<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:34:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1132" ref_strand="+" ref_description="T1132">
      <seq>ttgccattccttcgcttgctaccctagggtatttacgaagctggcggctgctatgaaaaaaaactacactcgattctcatatgaatttcaattgttagattccagttctgttgagtcccggcgtagcttgtatcaaaagctttcatcagtataggtttttgcacgtcaaggcgatgcaagacggttagtttgccacgcctacgtcgtgcgatgagtccaaagttagagttcctcatgttctgacggttgccgggtccgattccggcgccggcgccggaattcaagcggatatcaaggctagtgctgctcggggagtgtattgctccactgtgatcacggctgttactgctcaagataccgtaggggttcagggtgtgaacattgtgcctgaggattttgtagcacagcagttgacatcggtcctttccgatatgccgcccaatgttgtaagtatatcatgttagtgtcttgatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="9110" stop="7947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8811" g_stop="8441" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8353" g_stop="8247" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="478" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="T1132" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="T1132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8811" e_stop="8441"/>
          <exon e_start="8353" e_stop="8247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAGGTATTAATAATCTCCACGAGGTTATAGTCTGTTGATATTTCGCTATTGTGTTCGCCTTTGTGAATTTTGTTGTGTGGTTTGTTCTAGGGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCA</genome_strand>
        <mrna_strand>TTGCCATTCCTTCGCTTGCTACCCTAGGGTATTTACGAAGCTGGCGGCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTTAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTAGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAGATACCGTAGGGGTTCAG.......................................................................................GGTGTGAACATTGTGCCTGAGGATTTTGTAGCACAGCAGTTGACATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG245-F" ref_strand="+" ref_description="TG245-F">
      <seq>taatgatggttgagactataataacttcatctgtttctaagaaactctactttaatgctgtgttttcatggtatgtacacattgcaggttaacatacctgctgcttatcttagttccaacatggagtggactgagcaacaggagatacttagagagctcaattcagatggttgcaaatacaaatttttatatgttaccccagagaaagttgccaagtgcgtactcgtaatttcatttggtaacatttgaaacttatggtaacttctctgaatgaagtgtctgatatttaagagtaaagacaaatcttgaagttccttgtcacttccttattccttggctgatctgttattctggtgcaactatgaaatagtgagatgctagcaggaaaaataagttccttactggaggcatgaaagctttctgaaggtgtgatggataagctcctattaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="+" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="19793" stop="20847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20093" g_stop="20547" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="+" ref_id="TG245-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="+"/>
        <rDNA rDNA_id="TG245-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20093" e_stop="20547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATGGTTGAGACTATAATAACTTCATCTGTTTCTAAGAAACTCTACTTTAATGCTGTGTTTTCATGGTATGTACACATTGCAGGTTAACATACCTGCTGCTTATCTTAGTTCCAACATGGAGTGGACTGAGCAACAGGAGATACTTAGAGAGCTCAATTCAGATGGTTGCAAATACAAATTTTTATATGTTACCCCAGAGAAAGTTGCCAAGTGCGTACTCGTAATTTCATTTGGTAACATTTGAAACTTATGGTAACTTCTCTGAATGAAGTGTCTGATATTTAAGAGTAAAGACAAATCTTGAAGTTCCTTGTCACTTCCTTATTCCTTGGCTGATCTGTTATTCTGGTGCAACTATGAAATAGTGAGATGCTAGCAGGAAAAATAAGTTCCTTACTGGAGGCATGAAAGCTTTCTGAAGGTGTGATGGATAAGCTCCTATTAATGAAC</genome_strand>
        <mrna_strand>TAATGATGGTTGAGACTATAATAACTTCATCTGTTTCTAAGAAACTCTACTTTAATGCTGTGTTTTCATGGTATGTACACATTGCAGGTTAACATACCTGCTGCTTATCTTAGTTCCAACATGGAGTGGACTGAGCAACAGGAGATACTTAGAGAGCTCAATTCAGATGGTTGCAAATACAAATTTTTATATGTTACCCCAGAGAAAGTTGCCAAGTGCGTACTCGTAATTTCATTTGGTAACATTTGAAACTTATGGTAACTTCTCTGAATGAAGTGTCTGATATTTAAGAGTAAAGACAAATCTTGAAGTTCCTTGTCACTTCCTTATTCCTTGGCTGATCTGTTATTCTGGTGCAACTATGAAATAGTGAGATGCTAGCAGGAAAAATAAGTTCCTTACTGGAGGCATGAAAGCTTTCTGAAGGTGTGATGGATAAGCTCCTATTAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG245-R" ref_strand="+" ref_description="TG245-R">
      <seq>cttttctgctactctctcacaatccattctagaaagacaataaattatcccgcattgatcaaaatgattattctttataaaagtgccaatgtcttccaaacacttctttgtctttgggataacagtatatctgcaaatgatgaaaagttccacaatcatgtatttgtaaggccaaaaaaggtatggtaccactacactttcagaatcatttattcaccttaaatttgggcgattgaagctttgtcggaaaataatgcagttggcaagaccaagagcctgaacaacatcctccttgacacttattgtagcagtagcagtcaaggccagaacaggcacagttgggaacttttgcttcaggatacctaaacactggatgacaactgaaaagtttagcgtccatcaaaagtaccccaacaaatatgataacacaaaaaatgctcgaaaaagacattacctgataatcaggcctgaaatcatgtccccactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="21919" stop="20830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21619" g_stop="21130" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="TG245-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="TG245-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21619" e_stop="21130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGCTACTCTCTCACAATCCATTCTAGAAAGACAATAAATTATCCCGCATTGATCAAAATGATTATTCTTTATAAAAGTGCCAATGTCTTCCAAACACTTCTTTGTCTTTGGGATAACAGTATATCTGCAAATGATGAAAAGTTCCACAATCATGTATTTGTAAGGCCAAAAAAGGTATGGTACCACTACACTTTCAGAATCATTTATTCACCTTAAATTTGGGCGATTGAAGCTTTGTCGGAAAATAATGCAGTTGGCAAGACCAAGAGCCTGAACAACATCCTCCTTGACACTTATTGTAGCAGTAGCAGTCAAGGCCAGAACAGGCACAGTTGGGAACTTTTGCTTCAGGATACCTAAACACTGGATGACAACTGAAAAGTTTAGCGTCCATCAAAAGTACCCCAACAAATATGATAACACAAAAAATGCTCGAAAAAGACATTACCTGATAATCAGGCCTGAAATCATGTCCCCACTGGCT</genome_strand>
        <mrna_strand>CTTTTCTGCTACTCTCTCACAATCCATTCTAGAAAGACAATAAATTATCCCGCATTGATCAAAATGATTATTCTTTATAAAAGTGCCAATGTCTTCCAAACACTTCTTTGTCTTTGGGATAACAGTATATCTGCAAATGATGAAAAGTTCCACAATCATGTATTTGTAAGGCCAAAAAAGGTATGGTACCACTACACTTTCAGAATCATTTATTCACCTTAAATTTGGGCGATTGAAGCTTTGTCGGAAAATAATGCAGTTGGCAAGACCAAGAGCCTGAACAACATCCTCCTTGACACTTATTGTAGCAGTAGCAGTCAAGGCCAGAACAGGCACAGTTGGGAACTTTTGCTTCAGGATACCTAAACACTGGATGACAACTGAAAAGTTTAGCGTCCATCAAAAGTACCCCAACAAATATGATAACACAAAAAATGCTCGAAAAAGACATTACCTGATAATCAGGCCTGAAATCATGTCCCCACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g09150" ref_strand="+" ref_description="C2_At4g09150">
