACATGTTGTATATTTTACTGCCATATCTGGAATGAGCCTGGCCTTTTAAGGGAACTTGTATACTGCTCATCTTAGTCTTTCAAAGTGTGATCTGATGGCATCATTCAATTTGTTCTAGGTTGTGGATCTTTCACACTATGGCAGGATAAGAGGTAAATCCATCCACACATTTTCATTGTGAAAATGATTCTGTTTTATTTTATAAGACAACTCCAAGTTTAATCTGTGAATAATCTATTGACGTGGAGGAATAGAGGTTAGGTTAGTTTTTAATGTATCTTAAAGTAAGTCCATTATCCATACTATTCTTCTAATAAAATAGTAAATTCTTCCTACTTAAACAATTCTGTGGAATGTGGTTGTTTGCTTATTTCCTAGTGCGAGTCATGTGGATAATGGATGTGAAAATTACTTTTTACGACTTGTTCTTGTGCTAGTGATGTATTGTGGACTAACTGGATATAAGTTTTTCTACTTCTTTGAATTGTTTTGGAGGTTACTTATTCATAGTTGTTATTTCAGCTATCTATGTCTGTCTTTTTATTTCACACAGTTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTATTGATTCGGTTTCCACAACTCTAGGTTGATGAAAATAGCAAACTCCACTAATGTGCTTTTATATTTCATGCCTGGGAATTGTAGGGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATGGTAATCCTTCACAGCTCCCTTGCTGAGAATTGGTTTCTTGTGCCTAAGCTTTCATATGTTAAGACTATTATTTAAGTACTATTATTGAAGTGGACATTATATTTCACAGAAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAAGTATGTATGGAACTGCCATGGTTTTGCTCTGAATTGCTGTCACTCTTGCTTACCTATGCTTCAATAGTTTTTTGGGGCCTAACCAGTTATTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTA</genome_strand>
        <mrna_strand>ATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACAATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG..................................................................................................................................................................................................................................................GTTGTGGATCTTTCACACTATGGCAGGATAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAATTTTGAAATTCTTCATGAGGGGCAG.......................................................................................GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG.............................................................................................................AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAA.............................................................................................................................................GTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708430" ref_strand="+" ref_description="SGN-E708430 [FA35DA03]">
      <seq>cctgttcccattggtggctatattgatactgtgatgtccctggtacttaaagaattagcttcagcggatgctacaaaccgaaggaacgcagcattttgtgttggcgagttgtgcaaaaatggtggtgatgctgctttgaaatattatggagatgccttacgtggcctttacccattgtttggcgaagctgagccagataatgcagtgagagacaatgctgctggtgcggtggcaaggatgataatggttcatccagagacaatcccactgaatcaggtgctacctgttttcttgaaagttcttcctctaaaagaagatcatgaagaatccatggcagtctacagttgcatatgcaatcttgtgttgtcatctaactctcagatcttatctttggttccggagttggtaaatgtttttgcccaggttgccatgtcacctgttgaaacccctgaagtcaaggctcatgttggaaaagcattttctcacctaatttcgatttatggtcatcaaatgcagcctcttctgagtaatctttcacctgcacatgctaatgctcttgcaactattgcacctcagagctgacatgtaaagagcctttgagaagagcaagttttatatattgtgttcctgtaatattgaatattatcttattcatcagacacatccatggtggaagagcagctaattaggctgatcgcgtccaggtttgcgtcattttatttttttgccaggtgtcaaagttttccatggagatgcaatatcttccattttgacatattctacagaagagttgtcttttctttctactttcagggtgatgtgatggaggaaaaggggggtgggggtgggggttgttacccatttttagattgttttatttatttgttacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="121940" stop="119618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121642" g_stop="121616" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121615" i_stop="121497" i_length="119">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121496" g_stop="121384" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="140" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121383" i_stop="121240" i_length="144">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121239" g_stop="121104" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="276" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121103" i_stop="121016" i_length="88">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121015" g_stop="120911" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="381" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120910" i_stop="120672" i_length="239">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120671" g_stop="120349" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="704" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120348" i_stop="120105" i_length="244">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120104" g_stop="119918" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="892" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="SGN-E708430" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121642" e_stop="121616"/>
          <exon e_start="121496" e_stop="121384"/>
          <exon e_start="121239" e_stop="121104"/>
          <exon e_start="121015" e_stop="120911"/>
          <exon e_start="120671" e_stop="120349"/>
          <exon e_start="120104" e_stop="119918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTCCCATTGGTGGCTATATTGATGTAAGATTTTAAAAACTAGTTAATTGATTCTTTTCTTCTCCTCTACAACACACACACACACACACACACACTTTTTGATAGTTCTGCAACTGAATTGGGGAATATTAATCCTTCTTCAGACTGTGATGTCCCTGGTACTTAAAGAATTAGCTTCAGCGGATGCTACAAACCGAAGGAACGCAGCATTTTGTGTTGGCGAGTTGTGCAAAAATGGTGGTGATGCTGCTTTGAAGTATGCTTTCGGTTGCATACCTTGTTTACCATCTACTTCTGTTCCTAATATACGTTCTGAGTTTGTGGGGTTGTAGCCACTGATTATTTACCATTTACCTTCTTTGTTGGCACATCTAAATCTGAGTTATTCACTTTATTCTAGATATTATGGAGATGCCTTACGTGGCCTTTACCCATTGTTTGGCGAAGCTGAGCCAGATAATGCAGTGAGAGACAATGCTGCTGGTGCGGTGGCAAGGATGATAATGGTTCATCCAGAGACAATCCCACTGAATCAGGTGGAGAATTTGATGTTTCTATTGTTTATGGCTTTGAAGGTTTCCCTCTATTTGTCATGGTCGTTATATATTGTTGTACTTTCTTTAGGTGCTACCTGTTTTCTTGAAAGTTCTTCCTCTAAAAGAAGATCATGAAGAATCCATGGCAGTCTACAGTTGCATATGCAATCTTGTGTTGTCATCTAACTCTCAGGTATTTTCATGTCTCATCTTATCTGTTACAAAGTCTATCGGAAACAGTCTCTCTACCTTCACAAGGTAGGGGTAAGGCTGCATACACAACACCCCCCAGACCCCACTTGTGGATTACATTTGTATGCTGTTGTATCTTATCTGTCATGTTAGTTATCATTCTTGTTTCCTATGTCTTCATATTCTGTGGAATGTAATATTAAACGCATCTTTACTTCTGTTTGTTTTGTGAATATACAGATCTTATCTTTGGTTCCGGAGTTGGTAAATGTTTTTGCCCAGGTTGCCATGTCACCTGTTGAAACCCCTGAAGTCAAGGCTCATGTTGGAAAAGCATTTTCTCACCTAATTTCGATTTATGGTCATCAAATGCAGCCTCTTCTGAGTAATCTTTCACCTGCACATGCTAATGCTCTTGCAACTATTGCACCTCAGAGCTGACATGTAAAGAGCCTTTGAGAAGAGCAAGTTTTATATATTGTGTTCCTGTAATATTGAATATTATCTTATTCATCAGACACATCCATGGTGGAAGAGCAGCTAATTAGGCTGATCGCGTCCAGGTATAGTCTTATCTAGAGCATTGTTATCATTCTTCCTTCAAACTAAAGATGCAACATACATGTCATCGATATGTCATTATTTTAATCAATTATCTTTGTGCAAAGACAAGCCTGAGATAACGGTAGTTCCATTCTTTTATTCTCTAATAATGTTCCAGACTTTGAACAAATCATAAATGGATGTTTAGTTCTGCTTTGTTTGTCTATCAAGGGTAATTTACTAAAAGAAATTGTTATTTTGCAGGTTTGCGTCATTTTATTTTTTTGCCAGGTGTCAAAGTTTTCCATGGAGATGCAATATCTTCCATTTTGACATATTCTACAGAAGAGTTGTCTTTTCTTTCTACTTTCAGGGTGATGTGATGGAGGAAAAGGGGGGTGGGGGT-GGGGTTGTTAGCCATTTTTAGATTGTTTTATTTATTTGTTACAAT</genome_strand>
        <mrna_strand>CCTGTTCCCATTGGTGGCTATATTGAT.......................................................................................................................ACTGTGATGTCCCTGGTACTTAAAGAATTAGCTTCAGCGGATGCTACAAACCGAAGGAACGCAGCATTTTGTGTTGGCGAGTTGTGCAAAAATGGTGGTGATGCTGCTTTGAA................................................................................................................................................ATATTATGGAGATGCCTTACGTGGCCTTTACCCATTGTTTGGCGAAGCTGAGCCAGATAATGCAGTGAGAGACAATGCTGCTGGTGCGGTGGCAAGGATGATAATGGTTCATCCAGAGACAATCCCACTGAATCAG........................................................................................GTGCTACCTGTTTTCTTGAAAGTTCTTCCTCTAAAAGAAGATCATGAAGAATCCATGGCAGTCTACAGTTGCATATGCAATCTTGTGTTGTCATCTAACTCTCAG...............................................................................................................................................................................................................................................ATCTTATCTTTGGTTCCGGAGTTGGTAAATGTTTTTGCCCAGGTTGCCATGTCACCTGTTGAAACCCCTGAAGTCAAGGCTCATGTTGGAAAAGCATTTTCTCACCTAATTTCGATTTATGGTCATCAAATGCAGCCTCTTCTGAGTAATCTTTCACCTGCACATGCTAATGCTCTTGCAACTATTGCACCTCAGAGCTGACATGTAAAGAGCCTTTGAGAAGAGCAAGTTTTATATATTGTGTTCCTGTAATATTGAATATTATCTTATTCATCAGACACATCCATGGTGGAAGAGCAGCTAATTAGGCTGATCGCGTCCAG....................................................................................................................................................................................................................................................GTTTGCGTCATTTTATTTTTTTGCCAGGTGTCAAAGTTTTCCATGGAGATGCAATATCTTCCATTTTGACATATTCTACAGAAGAGTTGTCTTTTCTTTCTACTTTCAGGGTGATGTGATGGAGGAAAAGGGGGGTGGGGGTGGGGGTTGTTACCCATTTTTAGATTGTTTTATTTATTTGTTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>103</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3707" PGL_stop="1873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3707" e_stop="3532"/>
            <exon e_start="2711" e_stop="1873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.957" e_score="0.989"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="3707" e_stop="3532" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.957">
            <gDNA_intron_boundary i_start="3531" i_stop="2712" i_length="820"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="2711" e_stop="1873" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3707" stop="3532"/>
              <exon start="2711" stop="2057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2624" stop="1873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCTATGGATCATCTGTTGAAGCTTAAAAGTAACGTTCAGCGGCGACGTTTTGATCCTTCTGATCTCTTTCTCTATGCTGTTACTGACTCAAGGATGAACAAAAAGTGGGGTCGTTCAATAGTTGATGCAGTAAAGGCTGCCATAGAAGGAGGTGCCTCCATTATTCAGCTGAG : GGAAAAGGAGGTTGAAACTGGTGATTTTCTGGAAGCAGCAAAAGCTTGTTTAAAAATATGCCGAGTTCATGGTGTTCCTCTGCTGATTAATGATAGGATTGATGTAGCTCTTGCTAGTGATGCTGATGGTGTTCATATTGGACAGTCTGACATGCCTGCTCATGTTGCGCGGGCTCTTCTTGGGCCTGACAAAATCATTGGTGTATCATGCAAAACACCGGAGCACGCTCAGCAAGCATGGATAGATGGGGCTGATTACATCGGCTCTGGTGGTGTATATCCTACCAATACCAAAGAGAACAATAAAACAATTGGTTTGGATGGTCTAAAAACTGTTTGTGTGTCTTCCAAATTACCAGTTGTAGCCATTGGCGGCATAGGCATGTCTAATGCGCAGGCTGTAATGCAACTAGGGGTCCCAAACCTGAAAGGCGTTGCTGTTGTATCTGCTCTGTTTGATAGGGAATGTGTTATGACTGAGACCAGAAAGTTACTTGAAGTGCTCAAGGAGTCTACCAAAATAGCAAAATGAAGAAATGCTGGTGATCACCATACATTCTCTTACAGGCAATGCTACCCCGATTTTTGTTACTAAAATATTTCTTGATCAAATTTTTGGAAGTGAACTTTGGTCTAGAGAAGTTAATACAGGCACCGGAATGTTGATATCCTTTTGTCAATGCTGTGCTAGAGAGGTTTATGATATTTCACTTATCTTCTACAGTTTACTGTACGTATTCATTGCCAAGGTTGATGTTTTACTTTTCTTTTCAAGATATTTTTGAAGTCATATGCCTCTCATAGATTTCTGACCTTTGTTATATTATTCCTCGCCATTT</gDNA_template>
            <first_frame> G  P  M  D  H  L  L  K  L  K  S  N  V  Q  R  R  R  F  D  P  S  D  L  F  L  Y  A  V  T  D  S  R  M  N  K  K  W  G  R  S  I  V  D  A  V  K  A  A  I  E  G  G  A  S  I  I  Q  L  R :   E  K  E  V  E  T  G  D  F  L  E  A  A  K  A  C  L  K  I  C  R  V  H  G  V  P  L  L  I  N  D  R  I  D  V  A  L  A  S  D  A  D  G  V  H  I  G  Q  S  D  M  P  A  H  V  A  R  A  L  L  G  P  D  K  I  I  G  V  S  C  K  T  P  E  H  A  Q  Q  A  W  I  D  G  A  D  Y  I  G  S  G  G  V  Y  P  T  N  T  K  E  N  N  K  T  I  G  L  D  G  L  K  T  V  C  V  S  S  K  L  P  V  V  A  I  G  G  I  G  M  S  N  A  Q  A  V  M  Q  L  G  V  P  N  L  K  G  V  A  V  V  S  A  L  F  D  R  E  C  V  M  T  E  T  R  K  L  L  E  V  L  K  E  S  T  K  I  A  K  *  R  N  A  G  D  H  H  T  F  S  Y  R  Q  C  Y  P  D  F  C  Y  *  N  I  S  *  S  N  F  W  K  *  T  L  V  *  R  S  *  Y  R  H  R  N  V  D  I  L  L  S  M  L  C  *  R  G  L  *  Y  F  T  Y  L  L  Q  F  T  V  R  I  H  C  Q  G  *  C  F  T  F  L  F  K  I  F  L  K  S  Y  A  S  H  R  F  L  T  F  V  I  L  F  L  A  I  </first_frame>
            <second_frame>  V  L  W  I  I  C  *  S  L  K  V  T  F  S  G  D  V  L  I  L  L  I  S  F  S  M  L  L  L  T  Q  G  *  T  K  S  G  V  V  Q  *  L  M  Q  *  R  L  P  *  K  E  V  P  P  L  F  S  *   : G  K  R  R  L  K  L  V  I  F  W  K  Q  Q  K  L  V  *  K  Y  A  E  F  M  V  F  L  C  *  L  M  I  G  L  M  *  L  L  L  V  M  L  M  V  F  I  L  D  S  L  T  C  L  L  M  L  R  G  L  F  L  G  L  T  K  S  L  V  Y  H  A  K  H  R  S  T  L  S  K  H  G  *  M  G  L  I  T  S  A  L  V  V  Y  I  L  P  I  P  K  R  T  I  K  Q  L  V  W  M  V  *  K  L  F  V  C  L  P  N  Y  Q  L  *  P  L  A  A  *  A  C  L  M  R  R  L  *  C  N  *  G  S  Q  T  *  K  A  L  L  L  Y  L  L  C  L  I  G  N  V  L  *  L  R  P  E  S  Y  L  K  C  S  R  S  L  P  K  *  Q  N  E  E  M  L  V  I  T  I  H  S  L  T  G  N  A  T  P  I  F  V  T  K  I  F  L  D  Q  I  F  G  S  E  L  W  S  R  E  V  N  T  G  T  G  M  L  I  S  F  C  Q  C  C  A  R  E  V  Y  D  I  S  L  I  F  Y  S  L  L  Y  V  F  I  A  K  V  D  V  L  L  F  F  S  R  Y  F  *  S  H  M  P  L  I  D  F  *  P  L  L  Y  Y  S  S  P  F </second_frame>
            <third_frame>   S  Y  G  S  S  V  E  A  *  K  *  R  S  A  A  T  F  *  S  F  *  S  L  S  L  C  C  Y  *  L  K  D  E  Q  K  V  G  S  F  N  S  *  C  S  K  G  C  H  R  R  R  C  L  H  Y  S  A  E  :  G  K  G  G  *  N  W  *  F  S  G  S  S  K  S  L  F  K  N  M  P  S  S  W  C  S  S  A  D  *  *  *  D  *  C  S  S  C  *  *  C  *  W  C  S  Y  W  T  V  *  H  A  C  S  C  C  A  G  S  S  W  A  *  Q  N  H  W  C  I  M  Q  N  T  G  A  R  S  A  S  M  D  R  W  G  *  L  H  R  L  W  W  C  I  S  Y  Q  Y  Q  R  E  Q  *  N  N  W  F  G  W  S  K  N  C  L  C  V  F  Q  I  T  S  C  S  H  W  R  H  R  H  V  *  C  A  G  C  N  A  T  R  G  P  K  P  E  R  R  C  C  C  I  C  S  V  *  *  G  M  C  Y  D  *  D  Q  K  V  T  *  S  A  Q  G  V  Y  Q  N  S  K  M  K  K  C  W  *  S  P  Y  I  L  L  Q  A  M  L  P  R  F  L  L  L  K  Y  F  L  I  K  F  L  E  V  N  F  G  L  E  K  L  I  Q  A  P  E  C  *  Y  P  F  V  N  A  V  L  E  R  F  M  I  F  H  L  S  S  T  V  Y  C  T  Y  S  L  P  R  L  M  F  Y  F  S  F  Q  D  I  F  E  V  I  C  L  S  *  I  S  D  L  C  Y  I  I  P  R  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3707" stop="3532"/>
                    <exon start="2711" stop="2180"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPMDHLLKLKSNVQRRRFDPSDLFLYAVTDSRMNKKWGRSIVDAVKAAIEGGASIIQLREKEVETGDFLEAAKACLKICRVHGVPLLINDRIDVALASDADGVHIGQSDMPAHVARALLGPDKIIGVSCKTPEHAQQAWIDGADYIGSGGVYPTNTKENNKTIGLDGLKTVCVSSKLPVVAIGGIGMSNAQAVMQLGVPNLKGVAVVSALFDRECVMTETRKLLEVLKESTKIAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2187" stop="1927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNEEMLVITIHSLTGNATPIFVTKIFLDQIFGSELWSREVNTGTGMLISFCQCCAREVYDISLIFYSLLYVFIAKVDVLLFFSRYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8869" PGL_stop="5208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8869" e_stop="8817"/>
            <exon e_start="8713" e_stop="8441"/>
            <exon e_start="8353" e_stop="8279"/>
            <exon e_start="7259" e_stop="7184"/>
            <exon e_start="7109" e_stop="7034"/>
            <exon e_start="6640" e_stop="6506"/>
            <exon e_start="5262" e_stop="5208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.138" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.980" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.832" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.733" e_score="0.985"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="8869" e_stop="8817" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.138">
            <gDNA_intron_boundary i_start="8816" i_stop="8714" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="8713" e_stop="8441" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="8353" e_stop="8279" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8278" i_stop="7260" i_length="1019"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="7259" e_stop="7184" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7183" i_stop="7110" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7109" e_stop="7034" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.832" acc_prob="0.972">
            <gDNA_intron_boundary i_start="7033" i_stop="6641" i_length="393"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="6640" e_stop="6506" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.733">
            <gDNA_intron_boundary i_start="6505" i_stop="5263" i_length="1243"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="5262" e_stop="5208" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8869" stop="8817"/>
              <exon start="8713" stop="8441"/>
              <exon start="8353" stop="8279"/>
              <exon start="7259" stop="7184"/>
              <exon start="7109" stop="7034"/>
              <exon start="6640" stop="6506"/>
              <exon start="5262" stop="5208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8868" stop="8817"/>
              <exon start="8713" stop="8441"/>
              <exon start="8353" stop="8279"/>
              <exon start="7259" stop="7189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCATTTATGCTCTCAGGTTCTATCCACTTCCTTCTTCACTCCCAAACCTCAG : ATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG : GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTT : GTGAAAACAGGCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAG : CCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTTAG : GGAGGAGCTTCTTCCCATGGCCGATATAGTGACCCCAAATTTGAAAGAGGCTTCTGCTTTACTAGGCGGTGTGCCATTGGAAACAATTGCCGACATGCGTTCTGCTGCAAAAGCAATACATGACATTGGTCCAAG : AAATGTACTCGTGAAAGGAGGCGATCTCCCTGCTTCTCTTGATGCTGTGGATGTG</gDNA_template>
            <first_frame> R  I  Y  A  L  R  F  Y  P  L  P  S  S  L  P  N  L  R :   F  Q  F  C  *  V  P  A  *  L  V  S  K  A  F  I  S  I  G  F  C  T  S  R  R  C  K  T  V  S  L  P  R  L  R  R  A  M  S  P  K  L  E  F  L  M  F  *  R  L  P  G  P  I  P  A  P  A  P  E  F  K  R  I  S  R  L  V  L  L  G  E  C  I  A  P  L  *  S  R  L  L  L  L  K  I  P  *  G  F  R :   V  *  T  L  C  R  R  I  L  *  Q  S  S  *  D  R  S  F  P  I  C  R  P  M  L :   *  K  Q  A  C  F  R  Q  L  A  *  *  K  P  S  V  K  V  *  R  N  S  P  Y  K  :  P  W  W  L  T  L  L  W  Y  P  Q  V  D  I  H  *  L  V  P  L  F  W  I  A  L   : G  R  S  F  F  P  W  P  I  *  *  P  Q  I  *  K  R  L  L  L  Y  *  A  V  C  H  W  K  Q  L  P  T  C  V  L  L  Q  K  Q  Y  M  T  L  V  Q   : E  M  Y  S  *  K  E  A  I  S  L  L  L  L  M  L  W  M   </first_frame>
            <second_frame>  A  F  M  L  S  G  S  I  H  F  L  L  H  S  Q  T  S   : D  S  S  S  V  E  S  R  R  S  L  Y  Q  K  L  S  S  V  *  V  F  A  R  Q  G  D  A  R  R  *  V  C  H  A  Y  V  V  R  *  V  Q  S  *  S  S  S  C  S  D  G  C  R  V  R  F  R  R  R  R  R  N  S  S  G  Y  Q  G  L  C  C  S  G  S  V  L  L  H  C  D  H  G  C  Y  C  S  K  Y  R  R  G  S   : G  C  E  H  C  A  G  G  F  C  S  R  A  V  E  I  G  P  F  R  Y  A  A  Q  C   : C  E  N  R  H  A  S  V  N  W  H  S  E  N  P  L  S  K  S  E  G  I  P  R  T  S :   L  G  G  *  P  C  Y  G  I  H  K  W  T  Y  I  S  W  S  L  Y  F  G  *  L  *  :  G  G  A  S  S  H  G  R  Y  S  D  P  K  F  E  R  G  F  C  F  T  R  R  C  A  I  G  N  N  C  R  H  A  F  C  C  K  S  N  T  *  H  W  S  K  :  K  C  T  R  E  R  R  R  S  P  C  F  S  *  C  C  G  C  </second_frame>
            <third_frame>   H  L  C  S  Q  V  L  S  T  S  F  F  T  P  K  P  Q  :  I  P  V  L  L  S  P  G  V  A  C  I  K  S  F  H  Q  Y  R  F  L  H  V  K  A  M  Q  D  G  K  F  A  T  P  T  S  C  D  E  S  K  V  R  V  P  H  V  L  T  V  A  G  S  D  S  G  A  G  A  G  I  Q  A  D  I  K  A  C  A  A  R  G  V  Y  C  S  T  V  I  T  A  V  T  A  Q  N  T  V  G  V  Q  :  G  V  N  I  V  P  E  D  F  V  A  E  Q  L  R  S  V  L  S  D  M  P  P  N  V  :  V  K  T  G  M  L  P  S  T  G  I  V  K  T  L  C  Q  S  L  K  E  F  P  V  Q   : A  L  V  V  D  P  V  M  V  S  T  S  G  H  T  L  A  G  P  S  I  L  D  S  F  R :   E  E  L  L  P  M  A  D  I  V  T  P  N  L  K  E  A  S  A  L  L  G  G  V  P  L  E  T  I  A  D  M  R  S  A  A  K  A  I  H  D  I  G  P  R :   N  V  L  V  K  G  G  D  L  P  A  S  L  D  A  V  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8867" stop="8817"/>
                    <exon start="8713" stop="8441"/>
                    <exon start="8353" stop="8279"/>
                    <exon start="7259" stop="7184"/>
                    <exon start="7109" stop="7034"/>
                    <exon start="6640" stop="6506"/>
                    <exon start="5262" stop="5208"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLCSQVLSTSFFTPKPQIPVLLSPGVACIKSFHQYRFLHVKAMQDGKFATPTSCDESKVRVPHVLTVAGSDSGAGAGIQADIKACAARGVYCSTVITAVTAQNTVGVQGVNIVPEDFVAEQLRSVLSDMPPNVVKTGMLPSTGIVKTLCQSLKEFPVQALVVDPVMVSTSGHTLAGPSILDSFREELLPMADIVTPNLKEASALLGGVPLETIADMRSAAKAIHDIGPRNVLVKGGDLPASLDAVDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8851" e_stop="8817"/>
            <exon e_start="8713" e_stop="8441"/>
            <exon e_start="8353" e_stop="8279"/>
            <exon e_start="7249" e_stop="7184"/>
            <exon e_start="7109" e_stop="7034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.138" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8851" e_stop="8817" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.138">
            <gDNA_intron_boundary i_start="8816" i_stop="8714" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8713" e_stop="8441" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8353" e_stop="8279" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8278" i_stop="7250" i_length="1029"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7249" e_stop="7184" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7183" i_stop="7110" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7109" e_stop="7034" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8851" stop="8817"/>
              <exon start="8713" stop="8441"/>
              <exon start="8353" stop="8279"/>
              <exon start="7249" stop="7184"/>
              <exon start="7109" stop="7034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8851" stop="8817"/>
              <exon start="8713" stop="8441"/>
              <exon start="8353" stop="8279"/>
              <exon start="7249" stop="7184"/>
              <exon start="7109" stop="7036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTATCCACTTCCTTCTTCACTCCCAAACCTCAG : ATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG : GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTT : GCATGCTTCCGTCAACTGGCATAGTGAAAACCCTCTGTCAAAGTCTGAAGGAATTCCCCGTACAAG : CCTTGGTGGTTGACCCTGTTATGGTATCCACAAGTGGACATACATTAGCTGGTCCCTCTATTTTGGATAGCTTTAG</gDNA_template>
            <first_frame> F  Y  P  L  P  S  S  L  P  N  L  R :   F  Q  F  C  *  V  P  A  *  L  V  S  K  A  F  I  S  I  G  F  C  T  S  R  R  C  K  T  V  S  L  P  R  L  R  R  A  M  S  P  K  L  E  F  L  M  F  *  R  L  P  G  P  I  P  A  P  A  P  E  F  K  R  I  S  R  L  V  L  L  G  E  C  I  A  P  L  *  S  R  L  L  L  L  K  I  P  *  G  F  R :   V  *  T  L  C  R  R  I  L  *  Q  S  S  *  D  R  S  F  P  I  C  R  P  M  L :   H  A  S  V  N  W  H  S  E  N  P  L  S  K  S  E  G  I  P  R  T  S :   L  G  G  *  P  C  Y  G  I  H  K  W  T  Y  I  S  W  S  L  Y  F  G  *  L  * </first_frame>
            <second_frame>  S  I  H  F  L  L  H  S  Q  T  S   : D  S  S  S  V  E  S  R  R  S  L  Y  Q  K  L  S  S  V  *  V  F  A  R  Q  G  D  A  R  R  *  V  C  H  A  Y  V  V  R  *  V  Q  S  *  S  S  S  C  S  D  G  C  R  V  R  F  R  R  R  R  R  N  S  S  G  Y  Q  G  L  C  C  S  G  S  V  L  L  H  C  D  H  G  C  Y  C  S  K  Y  R  R  G  S   : G  C  E  H  C  A  G  G  F  C  S  R  A  V  E  I  G  P  F  R  Y  A  A  Q  C   : C  M  L  P  S  T  G  I  V  K  T  L  C  Q  S  L  K  E  F  P  V  Q   : A  L  V  V  D  P  V  M  V  S  T  S  G  H  T  L  A  G  P  S  I  L  D  S  F   </second_frame>
            <third_frame>   L  S  T  S  F  F  T  P  K  P  Q  :  I  P  V  L  L  S  P  G  V  A  C  I  K  S  F  H  Q  Y  R  F  L  H  V  K  A  M  Q  D  G  K  F  A  T  P  T  S  C  D  E  S  K  V  R  V  P  H  V  L  T  V  A  G  S  D  S  G  A  G  A  G  I  Q  A  D  I  K  A  C  A  A  R  G  V  Y  C  S  T  V  I  T  A  V  T  A  Q  N  T  V  G  V  Q  :  G  V  N  I  V  P  E  D  F  V  A  E  Q  L  R  S  V  L  S  D  M  P  P  N  V  :  A  C  F  R  Q  L  A  *  *  K  P  S  V  K  V  *  R  N  S  P  Y  K  :  P  W  W  L  T  L  L  W  Y  P  Q  V  D  I  H  *  L  V  P  L  F  W  I  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8849" stop="8817"/>
                    <exon start="8713" stop="8441"/>
                    <exon start="8353" stop="8279"/>
                    <exon start="7249" stop="7226"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTSFFTPKPQIPVLLSPGVACIKSFHQYRFLHVKAMQDGKFATPTSCDESKVRVPHVLTVAGSDSGAGAGIQADIKACAARGVYCSTVITAVTAQNTVGVQGVNIVPEDFVAEQLRSVLSDMPPNVACFRQLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8585" stop="8441"/>
                    <exon start="8353" stop="8279"/>
                    <exon start="7249" stop="7184"/>
                    <exon start="7109" stop="7036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSCSDGCRVRFRRRRRNSSGYQGLCCSGSVLLHCDHGCYCSKYRRGSGCEHCAGGFCSRAVEIGPFRYAAQCCMLPSTGIVKTLCQSLKEFPVQALVVDPVMVSTSGHTLAGPSILDSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8808" e_stop="8441"/>
            <exon e_start="8353" e_stop="8326"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.973"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="8808" e_stop="8441" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="8353" e_stop="8326" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8808" stop="8441"/>