      <seq>tcccatactgatgagggattggtaatggagaatgaactaattgtgaacgagtcacttcatggtcagcatcttgaatttgctgagtcttcaaaagttgctgataaacacgataatagtattaaggacaaagttagagaaacgatggagaaggctttctgggatagtgtcatggaatccatgaaaaaggatgaaaatagatacaatcgagttgttgatctaatgagagaagcaagagatgaactttgtagtttggctcctcagagttggagacaaaagattagtgaagctatagatatagacatcctctctcagttgttgatcacaggcaaaatcgacatggattatcttcaaaagatcatggatttcacattggtcactttgcagaaactatcctctccagctaaggaggatgagctaaaagcaaattgtcagaagttatttggagaactagctgatatatgtgtggatgggtcagagaattcatttatcctggcactagttaggggtttgcgttttgtactggaagagatgcagctgctgaaacaagaaataagcaaggcaaggattagaatgttggaaccaattctcaagggacctggagctttagattatttgaggaaagctttcaccaagcgttatggtcttccttctatggctatgaccgccttacccttgacatggcaatggcttttatctgtctcagattccatggaccaggaatttaatgaacacaaggaggctctatccagcctgacaagtggacaagatcgtttccttccttctgccacccttagaactggaggatgcttttcagttaaaatgaataaaaatcatgcttcacctttgacctctacagaagctgtagatgaatgccaagaatgcacgggggacaaagttgatttattggtgaggctgggcttgttaaagttggtgtgtgcggtatctggtcttacgcaagaagggttgcctgaaactctgcagctgaatttttttagactaagggctactcaggcaaaaatccaaaagatcatcgtaatagctaccagcattctagtccaaagacaggttcttcagagtatgcaagcagtatcaagcgctgcagatatggataaaattgttcaaggaagcgccaaagctctttctgagctccttgactccaacaatgatgctggtattcaagagatcatctcgacacttgtcaaacctttggagcatggcgacaatggtactgatgagatgaagcttcagcagatcaaggagatcatggcaaggatgttatccaagagcctgcaagctggggatgctatttttgtgcatgtagccagggcaatatatttggctggaaggggagttgtacttggaggaactggaagacaaggaagagaattggctgaagcggctctacggcaggtgggagtagctgttctaattgacgagattgtggatgccacctctgtattggttatggcagcacatgtgacggtgaatgttcatggtccttggtatgcacagttagtagataatatgtgaagctttttaacattcttttgtaaatatcagggcatgtagttattattctgtattatctagctgtgaaactcagtcgagtgttgttattgtagtaatgtgactggaaacctagaaaatgtagatatttgctaaaataagagttaaatataaacgcttgcttgtatatgaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="40904" stop="37619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40604" g_stop="40482" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40481" i_stop="40379" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40378" g_stop="40190" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="312" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40189" i_stop="40093" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40092" g_stop="39871" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="534" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39870" i_stop="39331" i_length="540">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39330" g_stop="39009" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="856" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38900" g_stop="38711" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="1046" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38571" g_stop="37922" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1047" r_stop="1696" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1698" polyA_stop="1720"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="C2_At4g09150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1696</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g09150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40604" e_stop="40482"/>
          <exon e_start="40378" e_stop="40190"/>
          <exon e_start="40092" e_stop="39871"/>
          <exon e_start="39330" e_stop="39009"/>
          <exon e_start="38900" e_stop="38711"/>
          <exon e_start="38571" e_stop="37922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAGGTAGGTGCATTCTTATGTCTTGATTTACTAAACCATAGCACATTTGGTCAGCAAGGGACAGCAGAAACATATATTGATTTGTTCTGCCCTGATGACCTTACAGGACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAGGTACCTCTGTGATCATTAAGGTCATGTGTCTGCTTCTTTTTACTTTTTGATACGAGTAAGTTCTTTATTCATCTAATAATTTGCCTTCCTTTTTTAGTTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAGGTAAATAAATTTCTGAACATATTTCATTTCTTCCCTTGGTGTAAACATCAGAATTATAGACTTTAGCGCACTAACTTTGTGGATAGTTCAGCAAGAAAGCATTGTTTCGAAGTAGCTATAGAGGACCAGGGAATGATATTGGTAGTACTATATAGATGTATATACCGACATTTTTGTTTTCTTGATATTTCTTTCTCTCCTCTTCCTCCTCTCTTTCTATGCTGCAGAATCAGGGGAGCGCAAATCATCTTTAAGACGATGGAATTATAGCATTTATGAAGTCTAGATAGGGACCTATTTCACATTCAAAAGGGAGTGTGTTGGATGCAAGTATATTCTGTTCTGATACAGGGTGTTCTGGTGTTTGAATTCATTTTGAAACATAATTGTTGTACCACATTGCTTAACAAACAAGTCTATAGACTAAAAATTTTCCGCCAGCTATATCTTTGAGGATTGTTGTGCTTCCAATCCTGCTATTTCAGTATTTTTCGTAACCCCAGTATAAGGTGTCTGATATTCCCTCTCTTTTTTGTGCAGCTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAGGTTGGTTTACCTCTTTAAATTCCAAACTGCATCAGATTAATTTGGAGCATTCAGCTGCCTAGAATTCCTGCATCTTTTACCTTATTAGACTCTCTCTCTATTTTTCAGAAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAGGTAACTGTTACTCTACCTCTGTCCCCTCTCCCTCTCTGGGAAGGAAAATAAGAAGGTTCTGAGACGAGAAATGCTCTTATTTTGATATCTTAGTAGCTCTTTGATGATCTATTTACTGACTTGATTTATGATTCTGCAGCATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</genome_strand>
        <mrna_strand>TCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAG.......................................................................................................GACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAG.................................................................................................TTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG............................................................................................................AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG...........................................................................................................................................CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1316" ref_strand="+" ref_description="T1316">
      <seq>agaagacaagctgcaaagggcaaagagacaaagagaagaatatttgatgcagagaggaaaaacacataattccttttgtgacagttatgatgagatacatgaccaggctgacctgctttcaaggaaattagcaaggtgttggaagcagttccttacacgtggaaagacaaccttccaccttgcaaaagcttatactatgctgagtattaacgagaatgcagttaaggtaatgccatttgagcagctagcaatgaagattgaatcgcctaatacactacagagagctaaaggtttgcttgatcggcttgagcttcgcttcaaattgttgcgtgatgttgacagtgtcacaagtaccattggttggggtaatattgatcatcttctcaaccgagtagctacacccaaaaagaaggctacaccaaggagatctctgcgcagtggtggtgcaaaaaaaatagtatccaacttaccagcggtgacaactccagtcaagttgttgaagtatccagttcgaatcgtgctgtgtgcatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="42529" stop="41166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42229" g_stop="42211" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42210" i_stop="42110" i_length="101">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.787" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42109" g_stop="41994" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="135" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41993" i_stop="41866" i_length="128">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41865" g_stop="41466" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="535" r_length="400" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="T1316" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="T1316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42229" e_stop="42211"/>
          <exon e_start="42109" e_stop="41994"/>
          <exon e_start="41865" e_stop="41466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACAAGCTGCAAAGGGTAACAACATATTTACTTGATTCAAGTTAAATAAATTTTAATGATTATGTCCTCTGTATCATCTGACGCTTCCTGTCACTTTGCCACTTGACAATGAACAGGCAAAGAGACAAAGAGAAGAATATTTGATGCAGAGAGGAAAAGCACATAATTCCTTTTGTGACAGTTATGATGAGATACATGACCAGGCTGACCTGCTATCAAGGAAATTAGCAAGGTGAGGGAGCAAAATCTCTTTCATTGTGCAAATTGTCTTAATATAACTGATCTCATTTTCGTAGTTGCACGAAATACTGTTGATAAGATGTACGGAGGTGATGATATCTTGTAAGTATCCTTTTGCAGGTGTTGGAAGCAGTTCCTTACACGTGGAAAGACAACCTTCCACCTTGCAAAAGCTTATACTATGCTGAGTATTAACGAGAATGCAGTTAAGGTAATGCCATTTGAGCAGCTAGCAATGAAGATTGAATCGCCTAATACACTACAGAGAACTAAAGGTTTGCTTGATCGGCTTGAGCTTCGCTTCAAATTGTTGCGTGATGTTGACAGTGTGACAAGTACCATTGGTTGGGGTAATATTGATCATCTTCTCAACCGAGTAGCTACACCCAAAAAGAAGGCTACACCAAGGAGATCTCTGCACAGTCGTGGTGCAAAAAAAATAGTATCGAACTTACCAGCAGTGACAACTCCAGTCAAGTTGTTGAGGTATCCAGTTCGAATCGTGCTGTGTGCATATATG</genome_strand>
        <mrna_strand>AGAAGACAAGCTGCAAAGG.....................................................................................................GCAAAGAGACAAAGAGAAGAATATTTGATGCAGAGAGGAAAAACACATAATTCCTTTTGTGACAGTTATGATGAGATACATGACCAGGCTGACCTGCTTTCAAGGAAATTAGCAAG................................................................................................................................GTGTTGGAAGCAGTTCCTTACACGTGGAAAGACAACCTTCCACCTTGCAAAAGCTTATACTATGCTGAGTATTAACGAGAATGCAGTTAAGGTAATGCCATTTGAGCAGCTAGCAATGAAGATTGAATCGCCTAATACACTACAGAGAGCTAAAGGTTTGCTTGATCGGCTTGAGCTTCGCTTCAAATTGTTGCGTGATGTTGACAGTGTCACAAGTACCATTGGTTGGGGTAATATTGATCATCTTCTCAACCGAGTAGCTACACCCAAAAAGAAGGCTACACCAAGGAGATCTCTGCGCAGTGGTGGTGCAAAAAAAATAGTATCCAACTTACCAGCGGTGACAACTCCAGTCAAGTTGTTGAAGTATCCAGTTCGAATCGTGCTGTGTGCATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g22200" ref_strand="+" ref_description="C2_At4g22200">
      <seq>gcagaacgaatcgccagacgagttgtacataatagtgtcaggggaggtggaaatgcttgaatctgaaatggagaatgagcaaactgtttggaccttcaaatctggagatatgataggagaagtaggagcattttgttgtaggcctcagagctacacgtatcgaaccaaaacactttcacagctcttgaagataagaactagtaatttgattgaagcaatgaaaaccagacaagaagataatatcattatgatcaagaacttccttcagcatcacaagaatctcaaaggcttaaggcttggagatttacttcatggagtggggggagattatggtgatccgaacatgtatgttaacttgctaactgttgctagtacaggtaatgctactttccttgaagaacttctcaaggctaaattagatcctgatatcggagacgctcaaggaagaaccccactgcatctaaagggcacgaagagtgtgtcatggtgcttcttagacatggatgtaacataaacctccgagatgtaaatggtcacaccgcgttgtgggaagctatagcagcaaaacaccattcaacatttcatgtgttgtaccattgggcttctgtctcagatccctacatagctggtgacctcttatgcacagcagctagaaaaaatgacttaacagtgatgaaagaactcctaaaacatggattacaagttgactcaaaggaccgtgatggatcaactgctattcatgttgcattggaagaaaatcttgaagacatggtaaagctacttctaatgaatggagctgagataaatgataagttaaagtacaagctttcttcgatgaacctaagtgacatgctacaaaagcgcgaagtaggacacagagttatggtttccgacacaatggatgaagttgctcaaaaatggcgcgaacaagtgaagcagcacaacacggaaagtactagggatcagtcttcttttagagttagcatatacagaggccatcctgttatcaggagaagaactcattgcagtgaacctggcaaattaattaagcttccaaattcacttgcagagctcaagatcattgcaggtcagaaatttggatttgatgcaacaaatgcagcggttacggatcaagaaggatcagaaattgactcaattgaagtgataagagataatgacaagctgtttatagttgaaggtccaaactgcttgtagcaatacctattagtgacacttaaaagtgtttgttcagatgcatatatccctaaagaactcagaagaaaaatgtatagtggacatacagtcctttcccatttgtgcggcatattgagcacttattgcagttatgtatactcaaacttttggagggaaaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="75332" stop="72881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75032" g_stop="74765" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74674" g_stop="74486" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="457" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74485" i_stop="74336" i_length="150">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.345" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74335" g_stop="74270" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="523" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74269" i_stop="74169" i_length="101">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74168" g_stop="73605" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="1087" r_length="564" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73457" g_stop="73182" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1363" r_length="276" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1370" polyA_stop="1388"/>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="C2_At4g22200" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>1363</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g22200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75032" e_stop="74765"/>
          <exon e_start="74674" e_stop="74486"/>
          <exon e_start="74335" e_stop="74270"/>
          <exon e_start="74168" e_stop="73605"/>
          <exon e_start="73457" e_stop="73182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAGGTTAGTGCAGAATACCCTGTGATATTCCTTTCCCTCTGGACAATTTAGAGCTGAATCTTGATATTCTGCCAATTGTTATGGTAATTGCAGCATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTGGTACGTCCCCTCGTGGCCTACGTTTATACTCAAAAAAAGAAAAGATTTAGTTTTCATTTACATGTTTGTGATGCCAATAACATTGTTTTCTCTTTCAAACAGTTTATGACATGATTATGTTTCTCTTTCTGATGCATCAGCACATTGCAGCATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAGGTAGTCATCCTGAATATGTATTATTGTAAACTTCAGCAAGCTTGAATGATTGACCGGGATAATTGGCTAATCATTGAGTTGATTTGTACCATAAAAAGCAGATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAGGTAAATTTACTTCTACATAGTTCATAATCTTTCAAATCTGACAACATCATATGTCTGCTAAAACGTTAAAACATGAAGAGAATTGGTAATATTATAATTGTTTGGAACTGAGACGTAGTCATGTTAATGTATTTACGTGTTTTACAGGTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTT</genome_strand>