              <exon start="8353" stop="8326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG : GGTGTGAACATTGTGCCGGAGGATTTTG</gDNA_template>
            <first_frame> P  F  L  R  L  L  P  *  H  I  Y  E  V  C  T  C  Y  E  K  K  L  H  S  I  L  I  *  I  S  I  V  R  F  Q  F  C  *  V  P  A  *  L  V  S  K  A  F  I  S  I  G  F  C  T  S  R  R  C  K  T  V  S  L  P  R  L  R  R  A  M  S  P  K  L  E  F  L  M  F  *  R  L  P  G  P  I  P  A  P  A  P  E  F  K  R  I  S  R  L  V  L  L  G  E  C  I  A  P  L  *  S  R  L  L  L  L  K  I  P  *  G  F  R :   V  *  T  L  C  R  R  I  L </first_frame>
            <second_frame>  H  S  F  A  C  Y  P  N  I  F  T  K  F  A  P  A  M  K  K  N  Y  T  R  F  S  Y  E  F  Q  L  L  D  S  S  S  V  E  S  R  R  S  L  Y  Q  K  L  S  S  V  *  V  F  A  R  Q  G  D  A  R  R  *  V  C  H  A  Y  V  V  R  *  V  Q  S  *  S  S  S  C  S  D  G  C  R  V  R  F  R  R  R  R  R  N  S  S  G  Y  Q  G  L  C  C  S  G  S  V  L  L  H  C  D  H  G  C  Y  C  S  K  Y  R  R  G  S   : G  C  E  H  C  A  G  G  F   </second_frame>
            <third_frame>   I  P  S  L  A  T  L  T  Y  L  R  S  L  H  L  L  *  K  K  T  T  L  D  S  H  M  N  F  N  C  *  I  P  V  L  L  S  P  G  V  A  C  I  K  S  F  H  Q  Y  R  F  L  H  V  K  A  M  Q  D  G  K  F  A  T  P  T  S  C  D  E  S  K  V  R  V  P  H  V  L  T  V  A  G  S  D  S  G  A  G  A  G  I  Q  A  D  I  K  A  C  A  A  R  G  V  Y  C  S  T  V  I  T  A  V  T  A  Q  N  T  V  G  V  Q  :  G  V  N  I  V  P  E  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8713" stop="8441"/>
                    <exon start="8353" stop="8327"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPVLLSPGVACIKSFHQYRFLHVKAMQDGKFATPTSCDESKVRVPHVLTVAGSDSGAGAGIQADIKACAARGVYCSTVITAVTAQNTVGVQGVNIVPEDF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29246" PGL_stop="32806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29246" e_stop="29590"/>
            <exon e_start="29711" e_stop="29907"/>
            <exon e_start="31240" e_stop="31350"/>
            <exon e_start="31867" e_stop="31918"/>
            <exon e_start="32263" e_stop="32460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29246" e_stop="29590" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29591" i_stop="29710" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29711" e_stop="29907" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.740" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29908" i_stop="31239" i_length="1332"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31240" e_stop="31350" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.886">
            <gDNA_intron_boundary i_start="31351" i_stop="31866" i_length="516"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31867" e_stop="31918" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32263" e_stop="32460" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29246" stop="29590"/>
              <exon start="29711" stop="29815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29246" stop="29590"/>
              <exon start="29711" stop="29797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29251" stop="29590"/>
              <exon start="29711" stop="29907"/>
              <exon start="31240" stop="31350"/>
              <exon start="31867" stop="31918"/>
              <exon start="32263" stop="32303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29261" stop="29590"/>
              <exon start="29711" stop="29907"/>
              <exon start="31240" stop="31350"/>
              <exon start="31867" stop="31918"/>
              <exon start="32263" stop="32425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29262" stop="29590"/>
              <exon start="29711" stop="29907"/>
              <exon start="31240" stop="31350"/>
              <exon start="31867" stop="31918"/>
              <exon start="32263" stop="32455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29283" stop="29590"/>
              <exon start="29711" stop="29907"/>
              <exon start="31240" stop="31350"/>
              <exon start="31867" stop="31918"/>
              <exon start="32263" stop="32460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29509" stop="29590"/>
              <exon start="29711" stop="29907"/>
              <exon start="31240" stop="31350"/>
              <exon start="31867" stop="31918"/>
              <exon start="32263" stop="32366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCATCCCCCACCTCGCTTCACTCTGCTTTTTCAACTAAAACTTGCAGAAATTGAAGAGCAAAAAACTGAAGGATCTGATATTTATTTTCTGAATTATTGTATAGTTTGATGGGGTGGTAAGAGATCAGCTCTCTGTAGAATTTTTCTTTATGAAAAACTATGAGGATTATGAAAAACCCTAACATATCTAGCTCGATTAAGGATGGAGATGTGAAGATGGAGGAGGAAGAAGGTGTAAAGAGAAGGAGGGAAAGTGAAAAGCCACCAGGGGATGACTGTTGTCCTATTTGCTTTGGGGATTTCTCAATTCCTTGTAAAACCAACTGTGGTCACTGGTTTTGTG : CTAATTGCATATTGCAGCTGTGGTACTACAGATCAACACTGCGGCGATGCAAGTGTCCAATATGCAGCTGCCTCATAAGTAAATTGGTACCGGAGGCATCATTACTTGTTCAACAGGAAAAGGATGTTGTCGAGCTGCTTAAAAAGATTAGGCGGTACAATCACATCTACATTAGTGGCGCTTATGGGATTTTTCTC : AAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCA : TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG : GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTTGTTGC</gDNA_template>
            <first_frame> C  H  P  P  P  R  F  T  L  L  F  Q  L  K  L  A  E  I  E  E  Q  K  T  E  G  S  D  I  Y  F  L  N  Y  C  I  V  *  W  G  G  K  R  S  A  L  C  R  I  F  L  Y  E  K  L  *  G  L  *  K  T  L  T  Y  L  A  R  L  R  M  E  M  *  R  W  R  R  K  K  V  *  R  E  G  G  K  V  K  S  H  Q  G  M  T  V  V  L  F  A  L  G  I  S  Q  F  L  V  K  P  T  V  V  T  G  F  V  :  L  I  A  Y  C  S  C  G  T  T  D  Q  H  C  G  D  A  S  V  Q  Y  A  A  A  S  *  V  N  W  Y  R  R  H  H  Y  L  F  N  R  K  R  M  L  S  S  C  L  K  R  L  G  G  T  I  T  S  T  L  V  A  L  M  G  F  F  S :   R  Y  *  H  C  R  F  *  L  G  E  F  S  E  H  *  W  T  L  *  W  I  L  I  K  F  D  *  T  I  T  *  C  A  F  S  H :   C  S  *  V  G  S  T  G  A  A  N  F  S  S  F  L  L  :  E  D  W  E  S  G  G  C  L  T  S  V  L  L  P  R  *  P  F  S  I  *  L  V  Y  T  I  D  G  C  F  V  V  V  *  D  S  W  L  F  Y  Q  Y  I  L  I  E  S  L  C  L  L  T  R  K  S  L  L  *  I  Y  L  N  V  C  C </first_frame>
            <second_frame>  V  I  P  H  L  A  S  L  C  F  F  N  *  N  L  Q  K  L  K  S  K  K  L  K  D  L  I  F  I  F  *  I  I  V  *  F  D  G  V  V  R  D  Q  L  S  V  E  F  F  F  M  K  N  Y  E  D  Y  E  K  P  *  H  I  *  L  D  *  G  W  R  C  E  D  G  G  G  R  R  C  K  E  K  E  G  K  *  K  A  T  R  G  *  L  L  S  Y  L  L  W  G  F  L  N  S  L  *  N  Q  L  W  S  L  V  L  C :   *  L  H  I  A  A  V  V  L  Q  I  N  T  A  A  M  Q  V  S  N  M  Q  L  P  H  K  *  I  G  T  G  G  I  I  T  C  S  T  G  K  G  C  C  R  A  A  *  K  D  *  A  V  Q  S  H  L  H  *  W  R  L  W  D  F  S   : Q  G  T  S  T  A  A  F  N  S  E  S  S  P  S  T  D  G  H  S  D  G  S  *  S  S  S  I  K  L  L  L  D  A  H  F  R   : I  V  P  E  L  D  L  L  G  L  R  I  S  V  H  S  Y  W :   R  T  G  N  L  E  V  V  *  H  L  C  Y  C  H  G  S  H  F  L  Y  S  W  S  I  P  *  M  G  A  S  S  S  C  E  T  V  G  C  S  T  N  T  S  *  L  K  A  Y  A  F  L  P  G  S  L  C  C  E  Y  I  S  M  F  V   </second_frame>
            <third_frame>   S  S  P  T  S  L  H  S  A  F  S  T  K  T  C  R  N  *  R  A  K  N  *  R  I  *  Y  L  F  S  E  L  L  Y  S  L  M  G  W  *  E  I  S  S  L  *  N  F  S  L  *  K  T  M  R  I  M  K  N  P  N  I  S  S  S  I  K  D  G  D  V  K  M  E  E  E  E  G  V  K  R  R  R  E  S  E  K  P  P  G  D  D  C  C  P  I  C  F  G  D  F  S  I  P  C  K  T  N  C  G  H  W  F  C   : A  N  C  I  L  Q  L  W  Y  Y  R  S  T  L  R  R  C  K  C  P  I  C  S  C  L  I  S  K  L  V  P  E  A  S  L  L  V  Q  Q  E  K  D  V  V  E  L  L  K  K  I  R  R  Y  N  H  I  Y  I  S  G  A  Y  G  I  F  L  :  K  V  L  A  L  P  L  L  T  R  R  V  L  R  A  L  M  D  T  L  M  D  P  D  Q  V  R  L  N  Y  Y  L  M  R  I  F  A  :  L  F  L  S  W  I  Y  W  G  C  E  F  Q  F  I  P  T   : G  G  L  G  I  W  R  L  F  D  I  C  A  I  A  T  V  A  I  F  Y  I  V  G  L  Y  H  R  W  V  L  R  R  R  V  R  Q  L  A  V  L  P  I  H  P  D  *  K  P  M  P  S  Y  P  E  V  F  A  V  N  I  S  Q  C  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29401" stop="29590"/>
                    <exon start="29711" stop="29907"/>
                    <exon start="31240" stop="31350"/>
                    <exon start="31867" stop="31918"/>
                    <exon start="32263" stop="32402"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTMRIMKNPNISSSIKDGDVKMEEEEGVKRRRESEKPPGDDCCPICFGDFSIPCKTNCGHWFCANCILQLWYYRSTLRRCKCPICSCLISKLVPEASLLVQQEKDVVELLKKIRRYNHIYISGAYGIFLKVLALPLLTRRVLRALMDTLMDPDQVRLNYYLMRIFALFLSWIYWGCEFQFIPTGGLGIWRLFDICAIATVAIFYIVGLYHRWVLRRRVRQLAVLPIHPD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30904" e_stop="31684"/>
            <exon e_start="31867" e_stop="31918"/>
            <exon e_start="32263" e_stop="32806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30904" e_stop="31684" e_length="781"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.886">
            <gDNA_intron_boundary i_start="31685" i_stop="31866" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31867" e_stop="31918" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.901" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31919" i_stop="32262" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="32263" e_stop="32806" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30904" stop="31575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31537" stop="31684"/>
              <exon start="31867" stop="31918"/>
              <exon start="32263" stop="32806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540366" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCATAAGAGAAAAAGAGAATGAATATTTGTTAAGAGACCTAGTTCTTATGGAAGTATAATTAGAAGAGCAAGTGTCATTAGTGATTTTAAAAATAAAAATTTTGTGTGGGGTGGGTGGGGAGGATACTTTCTTACAGCTTATTTGGTGCCTTTTGAGCCCTTTATTGCTACAGCTGTGCCTATACAACCTAATGGAATTAAGGAAGTTCCGCTCATAGAAAGAATTCATTGATGAAGTGAAGCAAATTGATTGATCTTATGATTCATTTTAAAACTTCAGAATATACGTTCCTGATATGTCTGATTTATATGTCTCTTTCTCCTTCCCACAGAAGGTACTAGCACTGCCGCTTTTAACTCGGAGAGTTCTCCGAGCACTGATGGACACTCTGATGGATCCTGATCAAGTTCGATTAAACTATTACTTGATGCGCATTTTCGCAGTAAGTTTTTTAAAGAGTAAATCGGGAATCTTCCAATAACTTCTGGATTCTTGTTTCAACATTATGTGGGTAATGATGCATAGTTATGTAAGTGCTGGAGGATCTAGAGAAGTGTCACATTTGAGTTGCCATGCGATCTCATTGCCTTTTCTTATGATTATGATTACTCAATAACCTTGCGTTGTGAGAGAAAATGATCCATATTCTTTGGATCTACTCTGTGCTGGGTGAAGCATGGATTCTCATGAAGTACCCTAGGACAATTTTGGTTAAATTTTTCTGTGAAGTTGTTAATGACATGGAAAATCCCTGGAATATCGCCTACACTGGTAAT : TTGTTCCTGAGTTGGATCTACTGGGGCTGCGAATTTCAGTTCATTCCTACTG : GAGGACTGGGAATCTGGAGGTTGTTTGACATCTGTGCTATTGCCACGGTAGCCATTTTCTATATAGTTGGTCTATACCATAGATGGGTGCTTCGTCGTCGTGTGAGACAGTTGGCTGTTCTACCAATACATCCTGATTGAAAGCCTATGCCTTCTTACCCGGAAGTCTTTGCTGTGAATATATCTCAATGTTTGTTGCCCAAAAAAAGAGATCCCCATGCAGAATATTTGTATGGGAGGTTATTTTAAACCATTTTCTTCTACTCATTTTGTTGGTAGCCAAGAGATTGTAATTCCTCCCCCAATGATAGGTCATATATGTTAGTCTTGAACTCTAATTAACAAAGTGCTTAGTGTGCTTTTGGTACATATTTGAACTTGGTAGGTCCTAGAGTATTTCACCAATTAGTTATCCAAGATTGTCAACGCTCGTAGTCTGAGTTAAATCTTCGAGACTTCAGAAGTCTACAGCATGATATGTGGTTACCTGCTCATTGAGATTTGGCACATTCATGGTTAAAGCATCAAGTTTTGGGCTATTCTTA</gDNA_template>
            <first_frame> *  F  I  R  E  K  E  N  E  Y  L  L  R  D  L  V  L  M  E  V  *  L  E  E  Q  V  S  L  V  I  L  K  I  K  I  L  C  G  V  G  G  E  D  T  F  L  Q  L  I  W  C  L  L  S  P  L  L  L  Q  L  C  L  Y  N  L  M  E  L  R  K  F  R  S  *  K  E  F  I  D  E  V  K  Q  I  D  *  S  Y  D  S  F  *  N  F  R  I  Y  V  P  D  M  S  D  L  Y  V  S  F  S  F  P  Q  K  V  L  A  L  P  L  L  T  R  R  V  L  R  A  L  M  D  T  L  M  D  P  D  Q  V  R  L  N  Y  Y  L  M  R  I  F  A  V  S  F  L  K  S  K  S  G  I  F  Q  *  L  L  D  S  C  F  N  I  M  W  V  M  M  H  S  Y  V  S  A  G  G  S  R  E  V  S  H  L  S  C  H  A  I  S  L  P  F  L  M  I  M  I  T  Q  *  P  C  V  V  R  E  N  D  P  Y  S  L  D  L  L  C  A  G  *  S  M  D  S  H  E  V  P  *  D  N  F  G  *  I  F  L  *  S  C  *  *  H  G  K  S  L  E  Y  R  L  H  W  *   : F  V  P  E  L  D  L  L  G  L  R  I  S  V  H  S  Y  W :   R  T  G  N  L  E  V  V  *  H  L  C  Y  C  H  G  S  H  F  L  Y  S  W  S  I  P  *  M  G  A  S  S  S  C  E  T  V  G  C  S  T  N  T  S  *  L  K  A  Y  A  F  L  P  G  S  L  C  C  E  Y  I  S  M  F  V  A  Q  K  K  R  S  P  C  R  I  F  V  W  E  V  I  L  N  H  F  L  L  L  I  L  L  V  A  K  R  L  *  F  L  P  Q  *  *  V  I  Y  V  S  L  E  L  *  L  T  K  C  L  V  C  F  W  Y  I  F  E  L  G  R  S  *  S  I  S  P  I  S  Y  P  R  L  S  T  L  V  V  *  V  K  S  S  R  L  Q  K  S  T  A  *  Y  V  V  T  C  S  L  R  F  G  T  F  M  V  K  A  S  S  F  G  L  F  L </first_frame>
            <second_frame>  N  S  *  E  K  K  R  M  N  I  C  *  E  T  *  F  L  W  K  Y  N  *  K  S  K  C  H  *  *  F  *  K  *  K  F  C  V  G  W  V  G  R  I  L  S  Y  S  L  F  G  A  F  *  A  L  Y  C  Y  S  C  A  Y  T  T  *  W  N  *  G  S  S  A  H  R  K  N  S  L  M  K  *  S  K  L  I  D  L  M  I  H  F  K  T  S  E  Y  T  F  L  I  C  L  I  Y  M  S  L  S  P  S  H  R  R  Y  *  H  C  R  F  *  L  G  E  F  S  E  H  *  W  T  L  *  W  I  L  I  K  F  D  *  T  I  T  *  C  A  F  S  Q  *  V  F  *  R  V  N  R  E  S  S  N  N  F  W  I  L  V  S  T  L  C  G  *  *  C  I  V  M  *  V  L  E  D  L  E  K  C  H  I  *  V  A  M  R  S  H  C  L  F  L  *  L  *  L  L  N  N  L  A  L  *  E  K  M  I  H  I  L  W  I  Y  S  V  L  G  E  A  W  I  L  M  K  Y  P  R  T  I  L  V  K  F  F  C  E  V  V  N  D  M  E  N  P  W  N  I  A  Y  T  G  N  :  L  F  L  S  W  I  Y  W  G  C  E  F  Q  F  I  P  T   : G  G  L  G  I  W  R  L  F  D  I  C  A  I  A  T  V  A  I  F  Y  I  V  G  L  Y  H  R  W  V  L  R  R  R  V  R  Q  L  A  V  L  P  I  H  P  D  *  K  P  M  P  S  Y  P  E  V  F  A  V  N  I  S  Q  C  L  L  P  K  K  R  D  P  H  A  E  Y  L  Y  G  R  L  F  *  T  I  F  F  Y  S  F  C  W  *  P  R  D  C  N  S  S  P  N  D  R  S  Y  M  L  V  L  N  S  N  *  Q  S  A  *  C  A  F  G  T  Y  L  N  L  V  G  P  R  V  F  H  Q  L  V  I  Q  D  C  Q  R  S  *  S  E  L  N  L  R  D  F  R  S  L  Q  H  D  M  W  L  P  A  H  *  D  L  A  H  S  W  L  K  H  Q  V  L  G  Y  S   </second_frame>
            <third_frame>   I  H  K  R  K  R  E  *  I  F  V  K  R  P  S  S  Y  G  S  I  I  R  R  A  S  V  I  S  D  F  K  N  K  N  F  V  W  G  G  W  G  G  Y  F  L  T  A  Y  L  V  P  F  E  P  F  I  A  T  A  V  P  I  Q  P  N  G  I  K  E  V  P  L  I  E  R  I  H  *  *  S  E  A  N  *  L  I  L  *  F  I  L  K  L  Q  N  I  R  S  *  Y  V  *  F  I  C  L  F  L  L  P  T  E  G  T  S  T  A  A  F  N  S  E  S  S  P  S  T  D  G  H  S  D  G  S  *  S  S  S  I  K  L  L  L  D  A  H  F  R  S  K  F  F  K  E  *  I  G  N  L  P  I  T  S  G  F  L  F  Q  H  Y  V  G  N  D  A  *  L  C  K  C  W  R  I  *  R  S  V  T  F  E  L  P  C  D  L  I  A  F  S  Y  D  Y  D  Y  S  I  T  L  R  C  E  R  K  *  S  I  F  F  G  S  T  L  C  W  V  K  H  G  F  S  *  S  T  L  G  Q  F  W  L  N  F  S  V  K  L  L  M  T  W  K  I  P  G  I  S  P  T  L  V  I :   C  S  *  V  G  S  T  G  A  A  N  F  S  S  F  L  L  :  E  D  W  E  S  G  G  C  L  T  S  V  L  L  P  R  *  P  F  S  I  *  L  V  Y  T  I  D  G  C  F  V  V  V  *  D  S  W  L  F  Y  Q  Y  I  L  I  E  S  L  C  L  L  T  R  K  S  L  L  *  I  Y  L  N  V  C  C  P  K  K  E  I  P  M  Q  N  I  C  M  G  G  Y  F  K  P  F  S  S  T  H  F  V  G  S  Q  E  I  V  I  P  P  P  M  I  G  H  I  C  *  S  *  T  L  I  N  K  V  L  S  V  L  L  V  H  I  *  T  W  *  V  L  E  Y  F  T  N  *  L  S  K  I  V  N  A  R  S  L  S  *  I  F  E  T  S  E  V  Y  S  M  I  C  G  Y  L  L  I  E  I  W  H  I  H  G  *  S  I  K  F  W  A  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31538" stop="31684"/>
                    <exon start="31867" stop="31918"/>
                    <exon start="32263" stop="32402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMIHILWIYSVLGEAWILMKYPRTILVKFFCEVVNDMENPWNIAYTGNLFLSWIYWGCEFQFIPTGGLGIWRLFDICAIATVAIFYIVGLYHRWVLRRRVRQLAVLPIHPD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31180" stop="31389"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRIYVPDMSDLYVSFSFPQKVLALPLLTRRVLRALMDTLMDPDQVRLNYYLMRIFAVSFLKSKSGIFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30930" stop="31139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVKRPSSYGSIIRRASVISDFKNKNFVWGGWGGYFLTAYLVPFEPFIATAVPIQPNGIKEVPLIERIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32805" PGL_stop="32285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32805" e_stop="32285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="32805" e_stop="32285" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32805" stop="32285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATAGCCCAAAACTTGATGCTTTAACCATGAATGTGCCAAATCTCAATGAGCAGGTAACCACATATCATGCTGTAGACTTCTGAAGTCTCGAAGATTTAACTCAGACTACGAGCGTTGACAATCTTGGATAACTAATTGGTGAAATACTCTAGGACCTACCAAGTTCAAATATGTACCAAAAGCACACTAAGCACTTTGTTAATTAGAGTTCAAGACTAACATATATGACCTATCATTGGGGGAGGAATTACAATCTCTTGGCTACCAACAAAATGAGTAGAAGAAAATGGTTTAAAATAACCTCCCATACAAATATTCTGCATGGGGATCTCTTTTTTTGGGCAACAAACATTGAGATATATTCACAGCAAAGACTTCCGGGTAAGAAGGCATAGGCTTTCAATCAGGATGTATTGGTAGAACAGCCAACTGTCTCACACGACGACGAAGCACCCATCTATGGTATAGACCAACTATATAGAAAATGGCTACCGTGGCAATAGCACAGATGTCAAAC</gDNA_template>
            <first_frame> K  N  S  P  K  L  D  A  L  T  M  N  V  P  N  L  N  E  Q  V  T  T  Y  H  A  V  D  F  *  S  L  E  D  L  T  Q  T  T  S  V  D  N  L  G  *  L  I  G  E  I  L  *  D  L  P  S  S  N  M  Y  Q  K  H  T  K  H  F  V  N  *  S  S  R  L  T  Y  M  T  Y  H  W  G  R  N  Y  N  L  L  A  T  N  K  M  S  R  R  K  W  F  K  I  T  S  H  T  N  I  L  H  G  D  L  F  F  W  A  T  N  I  E  I  Y  S  Q  Q  R  L  P  G  K  K  A  *  A  F  N  Q  D  V  L  V  E  Q  P  T  V  S  H  D  D  E  A  P  I  Y  G  I  D  Q  L  Y  R  K  W  L  P  W  Q  *  H  R  C  Q   </first_frame>
            <second_frame>  R  I  A  Q  N  L  M  L  *  P  *  M  C  Q  I  S  M  S  R  *  P  H  I  M  L  *  T  S  E  V  S  K  I  *  L  R  L  R  A  L  T  I  L  D  N  *  L  V  K  Y  S  R  T  Y  Q  V  Q  I  C  T  K  S  T  L  S  T  L  L  I  R  V  Q  D  *  H  I  *  P  I  I  G  G  G  I  T  I  S  W  L  P  T  K  *  V  E  E  N  G  L  K  *  P  P  I  Q  I  F  C  M  G  I  S  F  F  G  Q  Q  T  L  R  Y  I  H  S  K  D  F  R  V  R  R  H  R  L  S  I  R  M  Y  W  *  N  S  Q  L  S  H  T  T  T  K  H  P  S  M  V  *  T  N  Y  I  E  N  G  Y  R  G  N  S  T  D  V  K  </second_frame>
            <third_frame>   E  *  P  K  T  *  C  F  N  H  E  C  A  K  S  Q  *  A  G  N  H  I  S  C  C  R  L  L  K  S  R  R  F  N  S  D  Y  E  R  *  Q  S  W  I  T  N  W  *  N  T  L  G  P  T  K  F  K  Y  V  P  K  A  H  *  A  L  C  *  L  E  F  K  T  N  I  Y  D  L  S  L  G  E  E  L  Q  S  L  G  Y  Q  Q  N  E  *  K  K  M  V  *  N  N  L  P  Y  K  Y  S  A  W  G  S  L  F  L  G  N  K  H  *  D  I  F  T  A  K  T  S  G  *  E  G  I  G  F  Q  S  G  C  I  G  R  T  A  N  C  L  T  R  R  R  S  T  H  L  W  Y  R  P  T  I  *  K  M  A  T  V  A  I  A  Q  M  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0057J16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="33897" PGL_stop="37436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33923" e_stop="34344"/>
            <exon e_start="35225" e_stop="35421"/>
            <exon e_start="36138" e_stop="36236"/>
            <exon e_start="36886" e_stop="37436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.057" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33923" e_stop="34344" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35225" e_stop="35421" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.057" acc_prob="0.806">
            <gDNA_intron_boundary i_start="35422" i_stop="36137" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36138" e_stop="36236" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36237" i_stop="36885" i_length="649"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="36886" e_stop="37436" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33923" stop="34344"/>
              <exon start="35225" stop="35421"/>
              <exon start="36138" stop="36236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33923" stop="34344"/>
              <exon start="35225" stop="35394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33924" stop="34344"/>
              <exon start="35225" stop="35344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34091" stop="34344"/>
              <exon start="35225" stop="35421"/>
              <exon start="36138" stop="36236"/>
              <exon start="36886" stop="37127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36145" stop="36236"/>
              <exon start="36886" stop="37436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36886" stop="37318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG : GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTG : AAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT : GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTGCAGAGTTTGACATGGTCTTTCCCTATGATGCAGTTCTCTTACATTTACCTGCCAGTGTGTACAGATAGGATGTAGTGTTATGATGTATATACATACTCATTTAGTTGATCTCTCTTCCACCCCATCATATATTCTTGAATCTGAATGGAATATAGTCAATAGAAAACTACCGGCTTGTGTACTAATAATGAACTAATAATGAGTCTTATCACCCTACGTTGAACAAGACCTGTTCTACAGGCTCTTGCTATTATGTTCTGTCCTTGTTTAAGAGTTCCGTATATTTTACCAGCTTCTTTTTTCTTTATA</gDNA_template>
            <first_frame> T  K  S  S  S  K  P  *  P  Y  P  T  F  S  S  Y  A  F  *  L  S  F  R  F  R  *  R  T  T  G  G  N  R  F  F  L  L  R  C  R  D  E  F  G  R  G  R  G  G  R  R  Y  G  I  *  V  A  *  *  *  G  E  Y  D  V  V  F  R  N  G  D  R  G  *  A  G  R  *  S  *  T  D  S  R  G  *  G  P  S  G  V  G  W  C  I  F  *  E  P  C  G  C  *  D  R  E  C  V  F  E  D  G  E  A  S  Y  *  *  L  L  S  N  L  L  W  K  F  C  R  S  L  P  R  S  L  W  P  L  V  L  R :   R  L  Y  F  A  V  L  E  L  W  C  R  T  S  A  L  *  L  P  H  V  F  E  E  A  Y  *  F  D  T  R  G  I  I  V  *  S  A  G  C  R  S  N  *  G  F  E  K  S  S  K  V  *  S  P  F  Y  R  W  H  L  W  P  H  A   : E  G  A  W  V  A  L  L  H  K  E  S  V  Q  *  N  D  E  S  *  Q  A  W  C  S  F  E  Q  I  A  Y  F  C   : C  R  Q  N  V  I  D  V  F  D  Y  S  A  I  A  L  S  S  V  L  Y  L  V  G  L  Y  L  R  R  R  R  F  R  H  V  R  E  M  A  E  A  D  F  A  A  H  *  Q  L  P  T  G  E  A  D  I  C  Q  L  V  V  E  L  D  D  S  G  F  L  K  I  V  L  C  F  C  G  C  A  L  L  Q  S  L  T  W  S  F  P  M  M  Q  F  S  Y  I  Y  L  P  V  C  T  D  R  M  *  C  Y  D  V  Y  T  Y  S  F  S  *  S  L  F  H  P  I  I  Y  S  *  I  *  M  E  Y  S  Q  *  K  T  T  G  L  C  T  N  N  E  L  I  M  S  L  I  T  L  R  *  T  R  P  V  L  Q  A  L  A  I  M  F  C  P  C  L  R  V  P  Y  I  L  P  A  S  F  F  F  I </first_frame>
            <second_frame>  R  N  R  R  Q  N  P  N  P  I  P  P  S  P  A  M  L  S  D  L  A  S  D  S  G  D  G  R  Q  E  E  T  A  S  S  S  S  A  A  V  M  N  S  D  E  E  E  E  E  E  D  M  G  Y  K  S  P  D  D  E  V  S  T  T  L  F  S  G  T  E  I  E  D  E  L  E  G  N  R  E  P  T  A  E  D  E  D  L  R  E  L  D  G  A  S  S  K  S  L  V  V  V  E  T  E  N  A  F  L  R  T  E  K  P  P  T  D  D  C  C  P  I  C  F  G  N  F  V  V  P  C  R  G  P  C  G  H  W  Y  C   : G  G  C  I  L  Q  Y  W  N  Y  G  A  A  L  Q  P  C  N  C  P  M  C  S  R  K  L  T  D  L  T  P  E  A  S  L  Y  S  Q  Q  D  A  E  V  I  E  V  L  K  K  V  R  K  Y  N  R  L  F  I  G  G  T  Y  G  L  M  L  :  K  V  L  G  L  P  F  Y  I  K  R  V  F  N  E  M  M  N  P  D  R  P  G  A  H  L  N  K  L  R  I  F  A  :  A  V  K  M  *  L  M  Y  L  I  I  L  P  L  H  Y  P  Q  C  Y  I  W  L  G  C  I  F  D  E  G  V  F  A  M  S  G  R  W  L  R  L  I  L  L  L  I  D  S  C  Q  L  V  K  Q  T  F  V  N  S  L  W  S  L  T  I  L  D  F  *  R  S  S  S  A  F  V  V  V  R  F  C  R  V  *  H  G  L  S  L  *  C  S  S  L  T  F  T  C  Q  C  V  Q  I  G  C  S  V  M  M  Y  I  H  T  H  L  V  D  L  S  S  T  P  S  Y  I  L  E  S  E  W  N  I  V  N  R  K  L  P  A  C  V  L  I  M  N  *  *  *  V  L  S  P  Y  V  E  Q  D  L  F  Y  R  L  L  L  L  C  S  V  L  V  *  E  F  R  I  F  Y  Q  L  L  F  S  L   </second_frame>
            <third_frame>   E  I  V  V  K  T  L  T  L  S  H  L  L  Q  L  C  F  L  T  *  L  P  I  P  V  T  D  D  R  R  K  P  L  L  P  P  P  L  P  *  *  I  R  T  R  K  R  R  K  K  I  W  D  I  S  R  L  M  M  R  *  V  R  R  C  F  Q  E  R  R  *  R  M  S  W  K  V  I  V  N  R  Q  P  R  M  R  T  F  G  S  W  M  V  H  L  L  R  A  L  W  L  L  R  Q  R  M  R  F  *  G  R  R  S  L  L  L  M  I  V  V  Q  S  A  L  E  I  L  S  F  L  A  E  V  L  V  A  T  G  T  A  :  E  V  V  F  C  S  I  G  T  M  V  P  H  F  S  L  V  T  A  P  C  V  R  G  S  L  L  I  *  H  Q  R  H  H  C  I  V  S  R  M  Q  K  *  L  R  F  *  K  K  F  E  S  I  I  A  F  L  *  V  A  L  M  A  S  C  * :   R  C  L  G  C  P  F  T  *  R  E  C  S  M  K  *  *  I  L  T  G  L  V  L  I  *  T  N  C  V  F  L  L :   P  S  K  C  N  *  C  I  *  L  F  C  H  C  T  I  L  S  V  I  F  G  W  A  V  S  S  T  K  A  F  S  P  C  Q  G  D  G  *  G  *  F  C  C  S  L  T  A  A  N  W  *  S  R  H  L  S  T  R  C  G  A  *  R  F  W  I  S  K  D  R  P  L  L  L  W  L  C  A  F  A  E  F  D  M  V  F  P  Y  D  A  V  L  L  H  L  P  A  S  V  Y  R  *  D  V  V  L  *  C  I  Y  I  L  I  *  L  I  S  L  P  P  H  H  I  F  L  N  L  N  G  I  *  S  I  E  N  Y  R  L  V  Y  *  *  *  T  N  N  E  S  Y  H  P  T  L  N  K  T  C  S  T  G  S  C  Y  Y  V  L  S  L  F  K  S  S  V  Y  F  T  S  F  F  F  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33924" stop="34344"/>