        <mrna_strand>GCAGAACGAATCGCCAGACGAGTTGTACATAATAGTGTCAGGGGAGGTGGAAATGCTTGAATCTGAAATGGAGAATGAGCAAACTGTTTGGACCTTCAAATCTGGAGATATGATAGGAGAAGTAGGAGCATTTTGTTGTAGGCCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATTATGATCAAGAACTTCCTTCAG..........................................................................................CATCACAAGAATCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCGAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACCCCACTG......................................................................................................................................................CATCTAAAGGGCACGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGTAACATAAACCTCCGAG.....................................................................................................ATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCATGTGTTGTACCATTGGGCTTCTGTCTCAGATCCCTACATAGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCAAAGGACCGTGATGGATCAACTGCTATTCATGTTGCATTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAATGATAAGTTAAAGTACAAGCTTTCTTCGATGAACCTAAGTGACATGCTACAAAAGCGCGAAGTAGGACACAGAGTTATGGTTTCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCGAACAAGTGAAGCAGCACAACACGGAAAGTACTAGGGATCAGTCTTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTAAGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG...................................................................................................................................................GTCAGAAATTTGGATTTGATGCAACAAATGCAGCGGTTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTGATAAGAGATAATGACAAGCTGTTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTTTGTTCAGATGCATATATCCCTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACAGTCCTTTCCCATTTGTGCGGCATATTGAGCACTTATTGCAGTTATGTATACTCAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g71220" ref_strand="+" ref_description="C2_At1g71220">
      <seq>ttacaccatttatggtcccaaagcgttttttgctaatatgccaccttctaagacgctgactatgaatctagatgttcctgagccatggcttgttgagcctgtagttgctgtccacgacctagataatatgttgcttgaaaacctaggagagactaggacactacaagcagtgtatgaacttgaagcactagtcctaacaggtcattgctctgagaaggatcatgagcctcctagaggccttcagctaatcctaggcactaaaagtacacctcacttggttgacacacttgtcatggccaatttgggttattggcaaatgaaagcgtttcctggagtttggtacctgcagcttgctcctggtcgaagctcagaactttatgctttgaaagacgatggtgatggtggtcaggagacaactttgtcaaaacggatcattatagatgatttgcgtggtaaacttgttcacatggaagtggttaagaaaaaaggcaaggaacatgagaaactgttggtttcggctgatgatgatagccattcacaagagaagaaaaagggtaaccagaacagttggaattctaatatacttaaatgggcttctggatttattggtggcagtgaccaatcaaagaagagtaaaaacactccagtggtaaccggtggtcgtcatgggaagacgattaacatattctctgttgcttctggacacttatatgaacgcttcctaaaaattatgatactaagtgttctgaagaatactcgacggccagtgaagttctggttcataaaaaactatctgtctcctcagttcaaggatgtaatcccgcatatggctcgagaatatggttttgaatatgaattaattacctacaaatggcctacatggttgcacaaacaaaaggagaagcaaagaatcatttgggcatataaaattctgtttcttgatgtcattttccccctggcgctggagaaggttatcttcgtagatgcagaccaaattgtaagaactgacatgggagaactttatgacatggatttgaaaggacggccccttgcatatacacctttctgtgataacaacagggagatggatggctatcgtttttggaaacaaggcttctggaaggagcatttacgaggaagaccatatcatattagtgctctatatgttgtcgatctgctaaaattccgggagactgccgcgggagataatttacgagtgttttatgagaccctgagcaaggatccaaacagtctttcgaatctggaccaggatcttccaaactatgctcagcatactgtacccatcttttcactcccacaagaatggctttggtgtgagtcatggtgtggtaatgcaacaaagcccaaggcaaaaacaatagacctctgcaataatcccatgacaaaagaacccaagctccagggcgccaagaggatagtggcagagtggccagaacttgactatgaagctagacgcgttactgcaaagatcttgggtgaagactttgatccccaagaccaggcagcacctcctgctgaaacacaaaaaaccattagcgatactccattagaagatgaggaatccaagtcagaactgtgaatttgatgcaaggcaagtattcctggtgcttagacaccccttcttatcggatagattcactttttggtgcatctcagctgccatggtaaaaaggctaagagcagtgtttgttgagatggtcgattgaggcagagagactgagaaaaattaattagccaaggctttaaatgcacgtttacgaaccaattttgcaatttgccccgcccttagtggagaggcagacttgacatgtcatatggatagatagttgcagaagattcttgataatatatatgatttattatgtgaaactctccacagattgggcagttagaaaacaactttcaaggacttttattgttgaaagttggaacattcttcaattttgatatgtaacattgaggtctcacctacattccaataacttgaaaggtttaagaagttaaattactcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="86083" stop="81366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85783" g_stop="85673" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85588" g_stop="85500" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="200" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85319" g_stop="84967" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="553" r_length="353" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84847" g_stop="84752" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="649" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84751" i_stop="84642" i_length="110">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84641" g_stop="84583" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="708" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84582" i_stop="84240" i_length="343">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84239" g_stop="84137" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="811" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84136" i_stop="84039" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84038" g_stop="83880" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="970" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83879" i_stop="83747" i_length="133">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83746" g_stop="83606" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1111" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="83605" i_stop="83508" i_length="98">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="83507" g_stop="83464" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1155" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="83370" g_stop="83256" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1270" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="82552" g_stop="82400" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1423" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114">
            <donor d_prob="0.259" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="82285" g_stop="81655" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1424" r_stop="2044" r_length="621" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="C2_At1g71220" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>2054</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g71220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85783" e_stop="85673"/>
          <exon e_start="85588" e_stop="85500"/>
          <exon e_start="85319" e_stop="84967"/>
          <exon e_start="84847" e_stop="84752"/>
          <exon e_start="84641" e_stop="84583"/>
          <exon e_start="84239" e_stop="84137"/>
          <exon e_start="84038" e_stop="83880"/>
          <exon e_start="83746" e_stop="83606"/>
          <exon e_start="83507" e_stop="83464"/>
          <exon e_start="83370" e_stop="83256"/>
          <exon e_start="82552" e_stop="82400"/>
          <exon e_start="82285" e_stop="81655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGTGTAAGTATTTCAAAAGATTATGGAACTTATGCTAATGGCATATATGCCAGGCTACTTAGTGATGATATCTGCCTAAACTTGCAGCCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAGGTACTTCATTCTCCTCTAGTTGATGTAGTAGGTTACAATATTGGTAAAAGAAGAATAATGGGATGGACTGCAGATGAGCTAATTCCTTAATTGTAACCCTAGATATTGGCTAAAGAAGAACAATGCCATAGTTCCACTGCAAATGATTTAATCGTTGTAGTTTCTAAACTGTTTGATCAGGTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATGAAGATAGCCATTCACAAGAGAAGAAAAAGGTGATGATTACCCTTTATTATTTTGTAAAGCATTTCCCTTTACAGAAAAGAAATTATTATGGGTCAGTAACTCTGAAATATTTACTAAGCTGTAGGAATACTAATTTTTTTGTTCACAGGGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTGGTAATTCCTCAAGTTCCACTCATCAAATATAGTAATCATACACATTAAGTTATCTAGAGAAAGTGTATGGTGATGGTTAAACGATTTTCTTTTCCTTGTCAAAGGAGCAGGTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTTGTGAGTTTCCTGATTTTATTCATCTTTTTCTTTTACCCTGCATTTTGATGCTCCTTAGGTGGTCTCTTCTAATGCTTTACTTTTTTCATTTCTAACAAGAAAAAGAACACAAGAAAGAAACAAAATCTTGTTGTCAATTTAGTTTATTCTTATATATTTTTCACTTCTACTGTTTTATGGCATACCTACTTTCGTGATAATTTATGGACAGTTGTATAGTTTTGGTTAGACTTATACTTTACTTATCTAAGAAGAAGTTTAGGTCAGACTTTAATTTGATCTTCCTAATCTTCTGCTTCTATTGTAGTTTCAACATCTAACAGCTTTAAGATGTACATTGCAGATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAGGTATGCTAACTTGCGTTCTTCACCTTAATTCTTTTTAGCAGCTTGTTTCAATCTATAAAGTTTACACGTTGAACTAATGAGATACTTTGTTCTTTTAGGATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAGGTATTCATCCCCCCCCCCCCCTCCCTTCCCCCCATTATTTTTTTGAATTCAATACATTATCTTTACTAGATCTTGTATTTTTTTGGTTGTGAGCTTATAGTTAATTGAACTTCTGTAATGTGTTAACCTGCAGGTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTGTGATAACAACAGGGAGATGGATGGCTATCGTTTTTGGAAACAAGTATCGGCATTTCTTTCTATTCACTTCTCTTTCTGCTCACTCATTGTCCTTTTAACTGACTAAGCTGATCACTAATGTTCTTTGTATTTATTGAATAGGGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAGGTATCCTTACCTCTTATATGTTGAATCACATATATAATAATTGTTAGTTATTTGAAAAGTGAACAAGCTTTCCATGGTGAATGCAATCTGCAGTGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAGGCAAGTGAATGCTTTCATGTGCAATCATCATATCATTCTACAACGCTGGCTCATCTTAAGTATTTCCTTTTTTGTGTTTTGACTTACTTGAAGCAAGAATGTGTTGGTTCTGAGGGTACACAATTTCTTTGCATTGTACTTGGTGCTTTCTGCTAGTGTACGTACTGGAAGTAGATTCTTCATTCTTTTATAATTTTATAATCGGCTATCTTTCCAGTTTGATTTCTTCATTTTAGATTAGAGAACTTCAGAAAATATAAAAAACTATTATTTATAAATGGAGATAGTTAAACATGATTATCCTGTCCTAGCGGAGGCCTGATATGCCTTCTTTATATTTGAATTTTTTCGTCCAGCAACTTAAAACTAGTAAGTCTTGCTGTTGCATAGTGATTACAGTGGTTATATTCAGTATGTATTAATTGGTAAATGGACGACAACCAAGTAGACCTGGCATAAGTTATGTCAATGACAACTTACACCATGCATATGTTATGGTAAAGTTCGGAATCTGTCCAAGCATTTCAGGGAAGTTCCATAGTTTACAATCAATATACTTTCCTGATAAAATTTCTCTGGAACCTACATTTCAATATAAGTGGTCAAGACATTGCCACCAAGCTTTAAGGTTTCCATAATATGATGATTATATTGCTCTTTACTTTTATATTGTGTTATACTGACAAGAATCCTTGTATCTCAGGATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAGGTAATGACTGAGCTGCCTCGCCGTGTCAATGGTCTCTTTCCATGAGAAAACATCTTCGACTTGCAGTTTGTCCTTTGTATCATTAGCTCCATTTTTTTCTTGTTTATCTTGTAGGGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGC--AGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATTACTACATCCCTCCCCAA</genome_strand>
        <mrna_strand>TTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTGACTATGAATCTAGATGTTCCTGAGCCATGGCTTGTTGAGCCTGTAGTTGCTGT....................................................................................CCACGACCTAGATAATATGTTGCTTGAAAACCTAGGAGAGACTAGGACACTACAAGCAGTGTATGAACTTGAAGCACTAGTCCTAACAG....................................................................................................................................................................................GTCATTGCTCTGAGAAGGATCATGAGCCTCCTAGAGGCCTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTATTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAACTTTATGCTTTGAAAGACGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGGTTAAGAAAAAAGGCAAGGAACATGAGAAACTGTTGGTTTCGGCTGATGATGATAGCCATTCACAAGAGAAGAAAAAG.......................................................................................................................GGTAACCAGAACAGTTGGAATTCTAATATACTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG..............................................................................................................GTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTT.......................................................................................................................................................................................................................................................................................................................................................ATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTGAAGAATACTCGACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATCTGTCTCCTCAGTTCAAG..................................................................................................GATGTAATCCCGCATATGGCTCGAGAATATGGTTTTGAATATGAATTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTGTTTCTTGATGTCATTTTCCCCCTGGCGCTGGAGAAG.....................................................................................................................................GTTATCTTCGTAGATGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCCCTTGCATATACACCTTTCTGTGATAACAACAGGGAGATGGATGGCTATCGTTTTTGGAAACAA..................................................................................................GGCTTCTGGAAGGAGCATTTACGAGGAAGACCATATCATATTAG.............................................................................................TGCTCTATATGTTGTCGATCTGCTAAAATTCCGGGAGACTGCCGCGGGAGATAATTTACGAGTGTTTTATGAGACCCTGAGCAAGGATCCAAACAGTCTTTCGAATCTGGACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTCCAG..................................................................................................................GGCGCCAAGAGGATAGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATTAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCAAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATAGATTCACTTTTTGGTGCATCTCAGCTGCCATGGTAAAAAGGCTAAGAGCAGTGTTTGTTGAGATGGTCGATTGAGGCAGAGAGACTGAGAAAAATTAATTAGCCAA---GGCTTTAAATGCACGTTTACGAACCAATTTTGCAATTTGCCCCGCCCTTA---G-T-G--GAGAGGCAGACTTGACATGTCATATGGATAGATAGTTGCAGAAGATTCTTGATAATATATATGATTTATTATGTGAAACTCTCCACAGATTGGGCAGTTAGAAAACAACTTTCAAGGACTTTTATTGTTGAAAGTTGGAACATTCTTCAATTTTGATATGTAACATTGAGGTCTCACCTACATTCCAATAAC-TTGAAAGGTTTAAGAAGTTAAATTACT-CAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g60990" ref_strand="+" ref_description="C2_At1g60990">