                    <exon start="35225" stop="35421"/>
                    <exon start="36138" stop="36236"/>
                    <exon start="36886" stop="36900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRRQNPNPIPPSPAMLSDLASDSGDGRQEETASSSSAAVMNSDEEEEEEDMGYKSPDDEVSTTLFSGTEIEDELEGNREPTAEDEDLRELDGASSKSLVVVETENAFLRTEKPPTDDCCPICFGNFVVPCRGPCGHWYCGGCILQYWNYGAALQPCNCPMCSRKLTDLTPEASLYSQQDAEVIEVLKKVRKYNRLFIGGTYGLMLKVLGLPFYIKRVFNEMMNPDRPGAHLNKLRIFAAVKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33897" e_stop="34344"/>
            <exon e_start="35225" e_stop="35421"/>
            <exon e_start="36138" e_stop="36236"/>
            <exon e_start="36502" e_stop="36567"/>
            <exon e_start="36886" e_stop="37318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.057" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33897" e_stop="34344" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34345" i_stop="35224" i_length="880"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35225" e_stop="35421" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.057" acc_prob="0.806">
            <gDNA_intron_boundary i_start="35422" i_stop="36137" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36138" e_stop="36236" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.937">
            <gDNA_intron_boundary i_start="36237" i_stop="36501" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36502" e_stop="36567" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36568" i_stop="36885" i_length="318"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="36886" e_stop="37318" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33897" stop="34344"/>
              <exon start="35225" stop="35421"/>
              <exon start="36138" stop="36236"/>
              <exon start="36502" stop="36567"/>
              <exon start="36886" stop="36943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33898" stop="34344"/>
              <exon start="35225" stop="35421"/>
              <exon start="36138" stop="36236"/>
              <exon start="36502" stop="36567"/>
              <exon start="36886" stop="36934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33923" stop="34344"/>
              <exon start="35225" stop="35421"/>
              <exon start="36138" stop="36236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33923" stop="34344"/>
              <exon start="35225" stop="35394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33924" stop="34344"/>
              <exon start="35225" stop="35344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36886" stop="37318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTCTTCCTCCATAGTATTCCTTTACGAAATCGTCGTCAAAACCCTAACCCTATCCCACCTTCTCCAGCTATGCTTTCTGACTTAGCTTCCGATTCCGGTGACGGACGACAGGAGGAAACCGCTTCTTCCTCCTCCGCTGCCGTGATGAATTCGGACGAGGAAGAGGAGGAAGAAGATATGGGATATAAGTCGCCTGATGATGAGGTGAGTACGACGTTGTTTTCAGGAACGGAGATAGAGGATGAGCTGGAAGGTAATCGTGAACCGACAGCCGAGGATGAGGACCTTCGGGAGTTGGATGGTGCATCTTCTAAGAGCCTTGTGGTTGTTGAGACAGAGAATGCGTTTTTGAGGACGGAGAAGCCTCCTACTGATGATTGTTGTCCAATCTGCTTTGGAAATTTTGTCGTTCCTTGCCGAGGTCCTTGTGGCCACTGGTACTGCG : GAGGTTGTATTTTGCAGTATTGGAACTATGGTGCCGCACTTCAGCCTTGTAACTGCCCCATGTGTTCGAGGAAGCTTACTGATTTGACACCAGAGGCATCATTGTATAGTCAGCAGGATGCAGAAGTAATTGAGGTTTTGAAAAAAGTTCGAAAGTATAATCGCCTTTTTATAGGTGGCACTTATGGCCTCATGCTG : AAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCT : ATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAG : GCCGTCAAAATGTAATTGATGTATTTGATTATTCTGCCATTGCACTATCCTCAGTGTTATATTTGGTTGGGCTGTATCTTCGACGAAGGCGTTTTCGCCATGTCAGGGAGATGGCTGAGGCTGATTTTGCTGCTCATTGACAGCTGCCAACTGGTGAAGCAGACATTTGTCAACTCGTTGTGGAGCTTGACGATTCTGGATTTCTAAAGATCGTCCTCTGCTTTTGTGGTTGTGCGCTTTTGCAGAGTTTGACATGGTCTTTCCCTATGATGCAGTTCTCTTACATTTACCTGCCAGTGTGTACAGATAGGATGTAGTGTTATGATGTATATACATACTCATTTAGTTGATCTCTCTTCCACCCCATCATATATTCTTGAATCTGAATGGAATATAGTCAATAGAAAACTACCGGCTTGTGTACTAATAATGA</gDNA_template>
            <first_frame> K  F  F  L  H  S  I  P  L  R  N  R  R  Q  N  P  N  P  I  P  P  S  P  A  M  L  S  D  L  A  S  D  S  G  D  G  R  Q  E  E  T  A  S  S  S  S  A  A  V  M  N  S  D  E  E  E  E  E  E  D  M  G  Y  K  S  P  D  D  E  V  S  T  T  L  F  S  G  T  E  I  E  D  E  L  E  G  N  R  E  P  T  A  E  D  E  D  L  R  E  L  D  G  A  S  S  K  S  L  V  V  V  E  T  E  N  A  F  L  R  T  E  K  P  P  T  D  D  C  C  P  I  C  F  G  N  F  V  V  P  C  R  G  P  C  G  H  W  Y  C   : G  G  C  I  L  Q  Y  W  N  Y  G  A  A  L  Q  P  C  N  C  P  M  C  S  R  K  L  T  D  L  T  P  E  A  S  L  Y  S  Q  Q  D  A  E  V  I  E  V  L  K  K  V  R  K  Y  N  R  L  F  I  G  G  T  Y  G  L  M  L  :  K  V  L  G  L  P  F  Y  I  K  R  V  F  N  E  M  M  N  P  D  R  P  G  A  H  L  N  K  L  R  I  F  A  :  I  I  S  C  R  C  S  W  D  S  F  T  H  S  A  P  L  I  F  S  E  *  :  A  V  K  M  *  L  M  Y  L  I  I  L  P  L  H  Y  P  Q  C  Y  I  W  L  G  C  I  F  D  E  G  V  F  A  M  S  G  R  W  L  R  L  I  L  L  L  I  D  S  C  Q  L  V  K  Q  T  F  V  N  S  L  W  S  L  T  I  L  D  F  *  R  S  S  S  A  F  V  V  V  R  F  C  R  V  *  H  G  L  S  L  *  C  S  S  L  T  F  T  C  Q  C  V  Q  I  G  C  S  V  M  M  Y  I  H  T  H  L  V  D  L  S  S  T  P  S  Y  I  L  E  S  E  W  N  I  V  N  R  K  L  P  A  C  V  L  I  M  </first_frame>
            <second_frame>  S  S  S  S  I  V  F  L  Y  E  I  V  V  K  T  L  T  L  S  H  L  L  Q  L  C  F  L  T  *  L  P  I  P  V  T  D  D  R  R  K  P  L  L  P  P  P  L  P  *  *  I  R  T  R  K  R  R  K  K  I  W  D  I  S  R  L  M  M  R  *  V  R  R  C  F  Q  E  R  R  *  R  M  S  W  K  V  I  V  N  R  Q  P  R  M  R  T  F  G  S  W  M  V  H  L  L  R  A  L  W  L  L  R  Q  R  M  R  F  *  G  R  R  S  L  L  L  M  I  V  V  Q  S  A  L  E  I  L  S  F  L  A  E  V  L  V  A  T  G  T  A  :  E  V  V  F  C  S  I  G  T  M  V  P  H  F  S  L  V  T  A  P  C  V  R  G  S  L  L  I  *  H  Q  R  H  H  C  I  V  S  R  M  Q  K  *  L  R  F  *  K  K  F  E  S  I  I  A  F  L  *  V  A  L  M  A  S  C  * :   R  C  L  G  C  P  F  T  *  R  E  C  S  M  K  *  *  I  L  T  G  L  V  L  I  *  T  N  C  V  F  L  L :   *  F  L  A  D  V  P  G  T  P  L  H  I  Q  P  L  *  F  S  Q  N  R :   P  S  K  C  N  *  C  I  *  L  F  C  H  C  T  I  L  S  V  I  F  G  W  A  V  S  S  T  K  A  F  S  P  C  Q  G  D  G  *  G  *  F  C  C  S  L  T  A  A  N  W  *  S  R  H  L  S  T  R  C  G  A  *  R  F  W  I  S  K  D  R  P  L  L  L  W  L  C  A  F  A  E  F  D  M  V  F  P  Y  D  A  V  L  L  H  L  P  A  S  V  Y  R  *  D  V  V  L  *  C  I  Y  I  L  I  *  L  I  S  L  P  P  H  H  I  F  L  N  L  N  G  I  *  S  I  E  N  Y  R  L  V  Y  *  *  * </second_frame>
            <third_frame>   V  L  P  P  *  Y  S  F  T  K  S  S  S  K  P  *  P  Y  P  T  F  S  S  Y  A  F  *  L  S  F  R  F  R  *  R  T  T  G  G  N  R  F  F  L  L  R  C  R  D  E  F  G  R  G  R  G  G  R  R  Y  G  I  *  V  A  *  *  *  G  E  Y  D  V  V  F  R  N  G  D  R  G  *  A  G  R  *  S  *  T  D  S  R  G  *  G  P  S  G  V  G  W  C  I  F  *  E  P  C  G  C  *  D  R  E  C  V  F  E  D  G  E  A  S  Y  *  *  L  L  S  N  L  L  W  K  F  C  R  S  L  P  R  S  L  W  P  L  V  L  R :   R  L  Y  F  A  V  L  E  L  W  C  R  T  S  A  L  *  L  P  H  V  F  E  E  A  Y  *  F  D  T  R  G  I  I  V  *  S  A  G  C  R  S  N  *  G  F  E  K  S  S  K  V  *  S  P  F  Y  R  W  H  L  W  P  H  A   : E  G  A  W  V  A  L  L  H  K  E  S  V  Q  *  N  D  E  S  *  Q  A  W  C  S  F  E  Q  I  A  Y  F  C   : Y  N  F  L  Q  M  F  L  G  L  L  Y  T  F  S  P  F  D  F  L  R  I   : G  R  Q  N  V  I  D  V  F  D  Y  S  A  I  A  L  S  S  V  L  Y  L  V  G  L  Y  L  R  R  R  R  F  R  H  V  R  E  M  A  E  A  D  F  A  A  H  *  Q  L  P  T  G  E  A  D  I  C  Q  L  V  V  E  L  D  D  S  G  F  L  K  I  V  L  C  F  C  G  C  A  L  L  Q  S  L  T  W  S  F  P  M  M  Q  F  S  Y  I  Y  L  P  V  C  T  D  R  M  *  C  Y  D  V  Y  T  Y  S  F  S  *  S  L  F  H  P  I  I  Y  S  *  I  *  M  E  Y  S  Q  *  K  T  T  G  L  C  T  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33897" stop="34344"/>
                    <exon start="35225" stop="35421"/>
                    <exon start="36138" stop="36236"/>
                    <exon start="36502" stop="36567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFLHSIPLRNRRQNPNPIPPSPAMLSDLASDSGDGRQEETASSSSAAVMNSDEEEEEEDMGYKSPDDEVSTTLFSGTEIEDELEGNREPTAEDEDLRELDGASSKSLVVVETENAFLRTEKPPTDDCCPICFGNFVVPCRGPCGHWYCGGCILQYWNYGAALQPCNCPMCSRKLTDLTPEASLYSQQDAEVIEVLKKVRKYNRLFIGGTYGLMLKVLGLPFYIKRVFNEMMNPDRPGAHLNKLRIFAIISCRCSWDSFTHSAPLIFSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="35913" e_stop="36759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="35913" e_stop="36759" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35913" stop="36759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAAGTTAGTTGCACCTAATTTTTACATCAACCTAATAAATACATGTAATACATAACGTGTGTCTTTCTTTGAATTGTTCTCTCTTGTGAATAATAGCAGTGTAATATTTTCAGTGGTATCTAATCCTTCACATTTTGCAGACACAATAACTGGTTTACCATTAAGTATAAGCAGAGCACCACATTATTTTTATTTTAGCCCTTCTCTTTCTATTTTCTGCAGAAGGTGCTTGGGTTGCCCTTTTACATAAAGAGAGTGTTCAATGAAATGATGAATCCTGACAGGCCTGGTGCTCATTTGAACAAATTGCGTATTTTTGCTGTAAGTTCGTCTGACAGCTTAATGCAATGACTGCAACATTGCTACTTTAATCAGCTATCTGTAGTATTTGGTTTTATAGCTCTACAACCTCGATATTCTCCCTCAATTAGTTCCAAAGTGAAAAACAAATTCTCATTATTTATCAGTTTTCTGGCCTTAAATTGTTGTTAAGGTTTCTTTCTGATTTGCTATCTTATCTAATTTGCCATTCTATTCTTTGTTATATTTTAGTAACATCATTTCTTGAACTTATCCGCTGAAGCAGATAATTTCTTGCAGATGTTCCTGGGACTCCTTTACACATTCAGCCCCTTTGATTTTCTCAGAATAGGTACACACATCTGCTAGTTGAACTTGATGGGTGTAGAATTTGAAGAAAAATAATTGGCCAATTTTTCTTGTAGTATTGGTCTATTAAAACAAGTATATGAACTATGAACCTCTATGTTGCATTACAGGGACTTAAATAGTAACTGAGAAAATTCATTTTTTGTCTGTCTTCACTATTAGACCTCTATTTATT</gDNA_template>
            <first_frame> *  K  V  S  C  T  *  F  L  H  Q  P  N  K  Y  M  *  Y  I  T  C  V  F  L  *  I  V  L  S  C  E  *  *  Q  C  N  I  F  S  G  I  *  S  F  T  F  C  R  H  N  N  W  F  T  I  K  Y  K  Q  S  T  T  L  F  L  F  *  P  F  S  F  Y  F  L  Q  K  V  L  G  L  P  F  Y  I  K  R  V  F  N  E  M  M  N  P  D  R  P  G  A  H  L  N  K  L  R  I  F  A  V  S  S  S  D  S  L  M  Q  *  L  Q  H  C  Y  F  N  Q  L  S  V  V  F  G  F  I  A  L  Q  P  R  Y  S  P  S  I  S  S  K  V  K  N  K  F  S  L  F  I  S  F  L  A  L  N  C  C  *  G  F  F  L  I  C  Y  L  I  *  F  A  I  L  F  F  V  I  F  *  *  H  H  F  L  N  L  S  A  E  A  D  N  F  L  Q  M  F  L  G  L  L  Y  T  F  S  P  F  D  F  L  R  I  G  T  H  I  C  *  L  N  L  M  G  V  E  F  E  E  K  *  L  A  N  F  S  C  S  I  G  L  L  K  Q  V  Y  E  L  *  T  S  M  L  H  Y  R  D  L  N  S  N  *  E  N  S  F  F  V  C  L  H  Y  *  T  S  I  Y  </first_frame>
            <second_frame>  K  K  L  V  A  P  N  F  Y  I  N  L  I  N  T  C  N  T  *  R  V  S  F  F  E  L  F  S  L  V  N  N  S  S  V  I  F  S  V  V  S  N  P  S  H  F  A  D  T  I  T  G  L  P  L  S  I  S  R  A  P  H  Y  F  Y  F  S  P  S  L  S  I  F  C  R  R  C  L  G  C  P  F  T  *  R  E  C  S  M  K  *  *  I  L  T  G  L  V  L  I  *  T  N  C  V  F  L  L  *  V  R  L  T  A  *  C  N  D  C  N  I  A  T  L  I  S  Y  L  *  Y  L  V  L  *  L  Y  N  L  D  I  L  P  Q  L  V  P  K  *  K  T  N  S  H  Y  L  S  V  F  W  P  *  I  V  V  K  V  S  F  *  F  A  I  L  S  N  L  P  F  Y  S  L  L  Y  F  S  N  I  I  S  *  T  Y  P  L  K  Q  I  I  S  C  R  C  S  W  D  S  F  T  H  S  A  P  L  I  F  S  E  *  V  H  T  S  A  S  *  T  *  W  V  *  N  L  K  K  N  N  W  P  I  F  L  V  V  L  V  Y  *  N  K  Y  M  N  Y  E  P  L  C  C  I  T  G  T  *  I  V  T  E  K  I  H  F  L  S  V  F  T  I  R  P  L  F  I </second_frame>
            <third_frame>   K  S  *  L  H  L  I  F  T  S  T  *  *  I  H  V  I  H  N  V  C  L  S  L  N  C  S  L  L  *  I  I  A  V  *  Y  F  Q  W  Y  L  I  L  H  I  L  Q  T  Q  *  L  V  Y  H  *  V  *  A  E  H  H  I  I  F  I  L  A  L  L  F  L  F  S  A  E  G  A  W  V  A  L  L  H  K  E  S  V  Q  *  N  D  E  S  *  Q  A  W  C  S  F  E  Q  I  A  Y  F  C  C  K  F  V  *  Q  L  N  A  M  T  A  T  L  L  L  *  S  A  I  C  S  I  W  F  Y  S  S  T  T  S  I  F  S  L  N  *  F  Q  S  E  K  Q  I  L  I  I  Y  Q  F  S  G  L  K  L  L  L  R  F  L  S  D  L  L  S  Y  L  I  C  H  S  I  L  C  Y  I  L  V  T  S  F  L  E  L  I  R  *  S  R  *  F  L  A  D  V  P  G  T  P  L  H  I  Q  P  L  *  F  S  Q  N  R  Y  T  H  L  L  V  E  L  D  G  C  R  I  *  R  K  I  I  G  Q  F  F  L  *  Y  W  S  I  K  T  S  I  *  T  M  N  L  Y  V  A  L  Q  G  L  K  *  *  L  R  K  F  I  F  C  L  S  S  L  L  D  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35971" stop="36165"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSFFELFSLVNNSSVIFSVVSNPSHFADTITGLPLSISRAPHYFYFSPSLSIFCRRCLGCPFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41221" PGL_stop="37922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41221" e_stop="41082"/>
            <exon e_start="40934" e_stop="40482"/>
            <exon e_start="40378" e_stop="40190"/>
            <exon e_start="40092" e_stop="39871"/>
            <exon e_start="39330" e_stop="39009"/>
            <exon e_start="38900" e_stop="38711"/>
            <exon e_start="38571" e_stop="37922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.440" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="41221" e_stop="41082" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="41081" i_stop="40935" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40934" e_stop="40482" e_length="453"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.440">
            <gDNA_intron_boundary i_start="40481" i_stop="40379" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40378" e_stop="40190" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.947">
            <gDNA_intron_boundary i_start="40189" i_stop="40093" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40092" e_stop="39871" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39870" i_stop="39331" i_length="540"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39330" e_stop="39009" e_length="322"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.908">
            <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38900" e_stop="38711" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38571" e_stop="37922" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41221" stop="41082"/>
              <exon start="40934" stop="40482"/>
              <exon start="40378" stop="40190"/>
              <exon start="40092" stop="39984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40604" stop="40482"/>
              <exon start="40378" stop="40190"/>
              <exon start="40092" stop="39881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40564" stop="40482"/>
              <exon start="40378" stop="40190"/>
              <exon start="40092" stop="39871"/>
              <exon start="39330" stop="39011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40050" stop="39871"/>
              <exon start="39330" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40037" stop="39871"/>
              <exon start="39330" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39330" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39292" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39231" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38711"/>
              <exon start="38571" stop="38185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38711"/>
              <exon start="38571" stop="38503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38833" stop="38711"/>
              <exon start="38571" stop="38053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="37947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38475" stop="37922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245000" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38448" stop="37971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAGATGCCCAGTCTTTAGAGGAGGATTTGGTTAGAGCTGCTTGCCAGCTTGAACTCTCCATGATTCAAATATGTCGGATCACTGCTGAAGGAGATGGTGGTGCTCTTACTCACGATCTGAAGGCTATCCAGAAACAG : GTGAATGAAGATCAGAGACTTTTAAGAGAGAAAGTGCTTAATATTAGTGGAGGTGCTGGTATTGAACGGATGGATAATGCAATTTCTGACACACGAAACAAATACTTTGAAGCTAAAGAAAATGGGAGTCCTGTGGGCTCTCCAATTATGCAGTCGGTAGCTCCAAGCCCAATTGCTCTGACAAGCGCCTCTTCTTCTGTTGGGGGTTCAAATAAAGGAGGGAATTTGCTTGAGGTGAGTGATCAGAAGCCAAATCGTGTGGTGCGCTCCTTATTTAGGGATGAACTACCTTTAAAAGTTGGTTCTTCTGCCAATAAAAGCTTGCAGTCATCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAG : GACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAG : TTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAG : CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG : AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG : CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</gDNA_template>
            <first_frame> L  K  M  P  S  L  *  R  R  I  W  L  E  L  L  A  S  L  N  S  P  *  F  K  Y  V  G  S  L  L  K  E  M  V  V  L  L  L  T  I  *  R  L  S  R  N  R :   *  M  K  I  R  D  F  *  E  R  K  C  L  I  L  V  E  V  L  V  L  N  G  W  I  M  Q  F  L  T  H  E  T  N  T  L  K  L  K  K  M  G  V  L  W  A  L  Q  L  C  S  R  *  L  Q  A  Q  L  L  *  Q  A  P  L  L  L  L  G  V  Q  I  K  E  G  I  C  L  R  *  V  I  R  S  Q  I  V  W  C  A  P  Y  L  G  M  N  Y  L  *  K  L  V  L  L  P  I  K  A  C  S  H  P  I  L  M  R  D  W  *  W  R  M  N  *  L  *  T  S  H  F  M  V  S  I  L  N  L  L  S  L  Q  K  L  L  I  N  T  I  I  V  L  R :   T  K  L  E  K  R  W  R  R  L  S  G  I  V  S  W  N  P  *  K  R  M  K  I  D  T  I  E  L  L  I  *  *  E  K  Q  E  M  N  F  V  V  W  L  L  R  V  G  D  K  R  L  V  K  L  *  I  *  T  S  S  L  S :   C  *  S  Q  A  K  S  T  W  I  I  F  K  R  S  W  I  S  H  W  S  L  C  R  N  Y  P  L  Q  L  R  R  M  S  *  K  Q  I  V  R  S  Y  L  E  N  *  L  I  Y  V  W  M  G  Q  R  I  H  L  S  W  H  *  L  G  V  C  V  L  Y  W  K  R  C  S :   C  *  N  K  K  *  A  R  Q  G  L  E  C  W  N  Q  F  S  R  D  L  E  L  *  I  I  *  G  K  L  S  P  S  V  M  V  F  L  L  W  L  *  P  P  Y  P  *  H  G  N  G  F  Y  L  S  Q  I  P  W  T  R  N  L  M  N  T  R  R  L  Y  P  A  *  Q  V  D  K  I  V  S  F  L  L  P  P  L  E  L  E  D  A  F  Q  L  K  *  I  K  I  M  L  H  L  *  P  L  Q  :  K  L  *  M  N  A  K  N  A  R  G  T  K  L  I  Y  W  *  G  W  A  C  *  S  W  C  V  R  Y  L  V  L  R  K  K  G  C  L  K  L  C  S  *  I  F  L  D  *  G  L  L  R  Q  K  S  K  R  S  S  *  *  L  P   : A  F  *  S  K  D  R  F  F  R  V  C  K  Q  Y  Q  A  L  Q  I  W  I  K  L  F  K  E  A  P  K  L  F  L  S  S  L  T  P  T  M  M  L  V  F  K  R  S  S  R  H  L  S  N  L  W  S  M  A  T  M  V  L  M  R  *  S  F  S  R  S  R  R  S  W  Q  G  C  Y  P  R  A  C  K  L  G  M  L  F  L  C  M  *  P  G  Q  Y  I  W  L  E  G  E  L  Y  L  E  E  L  E  D  K  E  E  N  W  L  K  R  L  Y  G  R  W  E  *  L  F  *  L  T  R  L  W  M  P  P  L  Y  W  L  W  Q  H  M  *  R  *  M  F  M  V  L  G  M  H  S  *  *  I  I  C  E  A  F  *  H  S  F  V  N  I  R  A  C  S  Y  Y  S  V  L  S  S  C  E  T  Q  S  S  V  V  I  V  V  M  *  L  E  T  *  K  M  *  I  F  A  K  I  R  V  K  Y  K  R  L  L  V  Y </first_frame>
            <second_frame>  *  R  C  P  V  F  R  G  G  F  G  *  S  C  L  P  A  *  T  L  H  D  S  N  M  S  D  H  C  *  R  R  W  W  C  S  Y  S  R  S  E  G  Y  P  E  T   : G  E  *  R  S  E  T  F  K  R  E  S  A  *  Y  *  W  R  C  W  Y  *  T  D  G  *  C  N  F  *  H  T  K  Q  I  L  *  S  *  R  K  W  E  S  C  G  L  S  N  Y  A  V  G  S  S  K  P  N  C  S  D  K  R  L  F  F  C  W  G  F  K  *  R  R  E  F  A  *  G  E  *  S  E  A  K  S  C  G  A  L  L  I  *  G  *  T  T  F  K  S  W  F  F  C  Q  *  K  L  A  V  I  P  Y  *  *  G  I  G  N  G  E  *  T  N  C  E  R  V  T  S  W  S  A  S  *  I  C  *  V  F  K  S  C  *  *  T  R  *  *  Y  *   : G  Q  S  *  R  N  D  G  E  G  F  L  G  *  C  H  G  I  H  E  K  G  *  K  *  I  Q  S  S  C  *  S  N  E  R  S  K  R  *  T  L  *  F  G  S  S  E  L  E  T  K  D  *  *  S  Y  R  Y  R  H  P  L  S   : V  V  D  H  R  Q  N  R  H  G  L  S  S  K  D  H  G  F  H  I  G  H  F  A  E  T  I  L  S  S  *  G  G  *  A  K  S  K  L  S  E  V  I  W  R  T  S  *  Y  M  C  G  W  V  R  E  F  I  Y  P  G  T  S  *  G  F  A  F  C  T  G  R  D  A   : A  A  E  T  R  N  K  Q  G  K  D  *  N  V  G  T  N  S  Q  G  T  W  S  F  R  L  F  E  E  S  F  H  Q  A  L  W  S  S  F  Y  G  Y  D  R  L  T  L  D  M  A  M  A  F  I  C  L  R  F  H  G  P  G  I  *  *  T  Q  G  G  S  I  Q  P  D  K  W  T  R  S  F  P  S  F  C  H  P  *  N  W  R  M  L  F  S  *  N  E  *  K  S  C  F  T  F  D  L  Y  R :   S  C  R  *  M  P  R  M  H  G  G  Q  S  *  F  I  G  E  A  G  L  V  K  V  G  V  C  G  I  W  S  Y  A  R  R  V  A  *  N  S  A  A  E  F  F  *  T  K  G  Y  S  G  K  N  P  K  D  H  R  N  S  Y  Q  :  H  S  S  P  K  T  G  S  S  E  Y  A  S  S  I  K  R  C  R  Y  G  *  N  C  S  R  K  R  Q  S  S  F  *  A  P  *  L  Q  Q  *  C  W  Y  S  R  D  H  L  D  T  C  Q  T  F  G  A  W  R  Q  W  Y  *  *  D  E  A  S  A  D  Q  G  D  H  G  K  D  V  I  Q  E  P  A  S  W  G  C  Y  F  C  A  C  S  Q  G  N  I  F  G  W  K  G  S  C  T  W  R  N  W  K  T  R  K  R  I  G  *  S  G  S  T  A  G  G  S  S  C  S  N  *  R  D  C  G  C  H  L  C  I  G  Y  G  S  T  C  D  G  E  C  S  W  S  L  V  C  T  V  S  R  *  Y  V  K  L  F  N  I  L  L  *  I  S  G  H  V  V  I  I  L  Y  Y  L  A  V  K  L  S  R  V  L  L  L  *  *  C  D  W  K  P  R  K  C  R  Y  L  L  K  *  E  L  N  I  N  A  C  L  Y   </second_frame>
            <third_frame>   K  D  A  Q  S  L  E  E  D  L  V  R  A  A  C  Q  L  E  L  S  M  I  Q  I  C  R  I  T  A  E  G  D  G  G  A  L  T  H  D  L  K  A  I  Q  K  Q  :  V  N  E  D  Q  R  L  L  R  E  K  V  L  N  I  S  G  G  A  G  I  E  R  M  D  N  A  I  S  D  T  R  N  K  Y  F  E  A  K  E  N  G  S  P  V  G  S  P  I  M  Q  S  V  A  P  S  P  I  A  L  T  S  A  S  S  S  V  G  G  S  N  K  G  G  N  L  L  E  V  S  D  Q  K  P  N  R  V  V  R  S  L  F  R  D  E  L  P  L  K  V  G  S  S  A  N  K  S  L  Q  S  S  H  T  D  E  G  L  V  M  E  N  E  L  I  V  N  E  S  L  H  G  Q  H  L  E  F  A  E  S  S  K  V  A  D  K  H  D  N  S  I  K  :  D  K  V  R  E  T  M  E  K  A  F  W  D  S  V  M  E  S  M  K  K  D  E  N  R  Y  N  R  V  V  D  L  M  R  E  A  R  D  E  L  C  S  L  A  P  Q  S  W  R  Q  K  I  S  E  A  I  D  I  D  I  L  S  Q  :  L  L  I  T  G  K  I  D  M  D  Y  L  Q  K  I  M  D  F  T  L  V  T  L  Q  K  L  S  S  P  A  K  E  D  E  L  K  A  N  C  Q  K  L  F  G  E  L  A  D  I  C  V  D  G  S  E  N  S  F  I  L  A  L  V  R  G  L  R  F  V  L  E  E  M  Q  :  L  L  K  Q  E  I  S  K  A  R  I  R  M  L  E  P  I  L  K  G  P  G  A  L  D  Y  L  R  K  A  F  T  K  R  Y  G  L  P  S  M  A  M  T  A  L  P  L  T  W  Q  W  L  L  S  V  S  D  S  M  D  Q  E  F  N  E  H  K  E  A  L  S  S  L  T  S  G  Q  D  R  F  L  P  S  A  T  L  R  T  G  G  C  F  S  V  K  M  N  K  N  H  A  S  P  L  T  S  T   : E  A  V  D  E  C  Q  E  C  T  G  D  K  V  D  L  L  V  R  L  G  L  L  K  L  V  C  A  V  S  G  L  T  Q  E  G  L  P  E  T  L  Q  L  N  F  F  R  L  R  A  T  Q  A  K  I  Q  K  I  I  V  I  A  T  S :   I  L  V  Q  R  Q  V  L  Q  S  M  Q  A  V  S  S  A  A  D  M  D  K  I  V  Q  G  S  A  K  A  L  S  E  L  L  D  S  N  N  D  A  G  I  Q  E  I  I  S  T  L  V  K  P  L  E  H  G  D  N  G  T  D  E  M  K  L  Q  Q  I  K  E  I  M  A  R  M  L  S  K  S  L  Q  A  G  D  A  I  F  V  H  V  A  R  A  I  Y  L  A  G  R  G  V  V  L  G  G  T  G  R  Q  G  R  E  L  A  E  A  A  L  R  Q  V  G  V  A  V  L  I  D  E  I  V  D  A  T  S  V  L  V  M  A  A  H  V  T  V  N  V  H  G  P  W  Y  A  Q  L  V  D  N  M  *  S  F  L  T  F  F  C  K  Y  Q  G  M  *  L  L  F  C  I  I  *  L  *  N  S  V  E  C  C  Y  C  S  N  V  T  G  N  L  E  N  V  D  I  C  *  N  K  S  *  I  *  T  L  A  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41219" stop="41082"/>
                    <exon start="40934" stop="40482"/>
                    <exon start="40378" stop="40190"/>
                    <exon start="40092" stop="39871"/>
                    <exon start="39330" stop="39009"/>
                    <exon start="38900" stop="38711"/>
                    <exon start="38571" stop="38088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1995</number_coding_nucleotides>
                  <number_encoded_amino_acids>665</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDAQSLEEDLVRAACQLELSMIQICRITAEGDGGALTHDLKAIQKQVNEDQRLLREKVLNISGGAGIERMDNAISDTRNKYFEAKENGSPVGSPIMQSVAPSPIALTSASSSVGGSNKGGNLLEVSDQKPNRVVRSLFRDELPLKVGSSANKSLQSSHTDEGLVMENELIVNESLHGQHLEFAESSKVADKHDNSIKDKVRETMEKAFWDSVMESMKKDENRYNRVVDLMREARDELCSLAPQSWRQKISEAIDIDILSQLLITGKIDMDYLQKIMDFTLVTLQKLSSPAKEDELKANCQKLFGELADICVDGSENSFILALVRGLRFVLEEMQLLKQEISKARIRMLEPILKGPGALDYLRKAFTKRYGLPSMAMTALPLTWQWLLSVSDSMDQEFNEHKEALSSLTSGQDRFLPSATLRTGGCFSVKMNKNHASPLTSTEAVDECQECTGDKVDLLVRLGLLKLVCAVSGLTQEGLPETLQLNFFRLRATQAKIQKIIVIATSILVQRQVLQSMQAVSSAADMDKIVQGSAKALSELLDSNNDAGIQEIISTLVKPLEHGDNGTDEMKLQQIKEIMARMLSKSLQAGDAIFVHVARAIYLAGRGVVLGGTGRQGRELAEAALRQVGVAVLIDEIVDATSVLVMAAHVTVNVHGPWYAQLVDNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39602" e_stop="39009"/>