      <seq>gtgaaattccaagagagatggcgtctctctactctgcaaacttgttatttccttctctctttttttcttcttcttcttcatcttcttcttcatccgttgttactccactagcttaccggccctacgatgcgtcgccggcgaagattaatcgacgcctttcttcttctttttcttctgctgcgctgccattcgatctttctcctcctcccatcgaccacgacctcctcgatactatgacaattgctggggcaaaggtatcagaagatggggtaataggaacattcgataatgacgaggaggcattagatgctgttgagaatggtgtcgcggttgtggatctttcacactatggcaggataagagttagtggagaagacagggttcagtttcttcacaaccaaagtactgctaactttgaaattcttcatgaggggcagggatgtgacactgtttttgtgacaccaactgctagaaccatcgatattgcccatgcctgggttatgaaaacggcaatcacattggtggtctctccagtgaccagggaaagaataactcatatgcttaagaagtatgtctggaactgccatgcttttgctctggattgctgccgctcttgcttacctatgcttgaatagttttttggggcctaaccagttgttttacattacttacctgctgatttaacaatatgtcatacttctattcataggtacatattctttgcagacaaagttgaaattcaagatattaccgagcaaacgtccttgttcgtagtagtagggcctacaagtaacaaaataatggaggctctgagtcttgctgacatagttggacaaccatatgggtcgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="117521" stop="114462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117156" g_stop="117010" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="227" r_length="147" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116332" g_stop="116231" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="329" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115988" g_stop="115955" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="363" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115553" g_stop="115480" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="437" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115479" i_stop="115393" i_length="87">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115392" g_stop="115327" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="503" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115217" g_stop="114924" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="797" r_length="294" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107">
            <donor d_prob="0.771" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="114816" g_stop="114762" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="852" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="C2_At1g60990" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g60990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117156" e_stop="117010"/>
          <exon e_start="116332" e_stop="116231"/>
          <exon e_start="115988" e_stop="115955"/>
          <exon e_start="115553" e_stop="115480"/>
          <exon e_start="115392" e_stop="115327"/>
          <exon e_start="115217" e_stop="114924"/>
          <exon e_start="114816" e_stop="114762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTCGTTAGTACCAAATTCTTAAACTTGTTTCTTAGTATTCTGAGTTGTTAATTCTTGATTTTTTGGAAGTTAACGTGATTCTGGGCTTTCACAAGTACCAAATTAAATAGACACAACCTGCTTTTTATTGTTTCTGAGTTGGTAATTCTTGATTCTTAGAGTGTGGGTTTTGATAAATTCCAAATTCTTATATTTTCTTAATCTTGAAAGTCAGTTGGCTGTAGCATGTGTGAAGAAGGAAGACTGATTGTGGACTTTTGTGAGACGTAATCATTTCTTTCCTAATCTTTTTGATGTAGAATTGTCCTGTTCAATGTACTATCTTGCTGGGTAAAAATAATTGAACTATTTGGATTATCAATCCTAAAGCTTTGAAAATAAATTTTCCTTTCTGAAGGAAAAATCAAAACAAATACTTAATGTAATGGGGGTGGGGTAGACAAGTCTTATTGGCTATGGGTGCCCTCCATCCACCCCTGCTTGGAATGTCTCACTTCAGTAGGCAGTTAAGACTTAAAAAATCTTTTTTCTGTACGATGAGTGTACACGAAGGACATGTTACCTCTGCTAAATGTTTCCTGATGATCAAGGGAAGGATGAGAGTCACTGACCTGATGTTTCTACATGCTTTCATTGTTGGTCTCCTTAGATTTGGCTTGTTTAACTTTTTCTTCCTGCAGGATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCGGTGTGTATCTAGCTTGATTCAGGTTTTCTTGGTAATTTTAGTTATTTTTTCCTATTAAAAATCTGCATGTCATATAAATTTCATCTGTTGATTAAAAGACGTGTAATGGTCCAACTTTCCTATCACATGTTGTATATTTTACTGCCATATCTGGAATGAGCCTGGCCTTTTAAGGGAACTTGTATACTGCTCATCTTAGTCTTTCAAAGTGTGATCTGATGGCATCATTCAATTTGTTCTAGGTTGTGGATCTTTCACACTATGGCAGGATAAGAGGTAAATCCATCCACACATTTTCATTGTGAAAATGATTCTGTTTTATTTTATAAGACAACTCCAAGTTTAATCTGTGAATAATCTATTGACGTGGAGGAATAGAGGTTAGGTTAGTTTTTAATGTATCTTAAAGTAAGTCCATTATCCATACTATTCTTCTAATAAAATAGTAAATTCTTCCTACTTAAACAATTCTGTGGAATGTGGTTGTTTGCTTATTTCCTAGTGCGAGTCATGTGGATAATGGATGTGAAAATTACTTTTTACGACTTGTTCTTGTGCTAGTGATGTATTGTGGACTAACTGGATATAAGTTTTTCTACTTCTTTGAATTGTTTTGGAGGTTACTTATTCATAGTTGTTATTTCAGCTATCTATGTCTGTCTTTTTATTTCACACAGTTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAGGTATTGATTCGGTTTCCACAACTCTAGGTTGATGAAAATAGCAAACTCCACTAATGTGCTTTTATATTTCATGCCTGGGAATTGTAGGGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATGGTAATCCTTCACAGCTCCCTTGCTGAGAATTGGTTTCTTGTGCCTAAGCTTTCATATGTTAAGACTATTATTTAAGTACTATTATTGAAGTGGACATTATATTTCACAGAAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAAGTATGTATGGAACTGCCATGGTTTTGCTCTGAATTGCTGTCACTCTTGCTTACCTATGCTTCAATAGTTTTTTGGGGCCTAACCAGTTATTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAAGTAAGAACTGTGTCTAGTTAATCATCAAACAAGGTGATAATATTTGTTATCTTCTTACTTCACTTAAAAGGTACAACTAACTTTTGTATGTAATGGCTTACAAACAGATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATA</genome_strand>
        <mrna_strand>TCTTCTTCTTCATCCGTTGTTACTCCACTAGCTTACCGGCCCTACGATGCGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGAACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTCGCG..................................................................................................................................................................................................................................................GTTGTGGATCTTTCACACTATGGCAGGATAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAG.......................................................................................GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG.............................................................................................................AAAACGGCAATCACATTGGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTAAGAAGTATGTCTGGAACTGCCATGCTTTTGCTCTGGATTGCTGCCGCTCTTGCTTACCTATGCTTGAATAGTTTTTTGGGGCCTAACCAGTTGTTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGCAAACGTCCTTGTTCGTAGTAGTAGGGCCTACAAGTAACAAA...........................................................................................................ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGGTCGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g27640" ref_strand="+" ref_description="C2_At4g27640">