            <exon e_start="38900" e_stop="38711"/>
            <exon e_start="38571" e_stop="37922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39602" e_stop="39009" e_length="594"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.908">
            <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38900" e_stop="38711" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38571" e_stop="37922" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39602" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39379" stop="39009"/>
              <exon start="38900" stop="38764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39330" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39292" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39231" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="38322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38711"/>
              <exon start="38571" stop="38185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38711"/>
              <exon start="38571" stop="38503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38833" stop="38711"/>
              <exon start="38571" stop="38053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="37947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38475" stop="37922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245000" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38448" stop="37971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG : AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG : CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</gDNA_template>
            <first_frame> S  I  Y  E  V  *  I  G  T  Y  F  T  F  K  R  E  C  V  G  C  K  Y  I  L  F  *  Y  R  V  F  W  C  L  N  S  F  *  N  I  I  V  V  P  H  C  L  T  N  K  S  I  D  *  K  F  S  A  S  Y  I  F  E  D  C  C  A  S  N  P  A  I  S  V  F  F  V  T  P  V  *  G  V  *  Y  S  L  S  F  L  C  S  C  *  N  K  K  *  A  R  Q  G  L  E  C  W  N  Q  F  S  R  D  L  E  L  *  I  I  *  G  K  L  S  P  S  V  M  V  F  L  L  W  L  *  P  P  Y  P  *  H  G  N  G  F  Y  L  S  Q  I  P  W  T  R  N  L  M  N  T  R  R  L  Y  P  A  *  Q  V  D  K  I  V  S  F  L  L  P  P  L  E  L  E  D  A  F  Q  L  K  *  I  K  I  M  L  H  L  *  P  L  Q  :  K  L  *  M  N  A  K  N  A  R  G  T  K  L  I  Y  W  *  G  W  A  C  *  S  W  C  V  R  Y  L  V  L  R  K  K  G  C  L  K  L  C  S  *  I  F  L  D  *  G  L  L  R  Q  K  S  K  R  S  S  *  *  L  P   : A  F  *  S  K  D  R  F  F  R  V  C  K  Q  Y  Q  A  L  Q  I  W  I  K  L  F  K  E  A  P  K  L  F  L  S  S  L  T  P  T  M  M  L  V  F  K  R  S  S  R  H  L  S  N  L  W  S  M  A  T  M  V  L  M  R  *  S  F  S  R  S  R  R  S  W  Q  G  C  Y  P  R  A  C  K  L  G  M  L  F  L  C  M  *  P  G  Q  Y  I  W  L  E  G  E  L  Y  L  E  E  L  E  D  K  E  E  N  W  L  K  R  L  Y  G  R  W  E  *  L  F  *  L  T  R  L  W  M  P  P  L  Y  W  L  W  Q  H  M  *  R  *  M  F  M  V  L  G  M  H  S  *  *  I  I  C  E  A  F  *  H  S  F  V  N  I  R  A  C  S  Y  Y  S  V  L  S  S  C  E  T  Q  S  S  V  V  I  V  V  M  *  L  E  T  *  K  M  *  I  F  A  K  I  R  V  K  Y  K  R  L  L  V  Y </first_frame>
            <second_frame>  A  F  M  K  S  R  *  G  P  I  S  H  S  K  G  S  V  L  D  A  S  I  F  C  S  D  T  G  C  S  G  V  *  I  H  F  E  T  *  L  L  Y  H  I  A  *  Q  T  S  L  *  T  K  N  F  P  P  A  I  S  L  R  I  V  V  L  P  I  L  L  F  Q  Y  F  S  *  P  Q  Y  K  V  S  D  I  P  S  L  F  C  A  A  A  E  T  R  N  K  Q  G  K  D  *  N  V  G  T  N  S  Q  G  T  W  S  F  R  L  F  E  E  S  F  H  Q  A  L  W  S  S  F  Y  G  Y  D  R  L  T  L  D  M  A  M  A  F  I  C  L  R  F  H  G  P  G  I  *  *  T  Q  G  G  S  I  Q  P  D  K  W  T  R  S  F  P  S  F  C  H  P  *  N  W  R  M  L  F  S  *  N  E  *  K  S  C  F  T  F  D  L  Y  R :   S  C  R  *  M  P  R  M  H  G  G  Q  S  *  F  I  G  E  A  G  L  V  K  V  G  V  C  G  I  W  S  Y  A  R  R  V  A  *  N  S  A  A  E  F  F  *  T  K  G  Y  S  G  K  N  P  K  D  H  R  N  S  Y  Q  :  H  S  S  P  K  T  G  S  S  E  Y  A  S  S  I  K  R  C  R  Y  G  *  N  C  S  R  K  R  Q  S  S  F  *  A  P  *  L  Q  Q  *  C  W  Y  S  R  D  H  L  D  T  C  Q  T  F  G  A  W  R  Q  W  Y  *  *  D  E  A  S  A  D  Q  G  D  H  G  K  D  V  I  Q  E  P  A  S  W  G  C  Y  F  C  A  C  S  Q  G  N  I  F  G  W  K  G  S  C  T  W  R  N  W  K  T  R  K  R  I  G  *  S  G  S  T  A  G  G  S  S  C  S  N  *  R  D  C  G  C  H  L  C  I  G  Y  G  S  T  C  D  G  E  C  S  W  S  L  V  C  T  V  S  R  *  Y  V  K  L  F  N  I  L  L  *  I  S  G  H  V  V  I  I  L  Y  Y  L  A  V  K  L  S  R  V  L  L  L  *  *  C  D  W  K  P  R  K  C  R  Y  L  L  K  *  E  L  N  I  N  A  C  L  Y   </second_frame>
            <third_frame>   H  L  *  S  L  D  R  D  L  F  H  I  Q  K  G  V  C  W  M  Q  V  Y  S  V  L  I  Q  G  V  L  V  F  E  F  I  L  K  H  N  C  C  T  T  L  L  N  K  Q  V  Y  R  L  K  I  F  R  Q  L  Y  L  *  G  L  L  C  F  Q  S  C  Y  F  S  I  F  R  N  P  S  I  R  C  L  I  F  P  L  F  F  V  Q  L  L  K  Q  E  I  S  K  A  R  I  R  M  L  E  P  I  L  K  G  P  G  A  L  D  Y  L  R  K  A  F  T  K  R  Y  G  L  P  S  M  A  M  T  A  L  P  L  T  W  Q  W  L  L  S  V  S  D  S  M  D  Q  E  F  N  E  H  K  E  A  L  S  S  L  T  S  G  Q  D  R  F  L  P  S  A  T  L  R  T  G  G  C  F  S  V  K  M  N  K  N  H  A  S  P  L  T  S  T   : E  A  V  D  E  C  Q  E  C  T  G  D  K  V  D  L  L  V  R  L  G  L  L  K  L  V  C  A  V  S  G  L  T  Q  E  G  L  P  E  T  L  Q  L  N  F  F  R  L  R  A  T  Q  A  K  I  Q  K  I  I  V  I  A  T  S :   I  L  V  Q  R  Q  V  L  Q  S  M  Q  A  V  S  S  A  A  D  M  D  K  I  V  Q  G  S  A  K  A  L  S  E  L  L  D  S  N  N  D  A  G  I  Q  E  I  I  S  T  L  V  K  P  L  E  H  G  D  N  G  T  D  E  M  K  L  Q  Q  I  K  E  I  M  A  R  M  L  S  K  S  L  Q  A  G  D  A  I  F  V  H  V  A  R  A  I  Y  L  A  G  R  G  V  V  L  G  G  T  G  R  Q  G  R  E  L  A  E  A  A  L  R  Q  V  G  V  A  V  L  I  D  E  I  V  D  A  T  S  V  L  V  M  A  A  H  V  T  V  N  V  H  G  P  W  Y  A  Q  L  V  D  N  M  *  S  F  L  T  F  F  C  K  Y  Q  G  M  *  L  L  F  C  I  I  *  L  *  N  S  V  E  C  C  Y  C  S  N  V  T  G  N  L  E  N  V  D  I  C  *  N  K  S  *  I  *  T  L  A  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39417" stop="39009"/>
                    <exon start="38900" stop="38711"/>
                    <exon start="38571" stop="38088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLCFQSCYFSIFRNPSIRCLIFPLFFVQLLKQEISKARIRMLEPILKGPGALDYLRKAFTKRYGLPSMAMTALPLTWQWLLSVSDSMDQEFNEHKEALSSLTSGQDRFLPSATLRTGGCFSVKMNKNHASPLTSTEAVDECQECTGDKVDLLVRLGLLKLVCAVSGLTQEGLPETLQLNFFRLRATQAKIQKIIVIATSILVQRQVLQSMQAVSSAADMDKIVQGSAKALSELLDSNNDAGIQEIISTLVKPLEHGDNGTDEMKLQQIKEIMARMLSKSLQAGDAIFVHVARAIYLAGRGVVLGGTGRQGRELAEAALRQVGVAVLIDEIVDATSVLVMAAHVTVNVHGPWYAQLVDNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38902" e_stop="38711"/>
            <exon e_start="38571" e_stop="37922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38902" e_stop="38711" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38571" e_stop="37922" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38902" stop="38711"/>
              <exon start="38571" stop="38053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322237" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38711"/>
              <exon start="38571" stop="38185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38890" stop="38711"/>
              <exon start="38571" stop="38503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38833" stop="38711"/>
              <exon start="38571" stop="38053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="37947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38475" stop="37922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245000" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38448" stop="37971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG : CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</gDNA_template>
            <first_frame> R  S  C  R  *  M  P  R  M  H  G  G  Q  S  *  F  I  G  E  A  G  L  V  K  V  G  V  C  G  I  W  S  Y  A  R  R  V  A  *  N  S  A  A  E  F  F  *  T  K  G  Y  S  G  K  N  P  K  D  H  R  N  S  Y  Q  :  H  S  S  P  K  T  G  S  S  E  Y  A  S  S  I  K  R  C  R  Y  G  *  N  C  S  R  K  R  Q  S  S  F  *  A  P  *  L  Q  Q  *  C  W  Y  S  R  D  H  L  D  T  C  Q  T  F  G  A  W  R  Q  W  Y  *  *  D  E  A  S  A  D  Q  G  D  H  G  K  D  V  I  Q  E  P  A  S  W  G  C  Y  F  C  A  C  S  Q  G  N  I  F  G  W  K  G  S  C  T  W  R  N  W  K  T  R  K  R  I  G  *  S  G  S  T  A  G  G  S  S  C  S  N  *  R  D  C  G  C  H  L  C  I  G  Y  G  S  T  C  D  G  E  C  S  W  S  L  V  C  T  V  S  R  *  Y  V  K  L  F  N  I  L  L  *  I  S  G  H  V  V  I  I  L  Y  Y  L  A  V  K  L  S  R  V  L  L  L  *  *  C  D  W  K  P  R  K  C  R  Y  L  L  K  *  E  L  N  I  N  A  C  L  Y   </first_frame>
            <second_frame>  E  A  V  D  E  C  Q  E  C  T  G  D  K  V  D  L  L  V  R  L  G  L  L  K  L  V  C  A  V  S  G  L  T  Q  E  G  L  P  E  T  L  Q  L  N  F  F  R  L  R  A  T  Q  A  K  I  Q  K  I  I  V  I  A  T  S :   I  L  V  Q  R  Q  V  L  Q  S  M  Q  A  V  S  S  A  A  D  M  D  K  I  V  Q  G  S  A  K  A  L  S  E  L  L  D  S  N  N  D  A  G  I  Q  E  I  I  S  T  L  V  K  P  L  E  H  G  D  N  G  T  D  E  M  K  L  Q  Q  I  K  E  I  M  A  R  M  L  S  K  S  L  Q  A  G  D  A  I  F  V  H  V  A  R  A  I  Y  L  A  G  R  G  V  V  L  G  G  T  G  R  Q  G  R  E  L  A  E  A  A  L  R  Q  V  G  V  A  V  L  I  D  E  I  V  D  A  T  S  V  L  V  M  A  A  H  V  T  V  N  V  H  G  P  W  Y  A  Q  L  V  D  N  M  *  S  F  L  T  F  F  C  K  Y  Q  G  M  *  L  L  F  C  I  I  *  L  *  N  S  V  E  C  C  Y  C  S  N  V  T  G  N  L  E  N  V  D  I  C  *  N  K  S  *  I  *  T  L  A  C  I  </second_frame>
            <third_frame>   K  L  *  M  N  A  K  N  A  R  G  T  K  L  I  Y  W  *  G  W  A  C  *  S  W  C  V  R  Y  L  V  L  R  K  K  G  C  L  K  L  C  S  *  I  F  L  D  *  G  L  L  R  Q  K  S  K  R  S  S  *  *  L  P   : A  F  *  S  K  D  R  F  F  R  V  C  K  Q  Y  Q  A  L  Q  I  W  I  K  L  F  K  E  A  P  K  L  F  L  S  S  L  T  P  T  M  M  L  V  F  K  R  S  S  R  H  L  S  N  L  W  S  M  A  T  M  V  L  M  R  *  S  F  S  R  S  R  R  S  W  Q  G  C  Y  P  R  A  C  K  L  G  M  L  F  L  C  M  *  P  G  Q  Y  I  W  L  E  G  E  L  Y  L  E  E  L  E  D  K  E  E  N  W  L  K  R  L  Y  G  R  W  E  *  L  F  *  L  T  R  L  W  M  P  P  L  Y  W  L  W  Q  H  M  *  R  *  M  F  M  V  L  G  M  H  S  *  *  I  I  C  E  A  F  *  H  S  F  V  N  I  R  A  C  S  Y  Y  S  V  L  S  S  C  E  T  Q  S  S  V  V  I  V  V  M  *  L  E  T  *  K  M  *  I  F  A  K  I  R  V  K  Y  K  R  L  L  V  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38901" stop="38711"/>
                    <exon start="38571" stop="38088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAVDECQECTGDKVDLLVRLGLLKLVCAVSGLTQEGLPETLQLNFFRLRATQAKIQKIIVIATSILVQRQVLQSMQAVSSAADMDKIVQGSAKALSELLDSNNDAGIQEIISTLVKPLEHGDNGTDEMKLQQIKEIMARMLSKSLQAGDAIFVHVARAIYLAGRGVVLGGTGRQGRELAEAALRQVGVAVLIDEIVDATSVLVMAAHVTVNVHGPWYAQLVDNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42229" PGL_stop="41466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42229" e_stop="42211"/>
            <exon e_start="42109" e_stop="41994"/>
            <exon e_start="41865" e_stop="41466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.983"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42229" e_stop="42211" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.787">
            <gDNA_intron_boundary i_start="42210" i_stop="42110" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="42109" e_stop="41994" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41993" i_stop="41866" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="41865" e_stop="41466" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42229" stop="42211"/>
              <exon start="42109" stop="41994"/>
              <exon start="41865" stop="41466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGACAAGCTGCAAAGG : GCAAAGAGACAAAGAGAAGAATATTTGATGCAGAGAGGAAAAGCACATAATTCCTTTTGTGACAGTTATGATGAGATACATGACCAGGCTGACCTGCTATCAAGGAAATTAGCAAG : GTGTTGGAAGCAGTTCCTTACACGTGGAAAGACAACCTTCCACCTTGCAAAAGCTTATACTATGCTGAGTATTAACGAGAATGCAGTTAAGGTAATGCCATTTGAGCAGCTAGCAATGAAGATTGAATCGCCTAATACACTACAGAGAACTAAAGGTTTGCTTGATCGGCTTGAGCTTCGCTTCAAATTGTTGCGTGATGTTGACAGTGTGACAAGTACCATTGGTTGGGGTAATATTGATCATCTTCTCAACCGAGTAGCTACACCCAAAAAGAAGGCTACACCAAGGAGATCTCTGCACAGTCGTGGTGCAAAAAAAATAGTATCGAACTTACCAGCAGTGACAACTCCAGTCAAGTTGTTGAGGTATCCAGTTCGAATCGTGCTGTGTGCATATATG</gDNA_template>
            <first_frame> R  R  Q  A  A  K   : G  K  E  T  K  R  R  I  F  D  A  E  R  K  S  T  *  F  L  L  *  Q  L  *  *  D  T  *  P  G  *  P  A  I  K  E  I  S  K  :  V  L  E  A  V  P  Y  T  W  K  D  N  L  P  P  C  K  S  L  Y  Y  A  E  Y  *  R  E  C  S  *  G  N  A  I  *  A  A  S  N  E  D  *  I  A  *  Y  T  T  E  N  *  R  F  A  *  S  A  *  A  S  L  Q  I  V  A  *  C  *  Q  C  D  K  Y  H  W  L  G  *  Y  *  S  S  S  Q  P  S  S  Y  T  Q  K  E  G  Y  T  K  E  I  S  A  Q  S  W  C  K  K  N  S  I  E  L  T  S  S  D  N  S  S  Q  V  V  E  V  S  S  S  N  R  A  V  C  I  Y  </first_frame>
            <second_frame>  E  D  K  L  Q  R  :  A  K  R  Q  R  E  E  Y  L  M  Q  R  G  K  A  H  N  S  F  C  D  S  Y  D  E  I  H  D  Q  A  D  L  L  S  R  K  L  A  R :   C  W  K  Q  F  L  T  R  G  K  T  T  F  H  L  A  K  A  Y  T  M  L  S  I  N  E  N  A  V  K  V  M  P  F  E  Q  L  A  M  K  I  E  S  P  N  T  L  Q  R  T  K  G  L  L  D  R  L  E  L  R  F  K  L  L  R  D  V  D  S  V  T  S  T  I  G  W  G  N  I  D  H  L  L  N  R  V  A  T  P  K  K  K  A  T  P  R  R  S  L  H  S  R  G  A  K  K  I  V  S  N  L  P  A  V  T  T  P  V  K  L  L  R  Y  P  V  R  I  V  L  C  A  Y  M </second_frame>
            <third_frame>   K  T  S  C  K  G :   Q  R  D  K  E  K  N  I  *  C  R  E  E  K  H  I  I  P  F  V  T  V  M  M  R  Y  M  T  R  L  T  C  Y  Q  G  N  *  Q   : G  V  G  S  S  S  L  H  V  E  R  Q  P  S  T  L  Q  K  L  I  L  C  *  V  L  T  R  M  Q  L  R  *  C  H  L  S  S  *  Q  *  R  L  N  R  L  I  H  Y  R  E  L  K  V  C  L  I  G  L  S  F  A  S  N  C  C  V  M  L  T  V  *  Q  V  P  L  V  G  V  I  L  I  I  F  S  T  E  *  L  H  P  K  R  R  L  H  Q  G  D  L  C  T  V  V  V  Q  K  K  *  Y  R  T  Y  Q  Q  *  Q  L  Q  S  S  C  *  G  I  Q  F  E  S  C  C  V  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42228" stop="42211"/>
                    <exon start="42109" stop="41994"/>
                    <exon start="41865" stop="41466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDKLQRAKRQREEYLMQRGKAHNSFCDSYDEIHDQADLLSRKLARCWKQFLTRGKTTFHLAKAYTMLSINENAVKVMPFEQLAMKIESPNTLQRTKGLLDRLELRFKLLRDVDSVTSTIGWGNIDHLLNRVATPKKKATPRRSLHSRGAKKIVSNLPAVTTPVKLLRYPVRIVLCAYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54377" PGL_stop="55264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54377" e_stop="55264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="54377" e_stop="55264" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54377" stop="55264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGACGATGCGATTCTACCGAAACTGTGATTCCGACTGTTGCTGCCGCCGCCGCTGCTTCTTCTCTTGTTACTGTTGTTGCTGTCATTAATTTTCCGACGGGTTAGGGTTATATCTTTGTTTTCATTTCTGAATTGTTGGACTTTTGATTTGTTTGTAGCAAATTGTGATGGATTTGAGTCAATCTCAATCGAGTAATCTGTCGTTAGGGTTTAGTAGTCATGTCTCGCCGGTGATGAGCGCACCCAATCGGTCTCATATCGTCGATGATTCGATTGCTTTTCAGATCGATTCTAGGGTTAAGGACCAATCGTACCCGGGTACGCCGGTTCCACTTCAACTGATGGATAAACAAACGAAGGAGAATGGGAAGGAGGGGGGAGAGAGTGCGGATGAGGAGAGGGATGTTGAGGAGTTTCGAATTTTAGGGCATTCCATGTGTATTAAGCGGAAGAGAGATACTGATGCGAGTTCATCTTCTTCCTCTTCGAAGAGTTTTAAGGTTACGAGTTCTAATGAGAATTTGCTTGGGCTTGAGTCACGAAGAAATGCGGTTAGGGCCTGGGGTAATCAGGGTTTGCAGGTAGCTGACCCGGATATATTTGAGATTATGGAGAAGGAGAAGCAGAGACAGTACAAAGGGATTGAACTGATTGCTTCTGAAAATTTTGTATGCAAGGCTGTGATGGAGGCATTGGGGAGCCATTTGACAAATAAGTATTCTGAAGGAGCATCGGGGGCAAGGTATTATGGTGGTAATCAGTTTATTGATGAAATTGAGACATTATGTTGTAAGCGTGCGTTAGCTGCTTTTGGACTTGACCCGGAGAATTGGGGTGTGAATGTGCAACCATATTCATGTACTTCAGCAAACTTTGCAGTTTATAC</gDNA_template>
            <first_frame> L  D  D  A  I  L  P  K  L  *  F  R  L  L  L  P  P  P  L  L  L  L  L  L  L  L  L  L  S  L  I  F  R  R  V  R  V  I  S  L  F  S  F  L  N  C  W  T  F  D  L  F  V  A  N  C  D  G  F  E  S  I  S  I  E  *  S  V  V  R  V  *  *  S  C  L  A  G  D  E  R  T  Q  S  V  S  Y  R  R  *  F  D  C  F  S  D  R  F  *  G  *  G  P  I  V  P  G  Y  A  G  S  T  S  T  D  G  *  T  N  E  G  E  W  E  G  G  G  R  E  C  G  *  G  E  G  C  *  G  V  S  N  F  R  A  F  H  V  Y  *  A  E  E  R  Y  *  C  E  F  I  F  F  L  F  E  E  F  *  G  Y  E  F  *  *  E  F  A  W  A  *  V  T  K  K  C  G  *  G  L  G  *  S  G  F  A  G  S  *  P  G  Y  I  *  D  Y  G  E  G  E  A  E  T  V  Q  R  D  *  T  D  C  F  *  K  F  C  M  Q  G  C  D  G  G  I  G  E  P  F  D  K  *  V  F  *  R  S  I  G  G  K  V  L  W  W  *  S  V  Y  *  *  N  *  D  I  M  L  *  A  C  V  S  C  F  W  T  *  P  G  E  L  G  C  E  C  A  T  I  F  M  Y  F  S  K  L  C  S  L  Y </first_frame>
            <second_frame>  W  T  M  R  F  Y  R  N  C  D  S  D  C  C  C  R  R  R  C  F  F  S  C  Y  C  C  C  C  H  *  F  S  D  G  L  G  L  Y  L  C  F  H  F  *  I  V  G  L  L  I  C  L  *  Q  I  V  M  D  L  S  Q  S  Q  S  S  N  L  S  L  G  F  S  S  H  V  S  P  V  M  S  A  P  N  R  S  H  I  V  D  D  S  I  A  F  Q  I  D  S  R  V  K  D  Q  S  Y  P  G  T  P  V  P  L  Q  L  M  D  K  Q  T  K  E  N  G  K  E  G  G  E  S  A  D  E  E  R  D  V  E  E  F  R  I  L  G  H  S  M  C  I  K  R  K  R  D  T  D  A  S  S  S  S  S  S  S  K  S  F  K  V  T  S  S  N  E  N  L  L  G  L  E  S  R  R  N  A  V  R  A  W  G  N  Q  G  L  Q  V  A  D  P  D  I  F  E  I  M  E  K  E  K  Q  R  Q  Y  K  G  I  E  L  I  A  S  E  N  F  V  C  K  A  V  M  E  A  L  G  S  H  L  T  N  K  Y  S  E  G  A  S  G  A  R  Y  Y  G  G  N  Q  F  I  D  E  I  E  T  L  C  C  K  R  A  L  A  A  F  G  L  D  P  E  N  W  G  V  N  V  Q  P  Y  S  C  T  S  A  N  F  A  V  Y   </second_frame>
            <third_frame>   G  R  C  D  S  T  E  T  V  I  P  T  V  A  A  A  A  A  A  S  S  L  V  T  V  V  A  V  I  N  F  P  T  G  *  G  Y  I  F  V  F  I  S  E  L  L  D  F  *  F  V  C  S  K  L  *  W  I  *  V  N  L  N  R  V  I  C  R  *  G  L  V  V  M  S  R  R  *  *  A  H  P  I  G  L  I  S  S  M  I  R  L  L  F  R  S  I  L  G  L  R  T  N  R  T  R  V  R  R  F  H  F  N  *  W  I  N  K  R  R  R  M  G  R  R  G  E  R  V  R  M  R  R  G  M  L  R  S  F  E  F  *  G  I  P  C  V  L  S  G  R  E  I  L  M  R  V  H  L  L  P  L  R  R  V  L  R  L  R  V  L  M  R  I  C  L  G  L  S  H  E  E  M  R  L  G  P  G  V  I  R  V  C  R  *  L  T  R  I  Y  L  R  L  W  R  R  R  S  R  D  S  T  K  G  L  N  *  L  L  L  K  I  L  Y  A  R  L  *  W  R  H  W  G  A  I  *  Q  I  S  I  L  K  E  H  R  G  Q  G  I  M  V  V  I  S  L  L  M  K  L  R  H  Y  V  V  S  V  R  *  L  L  L  D  L  T  R  R  I  G  V  *  M  C  N  H  I  H  V  L  Q  Q  T  L  Q  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54537" stop="55262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIVMDLSQSQSSNLSLGFSSHVSPVMSAPNRSHIVDDSIAFQIDSRVKDQSYPGTPVPLQLMDKQTKENGKEGGESADEERDVEEFRILGHSMCIKRKRDTDASSSSSSSKSFKVTSSNENLLGLESRRNAVRAWGNQGLQVADPDIFEIMEKEKQRQYKGIELIASENFVCKAVMEALGSHLTNKYSEGASGARYYGGNQFIDEIETLCCKRALAAFGLDPENWGVNVQPYSCTSANFAVY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55290" PGL_stop="59678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55290" e_stop="55598"/>
            <exon e_start="56639" e_stop="57044"/>
            <exon e_start="58893" e_stop="58994"/>
            <exon e_start="59081" e_stop="59678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="55290" e_stop="55598" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="55599" i_stop="56638" i_length="1040"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56639" e_stop="57044" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57045" i_stop="58892" i_length="1848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58893" e_stop="58994" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.762" acc_prob="0.989">
            <gDNA_intron_boundary i_start="58995" i_stop="59080" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="59081" e_stop="59678" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55290" stop="55598"/>
              <exon start="56639" stop="56770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56639" stop="57044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="57044"/>
              <exon start="58893" stop="58994"/>
              <exon start="59081" stop="59676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56970" stop="57044"/>
              <exon start="58893" stop="58994"/>
              <exon start="59081" stop="59400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58893" stop="58994"/>
              <exon start="59081" stop="59290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59283" stop="59678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59317" stop="59678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATGGGATTGGATACACCATCTGGTGGAAACACAAGTCATGGGTATTATCTACCTAATGGGAGGAGAGTTTCAGGGGCTTCAATTTTCTTTGAGTCTCTCTCTTACAAGGTTGACCCCCAAACTGGGTATGTAGATTTTGATAAGCTCGAGGAAAGGGCTCTTGATTTCCGTCCCAAGATACTTATATGTGGGGGGAGTTCGTATCCCCGGGAATGGGATTATGCAAAGTTTAGACAGATTGCTGACAAATGTGGTGCGGTTTTGTTGTGCGATATGGCACAAATTAGTGGTCTCATTGCTGCAAAG : GAATGTGCGAGTCCGTTTGATTATTGTGATATAGTTACCTCAACAACTCACAAAAGTCTTCGAGGTCCTAGGGGAGGTATTATCTTTTATAGGAAAGGTTCAAAGCCAAGAAAGAGAGGCCTGCTCTTGAATCAAGGTGATGGCAGTGATAAGTATGATTTTGAGGAAAAGATAAACTTTGCTGTTTTTCCTGCACTGCAAGGAGGGCCACACAACAACCATATTGCTGCCCTCGCCATAGCATTGAAACAAGTGGCAACTCCTGATTACAGGGCTTATATGCAACAAGTTAAGAGAAATGCTCAGGCGTTGGCAGCTGCTTTATTGAGAAGAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAACCTTGGGTTAACAG : GCAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCG : GGACCCCTGCTATGACCTCACGAGGCTGTATAGAGAATGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAAATTACAAATTCGATACAGAGAGAGCATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCCTTGAGAACAATAAAGATGTTATCGAGTTACGGACACGTGTTGAAAATTTTGCAACCCTCTTTGCTATGCCTGGGTTTGAAGTATAATGTAGCTGGAAATGTAGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTCGTGGTTAGTGATTGAGTAGGCTATGTGATGTGTTCAAGTTTCCGTTGAGCTTAGCAGGCATGGATTAACTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTACTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTTTTTTTTGTCAAGGGTTTTGGTAAATTAAATAGTGTCACTGTTTCATTTTCCTATAGCTATTTTAAACACACTCGTTTCGGGTCTCACTATTCTTGGTTGTATCTATATATTATTATATCTTTAACATTCAACTT</gDNA_template>
            <first_frame> I  M  G  L  D  T  P  S  G  G  N  T  S  H  G  Y  Y  L  P  N  G  R  R  V  S  G  A  S  I  F  F  E  S  L  S  Y  K  V  D  P  Q  T  G  Y  V  D  F  D  K  L  E  E  R  A  L  D  F  R  P  K  I  L  I  C  G  G  S  S  Y  P  R  E  W  D  Y  A  K  F  R  Q  I  A  D  K  C  G  A  V  L  L  C  D  M  A  Q  I  S  G  L  I  A  A  K  :  E  C  A  S  P  F  D  Y  C  D  I  V  T  S  T  T  H  K  S  L  R  G  P  R  G  G  I  I  F  Y  R  K  G  S  K  P  R  K  R  G  L  L  L  N  Q  G  D  G  S  D  K  Y  D  F  E  E  K  I  N  F  A  V  F  P  A  L  Q  G  G  P  H  N  N  H  I  A  A  L  A  I  A  L  K  Q  V  A  T  P  D  Y  R  A  Y  M  Q  Q  V  K  R  N  A  Q  A  L  A  A  A  L  L  R  R  N  C  R  L  V  T  G  G  T  D  N  H  M  I  L  W  D  L  R  N  L  G  L  T   : G  K  N  F  E  K  V  C  E  L  C  H  I  T  L  N  K  V  M  V  F  D  D  N  G  S  I  T  P  G  G  V  R  I   : G  T  P  A  M  T  S  R  G  C  I  E  N  D  F  D  T  M  A  D  F  L  L  K  A  A  Q  I  T  N  S  I  Q  R  E  H  G  K  L  A  K  G  F  L  K  G  L  E  N  N  K  D  V  I  E  L  R  T  R  V  E  N  F  A  T  L  F  A  M  P  G  F  E  V  *  C  S  W  K  C  S  S  G  G  G  I  L  S  L  F  V  D  Q  P  L  L  W  M  G  R  T  A  V  H  P  T  R  G  *  *  L  S  R  L  C  D  V  F  K  F  P  L  S  L  A  G  M  D  *  L  M  I  C  H  N  G  V  F  C  I  L  I  Y  C  H  G  K  L  K  *  W  S  V  S  V  F  F  V  K  G  F  G  K  L  N  S  V  T  V  S  F  S  Y  S  Y  F  K  H  T  R  F  G  S  H  Y  S  W  L  Y  L  Y  I  I  I  S  L  T  F  N   </first_frame>
            <second_frame>  *  W  D  W  I  H  H  L  V  E  T  Q  V  M  G  I  I  Y  L  M  G  G  E  F  Q  G  L  Q  F  S  L  S  L  S  L  T  R  L  T  P  K  L  G  M  *  I  L  I  S  S  R  K  G  L  L  I  S  V  P  R  Y  L  Y  V  G  G  V  R  I  P  G  N  G  I  M  Q  S  L  D  R  L  L  T  N  V  V  R  F  C  C  A  I  W  H  K  L  V  V  S  L  L  Q  R :   N  V  R  V  R  L  I  I  V  I  *  L  P  Q  Q  L  T  K  V  F  E  V  L  G  E  V  L  S  F  I  G  K  V  Q  S  Q  E  R  E  A  C  S  *  I  K  V  M  A  V  I  S  M  I  L  R  K  R  *  T  L  L  F  F  L  H  C  K  E  G  H  T  T  T  I  L  L  P  S  P  *  H  *  N  K  W  Q  L  L  I  T  G  L  I  C  N  K  L  R  E  M  L  R  R  W  Q  L  L  Y  *  E  E  T  A  D  W  L  L  E  G  L  T  I  T  *  Y  C  G  I  *  E  T  L  G  *  Q  :  A  R  I  L  R  R  S  A  S  C  V  T  S  L  S  T  K  *  W  S  L  M  I  M  E  V  L  L  L  E  V  *  G  S  :  G  P  L  L  *  P  H  E  A  V  *  R  M  I  L  I  R  W  Q  I  S  S  S  R  Q  H  K  L  Q  I  R  Y  R  E  S  M  E  S  S  L  R  V  F  *  K  A  L  R  T  I  K  M  L  S  S  Y  G  H  V  L  K  I  L  Q  P  S  L  L  C  L  G  L  K  Y  N  V  A  G  N  V  V  L  V  E  E  F  F  L  Y  L  L  T  N  L  C  C  G  W  G  E  Q  R  C  T  Q  L  V  V  S  D  *  V  G  Y  V  M  C  S  S  F  R  *  A  *  Q  A  W  I  N  L  *  Y  A  T  M  E  C  F  A  S  L  S  T  A  M  V  N  *  S  N  G  L  C  Q  F  F  L  S  R  V  L  V  N  *  I  V  S  L  F  H  F  P  I  A  I  L  N  T  L  V  S  G  L  T  I  L  G  C  I  Y  I  L  L  Y  L  *  H  S  T  </second_frame>