      <seq>aagcccttggcttatttgctttacatacaaagggttcttatgcaccttacttggaagagtcatttaagattttagtgaggcattctagctatttccatgaggacgttcgaatgcaagccattatttctctcaaatatattttgatagctacacaagcagcattgcaaggtcataatgagggaatgacaaagacaaaagaagttcttgatactgtgatgaaaatttatataaagacaatgattgaagatgatgacaaagaagttgttgcgcaagcttgtatggctgttgctgacatcatgaaggattttggttacatggctgttgagccctatatcactcagcttgttgaggcaactgtagttctgttacgagagcagtctgcgtgtcagctcgtagaatcagatagtgaagttgatgatgacgacactgaacatgacgaagtgctaatggatgctgtttctgatctcctccctgcattcgcaaaggccatgggttctcattttgctccaatcttttcaaagctgttcgaacctttgatgaaatttgcaaaagcatcgcgcccatctcaagatcggaccatggtcgttgcaacccttgcagaagttgctcaacacatgggtgctcctattggtggctatattgatactgtgatgtccctgggtacttaaagaattagcttcagcggatgctacaaaccgaaggaatgcagcattttgtgttggcgagttgtgcaaaaatggtggtgatgctgtttgaaatattatggagatgcccttacgtggccctttaccccaattatttgggcgaagcctgagcccagataatgcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0057J16-9N7Ze/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0057J16.1" temp_strand="-" temp_description="C01HBa0057J16.1  AC238510.2 htgs_phase:2 submitted_to_sgn_as:C01HBa0057J16 upload_account_name:manual">
        <position start="124360" stop="120873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124060" g_stop="124015" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124014" i_stop="123930" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123929" g_stop="123841" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="135" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123840" i_stop="123510" i_length="331">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123509" g_stop="123469" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="176" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123468" i_stop="122674" i_length="795">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122673" g_stop="122643" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="207" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122642" i_stop="122259" i_length="384">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122258" g_stop="122136" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="330" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122135" i_stop="122048" i_length="88">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122047" g_stop="121830" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="548" r_length="218" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121829" i_stop="121712" i_length="118">
            <donor d_prob="0.790" d_score="0.96"/>
            <acceptor a_prob="0.373" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121711" g_stop="121616" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="644" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121615" i_stop="121497" i_length="119">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121496" g_stop="121384" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="757" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="121383" i_stop="121240" i_length="144">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="121239" g_stop="121173" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="831" r_length="74" r_score="0.776"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0057J16.1" gen_strand="-" ref_id="C2_At4g27640" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0057J16.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g27640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124060" e_stop="124015"/>
          <exon e_start="123929" e_stop="123841"/>
          <exon e_start="123509" e_stop="123469"/>
          <exon e_start="122673" e_stop="122643"/>
          <exon e_start="122258" e_stop="122136"/>
          <exon e_start="122047" e_stop="121830"/>
          <exon e_start="121711" e_stop="121616"/>
          <exon e_start="121496" e_stop="121384"/>
          <exon e_start="121239" e_stop="121173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCTTGGCTTATTTGCTTTACATACAAAGGGTTCTTATGCACCGTATCCTTTTCTCAATACATACATAAAGCTTATCTTGTATGACATTGATGCTAATGGTTTTCTGGATTCCTTAATGTATTTCAAGCTACTTGGAAGAGTCATTTAAGATTTTAGTGAGGCATTCTAGCTATTTCCATGAGGACGTTCGATTGCAAGCCATTATTTCTCTCAAATGTGAGTAGCAAGGGGCTGCTTTCTCTGTTGATTTTTTATCTTAATGTTAGCATTTTGCTGTATGAATGCTTGACCTGGGTATATATGTTTGTATGTTGTATAACATGTCAGTCTGTCTATAGCTATTTCATTTGTTATTACCAGCTTGATTTTGAATATCTCTATGTGATTAAGTATACAGGATTTATGATATAAATATATGATACTTACTTTAGCTTTTAAATTTAAATACTGTGGTAATTTATACGATGATGCTATTTTATTTTCAAATTTACTATTGCAAGCTAAAGCTAGTCCATAAGTGCTCTTTTCTGGATCTCTTTGATTGCAGATATTTTGATAGCTACACAAGCAGCATTGCAAGGTCATAATGTGAGTAATGATCTATCTCGGTCCATCATTGTTGTATTTAGTTTATCATTTATAATTTTGCATGCAGTTGATGCTTTTTGTCGATCAGCCTTTTCCGATAGATGTTTGACAGCTGTAAAGTTCTAGTGATGCATCTGCTGTGATAACTTATGAATTTTCATATTTGTTGTGTCAATCTGCTGAAGATTTGTGTTAATTATATGTTATTCTTAAGTAGTGCTAGAGGTTATGTGCCATAAGCCTGATACACAACACATTTTTTCTGTGTTTTTTTCCGACGGGCTCTTATTTGAGTTAGTTTGAGTTTGCTTAGCTTTCTCCTTGCTATTCTGCGTTAAAACTGAGGGGGTTATCTAGATTACAAAAAATATTAGTAGAAAAAACCCACAATGCTCAACAAAGATCCTAGGAATCTATATGTGGTTAGTTTGTGTTGATAGAGTGTTCCATTTCCTTGACAGCAGTGTCTTGCAAGACCTTACTTCAAGAACTACTCCCCACCCTCAAAATAAATGTAGCAGTTGAGGTATTGAATGACTACTTTTTGTGCTATTAAATATGTAGTGATTCTGTCAAAGCTTGTAGTAATGCACCACAAGTCCGGGATAGAAACGAGCATCTAAAACTCATTTAGTATAAGTTGAGCCAATGAAGTAATTGTGCTGCCTTAGGCTGAAGTTCACACATTTTCCGATTTAATTAGCATGTTCATTTCTTTCAATTAAATGAGTGTGATGTATGATAATATCTCTGATGTTAATGACTGCTTCATTTCTTTTTTCTCCTCTTTGACAGGAGGGAATGACAAAGACAAAAGAAGTTCTTGGTATGATTTATCTTCTTCGTGTCAGTCATATAATCTGTTACAAAAATATCATTGGCATAATACATATATTGGACCCTAAACTTGACTTCAAATTTTAACTTTGACCTCAAACTTTCATAATGTACAAATAGGCACTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTACATGGCACAATACACGTAGGACACCACGTGGGACAAAAAATGACATGCAGGACATGTGTGTTTATTTGTTCAACTTTATACAAGTTTAAGTATCTCTTTGTGCACATCCAAAGTTGAAGGGCATAAATGTGATTTGAAGCCAAGTTAAATGACACATTTATGTATTATGCCTATATCATTTTAGTGCCTAAATGTTTTGCTTTGCAGATACTGTGATGAAAATCTATATAAAGACAATGATTGAAGATGATGACAAAGAAGTTGTTGCGCAAGCTTGTATGGCTGTTGCTGACATCGTGAAGGATTTTGGTTACATGGCTGTTGAGCCCTGTAAGTGTGCACATTTTGGATTCCTTCAGGTCCTCCAGTAGTCATTAAAATTAAATTTAGGATTAACTTGTTTTTCCCATCTTTATAGATATCACTCAGCTTGTTGAGGCAACTGTAGTTCTGTTACGAGAGCAGTCTGCATGTCAGCTCGTAGAATCAGATAGTGAAGTTGATGATGATGACACTGAACATGACGAAGTGCTAATGGATGCTGTTTCTGATCTCCTCCCTGCATTCGCGAAGGCCATGGGTTCTCATTTTGCTCCAATCTTTTCAAAGCTGTTTGAACCTTTGATGAAATTTGCTGTAAGTTTGGGACCCCCCTCCCCGGCCTTACAATTTTTCTGTCAAGTTCTTTTCTGTTCTTTGCTTTTGAGATTAGCTTTAGTCCCAGTGTTTCATGCCATAACCTCTGCAATTGCAGAAAGCATCGCGCCCATCTCAAGATCGGACCATGGTCGTTGCAACCCTTGCAGAAGTTGCTCAACACATGGGTGCTCCCATTGGTGGCTATATTGATGTAAGATTTTAAAAACTAGTTAATTGATTCTTTTCTTCTCCTCTACAACACACACACACACACACACACACTTTTTGATAGTTCTGCAACTGAATTGGGGAATATTAATCCTTCTTCAGACTGTGATGTCCCT-GGTACTTAAAGAATTAGCTTCAGCGGATGCTACAAACCGAAGGAACGCAGCATTTTGTGTTGGCGAGTTGTGCAAAAATGGTGGTGATGCTGCTTTGAAGTATGCTTTCGGTTGCATACCTTGTTTACCATCTACTTCTGTTCCTAATATACGTTCTGAGTTTGTGGGGTTGTAGCCACTGATTATTTACCATTTACCTTCTTTGTTGGCACATCTAAATCTGAGTTATTCACTTTATTCTAGATATTATGGAGATG-CCTTACGTGG-CCTTTA-CCC-ATTGTTT-GGCGAAG-CTGAG-CCAGATAATGCAGTG</genome_strand>