            <third_frame>   N  G  I  G  Y  T  I  W  W  K  H  K  S  W  V  L  S  T  *  W  E  E  S  F  R  G  F  N  F  L  *  V  S  L  L  Q  G  *  P  P  N  W  V  C  R  F  *  *  A  R  G  K  G  S  *  F  P  S  Q  D  T  Y  M  W  G  E  F  V  S  P  G  M  G  L  C  K  V  *  T  D  C  *  Q  M  W  C  G  F  V  V  R  Y  G  T  N  *  W  S  H  C  C  K   : G  M  C  E  S  V  *  L  L  *  Y  S  Y  L  N  N  S  Q  K  S  S  R  S  *  G  R  Y  Y  L  L  *  E  R  F  K  A  K  K  E  R  P  A  L  E  S  R  *  W  Q  *  *  V  *  F  *  G  K  D  K  L  C  C  F  S  C  T  A  R  R  A  T  Q  Q  P  Y  C  C  P  R  H  S  I  E  T  S  G  N  S  *  L  Q  G  L  Y  A  T  S  *  E  K  C  S  G  V  G  S  C  F  I  E  K  K  L  Q  T  G  Y  W  R  D  *  Q  S  H  D  I  V  G  S  K  K  P  W  V  N  R :   Q  E  F  *  E  G  L  R  V  V  S  H  H  S  Q  Q  S  N  G  L  *  *  *  W  K  Y  Y  S  W  R  C  E  D  R :   D  P  C  Y  D  L  T  R  L  Y  R  E  *  F  *  Y  D  G  R  F  P  P  Q  G  S  T  N  Y  K  F  D  T  E  R  A  W  K  A  R  *  G  F  S  E  R  P  *  E  Q  *  R  C  Y  R  V  T  D  T  C  *  K  F  C  N  P  L  C  Y  A  W  V  *  S  I  M  *  L  E  M  *  F  W  W  R  N  S  F  F  I  C  *  P  T  F  V  V  D  G  E  N  S  G  A  P  N  S  W  L  V  I  E  *  A  M  *  C  V  Q  V  S  V  E  L  S  R  H  G  L  T  Y  D  M  P  Q  W  S  V  L  H  P  Y  L  L  P  W  *  I  E  V  M  V  C  V  S  F  F  C  Q  G  F  W  *  I  K  *  C  H  C  F  I  F  L  *  L  F  *  T  H  S  F  R  V  S  L  F  L  V  V  S  I  Y  Y  Y  I  F  N  I  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55290" stop="55598"/>
                    <exon start="56639" stop="57044"/>
                    <exon start="58893" stop="58994"/>
                    <exon start="59081" stop="59304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGLDTPSGGNTSHGYYLPNGRRVSGASIFFESLSYKVDPQTGYVDFDKLEERALDFRPKILICGGSSYPREWDYAKFRQIADKCGAVLLCDMAQISGLIAAKECASPFDYCDIVTSTTHKSLRGPRGGIIFYRKGSKPRKRGLLLNQGDGSDKYDFEEKINFAVFPALQGGPHNNHIAALAIALKQVATPDYRAYMQQVKRNAQALAAALLRRNCRLVTGGTDNHMILWDLRNLGLTGKNFEKVCELCHITLNKVMVFDDNGSITPGGVRIGTPAMTSRGCIENDFDTMADFLLKAAQITNSIQREHGKLAKGFLKGLENNKDVIELRTRVENFATLFAMPGFEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="69420" PGL_stop="70212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69420" e_stop="70212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="69420" e_stop="70212" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69420" stop="70153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69428" stop="69971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69428" stop="69873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69429" stop="70027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69443" stop="70212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69445" stop="69872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69456" stop="70086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346902" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGACATTGAAAATGGGTGGTCAGTTCGTTGTGCTCAGTTTAGCTGTATTCTTCTTCATCAGTTTCTCACAAGCAACATCAACTTCAATAAAACCCTTAATTTTCATCGAGACCAATCATAGCGCCACTGCTGCTAGAAGCTGCTCATACACATTGACCATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATGCTTATGGATTTGAGGTCTATGCGCCCAGGATAGATAATCCATCATCAAGGATATTCGAGACCTGTTCTACGGATACTTTCCAGATCCGCGGCCCCTGTATTTATGAGATCTGCTACCTTTACTTGAAGAGAGTTGGATCCGACGGCTGGAAACCGGAGAGCGTCAAGGTGTACGGTTCAGATCGTCCTGCGATTACCTTTAAATATAATAAGCTTCTTCCTAATGGAGTCTGGTATGGATTTAATCACTGTCGTAAGATCATGTAGCTGATCTGCCGTAGAATTCCACTATCCATCAAATTTGTTTTTTTAATTTATGTATTTAATCTCTGTTTTGTTTGCTTTCAGAGATTAGTTTATCGCCAAATAAAGGTATTTTTTTGATTTCTCAGGTACCTTGTTGTTACAATTTTAGCCTTTATAAATGAACTTTATCAGATGCGTTGTATCCATAAATGGGGATTTTGATTCGCCCTATTGTAATTTTTTTGGTTAAACCTTATTATAATTTCATTCACAGCATCTACGTAATAAAAAGGAAAATATATGTGTTCATATTATAAACGGCAAC</gDNA_template>
            <first_frame> M  T  L  K  M  G  G  Q  F  V  V  L  S  L  A  V  F  F  F  I  S  F  S  Q  A  T  S  T  S  I  K  P  L  I  F  I  E  T  N  H  S  A  T  A  A  R  S  C  S  Y  T  L  T  I  K  T  S  C  S  S  P  K  Y  T  R  D  R  V  S  I  A  F  G  D  A  Y  G  F  E  V  Y  A  P  R  I  D  N  P  S  S  R  I  F  E  T  C  S  T  D  T  F  Q  I  R  G  P  C  I  Y  E  I  C  Y  L  Y  L  K  R  V  G  S  D  G  W  K  P  E  S  V  K  V  Y  G  S  D  R  P  A  I  T  F  K  Y  N  K  L  L  P  N  G  V  W  Y  G  F  N  H  C  R  K  I  M  *  L  I  C  R  R  I  P  L  S  I  K  F  V  F  L  I  Y  V  F  N  L  C  F  V  C  F  Q  R  L  V  Y  R  Q  I  K  V  F  F  *  F  L  R  Y  L  V  V  T  I  L  A  F  I  N  E  L  Y  Q  M  R  C  I  H  K  W  G  F  *  F  A  L  L  *  F  F  W  L  N  L  I  I  I  S  F  T  A  S  T  *  *  K  G  K  Y  M  C  S  Y  Y  K  R  Q  </first_frame>
            <second_frame>  *  H  *  K  W  V  V  S  S  L  C  S  V  *  L  Y  S  S  S  S  V  S  H  K  Q  H  Q  L  Q  *  N  P  *  F  S  S  R  P  I  I  A  P  L  L  L  E  A  A  H  T  H  *  P  S  K  Q  A  V  L  H  L  N  T  P  E  T  E  S  V  L  L  L  E  M  L  M  D  L  R  S  M  R  P  G  *  I  I  H  H  Q  G  Y  S  R  P  V  L  R  I  L  S  R  S  A  A  P  V  F  M  R  S  A  T  F  T  *  R  E  L  D  P  T  A  G  N  R  R  A  S  R  C  T  V  Q  I  V  L  R  L  P  L  N  I  I  S  F  F  L  M  E  S  G  M  D  L  I  T  V  V  R  S  C  S  *  S  A  V  E  F  H  Y  P  S  N  L  F  F  *  F  M  Y  L  I  S  V  L  F  A  F  R  D  *  F  I  A  K  *  R  Y  F  F  D  F  S  G  T  L  L  L  Q  F  *  P  L  *  M  N  F  I  R  C  V  V  S  I  N  G  D  F  D  S  P  Y  C  N  F  F  G  *  T  L  L  *  F  H  S  Q  H  L  R  N  K  K  E  N  I  C  V  H  I  I  N  G  N </second_frame>
            <third_frame>   D  I  E  N  G  W  S  V  R  C  A  Q  F  S  C  I  L  L  H  Q  F  L  T  S  N  I  N  F  N  K  T  L  N  F  H  R  D  Q  S  *  R  H  C  C  *  K  L  L  I  H  I  D  H  Q  N  K  L  F  F  T  *  I  H  Q  R  Q  S  Q  Y  C  F  W  R  C  L  W  I  *  G  L  C  A  Q  D  R  *  S  I  I  K  D  I  R  D  L  F  Y  G  Y  F  P  D  P  R  P  L  Y  L  *  D  L  L  P  L  L  E  E  S  W  I  R  R  L  E  T  G  E  R  Q  G  V  R  F  R  S  S  C  D  Y  L  *  I  *  *  A  S  S  *  W  S  L  V  W  I  *  S  L  S  *  D  H  V  A  D  L  P  *  N  S  T  I  H  Q  I  C  F  F  N  L  C  I  *  S  L  F  C  L  L  S  E  I  S  L  S  P  N  K  G  I  F  L  I  S  Q  V  P  C  C  Y  N  F  S  L  Y  K  *  T  L  S  D  A  L  Y  P  *  M  G  I  L  I  R  P  I  V  I  F  L  V  K  P  Y  Y  N  F  I  H  S  I  Y  V  I  K  R  K  I  Y  V  F  I  L  *  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69420" stop="69908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTLKMGGQFVVLSLAVFFFISFSQATSTSIKPLIFIETNHSATAARSCSYTLTIKTSCSSPKYTRDRVSIAFGDAYGFEVYAPRIDNPSSRIFETCSTDTFQIRGPCIYEICYLYLKRVGSDGWKPESVKVYGSDRPAITFKYNKLLPNGVWYGFNHCRKIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="72116" PGL_stop="70859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72116" e_stop="70859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72116" e_stop="70859" e_length="1258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72116" stop="71529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72114" stop="70859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGAGAGCGTTTCTTACAGTGATCAAATCCAAACCAAACTCCATTAGGAAGAAACTTATCATACTTAAAGGTAATAGCAGGACGATCTGGACCGTAAACTTTGACGCTCTCCGGTTTCCAGCCGTCCGATCCAACTCTCTTCAAATTTAGGTAGCAGATCTCATAAATACAGGGGCCACGGATCTGAAAAGTATCAGTAGAACAGCTTTCGAATATCTTCGACGACGGATCATCTAGCTTTGGCGCGTGAACCTCAAAACCGTAAGAATCTCCAAAAGCAATACTGACTCTGTCTCTGGTGTATTTAGGTGAAGAACAGCTTGTTTTGATTGTCAATGTGTATGAGCAGCTTCTAGCAGCAGCAGCGGTGCTCTGATTGGTTTCGATGTAAATTAGGGGTTTTGTTGAAGTTGAAGTAATTGATTTTGCTTGAGAGAGACAGAAGAAGAAAGCCACTAAGCTGGGGAACACAAAGAGGTGAACACTCATCTTCATTATCACCATTTAATTTTGATTATTGTTGTTGACGAACTTTAATAGTCTCACCACCCCTATTTTTCTTTTTTCTTTTTCTTTTTTTACGCATCAGGCATTGCGTATCGCATTGACGAAAGAGATTTCAATGCAACGTGGCTACTAAAAACAGTAAATAAACTTTTTAAATAAAGAATTGGTCCTACATTCTATAAACTACTACTCCAATATTGGAGTTAACTCTATACGTAATCTGGAAATTTCGTAAATAGTAGTAATTATAATAAAGTTAATTATATTTTATAGCTATAGTTTATATATTTAAGTGTTATAATTATCACTTAAATTATTTTATTGGTGATTTTGTATAATTTGCGCTTATATTTATTTAATTGAGTTATATTTGTATAAATTTGAAATAACGAATTGATACAAGCACAAGCATCTGAATTTTAAATAGTTACACAAATTATATTATACAAACGTTATACAAACTATGAATAGTACAAGATTTGAATTATACAAATTCAAAGACTTAGCCCATGTAATTATCGTTGAATGTTGATCGCGAGTGGTAATCAACAAAAACTATGACAATGATGACTAAGAATTAGTATATATTTACATAATCATGTAGTTTAAGAATTAGTATATATTTACATAATCATGTAGTTTAGTATTCCCTCCGTCCTAATTTTGCTTTTTCCTTTAATTTTACTTTCGTACTTCAAAATTACTTTGAGTTTACAATTTTATATCGATTCAAAACATTAAAATCTAAA</gDNA_template>
            <first_frame> *  R  E  R  F  L  Q  *  S  N  P  N  Q  T  P  L  G  R  N  L  S  Y  L  K  V  I  A  G  R  S  G  P  *  T  L  T  L  S  G  F  Q  P  S  D  P  T  L  F  K  F  R  *  Q  I  S  *  I  Q  G  P  R  I  *  K  V  S  V  E  Q  L  S  N  I  F  D  D  G  S  S  S  F  G  A  *  T  S  K  P  *  E  S  P  K  A  I  L  T  L  S  L  V  Y  L  G  E  E  Q  L  V  L  I  V  N  V  Y  E  Q  L  L  A  A  A  A  V  L  *  L  V  S  M  *  I  R  G  F  V  E  V  E  V  I  D  F  A  *  E  R  Q  K  K  K  A  T  K  L  G  N  T  K  R  *  T  L  I  F  I  I  T  I  *  F  *  L  L  L  L  T  N  F  N  S  L  T  T  P  I  F  L  F  S  F  S  F  F  T  H  Q  A  L  R  I  A  L  T  K  E  I  S  M  Q  R  G  Y  *  K  Q  *  I  N  F  L  N  K  E  L  V  L  H  S  I  N  Y  Y  S  N  I  G  V  N  S  I  R  N  L  E  I  S  *  I  V  V  I  I  I  K  L  I  I  F  Y  S  Y  S  L  Y  I  *  V  L  *  L  S  L  K  L  F  Y  W  *  F  C  I  I  C  A  Y  I  Y  L  I  E  L  Y  L  Y  K  F  E  I  T  N  *  Y  K  H  K  H  L  N  F  K  *  L  H  K  L  Y  Y  T  N  V  I  Q  T  M  N  S  T  R  F  E  L  Y  K  F  K  D  L  A  H  V  I  I  V  E  C  *  S  R  V  V  I  N  K  N  Y  D  N  D  D  *  E  L  V  Y  I  Y  I  I  M  *  F  K  N  *  Y  I  F  T  *  S  C  S  L  V  F  P  P  S  *  F  C  F  F  L  *  F  Y  F  R  T  S  K  L  L  *  V  Y  N  F  I  S  I  Q  N  I  K  I  *  </first_frame>
            <second_frame>  R  E  S  V  S  Y  S  D  Q  I  Q  T  K  L  H  *  E  E  T  Y  H  T  *  R  *  *  Q  D  D  L  D  R  K  L  *  R  S  P  V  S  S  R  P  I  Q  L  S  S  N  L  G  S  R  S  H  K  Y  R  G  H  G  S  E  K  Y  Q  *  N  S  F  R  I  S  S  T  T  D  H  L  A  L  A  R  E  P  Q  N  R  K  N  L  Q  K  Q  Y  *  L  C  L  W  C  I  *  V  K  N  S  L  F  *  L  S  M  C  M  S  S  F  *  Q  Q  Q  R  C  S  D  W  F  R  C  K  L  G  V  L  L  K  L  K  *  L  I  L  L  E  R  D  R  R  R  K  P  L  S  W  G  T  Q  R  G  E  H  S  S  S  L  S  P  F  N  F  D  Y  C  C  *  R  T  L  I  V  S  P  P  L  F  F  F  F  L  F  L  F  L  R  I  R  H  C  V  S  H  *  R  K  R  F  Q  C  N  V  A  T  K  N  S  K  *  T  F  *  I  K  N  W  S  Y  I  L  *  T  T  T  P  I  L  E  L  T  L  Y  V  I  W  K  F  R  K  *  *  *  L  *  *  S  *  L  Y  F  I  A  I  V  Y  I  F  K  C  Y  N  Y  H  L  N  Y  F  I  G  D  F  V  *  F  A  L  I  F  I  *  L  S  Y  I  C  I  N  L  K  *  R  I  D  T  S  T  S  I  *  I  L  N  S  Y  T  N  Y  I  I  Q  T  L  Y  K  L  *  I  V  Q  D  L  N  Y  T  N  S  K  T  *  P  M  *  L  S  L  N  V  D  R  E  W  *  S  T  K  T  M  T  M  M  T  K  N  *  Y  I  F  T  *  S  C  S  L  R  I  S  I  Y  L  H  N  H  V  V  *  Y  S  L  R  P  N  F  A  F  S  F  N  F  T  F  V  L  Q  N  Y  F  E  F  T  I  L  Y  R  F  K  T  L  K  S  K </second_frame>
            <third_frame>   E  R  A  F  L  T  V  I  K  S  K  P  N  S  I  R  K  K  L  I  I  L  K  G  N  S  R  T  I  W  T  V  N  F  D  A  L  R  F  P  A  V  R  S  N  S  L  Q  I  *  V  A  D  L  I  N  T  G  A  T  D  L  K  S  I  S  R  T  A  F  E  Y  L  R  R  R  I  I  *  L  W  R  V  N  L  K  T  V  R  I  S  K  S  N  T  D  S  V  S  G  V  F  R  *  R  T  A  C  F  D  C  Q  C  V  *  A  A  S  S  S  S  S  G  A  L  I  G  F  D  V  N  *  G  F  C  *  S  *  S  N  *  F  C  L  R  E  T  E  E  E  S  H  *  A  G  E  H  K  E  V  N  T  H  L  H  Y  H  H  L  I  L  I  I  V  V  D  E  L  *  *  S  H  H  P  Y  F  S  F  F  F  F  F  F  Y  A  S  G  I  A  Y  R  I  D  E  R  D  F  N  A  T  W  L  L  K  T  V  N  K  L  F  K  *  R  I  G  P  T  F  Y  K  L  L  L  Q  Y  W  S  *  L  Y  T  *  S  G  N  F  V  N  S  S  N  Y  N  K  V  N  Y  I  L  *  L  *  F  I  Y  L  S  V  I  I  I  T  *  I  I  L  L  V  I  L  Y  N  L  R  L  Y  L  F  N  *  V  I  F  V  *  I  *  N  N  E  L  I  Q  A  Q  A  S  E  F  *  I  V  T  Q  I  I  L  Y  K  R  Y  T  N  Y  E  *  Y  K  I  *  I  I  Q  I  Q  R  L  S  P  C  N  Y  R  *  M  L  I  A  S  G  N  Q  Q  K  L  *  Q  *  *  L  R  I  S  I  Y  L  H  N  H  V  V  *  E  L  V  Y  I  Y  I  I  M  *  F  S  I  P  S  V  L  I  L  L  F  P  L  I  L  L  S  Y  F  K  I  T  L  S  L  Q  F  Y  I  D  S  K  H  *  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0057J16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71622" PGL_stop="72319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71622" e_stop="72319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="71622" e_stop="72319" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71622" stop="72319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71680" stop="72284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATGAGTGTTCACCTCTTTGTGTTCCCCAGCTTAGTGGCTTTCTTCTTCTGTCTCTCTCAAGCAAAATCAATTACTTCAACTTCAACAAAACCCCTAATTTACATCGAAACCAATCAGAGCACCGCTGCTGCTGCTAGAAGCTGCTCATACACATTGACAATCAAAACAAGCTGTTCTTCACCTAAATACACCAGAGACAGAGTCAGTATTGCTTTTGGAGATTCTTACGGTTTTGAGGTTCACGCGCCAAAGCTAGATGATCCGTCGTCGAAGATATTCGAAAGCTGTTCTACTGATACTTTTCAGATCCGTGGCCCCTGTATTTATGAGATCTGCTACCTAAATTTGAAGAGAGTTGGATCGGACGGCTGGAAACCGGAGAGCGTCAAAGTTTACGGTCCAGATCGTCCTGCTATTACCTTTAAGTATGATAAGTTTCTTCCTAATGGAGTTTGGTTTGGATTTGATCACTGTAAGAAACGCTCTCTCTAGGAATATGTTGTGTATGAAATTTGCTTTTTGCAGATTTAATCCATGTATTTAAATGTGTTGTTTGGATACAATGAACATTTGGTACGATAGCGTTAATGGGAGACGATGGTGAATGAAGAGGATAAAGTGCCCTGTACTAATATTTTAAAAATAACTTTGAGTTGTGAATTAGTTTCAATATAGTAATTAAATCTGAATCAAT</gDNA_template>
            <first_frame> E  D  E  C  S  P  L  C  V  P  Q  L  S  G  F  L  L  L  S  L  S  S  K  I  N  Y  F  N  F  N  K  T  P  N  L  H  R  N  Q  S  E  H  R  C  C  C  *  K  L  L  I  H  I  D  N  Q  N  K  L  F  F  T  *  I  H  Q  R  Q  S  Q  Y  C  F  W  R  F  L  R  F  *  G  S  R  A  K  A  R  *  S  V  V  E  D  I  R  K  L  F  Y  *  Y  F  S  D  P  W  P  L  Y  L  *  D  L  L  P  K  F  E  E  S  W  I  G  R  L  E  T  G  E  R  Q  S  L  R  S  R  S  S  C  Y  Y  L  *  V  *  *  V  S  S  *  W  S  L  V  W  I  *  S  L  *  E  T  L  S  L  G  I  C  C  V  *  N  L  L  F  A  D  L  I  H  V  F  K  C  V  V  W  I  Q  *  T  F  G  T  I  A  L  M  G  D  D  G  E  *  R  G  *  S  A  L  Y  *  Y  F  K  N  N  F  E  L  *  I  S  F  N  I  V  I  K  S  E  S   </first_frame>
            <second_frame>  K  M  S  V  H  L  F  V  F  P  S  L  V  A  F  F  F  C  L  S  Q  A  K  S  I  T  S  T  S  T  K  P  L  I  Y  I  E  T  N  Q  S  T  A  A  A  A  R  S  C  S  Y  T  L  T  I  K  T  S  C  S  S  P  K  Y  T  R  D  R  V  S  I  A  F  G  D  S  Y  G  F  E  V  H  A  P  K  L  D  D  P  S  S  K  I  F  E  S  C  S  T  D  T  F  Q  I  R  G  P  C  I  Y  E  I  C  Y  L  N  L  K  R  V  G  S  D  G  W  K  P  E  S  V  K  V  Y  G  P  D  R  P  A  I  T  F  K  Y  D  K  F  L  P  N  G  V  W  F  G  F  D  H  C  K  K  R  S  L  *  E  Y  V  V  Y  E  I  C  F  L  Q  I  *  S  M  Y  L  N  V  L  F  G  Y  N  E  H  L  V  R  *  R  *  W  E  T  M  V  N  E  E  D  K  V  P  C  T  N  I  L  K  I  T  L  S  C  E  L  V  S  I  *  *  L  N  L  N  Q  </second_frame>
            <third_frame>   R  *  V  F  T  S  L  C  S  P  A  *  W  L  S  S  S  V  S  L  K  Q  N  Q  L  L  Q  L  Q  Q  N  P  *  F  T  S  K  P  I  R  A  P  L  L  L  L  E  A  A  H  T  H  *  Q  S  K  Q  A  V  L  H  L  N  T  P  E  T  E  S  V  L  L  L  E  I  L  T  V  L  R  F  T  R  Q  S  *  M  I  R  R  R  R  Y  S  K  A  V  L  L  I  L  F  R  S  V  A  P  V  F  M  R  S  A  T  *  I  *  R  E  L  D  R  T  A  G  N  R  R  A  S  K  F  T  V  Q  I  V  L  L  L  P  L  S  M  I  S  F  F  L  M  E  F  G  L  D  L  I  T  V  R  N  A  L  S  R  N  M  L  C  M  K  F  A  F  C  R  F  N  P  C  I  *  M  C  C  L  D  T  M  N  I  W  Y  D  S  V  N  G  R  R  W  *  M  K  R  I  K  C  P  V  L  I  F  *  K  *  L  *  V  V  N  *  F  Q  Y  S  N  *  I  *  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71623" stop="72117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSVHLFVFPSLVAFFFCLSQAKSITSTSTKPLIYIETNQSTAAAARSCSYTLTIKTSCSSPKYTRDRVSIAFGDSYGFEVHAPKLDDPSSKIFESCSTDTFQIRGPCIYEICYLNLKRVGSDGWKPESVKVYGPDRPAITFKYDKFLPNGVWFGFDHCKKRSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="75305" PGL_stop="73177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75277" e_stop="75160"/>
            <exon e_start="75082" e_stop="74765"/>
            <exon e_start="74674" e_stop="74486"/>
            <exon e_start="74345" e_stop="74270"/>
            <exon e_start="74168" e_stop="73605"/>
            <exon e_start="73457" e_stop="73177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.332" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75277" e_stop="75160" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.332" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75159" i_stop="75083" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75082" e_stop="74765" e_length="318"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74674" e_stop="74486" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74485" i_stop="74346" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74345" e_stop="74270" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.914" acc_prob="0.916">
            <gDNA_intron_boundary i_start="74269" i_stop="74169" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="74168" e_stop="73605" e_length="564"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73457" e_stop="73177" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75277" stop="75160"/>
              <exon start="75082" stop="74765"/>
              <exon start="74674" stop="74486"/>
              <exon start="74345" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75277" stop="75160"/>
              <exon start="75082" stop="74765"/>
              <exon start="74674" stop="74658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74779" stop="74765"/>
              <exon start="74674" stop="74486"/>
              <exon start="74345" stop="74270"/>
              <exon start="74168" stop="73703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74779" stop="74765"/>
              <exon start="74674" stop="74486"/>
              <exon start="74345" stop="74270"/>
              <exon start="74168" stop="73800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74486"/>
              <exon start="74345" stop="74270"/>
              <exon start="74168" stop="73605"/>
              <exon start="73457" stop="73428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368378" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74052" stop="73605"/>
              <exon start="73457" stop="73196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73969" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368379" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73781" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73744" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73666" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTG : GTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAG : CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTG : CACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAG : ATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG : GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</gDNA_template>
            <first_frame> I  D  *  T  A  S  Q  D  N  L  Q  K  H  K  A  P  F  V  F  T  N  S  G  E  S  L  S  F  *  R  C  H  K  G  N  S  V  T  F   : G  C  R  Y  E  G  *  V  H  T  S  K  R  G  C  N  N  A  E  R  I  T  R  R  V  V  H  H  S  V  R  G  G  G  N  D  *  I  *  N  G  E  *  A  N  C  L  D  F  Q  I  W  R  Y  D  R  R  S  R  G  I  V  L  *  T  S  E  L  H  V  S  N  Q  N  T  F  T  A  L  E  D  K  N  *  *  F  D  *  S  N  E  N  Q  T  R  R  *  Y  H  H  D  Q  E  L  P  S   : A  S  *  E  A  Q  R  L  K  A  W  R  F  T  S  W  S  G  G  R  L  W  *  S  K  H  V  C  *  L  A  N  C  C  *  Y  R  *  C  Y  F  P  *  R  T  S  Q  G  *  I  R  S  *  Y  R  R  R  S  R  K  N  S  T   : A  H  C  S  I  E  R  A  *  R  V  C  H  G  A  S  *  T  W  M  Q  H  K  S  P  R :   C  K  W  S  H  R  V  V  G  S  Y  S  S  K  T  P  F  N  I  S  R  V  V  P  L  G  F  R  L  R  S  L  H  C  W  *  P  L  M  H  S  S  *  K  K  *  L  N  S  D  E  R  T  P  K  T  W  I  T  S  *  L  E  G  P  R  W  I  N  C  Y  S  C  C  T  G  R  K  S  *  R  H  G  K  A  T  S  N  E  W  S  *  D  K  R  *  V  K  V  Q  A  F  F  N  E  P  K  *  H  A  T  K  A  R  S  R  T  Q  N  Y  G  I  R  H  N  G  *  S  C  S  K  M  A  P  T  R  E  A  T  Q  F  R  K  H  *  G  S  N  V  F  *  S  *  H  I  Q  R  P  S  C  Y  Q  E  K  N  S  L  Q  *  T  W  Q  I  N  Y  A  S  K  F  T  C  R  A  Q  D  H  C  R :   S  E  I  W  I  *  C  N  K  C  I  D  Y  G  S  R  R  I  R  N  *  L  N  *  S  N  K  R  *  *  Q  A  I  Y  S  *  R  S  K  L  L  V  A  I  P  I  S  D  T  *  K  C  L  L  R  C  I  Y  H  *  R  T  Q  K  K  N  V  *  W  T  Y  I  S  F  L  F  V  W  H  I  E  N  L  L  Q  *  Y  I  L  K  L  L  P  </first_frame>
            <second_frame>  L  I  E  Q  L  P  K  T  I  C  K  S  I  R  H  H  L  F  L  P  T  V  E  K  V  Y  L  F  K  G  V  T  K  E  I  L  L  L  L  :  V  A  D  M  K  A  E  Y  I  P  P  R  E  D  V  I  M  Q  N  E  S  P  D  E  L  Y  I  I  V  S  G  E  V  E  M  I  E  S  E  M  E  N  E  P  T  V  W  T  F  K  S  G  D  M  I  G  E  V  G  A  L  C  C  R  P  Q  S  Y  T  Y  R  T  K  T  L  S  Q  L  L  K  I  R  T  S  N  L  I  E  A  M  K  T  R  Q  E  D  N  I  I  M  I  K  N  F  L  Q  :  H  H  K  K  L  K  G  L  R  L  G  D  L  L  H  G  V  G  G  D  Y  G  D  P  N  M  Y  V  N  L  L  T  V  A  S  T  G  N  A  T  F  L  E  E  L  L  K  A  K  L  D  P  D  I  G  D  A  Q  G  R  T  P  L  :  H  I  A  A  S  K  G  H  E  E  C  V  M  V  L  L  R  H  G  C  N  I  N  L  R   : D  V  N  G  H  T  A  L  W  E  A  I  A  A  K  H  H  S  T  F  H  V  L  Y  H  W  A  S  V  S  D  P  Y  I  A  G  D  L  L  C  T  A  A  R  K  N  D  L  T  V  M  K  E  L  L  K  H  G  L  Q  V  D  S  K  D  R  D  G  S  T  A  I  H  V  A  L  E  E  N  L  E  D  M  V  K  L  L  L  M  N  G  A  E  I  N  D  K  L  K  Y  K  L  S  S  M  N  L  N  D  M  L  Q  K  R  E  V  G  H  R  I  M  V  S  D  T  M  D  E  V  A  Q  K  W  R  Q  Q  E  K  Q  H  N  S  E  S  T  R  D  Q  M  S  F  R  V  S  I  Y  R  G  H  P  V  I  R  R  R  T  H  C  S  E  P  G  K  L  I  T  L  P  N  S  L  A  E  L  K  I  I  A   : G  Q  K  F  G  F  D  A  T  N  A  S  I  T  D  Q  E  G  S  E  I  D  S  I  E  V  I  R  D  N  D  K  L  F  I  V  E  G  P  N  C  L  *  Q  Y  L  L  V  T  L  K  S  V  C  *  D  A  Y  I  T  K  E  L  R  R  K  M  Y  S  G  H  T  F  L  S  Y  L  C  G  I  L  R  T  Y  C  S  D  I  Y  S  N  F  C  L </second_frame>
            <third_frame>   *  L  N  S  F  P  R  Q  F  A  K  A  *  G  T  I  C  F  Y  Q  Q  W  R  K  F  I  F  L  K  V  S  Q  R  K  F  C  Y  F  W :   L  Q  I  *  R  L  S  T  Y  L  Q  E  R  M  *  *  C  R  T  N  H  Q  T  S  C  T  S  *  C  Q  G  R  W  K  *  L  N  L  K  W  R  M  S  Q  L  F  G  L  S  N  L  E  I  *  *  E  K  *  G  H  C  V  V  D  L  R  A  T  R  I  E  P  K  H  F  H  S  S  *  R  *  E  L  V  I  *  L  K  Q  *  K  P  D  K  K  I  I  S  S  *  S  R  T  S  F  S :   I  I  R  S  S  K  A  *  G  L  E  I  Y  F  M  E  W  G  E  I  M  V  I  Q  T  C  M  L  T  C  *  L  L  L  V  Q  V  M  L  L  S  L  K  N  F  S  R  L  N  *  I  L  I  S  E  T  L  K  E  E  L  H  C :   T  L  Q  H  R  K  G  M  K  S  V  S  W  C  F  L  D  M  D  A  T  *  I  S  E  :  M  *  M  V  T  P  R  C  G  K  L  *  Q  Q  N  T  I  Q  H  F  T  C  C  T  I  G  L  P  S  P  I  P  T  L  L  V  T  S  Y  A  Q  Q  L  E  K  M  T  *  Q  *  *  K  N  S  *  N  M  D  Y  K  L  T  R  R  T  A  M  D  Q  L  L  F  M  L  H  W  K  K  I  L  K  T  W  *  S  Y  F  *  *  M  E  L  R  *  T  I  S  *  S  T  S  F  L  Q  *  T  *  M  T  C  Y  K  S  A  K  *  D  T  E  L  W  Y  P  T  Q  W  M  K  L  L  K  N  G  A  N  K  R  S  N  T  I  Q  K  A  L  G  I  K  C  L  L  E  L  A  Y  T  E  A  I  L  L  S  G  E  E  L  I  A  V  N  L  A  N  *  L  R  F  Q  I  H  L  Q  S  S  R  S  L  Q  :  V  R  N  L  D  L  M  Q  Q  M  H  R  L  R  I  K  K  D  Q  K  L  T  Q  L  K  *  *  E  I  M  T  S  Y  L  *  L  K  V  Q  T  A  C  S  N  T  Y  *  *  H  L  K  V  S  V  K  M  H  I  S  L  K  N  S  E  E  K  C  I  V  D  I  H  F  F  P  I  C  V  A  Y  *  E  P  I  A  V  I  Y  T  Q  T  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75276" stop="75160"/>
                    <exon start="75082" stop="74765"/>
                    <exon start="74674" stop="74486"/>
                    <exon start="74345" stop="74270"/>
                    <exon start="74168" stop="73605"/>
                    <exon start="73457" stop="73330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEQLPKTICKSIRHHLFLPTVEKVYLFKGVTKEILLLLVADMKAEYIPPREDVIMQNESPDELYIIVSGEVEMIESEMENEPTVWTFKSGDMIGEVGALCCRPQSYTYRTKTLSQLLKIRTSNLIEAMKTRQEDNIIMIKNFLQHHKKLKGLRLGDLLHGVGGDYGDPNMYVNLLTVASTGNATFLEELLKAKLDPDIGDAQGRTPLHIAASKGHEECVMVLLRHGCNINLRDVNGHTALWEAIAAKHHSTFHVLYHWASVSDPYIAGDLLCTAARKNDLTVMKELLKHGLQVDSKDRDGSTAIHVALEENLEDMVKLLLMNGAEINDKLKYKLSSMNLNDMLQKREVGHRIMVSDTMDEVAQKWRQQEKQHNSESTRDQMSFRVSIYRGHPVIRRRTHCSEPGKLITLPNSLAELKIIAGQKFGFDATNASITDQEGSEIDSIEVIRDNDKLFIVEGPNCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74171" e_stop="73605"/>
            <exon e_start="73457" e_stop="73177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74171" e_stop="73605" e_length="567"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73457" e_stop="73177" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74052" stop="73605"/>
              <exon start="73457" stop="73196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73969" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368379" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73781" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246294" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73744" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73666" stop="73605"/>
              <exon start="73457" stop="73177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235235" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG : GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTTGCCTG</gDNA_template>
            <first_frame> Q  M  *  M  V  T  P  R  C  G  K  L  *  Q  Q  N  T  I  Q  H  F  T  C  C  T  I  G  L  P  S  P  I  P  T  L  L  V  T  S  Y  A  Q  Q  L  E  K  M  T  *  Q  *  *  K  N  S  *  N  M  D  Y  K  L  T  R  R  T  A  M  D  Q  L  L  F  M  L  H  W  K  K  I  L  K  T  W  *  S  Y  F  *  *  M  E  L  R  *  T  I  S  *  S  T  S  F  L  Q  *  T  *  M  T  C  Y  K  S  A  K  *  D  T  E  L  W  Y  P  T  Q  W  M  K  L  L  K  N  G  A  N  K  R  S  N  T  I  Q  K  A  L  G  I  K  C  L  L  E  L  A  Y  T  E  A  I  L  L  S  G  E  E  L  I  A  V  N  L  A  N  *  L  R  F  Q  I  H  L  Q  S  S  R  S  L  Q  :  V  R  N  L  D  L  M  Q  Q  M  H  R  L  R  I  K  K  D  Q  K  L  T  Q  L  K  *  *  E  I  M  T  S  Y  L  *  L  K  V  Q  T  A  C  S  N  T  Y  *  *  H  L  K  V  S  V  K  M  H  I  S  L  K  N  S  E  E  K  C  I  V  D  I  H  F  F  P  I  C  V  A  Y  *  E  P  I  A  V  I  Y  T  Q  T  F  A   </first_frame>
            <second_frame>  R  C  K  W  S  H  R  V  V  G  S  Y  S  S  K  T  P  F  N  I  S  R  V  V  P  L  G  F  R  L  R  S  L  H  C  W  *  P  L  M  H  S  S  *  K  K  *  L  N  S  D  E  R  T  P  K  T  W  I  T  S  *  L  E  G  P  R  W  I  N  C  Y  S  C  C  T  G  R  K  S  *  R  H  G  K  A  T  S  N  E  W  S  *  D  K  R  *  V  K  V  Q  A  F  F  N  E  P  K  *  H  A  T  K  A  R  S  R  T  Q  N  Y  G  I  R  H  N  G  *  S  C  S  K  M  A  P  T  R  E  A  T  Q  F  R  K  H  *  G  S  N  V  F  *  S  *  H  I  Q  R  P  S  C  Y  Q  E  K  N  S  L  Q  *  T  W  Q  I  N  Y  A  S  K  F  T  C  R  A  Q  D  H  C  R :   S  E  I  W  I  *  C  N  K  C  I  D  Y  G  S  R  R  I  R  N  *  L  N  *  S  N  K  R  *  *  Q  A  I  Y  S  *  R  S  K  L  L  V  A  I  P  I  S  D  T  *  K  C  L  L  R  C  I  Y  H  *  R  T  Q  K  K  N  V  *  W  T  Y  I  S  F  L  F  V  W  H  I  E  N  L  L  Q  *  Y  I  L  K  L  L  P  </second_frame>
            <third_frame>   D  V  N  G  H  T  A  L  W  E  A  I  A  A  K  H  H  S  T  F  H  V  L  Y  H  W  A  S  V  S  D  P  Y  I  A  G  D  L  L  C  T  A  A  R  K  N  D  L  T  V  M  K  E  L  L  K  H  G  L  Q  V  D  S  K  D  R  D  G  S  T  A  I  H  V  A  L  E  E  N  L  E  D  M  V  K  L  L  L  M  N  G  A  E  I  N  D  K  L  K  Y  K  L  S  S  M  N  L  N  D  M  L  Q  K  R  E  V  G  H  R  I  M  V  S  D  T  M  D  E  V  A  Q  K  W  R  Q  Q  E  K  Q  H  N  S  E  S  T  R  D  Q  M  S  F  R  V  S  I  Y  R  G  H  P  V  I  R  R  R  T  H  C  S  E  P  G  K  L  I  T  L  P  N  S  L  A  E  L  K  I  I  A   : G  Q  K  F  G  F  D  A  T  N  A  S  I  T  D  Q  E  G  S  E  I  D  S  I  E  V  I  R  D  N  D  K  L  F  I  V  E  G  P  N  C  L  *  Q  Y  L  L  V  T  L  K  S  V  C  *  D  A  Y  I  T  K  E  L  R  R  K  M  Y  S  G  H  T  F  L  S  Y  L  C  G  I  L  R  T  Y  C  S  D  I  Y  S  N  F  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74169" stop="73605"/>
                    <exon start="73457" stop="73330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVNGHTALWEAIAAKHHSTFHVLYHWASVSDPYIAGDLLCTAARKNDLTVMKELLKHGLQVDSKDRDGSTAIHVALEENLEDMVKLLLMNGAEINDKLKYKLSSMNLNDMLQKREVGHRIMVSDTMDEVAQKWRQQEKQHNSESTRDQMSFRVSIYRGHPVIRRRTHCSEPGKLITLPNSLAELKIIAGQKFGFDATNASITDQEGSEIDSIEVIRDNDKLFIVEGPNCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75305" e_stop="75160"/>
            <exon e_start="75082" e_stop="74765"/>
            <exon e_start="74674" e_stop="74446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.332" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75305" e_stop="75160" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.332" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75159" i_stop="75083" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75082" e_stop="74765" e_length="318"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="74674" e_stop="74446" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75305" stop="75160"/>
              <exon start="75082" stop="74765"/>
              <exon start="74674" stop="74446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75277" stop="75160"/>
              <exon start="75082" stop="74765"/>
              <exon start="74674" stop="74658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGGCTGAGAGTCTAAACCAGCAGGAATTGATTGAACAGCTTCCCAAGACAATTTGCAAAAGCATAAGGCACCATTTGTTTTTACCAACAGTGGAGAAAGTTTATCTTTTTAAAGGTGTCACAAAGGAAATTCTGTTACTTTTG : GTTGCAGATATGAAGGCTGAGTACATACCTCCAAGAGAGGATGTAATAATGCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAG : CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGA</gDNA_template>
            <first_frame> S  G  L  R  V  *  T  S  R  N  *  L  N  S  F  P  R  Q  F  A  K  A  *  G  T  I  C  F  Y  Q  Q  W  R  K  F  I  F  L  K  V  S  Q  R  K  F  C  Y  F  W :   L  Q  I  *  R  L  S  T  Y  L  Q  E  R  M  *  *  C  R  T  N  H  Q  T  S  C  T  S  *  C  Q  G  R  W  K  *  L  N  L  K  W  R  M  S  Q  L  F  G  L  S  N  L  E  I  *  *  E  K  *  G  H  C  V  V  D  L  R  A  T  R  I  E  P  K  H  F  H  S  S  *  R  *  E  L  V  I  *  L  K  Q  *  K  P  D  K  K  I  I  S  S  *  S  R  T  S  F  S :   I  I  R  S  S  K  A  *  G  L  E  I  Y  F  M  E  W  G  E  I  M  V  I  Q  T  C  M  L  T  C  *  L  L  L  V  Q  V  M  L  L  S  L  K  N  F  S  R  L  N  *  I  L  I  S  E  T  L  K  E  E  L  H  W  Y  V  P  S  W  P  T  F  I  L  K  K  R </first_frame>
            <second_frame>  Q  G  *  E  S  K  P  A  G  I  D  *  T  A  S  Q  D  N  L  Q  K  H  K  A  P  F  V  F  T  N  S  G  E  S  L  S  F  *  R  C  H  K  G  N  S  V  T  F   : G  C  R  Y  E  G  *  V  H  T  S  K  R  G  C  N  N  A  E  R  I  T  R  R  V  V  H  H  S  V  R  G  G  G  N  D  *  I  *  N  G  E  *  A  N  C  L  D  F  Q  I  W  R  Y  D  R  R  S  R  G  I  V  L  *  T  S  E  L  H  V  S  N  Q  N  T  F  T  A  L  E  D  K  N  *  *  F  D  *  S  N  E  N  Q  T  R  R  *  Y  H  H  D  Q  E  L  P  S   : A  S  *  E  A  Q  R  L  K  A  W  R  F  T  S  W  S  G  G  R  L  W  *  S  K  H  V  C  *  L  A  N  C  C  *  Y  R  *  C  Y  F  P  *  R  T  S  Q  G  *  I  R  S  *  Y  R  R  R  S  R  K  N  S  T  G  T  S  P  R  G  L  R  L  Y  S  K  K   </second_frame>
            <third_frame>   R  A  E  S  L  N  Q  Q  E  L  I  E  Q  L  P  K  T  I  C  K  S  I  R  H  H  L  F  L  P  T  V  E  K  V  Y  L  F  K  G  V  T  K  E  I  L  L  L  L  :  V  A  D  M  K  A  E  Y  I  P  P  R  E  D  V  I  M  Q  N  E  S  P  D  E  L  Y  I  I  V  S  G  E  V  E  M  I  E  S  E  M  E  N  E  P  T  V  W  T  F  K  S  G  D  M  I  G  E  V  G  A  L  C  C  R  P  Q  S  Y  T  Y  R  T  K  T  L  S  Q  L  L  K  I  R  T  S  N  L  I  E  A  M  K  T  R  Q  E  D  N  I  I  M  I  K  N  F  L  Q  :  H  H  K  K  L  K  G  L  R  L  G  D  L  L  H  G  V  G  G  D  Y  G  D  P  N  M  Y  V  N  L  L  T  V  A  S  T  G  N  A  T  F  L  E  E  L  L  K  A  K  L  D  P  D  I  G  D  A  Q  G  R  T  P  L  V  R  P  L  V  A  Y  V  Y  T  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75303" stop="75160"/>
                    <exon start="75082" stop="74765"/>
                    <exon start="74674" stop="74447"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAESLNQQELIEQLPKTICKSIRHHLFLPTVEKVYLFKGVTKEILLLLVADMKAEYIPPREDVIMQNESPDELYIIVSGEVEMIESEMENEPTVWTFKSGDMIGEVGALCCRPQSYTYRTKTLSQLLKIRTSNLIEAMKTRQEDNIIMIKNFLQHHKKLKGLRLGDLLHGVGGDYGDPNMYVNLLTVASTGNATFLEELLKAKLDPDIGDAQGRTPLVRPLVAYVYTQKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="78648" PGL_stop="77423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78648" e_stop="78431"/>
            <exon e_start="77877" e_stop="77423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78648" e_stop="78431" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="78430" i_stop="77878" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="77877" e_stop="77423" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78648" stop="78431"/>
              <exon start="77877" stop="77423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78648" stop="78431"/>
              <exon start="77877" stop="77524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78648" stop="78431"/>
              <exon start="77877" stop="77577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACAAAAAACATGATTGTTGAAGATAGCAAGAAAGAGCAACATGTTGTACAAGATGATAATAGCCATGGGAGTAGCAATTCAGCTACTCCATCAGATGATCTTAGTTTTCGAAACTTATCGAAGCTCATTCTCCCTCCTCTTGGTTCCAATGATTCCAACACAAATCAAACTCACGAGAAAGGATTTATCATCACTCCTATGGATTCAAGATACAG : GTGTTGGGAGAGTTTAATGGTAATAATGGTGGCATATTCTGCATGGGTATGTCCATTTGAGATAGCATTCATGCACTCCAATCCAAACACAGCTTTATACATAACAGACAACGTTGTTGATATCTTCTTTGCTGCTGATATCTTCTTAACTTTCTTTGTTGCTTATATTGATGCTACAACTCAACTCCTTGTACGTGACAGGAGAAAAATTGCTATAAGGTACGTAACATAGACTCTCAATCTGATTTGATTTGATACAGAGATTAAGATATTAAATGATAATTTTCAATTTTATAATTCTAAATTAAAGTTATGTTAAATGTATTAAAATACCATTTAATCTTGCATAGCTTTAAACATGTTGAAAGTTAAAGTTAATATATTACAAAAAAAATTATCATTCTTTCTAACAAACTAAAAAAGAAAGTAGATCATTCTTTTTCAAATGAAAGGAG</gDNA_template>
            <first_frame> F  T  K  N  M  I  V  E  D  S  K  K  E  Q  H  V  V  Q  D  D  N  S  H  G  S  S  N  S  A  T  P  S  D  D  L  S  F  R  N  L  S  K  L  I  L  P  P  L  G  S  N  D  S  N  T  N  Q  T  H  E  K  G  F  I  I  T  P  M  D  S  R  Y  R :   C  W  E  S  L  M  V  I  M  V  A  Y  S  A  W  V  C  P  F  E  I  A  F  M  H  S  N  P  N  T  A  L  Y  I  T  D  N  V  V  D  I  F  F  A  A  D  I  F  L  T  F  F  V  A  Y  I  D  A  T  T  Q  L  L  V  R  D  R  R  K  I  A  I  R  Y  V  T  *  T  L  N  L  I  *  F  D  T  E  I  K  I  L  N  D  N  F  Q  F  Y  N  S  K  L  K  L  C  *  M  Y  *  N  T  I  *  S  C  I  A  L  N  M  L  K  V  K  V  N  I  L  Q  K  K  L  S  F  F  L  T  N  *  K  R  K  *  I  I  L  F  Q  M  K  G  </first_frame>
            <second_frame>  S  Q  K  T  *  L  L  K  I  A  R  K  S  N  M  L  Y  K  M  I  I  A  M  G  V  A  I  Q  L  L  H  Q  M  I  L  V  F  E  T  Y  R  S  S  F  S  L  L  L  V  P  M  I  P  T  Q  I  K  L  T  R  K  D  L  S  S  L  L  W  I  Q  D  T   : G  V  G  R  V  *  W  *  *  W  W  H  I  L  H  G  Y  V  H  L  R  *  H  S  C  T  P  I  Q  T  Q  L  Y  T  *  Q  T  T  L  L  I  S  S  L  L  L  I  S  S  *  L  S  L  L  L  I  L  M  L  Q  L  N  S  L  Y  V  T  G  E  K  L  L  *  G  T  *  H  R  L  S  I  *  F  D  L  I  Q  R  L  R  Y  *  M  I  I  F  N  F  I  I  L  N  *  S  Y  V  K  C  I  K  I  P  F  N  L  A  *  L  *  T  C  *  K  L  K  L  I  Y  Y  K  K  N  Y  H  S  F  *  Q  T  K  K  E  S  R  S  F  F  F  K  *  K  E </second_frame>
            <third_frame>   H  K  K  H  D  C  *  R  *  Q  E  R  A  T  C  C  T  R  *  *  *  P  W  E  *  Q  F  S  Y  S  I  R  *  S  *  F  S  K  L  I  E  A  H  S  P  S  S  W  F  Q  *  F  Q  H  K  S  N  S  R  E  R  I  Y  H  H  S  Y  G  F  K  I  Q  :  V  L  G  E  F  N  G  N  N  G  G  I  F  C  M  G  M  S  I  *  D  S  I  H  A  L  Q  S  K  H  S  F  I  H  N  R  Q  R  C  *  Y  L  L  C  C  *  Y  L  L  N  F  L  C  C  L  Y  *  C  Y  N  S  T  P  C  T  *  Q  E  K  N  C  Y  K  V  R  N  I  D  S  Q  S  D  L  I  *  Y  R  D  *  D  I  K  *  *  F  S  I  L  *  F  *  I  K  V  M  L  N  V  L  K  Y  H  L  I  L  H  S  F  K  H  V  E  S  *  S  *  Y  I  T  K  K  I  I  I  L  S  N  K  L  K  K  K  V  D  H  S  F  S  N  E  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78648" stop="78431"/>
                    <exon start="77877" stop="77646"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTKNMIVEDSKKEQHVVQDDNSHGSSNSATPSDDLSFRNLSKLILPPLGSNDSNTNQTHEKGFIITPMDSRYRCWESLMVIMVAYSAWVCPFEIAFMHSNPNTALYITDNVVDIFFAADIFLTFFVAYIDATTQLLVRDRRKIAIRYVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="87246" PGL_stop="81612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87246" e_stop="87134"/>
            <exon e_start="85967" e_stop="85911"/>
            <exon e_start="85803" e_stop="85673"/>
            <exon e_start="85588" e_stop="85500"/>
            <exon e_start="85319" e_stop="84967"/>
            <exon e_start="84847" e_stop="84752"/>
            <exon e_start="84647" e_stop="84583"/>
            <exon e_start="84239" e_stop="84137"/>
            <exon e_start="84038" e_stop="83880"/>
            <exon e_start="83746" e_stop="83606"/>
            <exon e_start="83507" e_stop="83464"/>
            <exon e_start="83370" e_stop="83256"/>
            <exon e_start="82552" e_stop="82400"/>
            <exon e_start="82285" e_stop="81612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.577" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="0.981"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.259" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87246" e_stop="87134" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.856">
            <gDNA_intron_boundary i_start="87133" i_stop="85968" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85967" e_stop="85911" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.896" acc_prob="0.979">
            <gDNA_intron_boundary i_start="85910" i_stop="85804" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85803" e_stop="85673" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85588" e_stop="85500" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85319" e_stop="84967" e_length="353"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.940">
            <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="84847" e_stop="84752" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84751" i_stop="84648" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="84647" e_stop="84583" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.577">
            <gDNA_intron_boundary i_start="84582" i_stop="84240" i_length="343"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="84239" e_stop="84137" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="84136" i_stop="84039" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="84038" e_stop="83880" e_length="159"/>
          </exon>
          <intron i_serial="9" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83879" i_stop="83747" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83746" e_stop="83606" e_length="141"/>
          </exon>
          <intron i_serial="10" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83605" i_stop="83508" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="83507" e_stop="83464" e_length="44"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="83370" e_stop="83256" e_length="115"/>
          </exon>
          <intron i_serial="12" don_prob="0.941" acc_prob="0.987">
            <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="82552" e_stop="82400" e_length="153"/>
          </exon>
          <intron i_serial="13" don_prob="0.259" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114"/>
          </intron>
          <exon e_serial="14" e_score="0.999">
            <gDNA_exon_boundary e_start="82285" e_stop="81612" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87246" stop="87134"/>
              <exon start="85967" stop="85911"/>
              <exon start="85803" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85757" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="84967"/>
              <exon start="84847" stop="84752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85756" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="84996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84982" stop="84967"/>
              <exon start="84847" stop="84752"/>
              <exon start="84647" stop="84583"/>
              <exon start="84239" stop="84137"/>
              <exon start="84038" stop="83880"/>
              <exon start="83746" stop="83606"/>
              <exon start="83507" stop="83464"/>
              <exon start="83370" stop="83323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83623" stop="83606"/>
              <exon start="83507" stop="83464"/>
              <exon start="83370" stop="83256"/>
              <exon start="82552" stop="82400"/>
              <exon start="82285" stop="81763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83482" stop="83464"/>
              <exon start="83370" stop="83256"/>
              <exon start="82552" stop="82400"/>
              <exon start="82285" stop="81998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83482" stop="83464"/>
              <exon start="83370" stop="83256"/>
              <exon start="82552" stop="82400"/>
              <exon start="82285" stop="82035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83481" stop="83464"/>
              <exon start="83370" stop="83256"/>
              <exon start="82552" stop="82400"/>
              <exon start="82285" stop="82034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83357" stop="83256"/>
              <exon start="82552" stop="82400"/>
              <exon start="82285" stop="81850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82415" stop="82400"/>
              <exon start="82285" stop="81612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82210" stop="81656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82188" stop="81736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTGATGCTGTCATTGACCCCTTGAGCTCATCTGGTCAAAAGTTGTCTTCTCTTCTTCGGCTTGTGTCAAAGTCCGTTCGGCCAAGCATGAGGCTTGTACTCAACCCCATG : AGTTCACTGGTTGATCTTCCATTGAAGAACTACTACAGATATGTTATACCAACACTG : GATGACTTTAGTAGTACAGATTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGT : CCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAG : GTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATGAAGATAGCCATTCACAAGAGAAGAAAAAG : GGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG : GAGCAGGTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTT : ATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAG : GATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAG : GTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTGTGATAACAACAGGGAGATGGATGGCTATCGTTTTTGGAAACAA : GGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAG : TGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG : GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG : GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATTACTACATCCCTCCCCAACCTATGTCAGTGGGAATCAACACGTACAGTCAATTTGAACAAA</gDNA_template>
            <first_frame> I  L  M  L  S  L  T  P  *  A  H  L  V  K  S  C  L  L  F  F  G  L  C  Q  S  P  F  G  Q  A  *  G  L  Y  S  T  P  * :   V  H  W  L  I  F  H  *  R  T  T  T  D  M  L  Y  Q  H  W :   M  T  L  V  V  Q  I  T  P  F  M  V  P  K  R  F  L  L  I  C  H  L  L  R  R  *  L  *  I  L  M  F  L  S  H  G  S  L  S  L  *  L  L   : S  M  T  *  I  I  C  C  L  K  T  W  E  R  L  G  H  S  K  Q  C  M  N  L  K  H  *  S  *  Q  :  V  I  A  L  R  R  I  R  S  L  L  E  D  F  S  *  S  *  A  L  K  V  H  L  T  W  L  T  H  L  S  W  P  I  W  V  T  G  K  *  K  R  F  L  E  F  G  T  C  S  L  L  L  V  E  A  Q  S  F  M  L  *  K  M  M  V  M  V  V  R  R  Q  L  C  Q  N  G  S  L  *  M  I  C  V  V  N  L  F  T  W  K  *  L  R  K  R  A  R  N  M  K  N  C  W  F  Q  L  M  K  I  A  I  H  K  R  R  K  R :   E  T  R  T  V  G  I  L  I  F  L  N  G  L  L  D  L  L  V  A  V  T  N  Q  R  R  V  K  T  L  Q  W :   S  R  *  P  V  V  V  M  G  R  R  L  T  Y  S  L  L  L  L  D  T   : Y  M  N  A  S  *  K  L  *  Y  *  V  F  *  R  I  L  N  G  Q  *  S  S  G  S  *  K  T  I  C  L  L  S  S  R :   M  *  S  L  I  W  L  E  N  M  V  L  N  M  N  *  L  P  T  N  G  L  H  G  C  T  N  K  R  R  S  K  E  S  F  G  H  I  K  F  Y  F  L  M  S  F  S  P  W  H  W  R  R :   L  S  S  *  T  Q  T  K  L  *  E  L  T  W  E  N  F  M  T  W  I  *  K  D  G  H  L  H  T  H  L  S  V  I  T  T  G  R  W  M  A  I  V  F  G  N  K :   A  S  G  K  S  I  Y  E  E  D  H  I  I  L   : V  L  Y  M  L  S  I  C  L  N  S  G  R  L  L  L  E  I  I  Y  E  C  F  M  R  H  *  A  R  I  Q  T  V  F  Q  I  W  I  R :   I  S  Q  T  M  L  S  I  L  Y  P  S  F  H  S  H  K  N  G  F  G  V  S  H  G  V  V  M  Q  Q  S  P  R  Q  K  Q  *  T  S  A  I  I  P  *  Q  K  N  P  S  F  R :   A  P  R  G  L  W  Q  S  G  Q  N  L  T  M  K  L  D  A  L  L  Q  R  S  W  V  K  T  L  I  P  K  T  R  Q  H  L  L  L  K  H  K  K  P  S  A  I  L  H  *  K  M  R  N  P  S  Q  N  C  E  F  D  A  R  Q  V  F  L  V  L  R  H  P  F  L  S  D  T  F  T  L  W  C  I  S  A  A  I  V  K  R  L  R  T  V  S  V  E  I  V  N  *  G  R  D  L  E  K  L  I  S  *  G  G  L  K  C  T  F  T  Y  Q  F  C  N  L  I  C  P  *  L  L  V  E  R  Q  T  *  H  L  I  W  I  D  S  C  R  R  F  L  V  I  Y  H  T  Y  Y  V  L  L  S  T  D  W  A  V  R  K  Q  L  S  R  S  F  I  V  E  S  W  N  I  L  H  F  *  Y  V  T  L  R  S  H  L  H  S  S  N  F  *  R  F  E  Q  L  N  Y  Y  I  P  P  Q  P  M  S  V  G  I  N  T  Y  S  Q  F  E  Q  </first_frame>
            <second_frame>  Y  *  C  C  H  *  P  L  E  L  I  W  S  K  V  V  F  S  S  S  A  C  V  K  V  R  S  A  K  H  E  A  C  T  Q  P  H   : E  F  T  G  *  S  S  I  E  E  L  L  Q  I  C  Y  T  N  T   : G  *  L  *  *  Y  R  L  H  H  L  W  S  Q  S  V  F  C  *  Y  A  T  F  *  D  A  N  Y  E  S  *  C  S  *  A  M  A  R  *  A  C  S  C  C  :  P  *  P  R  *  Y  V  A  *  K  P  G  R  D  *  D  T  P  S  S  V  *  T  *  S  T  S  P  D  R :   S  L  L  *  E  G  S  G  A  S  *  R  T  S  A  N  P  R  H  *  K  Y  T  S  L  G  *  H  T  C  H  G  Q  F  G  L  L  A  N  E  S  V  S  W  S  L  V  P  A  A  C  S  W  S  K  L  R  A  L  C  F  E  R  *  W  *  W  W  S  G  D  N  F  V  K  T  D  H  Y  R  *  F  A  W  *  T  C  S  H  G  S  D  *  E  K  G  Q  G  T  *  K  T  V  G  F  S  *  *  R  *  P  F  T  R  E  E  K   : G  K  P  E  Q  L  E  F  *  Y  S  *  M  G  F  W  I  Y  W  W  Q  *  P  I  K  E  E  *  K  H  S  S   : G  A  G  N  R  W  S  S  W  E  D  D  *  H  I  L  C  C  F  W  T  L  :  I  *  T  L  P  K  N  Y  D  T  K  C  S  K  E  Y  S  T  A  S  E  V  L  V  H  K  K  L  F  V  S  S  V  Q   : G  C  N  P  S  Y  G  S  R  I  W  F  *  I  *  T  N  Y  L  Q  M  A  Y  M  V  A  Q  T  K  G  E  A  K  N  H  L  G  I  *  N  S  I  S  *  C  H  F  P  P  G  T  G  E   : G  Y  L  R  R  R  R  P  N  C  K  N  *  H  G  R  T  L  *  H  G  F  E  R  T  A  T  C  I  H  T  F  L  *  *  Q  Q  G  D  G  W  L  S  F  L  E  T   : R  L  L  E  R  A  F  T  R  K  T  I  S  Y  *  :  C  S  I  C  C  R  S  A  *  I  P  G  D  C  C  W  R  *  F  T  S  V  L  *  D  T  E  Q  G  S  K  Q  S  F  K  S  G  S   : G  S  P  K  L  C  S  A  Y  C  T  H  L  F  T  P  T  R  M  A  L  V  *  V  M  V  W  *  C  N  K  A  Q  G  K  N  N  R  P  L  Q  *  S  H  D  K  R  T  Q  A  S   : G  R  Q  E  D  C  G  R  V  A  R  T  *  L  *  S  *  T  R  Y  C  K  D  L  G  *  R  L  *  S  P  R  P  G  S  T  S  C  *  N  T  K  N  H  Q  R  Y  S  I  R  R  *  G  I  Q  V  R  T  V  N  L  M  L  G  K  Y  S  W  C  L  D  T  P  S  Y  R  I  H  S  L  C  G  A  S  Q  L  P  L  *  K  G  *  E  Q  C  L  L  R  L  S  I  E  A  E  T  *  K  N  *  L  A  K  A  A  L  N  A  R  L  R  T  N  F  A  I  *  S  A  L  S  C  *  *  R  G  R  L  D  I  S  Y  G  *  I  A  A  E  D  S  W  *  Y  I  I  L  T  M  C  Y  S  P  Q  I  G  Q  L  G  N  N  F  Q  D  L  L  L  L  K  V  G  T  F  C  I  F  D  M  *  H  *  G  L  T  Y  I  P  V  T  F  K  G  L  S  S  *  I  T  T  S  L  P  N  L  C  Q  W  E  S  T  R  T  V  N  L  N  K </second_frame>
            <third_frame>   I  D  A  V  I  D  P  L  S  S  S  G  Q  K  L  S  S  L  L  R  L  V  S  K  S  V  R  P  S  M  R  L  V  L  N  P  M  :  S  S  L  V  D  L  P  L  K  N  Y  Y  R  Y  V  I  P  T  L  :  D  D  F  S  S  T  D  Y  T  I  Y  G  P  K  A  F  F  A  N  M  P  P  S  K  T  L  T  M  N  L  D  V  P  E  P  W  L  V  E  P  V  V  A  V :   H  D  L  D  N  M  L  L  E  N  L  G  E  T  R  T  L  Q  A  V  Y  E  L  E  A  L  V  L  T   : G  H  C  S  E  K  D  Q  E  P  P  R  G  L  Q  L  I  L  G  T  K  S  T  P  H  L  V  D  T  L  V  M  A  N  L  G  Y  W  Q  M  K  A  F  P  G  V  W  Y  L  Q  L  A  P  G  R  S  S  E  L  Y  A  L  K  D  D  G  D  G  G  Q  E  T  T  L  S  K  R  I  I  I  D  D  L  R  G  K  L  V  H  M  E  V  I  K  K  K  G  K  E  H  E  K  L  L  V  S  A  D  E  D  S  H  S  Q  E  K  K  K  :  G  N  Q  N  S  W  N  S  N  I  L  K  W  A  S  G  F  I  G  G  S  D  Q  S  K  K  S  K  N  T  P  V  :  E  Q  V  T  G  G  R  H  G  K  T  I  N  I  F  S  V  A  S  G  H  L :   Y  E  R  F  L  K  I  M  I  L  S  V  L  K  N  T  Q  R  P  V  K  F  W  F  I  K  N  Y  L  S  P  Q  F  K  :  D  V  I  P  H  M  A  R  E  Y  G  F  E  Y  E  L  I  T  Y  K  W  P  T  W  L  H  K  Q  K  E  K  Q  R  I  I  W  A  Y  K  I  L  F  L  D  V  I  F  P  L  A  L  E  K  :  V  I  F  V  D  A  D  Q  I  V  R  T  D  M  G  E  L  Y  D  M  D  L  K  G  R  P  L  A  Y  T  P  F  C  D  N  N  R  E  M  D  G  Y  R  F  W  K  Q  :  G  F  W  K  E  H  L  R  G  R  P  Y  H  I  S :   A  L  Y  V  V  D  L  L  K  F  R  E  T  A  A  G  D  N  L  R  V  F  Y  E  T  L  S  K  D  P  N  S  L  S  N  L  D  Q  :  D  L  P  N  Y  A  Q  H  T  V  P  I  F  S  L  P  Q  E  W  L  W  C  E  S  W  C  G  N  A  T  K  P  K  A  K  T  I  D  L  C  N  N  P  M  T  K  E  P  K  L  Q  :  G  A  K  R  I  V  A  E  W  P  E  L  D  Y  E  A  R  R  V  T  A  K  I  L  G  E  D  F  D  P  Q  D  Q  A  A  P  P  A  E  T  Q  K  T  I  S  D  T  P  L  E  D  E  E  S  K  S  E  L  *  I  *  C  *  A  S  I  P  G  A  *  T  P  L  L  I  G  Y  I  H  F  V  V  H  L  S  C  H  C  K  K  A  K  N  S  V  C  *  D  C  Q  L  R  Q  R  L  R  K  I  D  *  L  R  R  P  *  M  H  V  Y  V  P  I  L  Q  F  D  L  P  L  V  V  S  R  E  A  D  L  T  S  H  M  D  R  *  L  Q  K  I  L  G  N  I  S  Y  L  L  C  A  T  L  H  R  L  G  S  *  E  T  T  F  K  I  F  Y  C  *  K  L  E  H  S  A  F  L  I  C  N  I  E  V  S  P  T  F  Q  *  L  L  K  V  *  A  V  K  L  L  H  P  S  P  T  Y  V  S  G  N  Q  H  V  Q  S  I  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87244" stop="87134"/>
                    <exon start="85967" stop="85911"/>
                    <exon start="85803" stop="85673"/>
                    <exon start="85588" stop="85500"/>
                    <exon start="85319" stop="84967"/>
                    <exon start="84847" stop="84752"/>
                    <exon start="84647" stop="84583"/>
                    <exon start="84239" stop="84137"/>
                    <exon start="84038" stop="83880"/>
                    <exon start="83746" stop="83606"/>
                    <exon start="83507" stop="83464"/>
                    <exon start="83370" stop="83256"/>
                    <exon start="82552" stop="82400"/>
                    <exon start="82285" stop="82109"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1791</number_coding_nucleotides>
                  <number_encoded_amino_acids>597</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDAVIDPLSSSGQKLSSLLRLVSKSVRPSMRLVLNPMSSLVDLPLKNYYRYVIPTLDDFSSTDYTIYGPKAFFANMPPSKTLTMNLDVPEPWLVEPVVAVHDLDNMLLENLGETRTLQAVYELEALVLTGHCSEKDQEPPRGLQLILGTKSTPHLVDTLVMANLGYWQMKAFPGVWYLQLAPGRSSELYALKDDGDGGQETTLSKRIIIDDLRGKLVHMEVIKKKGKEHEKLLVSADEDSHSQEKKKGNQNSWNSNILKWASGFIGGSDQSKKSKNTPVEQVTGGRHGKTINIFSVASGHLYERFLKIMILSVLKNTQRPVKFWFIKNYLSPQFKDVIPHMAREYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGRPLAYTPFCDNNREMDGYRFWKQGFWKEHLRGRPYHISALYVVDLLKFRETAAGDNLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKPKAKTIDLCNNPMTKEPKLQGAKRIVAEWPELDYEARRVTAKILGEDFDPQDQAAPPAETQKTISDTPLEDEESKSEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87246" e_stop="87134"/>
            <exon e_start="85967" e_stop="85911"/>
            <exon e_start="85803" e_stop="85673"/>
            <exon e_start="85588" e_stop="85500"/>
            <exon e_start="85319" e_stop="84967"/>
            <exon e_start="84847" e_stop="84752"/>
            <exon e_start="84641" e_stop="84583"/>
            <exon e_start="84239" e_stop="84137"/>
            <exon e_start="84038" e_stop="83880"/>
            <exon e_start="83746" e_stop="83649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.577" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87246" e_stop="87134" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.856">
            <gDNA_intron_boundary i_start="87133" i_stop="85968" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85967" e_stop="85911" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.896" acc_prob="0.979">
            <gDNA_intron_boundary i_start="85910" i_stop="85804" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85803" e_stop="85673" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85588" e_stop="85500" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85319" e_stop="84967" e_length="353"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.940">
            <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="84847" e_stop="84752" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84751" i_stop="84642" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="84641" e_stop="84583" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.577">
            <gDNA_intron_boundary i_start="84582" i_stop="84240" i_length="343"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84239" e_stop="84137" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="84136" i_stop="84039" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="84038" e_stop="83880" e_length="159"/>
          </exon>
          <intron i_serial="9" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83879" i_stop="83747" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83746" e_stop="83649" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87246" stop="87134"/>
              <exon start="85967" stop="85911"/>
              <exon start="85803" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="85050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85757" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="84967"/>
              <exon start="84847" stop="84752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85756" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="84996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84995" stop="84967"/>
              <exon start="84847" stop="84752"/>
              <exon start="84641" stop="84583"/>
              <exon start="84239" stop="84137"/>
              <exon start="84038" stop="83880"/>
              <exon start="83746" stop="83649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTGATGCTGTCATTGACCCCTTGAGCTCATCTGGTCAAAAGTTGTCTTCTCTTCTTCGGCTTGTGTCAAAGTCCGTTCGGCCAAGCATGAGGCTTGTACTCAACCCCATG : AGTTCACTGGTTGATCTTCCATTGAAGAACTACTACAGATATGTTATACCAACACTG : GATGACTTTAGTAGTACAGATTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGT : CCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAG : GTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATGAAGATAGCCATTCACAAGAGAAGAAAAAG : GGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG : GTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTT : ATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAG : GATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAG : GTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTG</gDNA_template>
            <first_frame> I  L  M  L  S  L  T  P  *  A  H  L  V  K  S  C  L  L  F  F  G  L  C  Q  S  P  F  G  Q  A  *  G  L  Y  S  T  P  * :   V  H  W  L  I  F  H  *  R  T  T  T  D  M  L  Y  Q  H  W :   M  T  L  V  V  Q  I  T  P  F  M  V  P  K  R  F  L  L  I  C  H  L  L  R  R  *  L  *  I  L  M  F  L  S  H  G  S  L  S  L  *  L  L   : S  M  T  *  I  I  C  C  L  K  T  W  E  R  L  G  H  S  K  Q  C  M  N  L  K  H  *  S  *  Q  :  V  I  A  L  R  R  I  R  S  L  L  E  D  F  S  *  S  *  A  L  K  V  H  L  T  W  L  T  H  L  S  W  P  I  W  V  T  G  K  *  K  R  F  L  E  F  G  T  C  S  L  L  L  V  E  A  Q  S  F  M  L  *  K  M  M  V  M  V  V  R  R  Q  L  C  Q  N  G  S  L  *  M  I  C  V  V  N  L  F  T  W  K  *  L  R  K  R  A  R  N  M  K  N  C  W  F  Q  L  M  K  I  A  I  H  K  R  R  K  R :   E  T  R  T  V  G  I  L  I  F  L  N  G  L  L  D  L  L  V  A  V  T  N  Q  R  R  V  K  T  L  Q  W :   *  P  V  V  V  M  G  R  R  L  T  Y  S  L  L  L  L  D  T   : Y  M  N  A  S  *  K  L  *  Y  *  V  F  *  R  I  L  N  G  Q  *  S  S  G  S  *  K  T  I  C  L  L  S  S  R :   M  *  S  L  I  W  L  E  N  M  V  L  N  M  N  *  L  P  T  N  G  L  H  G  C  T  N  K  R  R  S  K  E  S  F  G  H  I  K  F  Y  F  L  M  S  F  S  P  W  H  W  R  R :   L  S  S  *  T  Q  T  K  L  *  E  L  T  W  E  N  F  M  T  W  I  *  K  D  G  H  L  H  T  H  L  S  </first_frame>
            <second_frame>  Y  *  C  C  H  *  P  L  E  L  I  W  S  K  V  V  F  S  S  S  A  C  V  K  V  R  S  A  K  H  E  A  C  T  Q  P  H   : E  F  T  G  *  S  S  I  E  E  L  L  Q  I  C  Y  T  N  T   : G  *  L  *  *  Y  R  L  H  H  L  W  S  Q  S  V  F  C  *  Y  A  T  F  *  D  A  N  Y  E  S  *  C  S  *  A  M  A  R  *  A  C  S  C  C  :  P  *  P  R  *  Y  V  A  *  K  P  G  R  D  *  D  T  P  S  S  V  *  T  *  S  T  S  P  D  R :   S  L  L  *  E  G  S  G  A  S  *  R  T  S  A  N  P  R  H  *  K  Y  T  S  L  G  *  H  T  C  H  G  Q  F  G  L  L  A  N  E  S  V  S  W  S  L  V  P  A  A  C  S  W  S  K  L  R  A  L  C  F  E  R  *  W  *  W  W  S  G  D  N  F  V  K  T  D  H  Y  R  *  F  A  W  *  T  C  S  H  G  S  D  *  E  K  G  Q  G  T  *  K  T  V  G  F  S  *  *  R  *  P  F  T  R  E  E  K   : G  K  P  E  Q  L  E  F  *  Y  S  *  M  G  F  W  I  Y  W  W  Q  *  P  I  K  E  E  *  K  H  S  S   : G  N  R  W  S  S  W  E  D  D  *  H  I  L  C  C  F  W  T  L  :  I  *  T  L  P  K  N  Y  D  T  K  C  S  K  E  Y  S  T  A  S  E  V  L  V  H  K  K  L  F  V  S  S  V  Q   : G  C  N  P  S  Y  G  S  R  I  W  F  *  I  *  T  N  Y  L  Q  M  A  Y  M  V  A  Q  T  K  G  E  A  K  N  H  L  G  I  *  N  S  I  S  *  C  H  F  P  P  G  T  G  E   : G  Y  L  R  R  R  R  P  N  C  K  N  *  H  G  R  T  L  *  H  G  F  E  R  T  A  T  C  I  H  T  F  L </second_frame>
            <third_frame>   I  D  A  V  I  D  P  L  S  S  S  G  Q  K  L  S  S  L  L  R  L  V  S  K  S  V  R  P  S  M  R  L  V  L  N  P  M  :  S  S  L  V  D  L  P  L  K  N  Y  Y  R  Y  V  I  P  T  L  :  D  D  F  S  S  T  D  Y  T  I  Y  G  P  K  A  F  F  A  N  M  P  P  S  K  T  L  T  M  N  L  D  V  P  E  P  W  L  V  E  P  V  V  A  V :   H  D  L  D  N  M  L  L  E  N  L  G  E  T  R  T  L  Q  A  V  Y  E  L  E  A  L  V  L  T   : G  H  C  S  E  K  D  Q  E  P  P  R  G  L  Q  L  I  L  G  T  K  S  T  P  H  L  V  D  T  L  V  M  A  N  L  G  Y  W  Q  M  K  A  F  P  G  V  W  Y  L  Q  L  A  P  G  R  S  S  E  L  Y  A  L  K  D  D  G  D  G  G  Q  E  T  T  L  S  K  R  I  I  I  D  D  L  R  G  K  L  V  H  M  E  V  I  K  K  K  G  K  E  H  E  K  L  L  V  S  A  D  E  D  S  H  S  Q  E  K  K  K  :  G  N  Q  N  S  W  N  S  N  I  L  K  W  A  S  G  F  I  G  G  S  D  Q  S  K  K  S  K  N  T  P  V  :  V  T  G  G  R  H  G  K  T  I  N  I  F  S  V  A  S  G  H  L :   Y  E  R  F  L  K  I  M  I  L  S  V  L  K  N  T  Q  R  P  V  K  F  W  F  I  K  N  Y  L  S  P  Q  F  K  :  D  V  I  P  H  M  A  R  E  Y  G  F  E  Y  E  L  I  T  Y  K  W  P  T  W  L  H  K  Q  K  E  K  Q  R  I  I  W  A  Y  K  I  L  F  L  D  V  I  F  P  L  A  L  E  K  :  V  I  F  V  D  A  D  Q  I  V  R  T  D  M  G  E  L  Y  D  M  D  L  K  G  R  P  L  A  Y  T  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87244" stop="87134"/>
                    <exon start="85967" stop="85911"/>
                    <exon start="85803" stop="85673"/>
                    <exon start="85588" stop="85500"/>
                    <exon start="85319" stop="84967"/>
                    <exon start="84847" stop="84752"/>
                    <exon start="84641" stop="84583"/>
                    <exon start="84239" stop="84137"/>
                    <exon start="84038" stop="83880"/>
                    <exon start="83746" stop="83651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDAVIDPLSSSGQKLSSLLRLVSKSVRPSMRLVLNPMSSLVDLPLKNYYRYVIPTLDDFSSTDYTIYGPKAFFANMPPSKTLTMNLDVPEPWLVEPVVAVHDLDNMLLENLGETRTLQAVYELEALVLTGHCSEKDQEPPRGLQLILGTKSTPHLVDTLVMANLGYWQMKAFPGVWYLQLAPGRSSELYALKDDGDGGQETTLSKRIIIDDLRGKLVHMEVIKKKGKEHEKLLVSADEDSHSQEKKKGNQNSWNSNILKWASGFIGGSDQSKKSKNTPVVTGGRHGKTINIFSVASGHLYERFLKIMILSVLKNTQRPVKFWFIKNYLSPQFKDVIPHMAREYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGRPLAYTPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="109404" PGL_stop="108304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109404" e_stop="108304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="109404" e_stop="108304" e_length="1101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109404" stop="108880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109403" stop="108881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108947" stop="108304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTTTATAAAGGAACTTTAGCAGATGGGACTAATGTTGCTGTCAAAAAGATTATAGAATCTGATTTTCAAGGAAATGATGAGTTTTGCAATGAGGTTGAGATTATTAGTAACTTGAAGCATCGTAATCTTGTATCACTTAGGGGTTGTTGCGTGACAGATAAAAATCGGATTGAAAATGGGGAGAGTGAAAGATTCCTCGTGTATGATTACATGCCCAATGGGAATCTTGAGGATCATTTATTTGCTGTAAATCAAGGTGGAATACTGAAGCAGCCGTTGACTTGGCCTCAGAGAAAAAACATAATTTTGGATGTGGCAAAAGGACTAGCTTATCTGCATTATGGGGTAAAGCCAGCAATTTATCACAGGGACATTAAAGCTACTAATATCCTATTAGATGAAGATATGAGAGCAAGAGTTGCTGACTTTGGGTTGGTAAAGCAAAGTAGAGAAGGACAGTCTCATCTTACCACCAGAGTGGCAGGAACACATGGCTACTTAGCTCCTGAATATGCTCTCTATGGGCAATTGACTGAGAAGAGCGATGTTTATAGTTTTGGGGTTGTTGTTTTGGAAATAATGTGTGGAAGGAAGGTCCTTGATTTCTCTTCTGGATCGCCTCGTTCTTTTCTGATCACGGATTGGGCTTGGTCGAAGGTAAAAGCTGGAAAGATGAATGAAGTTTTGGATGCCATCCTAGTAAAGACTGAGGATTCCGTAAGTGCAAATCCAAGGGCTATAATGGTGAGATTTCTCCTTGTTGGAATATTATGTGCTCACGTGATGGTGGCCTTAAGGCCAACTATATTGGATGCACTAAAAATGTTAGAAGGAGATATTGAGGTTCCTGAAATTCCAGACAGACCAGCACCTCTTGGACACCCTTCATTTTATAATGCTAGTGGTAACACATTCAGCATATCACCAGCCTTGAGTTGCTTGCAAATGCCTGCTGGAGACATGCTCAGGTGACAATATGAAGTATTCTCATATGACATACTTTTCTTGCTTATTGAGATTAGGAGAAAGCTAATGAAATTTCTGCTAGAGTTGAACCTGGGAACCGAGTGCCTAGAGATTTTTTTGATCAAATAATATT</gDNA_template>
            <first_frame> *  F  I  K  E  L  *  Q  M  G  L  M  L  L  S  K  R  L  *  N  L  I  F  K  E  M  M  S  F  A  M  R  L  R  L  L  V  T  *  S  I  V  I  L  Y  H  L  G  V  V  A  *  Q  I  K  I  G  L  K  M  G  R  V  K  D  S  S  C  M  I  T  C  P  M  G  I  L  R  I  I  Y  L  L  *  I  K  V  E  Y  *  S  S  R  *  L  G  L  R  E  K  T  *  F  W  M  W  Q  K  D  *  L  I  C  I  M  G  *  S  Q  Q  F  I  T  G  T  L  K  L  L  I  S  Y  *  M  K  I  *  E  Q  E  L  L  T  L  G  W  *  S  K  V  E  K  D  S  L  I  L  P  P  E  W  Q  E  H  M  A  T  *  L  L  N  M  L  S  M  G  N  *  L  R  R  A  M  F  I  V  L  G  L  L  F  W  K  *  C  V  E  G  R  S  L  I  S  L  L  D  R  L  V  L  F  *  S  R  I  G  L  G  R  R  *  K  L  E  R  *  M  K  F  W  M  P  S  *  *  R  L  R  I  P  *  V  Q  I  Q  G  L  *  W  *  D  F  S  L  L  E  Y  Y  V  L  T  *  W  W  P  *  G  Q  L  Y  W  M  H  *  K  C  *  K  E  I  L  R  F  L  K  F  Q  T  D  Q  H  L  L  D  T  L  H  F  I  M  L  V  V  T  H  S  A  Y  H  Q  P  *  V  A  C  K  C  L  L  E  T  C  S  G  D  N  M  K  Y  S  H  M  T  Y  F  S  C  L  L  R  L  G  E  S  *  *  N  F  C  *  S  *  T  W  E  P  S  A  *  R  F  F  *  S  N  N  I </first_frame>
            <second_frame>  S  L  *  R  N  F  S  R  W  D  *  C  C  C  Q  K  D  Y  R  I  *  F  S  R  K  *  *  V  L  Q  *  G  *  D  Y  *  *  L  E  A  S  *  S  C  I  T  *  G  L  L  R  D  R  *  K  S  D  *  K  W  G  E  *  K  I  P  R  V  *  L  H  A  Q  W  E  S  *  G  S  F  I  C  C  K  S  R  W  N  T  E  A  A  V  D  L  A  S  E  K  K  H  N  F  G  C  G  K  R  T  S  L  S  A  L  W  G  K  A  S  N  L  S  Q  G  H  *  S  Y  *  Y  P  I  R  *  R  Y  E  S  K  S  C  *  L  W  V  G  K  A  K  *  R  R  T  V  S  S  Y  H  Q  S  G  R  N  T  W  L  L  S  S  *  I  C  S  L  W  A  I  D  *  E  E  R  C  L  *  F  W  G  C  C  F  G  N  N  V  W  K  E  G  P  *  F  L  F  W  I  A  S  F  F  S  D  H  G  L  G  L  V  E  G  K  S  W  K  D  E  *  S  F  G  C  H  P  S  K  D  *  G  F  R  K  C  K  S  K  G  Y  N  G  E  I  S  P  C  W  N  I  M  C  S  R  D  G  G  L  K  A  N  Y  I  G  C  T  K  N  V  R  R  R  Y  *  G  S  *  N  S  R  Q  T  S  T  S  W  T  P  F  I  L  *  C  *  W  *  H  I  Q  H  I  T  S  L  E  L  L  A  N  A  C  W  R  H  A  Q  V  T  I  *  S  I  L  I  *  H  T  F  L  A  Y  *  D  *  E  K  A  N  E  I  S  A  R  V  E  P  G  N  R  V  P  R  D  F  F  D  Q  I  I   </second_frame>
            <third_frame>   V  Y  K  G  T  L  A  D  G  T  N  V  A  V  K  K  I  I  E  S  D  F  Q  G  N  D  E  F  C  N  E  V  E  I  I  S  N  L  K  H  R  N  L  V  S  L  R  G  C  C  V  T  D  K  N  R  I  E  N  G  E  S  E  R  F  L  V  Y  D  Y  M  P  N  G  N  L  E  D  H  L  F  A  V  N  Q  G  G  I  L  K  Q  P  L  T  W  P  Q  R  K  N  I  I  L  D  V  A  K  G  L  A  Y  L  H  Y  G  V  K  P  A  I  Y  H  R  D  I  K  A  T  N  I  L  L  D  E  D  M  R  A  R  V  A  D  F  G  L  V  K  Q  S  R  E  G  Q  S  H  L  T  T  R  V  A  G  T  H  G  Y  L  A  P  E  Y  A  L  Y  G  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  V  L  E  I  M  C  G  R  K  V  L  D  F  S  S  G  S  P  R  S  F  L  I  T  D  W  A  W  S  K  V  K  A  G  K  M  N  E  V  L  D  A  I  L  V  K  T  E  D  S  V  S  A  N  P  R  A  I  M  V  R  F  L  L  V  G  I  L  C  A  H  V  M  V  A  L  R  P  T  I  L  D  A  L  K  M  L  E  G  D  I  E  V  P  E  I  P  D  R  P  A  P  L  G  H  P  S  F  Y  N  A  S  G  N  T  F  S  I  S  P  A  L  S  C  L  Q  M  P  A  G  D  M  L  R  *  Q  Y  E  V  F  S  Y  D  I  L  F  L  L  I  E  I  R  R  K  L  M  K  F  L  L  E  L  N  L  G  T  E  C  L  E  I  F  L  I  K  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109402" stop="108431"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYKGTLADGTNVAVKKIIESDFQGNDEFCNEVEIISNLKHRNLVSLRGCCVTDKNRIENGESERFLVYDYMPNGNLEDHLFAVNQGGILKQPLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLVKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKVLDFSSGSPRSFLITDWAWSKVKAGKMNEVLDAILVKTEDSVSANPRAIMVRFLLVGILCAHVMVALRPTILDALKMLEGDIEVPEIPDRPAPLGHPSFYNASGNTFSISPALSCLQMPAGDMLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="117225" PGL_stop="112043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117215" e_stop="117010"/>
            <exon e_start="116332" e_stop="116231"/>
            <exon e_start="115988" e_stop="115955"/>
            <exon e_start="115553" e_stop="115480"/>
            <exon e_start="115392" e_stop="115327"/>
            <exon e_start="115217" e_stop="115153"/>
            <exon e_start="115011" e_stop="114924"/>
            <exon e_start="114816" e_stop="114751"/>
            <exon e_start="113681" e_stop="113516"/>
            <exon e_start="113319" e_stop="113236"/>
            <exon e_start="112920" e_stop="112793"/>
            <exon e_start="112515" e_stop="112272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.947" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.900" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="117215" e_stop="117010" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116332" e_stop="116231" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.992">
            <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115988" e_stop="115955" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115553" e_stop="115480" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.981">
            <gDNA_intron_boundary i_start="115479" i_stop="115393" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115392" e_stop="115327" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.984">
            <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115153" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.867" acc_prob="0.994">
            <gDNA_intron_boundary i_start="115152" i_stop="115012" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115011" e_stop="114924" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.771" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114816" e_stop="114751" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.950" acc_prob="0.833">
            <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="113681" e_stop="113516" e_length="166"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113515" i_stop="113320" i_length="196"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113319" e_stop="113236" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="112920" e_stop="112793" e_length="128"/>
          </exon>
          <intron i_serial="11" don_prob="0.973" acc_prob="0.900">
            <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="112515" e_stop="112272" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117215" stop="117010"/>
              <exon start="116332" stop="116231"/>
              <exon start="115988" stop="115955"/>
              <exon start="115553" stop="115480"/>
              <exon start="115392" stop="115327"/>
              <exon start="115217" stop="115153"/>
              <exon start="115011" stop="114924"/>
              <exon start="114816" stop="114751"/>
              <exon start="113681" stop="113516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117204" stop="117010"/>
              <exon start="116332" stop="116231"/>
              <exon start="115988" stop="115955"/>
              <exon start="115553" stop="115480"/>
              <exon start="115392" stop="115327"/>
              <exon start="115217" stop="115153"/>
              <exon start="115011" stop="114948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117179" stop="117010"/>
              <exon start="116332" stop="116231"/>
              <exon start="115988" stop="115955"/>
              <exon start="115553" stop="115480"/>
              <exon start="115392" stop="115327"/>
              <exon start="115217" stop="115153"/>
              <exon start="115011" stop="114924"/>
              <exon start="114816" stop="114751"/>
              <exon start="113681" stop="113614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114789" stop="114751"/>
              <exon start="113681" stop="113516"/>
              <exon start="113319" stop="113236"/>
              <exon start="112920" stop="112793"/>
              <exon start="112515" stop="112272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114789" stop="114751"/>
              <exon start="113681" stop="113516"/>
              <exon start="113319" stop="113236"/>
              <exon start="112920" stop="112793"/>
              <exon start="112515" stop="112458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAAGAGAGATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC : GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG : GTTGTGGATCTTTCACACTATGGCAGGATAAGAG : TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAG : GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG : AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAA : GTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAA : ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT : GTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAG : GAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG : GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG : GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATA</gDNA_template>
            <first_frame> L  Q  E  R  W  R  L  S  T  L  Q  I  C  Y  F  P  L  F  L  F  L  L  H  H  P  Y  L  C  H  Y  L  T  G  H  T  M  C  R  R  R  R  L  I  D  A  F  L  L  L  F  L  L  L  R  C  H  S  I  F  L  L  L  P  S  T  T  T  S  S :   I  L  *  Q  L  L  G  Q  R  Y  Q  K  M  G  *  *  G  H  S  I  M  T  R  R  H  *  M  L  L  R  M  V  L  R :   L  W  I  F  H  T  M  A  G  *  E  :  L  V  E  K  T  G  F  S  F  F  T  T  K  V  L  L  T  L  K  F  F  M  R  G  R :   D  V  T  L  F  L  *  H  Q  L  L  E  P  S  I  L  P  M  P  G  L  * :   K  R  Q  S  H  *  W  S  L  Q  *  P  G  K  E  *  L  I  C  L  R   : S  T  Y  S  L  Q  T  K  L  K  F  K  I  L  P  R  K  R  P  C  S  Y  *  *  G  L  Q  V  T  K :   *  W  R  L  *  V  L  L  T  *  L  D  N  H  M  D  R  I  S  I  T  M :   *  M  E  C  Q  *  L  W  E  W  E  I  S  S  L  K  K  V  I  Y  Y  *  C  L  Q  L  L  L  N  R  S  G  K  L  F  *  V  M  V  L  S  Q  W  V  L  M  H  G  K  L  *  G  F  F  K  :  E  D  Q  L  L  V  K  S  S  Q  T  S  L  M  F  W  R  L  I  C  G  M  L  F  L  *  I  K  :  G  A  I  R  A  K  K  P  L  L  D  L  *  L  T  M  A  S  S  R  D  Y  G  E  Y  V  S  H  R  L  W  N  L  V  A  L  S  Q  L  M  G  K  R :   L  A  R  *  R  V  S  Q  L  V  N  E  H  L  S  P  S  V  L  A  I  L  R  G  K  L  L  L  R  E  T  V  *  L  L  V  M  M  L  R  V  Q  W  W  K  C  L  F  S  L  V  K  S  L  H  P  R  A  E  Y  R  Q  H  Y  L  S  S  L  L  L  C  I  N  K  C  S  I  C  D  V  I </first_frame>
            <second_frame>  C  K  R  D  G  V  S  L  L  C  K  F  V  I  S  L  S  S  F  F  F  F  I  I  P  T  Y  A  T  T  L  P  A  I  R  C  V  A  G  E  D  *  S  T  P  F  F  F  F  F  F  C  C  A  A  I  R  S  F  S  S  S  H  R  P  R  P  P   : R  Y  Y  D  N  C  W  G  K  G  I  R  R  W  G  N  R  D  I  R  *  *  R  G  G  I  R  C  C  *  E  W  C  C   : G  C  G  S  F  T  L  W  Q  D  K  S :   *  W  R  R  Q  G  S  V  S  S  Q  P  K  Y  C  *  L  *  N  S  S  *  G  A   : G  M  *  H  C  F  C  D  T  N  C  *  N  H  R  Y  C  P  C  L  G  Y   : E  N  G  N  H  I  S  G  L  S  S  D  Q  G  K  N  N  S  Y  A  *  E  :  V  H  I  L  C  R  Q  S  *  N  S  R  Y  Y  R  E  N  V  L  V  L  T  S  R  A  Y  K  *  Q   : N  N  G  G  S  E  S  C  *  H  S  W  T  T  I  W  I  A  *  A  L  Q   : C  K  W  N  A  N  N  C  G  S  G  K  Y  H  L  *  R  R  L  F  T  T  D  V  S  S  C  C  *  I  G  L  E  S  Y  S  R  S  W  C  C  P  N  G  F  *  C  M  G  N  F  K  D  S  S  R :   K  T  S  S  W  *  R  A  H  R  R  V  *  C  S  G  G  *  S  V  E  C  C  F  S  E  *  R :   V  L  *  G  P  R  N  H  C  *  T  C  N  L  R  W  H  Q  A  E  T  M  G  N  T  C  L  I  A  C  G  T  W  *  H  Y  L  S  *  W  E  K   : G  W  Q  G  D  E  F  H  N  W  *  T  S  I  S  A  P  R  S  W  L  Y  *  E  E  S  C  F  *  G  R  Q  C  N  Y  W  *  *  C  *  G  Y  S  G  G  S  A  F  S  R  S  S  N  P  S  I  L  E  L  N  I  D  N  I  I  S  P  L  C  Y  S  V  S  T  N  V  A  Y  V  M  S   </second_frame>
            <third_frame>   A  R  E  M  A  S  L  Y  S  A  N  L  L  F  P  S  L  P  F  S  S  S  S  S  L  L  M  P  L  P  Y  R  P  Y  D  V  S  P  A  K  I  N  R  R  L  S  S  S  F  S  S  A  A  L  P  F  D  L  S  P  P  P  I  D  H  D  L  L  :  D  T  M  T  I  A  G  A  K  V  S  E  D  G  V  I  G  T  F  D  N  D  E  E  A  L  D  A  V  E  N  G  V  A  :  V  V  D  L  S  H  Y  G  R  I  R   : V  S  G  E  D  R  V  Q  F  L  H  N  Q  S  T  A  N  F  E  I  L  H  E  G  Q  :  G  C  D  T  V  F  V  T  P  T  A  R  T  I  D  I  A  H  A  W  V  M  :  K  T  A  I  T  L  V  V  S  P  V  T  R  E  R  I  T  H  M  L  E  K :   Y  I  F  F  A  D  K  V  E  I  Q  D  I  T  E  K  T  S  L  F  L  L  V  G  P  T  S  N  K  :  I  M  E  A  L  S  L  A  D  I  V  G  Q  P  Y  G  S  H  K  H  Y  N  :  V  N  G  M  P  I  T  V  G  V  G  N  I  I  S  E  E  G  Y  L  L  L  M  S  P  A  A  A  E  S  V  W  K  A  I  L  G  H  G  A  V  P  M  G  S  N  A  W  E  T  L  R  I  L  Q   : G  R  P  A  P  G  K  E  L  T  D  E  F  N  V  L  E  A  N  L  W  N  A  V  S  L  N  K   : G  C  Y  K  G  Q  E  T  I  A  R  L  V  T  Y  D  G  I  K  Q  R  L  W  G  I  R  V  S  S  P  V  E  P  G  S  T  I  S  V  N  G  K  K  :  V  G  K  V  T  S  F  T  T  G  K  R  A  S  Q  P  L  G  L  G  Y  I  K  R  K  A  A  S  E  G  D  S  V  I  I  G  D  D  V  E  G  T  V  V  E  V  P  F  L  A  R  Q  I  P  P  S  *  S  *  I  *  T  T  L  S  L  L  S  A  T  L  Y  Q  Q  M  *  H  M  *  C  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117213" stop="117010"/>
                    <exon start="116332" stop="116231"/>
                    <exon start="115988" stop="115955"/>
                    <exon start="115553" stop="115480"/>
                    <exon start="115392" stop="115327"/>
                    <exon start="115217" stop="115153"/>
                    <exon start="115011" stop="114924"/>
                    <exon start="114816" stop="114751"/>
                    <exon start="113681" stop="113516"/>
                    <exon start="113319" stop="113236"/>
                    <exon start="112920" stop="112793"/>
                    <exon start="112515" stop="112345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AREMASLYSANLLFPSLPFSSSSSLLMPLPYRPYDVSPAKINRRLSSSFSSAALPFDLSPPPIDHDLLDTMTIAGAKVSEDGVIGTFDNDEEALDAVENGVAVVDLSHYGRIRVSGEDRVQFLHNQSTANFEILHEGQGCDTVFVTPTARTIDIAHAWVMKTAITLVVSPVTRERITHMLEKYIFFADKVEIQDITEKTSLFLLVGPTSNKIMEALSLADIVGQPYGSHKHYNVNGMPITVGVGNIISEEGYLLLMSPAAAESVWKAILGHGAVPMGSNAWETLRILQGRPAPGKELTDEFNVLEANLWNAVSLNKGCYKGQETIARLVTYDGIKQRLWGIRVSSPVEPGSTISVNGKKVGKVTSFTTGKRASQPLGLGYIKRKAASEGDSVIIGDDVEGTVVEVPFLARQIPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117225" e_stop="117010"/>
            <exon e_start="116332" e_stop="116231"/>
            <exon e_start="115988" e_stop="115955"/>
            <exon e_start="115553" e_stop="115477"/>
            <exon e_start="115392" e_stop="115327"/>
            <exon e_start="115217" e_stop="115153"/>
            <exon e_start="115011" e_stop="114924"/>
            <exon e_start="114816" e_stop="114751"/>
            <exon e_start="113681" e_stop="113516"/>
            <exon e_start="113319" e_stop="113236"/>
            <exon e_start="112920" e_stop="112793"/>
            <exon e_start="112515" e_stop="112160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.900" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117225" e_stop="117010" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116332" e_stop="116231" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.992">
            <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115988" e_stop="115955" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115553" e_stop="115477" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="115476" i_stop="115393" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115392" e_stop="115327" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.984">
            <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115153" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.867" acc_prob="0.994">
            <gDNA_intron_boundary i_start="115152" i_stop="115012" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115011" e_stop="114924" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.771" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114816" e_stop="114751" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.950" acc_prob="0.833">
            <gDNA_intron_boundary i_start="114750" i_stop="113682" i_length="1069"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="113681" e_stop="113516" e_length="166"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113515" i_stop="113320" i_length="196"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="113319" e_stop="113236" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="112920" e_stop="112793" e_length="128"/>
          </exon>
          <intron i_serial="11" don_prob="0.973" acc_prob="0.900">
            <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="112515" e_stop="112160" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117225" stop="117010"/>
              <exon start="116332" stop="116231"/>
              <exon start="115988" stop="115955"/>
              <exon start="115553" stop="115477"/>
              <exon start="115392" stop="115327"/>
              <exon start="115217" stop="115153"/>
              <exon start="115011" stop="114924"/>
              <exon start="114816" stop="114751"/>
              <exon start="113681" stop="113516"/>
              <exon start="113319" stop="113236"/>
              <exon start="112920" stop="112793"/>
              <exon start="112515" stop="112160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114789" stop="114751"/>
              <exon start="113681" stop="113516"/>
              <exon start="113319" stop="113236"/>
              <exon start="112920" stop="112793"/>
              <exon start="112515" stop="112272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114789" stop="114751"/>
              <exon start="113681" stop="113516"/>
              <exon start="113319" stop="113236"/>
              <exon start="112920" stop="112793"/>
              <exon start="112515" stop="112458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTGTGAAATTGCAAGAGAGATGGCGTCTCTCTACTCTGCAAATTTGTTATTTCCCTCTCTTCCTTTTTCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC : GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG : GTTGTGGATCTTTCACACTATGGCAGGATAAGAG : TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTA : GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG : AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAA : GTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAA : ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATAAGCATTACAAT : GTAAATGGAATGCCAATAACTGTGGGAGTGGGAAATATCATCTCTGAAGAAGGTTATTTACTACTGATGTCTCCAGCTGCTGCTGAATCGGTCTGGAAAGCTATTCTAGGTCATGGTGCTGTCCCAATGGGTTCTAATGCATGGGAAACTTTAAGGATTCTTCAAG : GAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG : GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG : GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATAATTTACCTTTGGTGTAACATCTGCTCTCTGGTTCGTGTGTTTTGTCTCGTTAATGGCTCTACCAGAAGCTAGACGATAGCATCCTTGAAGACCCCTTAAAGTTGCTTACCCA</gDNA_template>
            <first_frame> W  C  E  I  A  R  E  M  A  S  L  Y  S  A  N  L  L  F  P  S  L  P  F  S  S  S  S  S  L  L  M  P  L  P  Y  R  P  Y  D  V  S  P  A  K  I  N  R  R  L  S  S  S  F  S  S  A  A  L  P  F  D  L  S  P  P  P  I  D  H  D  L  L  :  D  T  M  T  I  A  G  A  K  V  S  E  D  G  V  I  G  T  F  D  N  D  E  E  A  L  D  A  V  E  N  G  V  A  :  V  V  D  L  S  H  Y  G  R  I  R   : V  S  G  E  D  R  V  Q  F  L  H  N  Q  S  T  A  N  F  E  I  L  H  E  G  Q  V  :  G  C  D  T  V  F  V  T  P  T  A  R  T  I  D  I  A  H  A  W  V  M  :  K  T  A  I  T  L  V  V  S  P  V  T  R  E  R  I  T  H  M  L  E  K :   Y  I  F  F  A  D  K  V  E  I  Q  D  I  T  E  K  T  S  L  F  L  L  V  G  P  T  S  N  K  :  I  M  E  A  L  S  L  A  D  I  V  G  Q  P  Y  G  S  H  K  H  Y  N  :  V  N  G  M  P  I  T  V  G  V  G  N  I  I  S  E  E  G  Y  L  L  L  M  S  P  A  A  A  E  S  V  W  K  A  I  L  G  H  G  A  V  P  M  G  S  N  A  W  E  T  L  R  I  L  Q   : G  R  P  A  P  G  K  E  L  T  D  E  F  N  V  L  E  A  N  L  W  N  A  V  S  L  N  K   : G  C  Y  K  G  Q  E  T  I  A  R  L  V  T  Y  D  G  I  K  Q  R  L  W  G  I  R  V  S  S  P  V  E  P  G  S  T  I  S  V  N  G  K  K  :  V  G  K  V  T  S  F  T  T  G  K  R  A  S  Q  P  L  G  L  G  Y  I  K  R  K  A  A  S  E  G  D  S  V  I  I  G  D  D  V  E  G  T  V  V  E  V  P  F  L  A  R  Q  I  P  P  S  *  S  *  I  *  T  T  L  S  L  L  S  A  T  L  Y  Q  Q  M  *  H  M  *  C  H  N  L  P  L  V  *  H  L  L  S  G  S  C  V  L  S  R  *  W  L  Y  Q  K  L  D  D  S  I  L  E  D  P  L  K  L  L  T   </first_frame>
            <second_frame>  G  V  K  L  Q  E  R  W  R  L  S  T  L  Q  I  C  Y  F  P  L  F  L  F  L  L  H  H  P  Y  L  C  H  Y  L  T  G  H  T  M  C  R  R  R  R  L  I  D  A  F  L  L  L  F  L  L  L  R  C  H  S  I  F  L  L  L  P  S  T  T  T  S  S :   I  L  *  Q  L  L  G  Q  R  Y  Q  K  M  G  *  *  G  H  S  I  M  T  R  R  H  *  M  L  L  R  M  V  L  R :   L  W  I  F  H  T  M  A  G  *  E  :  L  V  E  K  T  G  F  S  F  F  T  T  K  V  L  L  T  L  K  F  F  M  R  G  R  * :   D  V  T  L  F  L  *  H  Q  L  L  E  P  S  I  L  P  M  P  G  L  * :   K  R  Q  S  H  *  W  S  L  Q  *  P  G  K  E  *  L  I  C  L  R   : S  T  Y  S  L  Q  T  K  L  K  F  K  I  L  P  R  K  R  P  C  S  Y  *  *  G  L  Q  V  T  K :   *  W  R  L  *  V  L  L  T  *  L  D  N  H  M  D  R  I  S  I  T  M :   *  M  E  C  Q  *  L  W  E  W  E  I  S  S  L  K  K  V  I  Y  Y  *  C  L  Q  L  L  L  N  R  S  G  K  L  F  *  V  M  V  L  S  Q  W  V  L  M  H  G  K  L  *  G  F  F  K  :  E  D  Q  L  L  V  K  S  S  Q  T  S  L  M  F  W  R  L  I  C  G  M  L  F  L  *  I  K  :  G  A  I  R  A  K  K  P  L  L  D  L  *  L  T  M  A  S  S  R  D  Y  G  E  Y  V  S  H  R  L  W  N  L  V  A  L  S  Q  L  M  G  K  R :   L  A  R  *  R  V  S  Q  L  V  N  E  H  L  S  P  S  V  L  A  I  L  R  G  K  L  L  L  R  E  T  V  *  L  L  V  M  M  L  R  V  Q  W  W  K  C  L  F  S  L  V  K  S  L  H  P  R  A  E  Y  R  Q  H  Y  L  S  S  L  L  L  C  I  N  K  C  S  I  C  D  V  I  I  Y  L  W  C  N  I  C  S  L  V  R  V  F  C  L  V  N  G  S  T  R  S  *  T  I  A  S  L  K  T  P  *  S  C  L  P  </second_frame>
            <third_frame>   V  *  N  C  K  R  D  G  V  S  L  L  C  K  F  V  I  S  L  S  S  F  F  F  F  I  I  P  T  Y  A  T  T  L  P  A  I  R  C  V  A  G  E  D  *  S  T  P  F  F  F  F  F  F  C  C  A  A  I  R  S  F  S  S  S  H  R  P  R  P  P   : R  Y  Y  D  N  C  W  G  K  G  I  R  R  W  G  N  R  D  I  R  *  *  R  G  G  I  R  C  C  *  E  W  C  C   : G  C  G  S  F  T  L  W  Q  D  K  S :   *  W  R  R  Q  G  S  V  S  S  Q  P  K  Y  C  *  L  *  N  S  S  *  G  A  G   : R  M  *  H  C  F  C  D  T  N  C  *  N  H  R  Y  C  P  C  L  G  Y   : E  N  G  N  H  I  S  G  L  S  S  D  Q  G  K  N  N  S  Y  A  *  E  :  V  H  I  L  C  R  Q  S  *  N  S  R  Y  Y  R  E  N  V  L  V  L  T  S  R  A  Y  K  *  Q   : N  N  G  G  S  E  S  C  *  H  S  W  T  T  I  W  I  A  *  A  L  Q   : C  K  W  N  A  N  N  C  G  S  G  K  Y  H  L  *  R  R  L  F  T  T  D  V  S  S  C  C  *  I  G  L  E  S  Y  S  R  S  W  C  C  P  N  G  F  *  C  M  G  N  F  K  D  S  S  R :   K  T  S  S  W  *  R  A  H  R  R  V  *  C  S  G  G  *  S  V  E  C  C  F  S  E  *  R :   V  L  *  G  P  R  N  H  C  *  T  C  N  L  R  W  H  Q  A  E  T  M  G  N  T  C  L  I  A  C  G  T  W  *  H  Y  L  S  *  W  E  K   : G  W  Q  G  D  E  F  H  N  W  *  T  S  I  S  A  P  R  S  W  L  Y  *  E  E  S  C  F  *  G  R  Q  C  N  Y  W  *  *  C  *  G  Y  S  G  G  S  A  F  S  R  S  S  N  P  S  I  L  E  L  N  I  D  N  I  I  S  P  L  C  Y  S  V  S  T  N  V  A  Y  V  M  S  *  F  T  F  G  V  T  S  A  L  W  F  V  C  F  V  S  L  M  A  L  P  E  A  R  R  *  H  P  *  R  P  L  K  V  A  Y  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117225" stop="117010"/>
                    <exon start="116332" stop="116231"/>
                    <exon start="115988" stop="115955"/>
                    <exon start="115553" stop="115477"/>
                    <exon start="115392" stop="115327"/>
                    <exon start="115217" stop="115153"/>
                    <exon start="115011" stop="114924"/>
                    <exon start="114816" stop="114751"/>
                    <exon start="113681" stop="113516"/>
                    <exon start="113319" stop="113236"/>
                    <exon start="112920" stop="112793"/>
                    <exon start="112515" stop="112345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCEIAREMASLYSANLLFPSLPFSSSSSLLMPLPYRPYDVSPAKINRRLSSSFSSAALPFDLSPPPIDHDLLDTMTIAGAKVSEDGVIGTFDNDEEALDAVENGVAVVDLSHYGRIRVSGEDRVQFLHNQSTANFEILHEGQVGCDTVFVTPTARTIDIAHAWVMKTAITLVVSPVTRERITHMLEKYIFFADKVEIQDITEKTSLFLLVGPTSNKIMEALSLADIVGQPYGSHKHYNVNGMPITVGVGNIISEEGYLLLMSPAAAESVWKAILGHGAVPMGSNAWETLRILQGRPAPGKELTDEFNVLEANLWNAVSLNKGCYKGQETIARLVTYDGIKQRLWGIRVSSPVEPGSTISVNGKKVGKVTSFTTGKRASQPLGLGYIKRKAASEGDSVIIGDDVEGTVVEVPFLARQIPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="113321" e_stop="113236"/>
            <exon e_start="112920" e_stop="112793"/>
            <exon e_start="112515" e_stop="112043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.900" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113321" e_stop="113236" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113235" i_stop="112921" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112920" e_stop="112793" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.900">
            <gDNA_intron_boundary i_start="112792" i_stop="112516" i_length="277"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112515" e_stop="112043" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113321" stop="113236"/>
              <exon start="112920" stop="112793"/>
              <exon start="112515" stop="112043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAGACCAGCTCCTGGTAAAGAGCTCACAGACGAGTTTAATGTTCTGGAGGCTAATCTGTGGAATGCTGTTTCTCTGAATAAAG : GGTGCTATAAGGGCCAAGAAACCATTGCTAGACTTGTAACTTACGATGGCATCAAGCAGAGACTATGGGGAATACGTGTCTCATCGCCTGTGGAACCTGGTAGCACTATCTCAGTTAATGGGAAAAAG : GTTGGCAAGGTGACGAGTTTCACAACTGGTAAACGAGCATCTCAGCCCCTCGGTCTTGGCTATATTAAGAGGAAAGCTGCTTCTGAGGGAGACAGTGTAATTATTGGTGATGATGTTGAGGGTACAGTGGTGGAAGTGCCTTTTCTCGCTCGTCAAATCCCTCCATCCTAGAGCTGAATATAGACAACATTATCTCTCCTCTCTGCTACTCTGTATCAACAAATGTAGCATATGTGATGTCATAATTTACCTTTGGTGTAACATCTGCTCTCTGGTTCGTGTGTTTTGTCTCGTTAATGGCTCTACCAGAAGCTAGACGATAGCATCCTTGAAGACCCCTTAAAGTTGCTTACCCAATCGTTTGAGCCATTAACATTTTTGCTTCATTATAGCCACCTGTTGGCCTCCCGCAGAAAAGGAAATGAGGAAGCTAAGTGATAGAAATCAGGTGAGTGGAAAAAATCTTCTGATGT</gDNA_template>
            <first_frame> R  K  T  S  S  W  *  R  A  H  R  R  V  *  C  S  G  G  *  S  V  E  C  C  F  S  E  *  R :   V  L  *  G  P  R  N  H  C  *  T  C  N  L  R  W  H  Q  A  E  T  M  G  N  T  C  L  I  A  C  G  T  W  *  H  Y  L  S  *  W  E  K   : G  W  Q  G  D  E  F  H  N  W  *  T  S  I  S  A  P  R  S  W  L  Y  *  E  E  S  C  F  *  G  R  Q  C  N  Y  W  *  *  C  *  G  Y  S  G  G  S  A  F  S  R  S  S  N  P  S  I  L  E  L  N  I  D  N  I  I  S  P  L  C  Y  S  V  S  T  N  V  A  Y  V  M  S  *  F  T  F  G  V  T  S  A  L  W  F  V  C  F  V  S  L  M  A  L  P  E  A  R  R  *  H  P  *  R  P  L  K  V  A  Y  P  I  V  *  A  I  N  I  F  A  S  L  *  P  P  V  G  L  P  Q  K  R  K  *  G  S  *  V  I  E  I  R  *  V  E  K  I  F  *  C </first_frame>
            <second_frame>  G  R  P  A  P  G  K  E  L  T  D  E  F  N  V  L  E  A  N  L  W  N  A  V  S  L  N  K   : G  C  Y  K  G  Q  E  T  I  A  R  L  V  T  Y  D  G  I  K  Q  R  L  W  G  I  R  V  S  S  P  V  E  P  G  S  T  I  S  V  N  G  K  K  :  V  G  K  V  T  S  F  T  T  G  K  R  A  S  Q  P  L  G  L  G  Y  I  K  R  K  A  A  S  E  G  D  S  V  I  I  G  D  D  V  E  G  T  V  V  E  V  P  F  L  A  R  Q  I  P  P  S  *  S  *  I  *  T  T  L  S  L  L  S  A  T  L  Y  Q  Q  M  *  H  M  *  C  H  N  L  P  L  V  *  H  L  L  S  G  S  C  V  L  S  R  *  W  L  Y  Q  K  L  D  D  S  I  L  E  D  P  L  K  L  L  T  Q  S  F  E  P  L  T  F  L  L  H  Y  S  H  L  L  A  S  R  R  K  G  N  E  E  A  K  *  *  K  S  G  E  W  K  K  S  S  D   </second_frame>
            <third_frame>   E  D  Q  L  L  V  K  S  S  Q  T  S  L  M  F  W  R  L  I  C  G  M  L  F  L  *  I  K  :  G  A  I  R  A  K  K  P  L  L  D  L  *  L  T  M  A  S  S  R  D  Y  G  E  Y  V  S  H  R  L  W  N  L  V  A  L  S  Q  L  M  G  K  R :   L  A  R  *  R  V  S  Q  L  V  N  E  H  L  S  P  S  V  L  A  I  L  R  G  K  L  L  L  R  E  T  V  *  L  L  V  M  M  L  R  V  Q  W  W  K  C  L  F  S  L  V  K  S  L  H  P  R  A  E  Y  R  Q  H  Y  L  S  S  L  L  L  C  I  N  K  C  S  I  C  D  V  I  I  Y  L  W  C  N  I  C  S  L  V  R  V  F  C  L  V  N  G  S  T  R  S  *  T  I  A  S  L  K  T  P  *  S  C  L  P  N  R  L  S  H  *  H  F  C  F  I  I  A  T  C  W  P  P  A  E  K  E  M  R  K  L  S  D  R  N  Q  V  S  G  K  N  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113320" stop="113236"/>
                    <exon start="112920" stop="112793"/>
                    <exon start="112515" stop="112345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRPAPGKELTDEFNVLEANLWNAVSLNKGCYKGQETIARLVTYDGIKQRLWGIRVSSPVEPGSTISVNGKKVGKVTSFTTGKRASQPLGLGYIKRKAASEGDSVIIGDDVEGTVVEVPFLARQIPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="121642" PGL_stop="119918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121642" e_stop="121616"/>
            <exon e_start="121496" e_stop="121384"/>
            <exon e_start="121239" e_stop="121104"/>
            <exon e_start="121015" e_stop="120911"/>
            <exon e_start="120671" e_stop="120349"/>
            <exon e_start="120104" e_stop="119918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="0.889"/>
          <exon-intron don_prob="0.900" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="121642" e_stop="121616" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="121615" i_stop="121497" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121496" e_stop="121384" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.926">
            <gDNA_intron_boundary i_start="121383" i_stop="121240" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121239" e_stop="121104" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="121103" i_stop="121016" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121015" e_stop="120911" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.976">
            <gDNA_intron_boundary i_start="120910" i_stop="120672" i_length="239"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120671" e_stop="120349" e_length="323"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="120348" i_stop="120105" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="120104" e_stop="119918" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121642" stop="121616"/>
              <exon start="121496" stop="121384"/>
              <exon start="121239" stop="121104"/>
              <exon start="121015" stop="120911"/>
              <exon start="120671" stop="120349"/>
              <exon start="120104" stop="119918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGCTCCCATTGGTGGCTATATTGAT : ACTGTGATGTCCCTGGTACTTAAAGAATTAGCTTCAGCGGATGCTACAAACCGAAGGAACGCAGCATTTTGTGTTGGCGAGTTGTGCAAAAATGGTGGTGATGCTGCTTTGAA : ATATTATGGAGATGCCTTACGTGGCCTTTACCCATTGTTTGGCGAAGCTGAGCCAGATAATGCAGTGAGAGACAATGCTGCTGGTGCGGTGGCAAGGATGATAATGGTTCATCCAGAGACAATCCCACTGAATCAG : GTGCTACCTGTTTTCTTGAAAGTTCTTCCTCTAAAAGAAGATCATGAAGAATCCATGGCAGTCTACAGTTGCATATGCAATCTTGTGTTGTCATCTAACTCTCAG : ATCTTATCTTTGGTTCCGGAGTTGGTAAATGTTTTTGCCCAGGTTGCCATGTCACCTGTTGAAACCCCTGAAGTCAAGGCTCATGTTGGAAAAGCATTTTCTCACCTAATTTCGATTTATGGTCATCAAATGCAGCCTCTTCTGAGTAATCTTTCACCTGCACATGCTAATGCTCTTGCAACTATTGCACCTCAGAGCTGACATGTAAAGAGCCTTTGAGAAGAGCAAGTTTTATATATTGTGTTCCTGTAATATTGAATATTATCTTATTCATCAGACACATCCATGGTGGAAGAGCAGCTAATTAGGCTGATCGCGTCCAG : GTTTGCGTCATTTTATTTTTTTGCCAGGTGTCAAAGTTTTCCATGGAGATGCAATATCTTCCATTTTGACATATTCTACAGAAGAGTTGTCTTTTCTTTCTACTTTCAGGGTGATGTGATGGAGGAAAAGGGGGGTGGGGGTGGGGTTGTTAGCCATTTTTAGATTGTTTTATTTATTTGTTACAAT</gDNA_template>
            <first_frame> G  A  P  I  G  G  Y  I  D  :  T  V  M  S  L  V  L  K  E  L  A  S  A  D  A  T  N  R  R  N  A  A  F  C  V  G  E  L  C  K  N  G  G  D  A  A  L  K :   Y  Y  G  D  A  L  R  G  L  Y  P  L  F  G  E  A  E  P  D  N  A  V  R  D  N  A  A  G  A  V  A  R  M  I  M  V  H  P  E  T  I  P  L  N  Q  :  V  L  P  V  F  L  K  V  L  P  L  K  E  D  H  E  E  S  M  A  V  Y  S  C  I  C  N  L  V  L  S  S  N  S  Q  :  I  L  S  L  V  P  E  L  V  N  V  F  A  Q  V  A  M  S  P  V  E  T  P  E  V  K  A  H  V  G  K  A  F  S  H  L  I  S  I  Y  G  H  Q  M  Q  P  L  L  S  N  L  S  P  A  H  A  N  A  L  A  T  I  A  P  Q  S  *  H  V  K  S  L  *  E  E  Q  V  L  Y  I  V  F  L  *  Y  *  I  L  S  Y  S  S  D  T  S  M  V  E  E  Q  L  I  R  L  I  A  S  R :   F  A  S  F  Y  F  F  A  R  C  Q  S  F  P  W  R  C  N  I  F  H  F  D  I  F  Y  R  R  V  V  F  S  F  Y  F  Q  G  D  V  M  E  E  K  G  G  G  G  G  V  V  S  H  F  *  I  V  L  F  I  C  Y  N </first_frame>
            <second_frame>  V  L  P  L  V  A  I  L  I :   L  *  C  P  W  Y  L  K  N  *  L  Q  R  M  L  Q  T  E  G  T  Q  H  F  V  L  A  S  C  A  K  M  V  V  M  L  L  *   : N  I  M  E  M  P  Y  V  A  F  T  H  C  L  A  K  L  S  Q  I  M  Q  *  E  T  M  L  L  V  R  W  Q  G  *  *  W  F  I  Q  R  Q  S  H  *  I  R :   C  Y  L  F  S  *  K  F  F  L  *  K  K  I  M  K  N  P  W  Q  S  T  V  A  Y  A  I  L  C  C  H  L  T  L  R :   S  Y  L  W  F  R  S  W  *  M  F  L  P  R  L  P  C  H  L  L  K  P  L  K  S  R  L  M  L  E  K  H  F  L  T  *  F  R  F  M  V  I  K  C  S  L  F  *  V  I  F  H  L  H  M  L  M  L  L  Q  L  L  H  L  R  A  D  M  *  R  A  F  E  K  S  K  F  Y  I  L  C  S  C  N  I  E  Y  Y  L  I  H  Q  T  H  P  W  W  K  S  S  *  L  G  *  S  R  P   : G  L  R  H  F  I  F  L  P  G  V  K  V  F  H  G  D  A  I  S  S  I  L  T  Y  S  T  E  E  L  S  F  L  S  T  F  R  V  M  *  W  R  K  R  G  V  G  V  G  L  L  A  I  F  R  L  F  Y  L  F  V  T   </second_frame>
            <third_frame>   C  S  H  W  W  L  Y  *   : Y  C  D  V  P  G  T  *  R  I  S  F  S  G  C  Y  K  P  K  E  R  S  I  L  C  W  R  V  V  Q  K  W  W  *  C  C  F  E  :  I  L  W  R  C  L  T  W  P  L  P  I  V  W  R  S  *  A  R  *  C  S  E  R  Q  C  C  W  C  G  G  K  D  D  N  G  S  S  R  D  N  P  T  E  S   : G  A  T  C  F  L  E  S  S  S  S  K  R  R  S  *  R  I  H  G  S  L  Q  L  H  M  Q  S  C  V  V  I  *  L  S   : D  L  I  F  G  S  G  V  G  K  C  F  C  P  G  C  H  V  T  C  *  N  P  *  S  Q  G  S  C  W  K  S  I  F  S  P  N  F  D  L  W  S  S  N  A  A  S  S  E  *  S  F  T  C  T  C  *  C  S  C  N  Y  C  T  S  E  L  T  C  K  E  P  L  R  R  A  S  F  I  Y  C  V  P  V  I  L  N  I  I  L  F  I  R  H  I  H  G  G  R  A  A  N  *  A  D  R  V  Q  :  V  C  V  I  L  F  F  C  Q  V  S  K  F  S  M  E  M  Q  Y  L  P  F  *  H  I  L  Q  K  S  C  L  F  F  L  L  S  G  *  C  D  G  G  K  G  G  W  G  W  G  C  *  P  F  L  D  C  F  I  Y  L  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121642" stop="121616"/>
                    <exon start="121496" stop="121384"/>
                    <exon start="121239" stop="121104"/>
                    <exon start="121015" stop="120911"/>
                    <exon start="120671" stop="120471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GAPIGGYIDTVMSLVLKELASADATNRRNAAFCVGELCKNGGDAALKYYGDALRGLYPLFGEAEPDNAVRDNAAGAVARMIMVHPETIPLNQVLPVFLKVLPLKEDHEESMAVYSCICNLVLSSNSQILSLVPELVNVFAQVAMSPVETPEVKAHVGKAFSHLISIYGHQMQPLLSNLSPAHANALATIAPQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120413" stop="120349"/>
                    <exon start="120104" stop="119942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSYSSDTSMVEEQLIRLIASRFASFYFFARCQSFPWRCNIFHFDIFYRRVVFSFYFQGDVMEEKGGGGGVVSHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 107 chains have been computed
$ 
$ memory statistics:
$ 215208 bytes spliced alignments in total
$ 103 spliced alignments have been stored
$ 2089 bytes was the average size of a spliced alignment
$ 30000 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1666 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:31:09
-->