        <mrna_strand>AAGCCCTTGGCTTATTTGCTTTACATACAAAGGGTTCTTATGCACC.....................................................................................TTACTTGGAAGAGTCATTTAAGATTTTAGTGAGGCATTCTAGCTATTTCCATGAGGACGTTCGAATGCAAGCCATTATTTCTCTCAAAT...........................................................................................................................................................................................................................................................................................................................................ATATTTTGATAGCTACACAAGCAGCATTGCAAGGTCATAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAATGACAAAGACAAAAGAAGTTCTTG................................................................................................................................................................................................................................................................................................................................................................................................ATACTGTGATGAAAATTTATATAAAGACAATGATTGAAGATGATGACAAAGAAGTTGTTGCGCAAGCTTGTATGGCTGTTGCTGACATCATGAAGGATTTTGGTTACATGGCTGTTGAGCCCT........................................................................................ATATCACTCAGCTTGTTGAGGCAACTGTAGTTCTGTTACGAGAGCAGTCTGCGTGTCAGCTCGTAGAATCAGATAGTGAAGTTGATGATGACGACACTGAACATGACGAAGTGCTAATGGATGCTGTTTCTGATCTCCTCCCTGCATTCGCAAAGGCCATGGGTTCTCATTTTGCTCCAATCTTTTCAAAGCTGTTCGAACCTTTGATGAAATTTGCA......................................................................................................................AAAGCATCGCGCCCATCTCAAGATCGGACCATGGTCGTTGCAACCCTTGCAGAAGTTGCTCAACACATGGGTGCTCCTATTGGTGGCTATATTGAT.......................................................................................................................ACTGTGATGTCCCTGGGTACTTAAAGAATTAGCTTCAGCGGATGCTACAAACCGAAGGAATGCAGCATTTTGTGTTGGCGAGTTGTGCAAAAATGGTGGTGATGCTG-TTTGAA................................................................................................................................................ATATTATGGAGATGCCCTTACGTGGCCCTTTACCCCAATTATTTGGGCGAAGCCTGAGCCCAGATAATGCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8811" PGL_stop="8247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8811" e_stop="8441"/>
            <exon e_start="8353" e_stop="8247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.968"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="8811" e_stop="8441" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8440" i_stop="8354" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="8353" e_stop="8247" e_length="107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8811" stop="8441"/>
              <exon start="8353" stop="8247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCATTCCTTCGCTTGCTACCCTAACATATTTACGAAGTTTGCACCTGCTATGAAAAAAAACTACACTCGATTCTCATATGAATTTCAATTGTTAGATTCCAGTTCTGTTGAGTCCCGGCGTAGCTTGTATCAAAAGCTTTCATCAGTATAGGTTTTTGCACGTCAAGGCGATGCAAGACGGTAAGTTTGCCACGCCTACGTCGTGCGATGAGTCCAAAGTTAGAGTTCCTCATGTTCTGACGGTTGCCGGGTCCGATTCCGGCGCCGGCGCCGGAATTCAAGCGGATATCAAGGCTTGTGCTGCTCGGGGAGTGTATTGCTCCACTGTGATCACGGCTGTTACTGCTCAAAATACCGTAGGGGTTCAG : GGTGTGAACATTGTGCCGGAGGATTTTGTAGCAGAGCAGTTGAGATCGGTCCTTTCCGATATGCCGCCCAATGTTGTAAGTATATCATGTTAGTGTCTTGATGTTCA</gDNA_template>
            <first_frame> I  P  F  L  R  L  L  P  *  H  I  Y  E  V  C  T  C  Y  E  K  K  L  H  S  I  L  I  *  I  S  I  V  R  F  Q  F  C  *  V  P  A  *  L  V  S  K  A  F  I  S  I  G  F  C  T  S  R  R  C  K  T  V  S  L  P  R  L  R  R  A  M  S  P  K  L  E  F  L  M  F  *  R  L  P  G  P  I  P  A  P  A  P  E  F  K  R  I  S  R  L  V  L  L  G  E  C  I  A  P  L  *  S  R  L  L  L  L  K  I  P  *  G  F  R :   V  *  T  L  C  R  R  I  L  *  Q  S  S  *  D  R  S  F  P  I  C  R  P  M  L  *  V  Y  H  V  S  V  L  M  F  </first_frame>
            <second_frame>  S  H  S  F  A  C  Y  P  N  I  F  T  K  F  A  P  A  M  K  K  N  Y  T  R  F  S  Y  E  F  Q  L  L  D  S  S  S  V  E  S  R  R  S  L  Y  Q  K  L  S  S  V  *  V  F  A  R  Q  G  D  A  R  R  *  V  C  H  A  Y  V  V  R  *  V  Q  S  *  S  S  S  C  S  D  G  C  R  V  R  F  R  R  R  R  R  N  S  S  G  Y  Q  G  L  C  C  S  G  S  V  L  L  H  C  D  H  G  C  Y  C  S  K  Y  R  R  G  S   : G  C  E  H  C  A  G  G  F  C  S  R  A  V  E  I  G  P  F  R  Y  A  A  Q  C  C  K  Y  I  M  L  V  S  *  C  S </second_frame>
            <third_frame>   P  I  P  S  L  A  T  L  T  Y  L  R  S  L  H  L  L  *  K  K  T  T  L  D  S  H  M  N  F  N  C  *  I  P  V  L  L  S  P  G  V  A  C  I  K  S  F  H  Q  Y  R  F  L  H  V  K  A  M  Q  D  G  K  F  A  T  P  T  S  C  D  E  S  K  V  R  V  P  H  V  L  T  V  A  G  S  D  S  G  A  G  A  G  I  Q  A  D  I  K  A  C  A  A  R  G  V  Y  C  S  T  V  I  T  A  V  T  A  Q  N  T  V  G  V  Q  :  G  V  N  I  V  P  E  D  F  V  A  E  Q  L  R  S  V  L  S  D  M  P  P  N  V  V  S  I  S  C  *  C  L  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8713" stop="8441"/>
                    <exon start="8353" stop="8261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPVLLSPGVACIKSFHQYRFLHVKAMQDGKFATPTSCDESKVRVPHVLTVAGSDSGAGAGIQADIKACAARGVYCSTVITAVTAQNTVGVQGVNIVPEDFVAEQLRSVLSDMPPNVVSISC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20093" PGL_stop="20547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20093" e_stop="20547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20093" e_stop="20547" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20093" stop="20547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG245-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGATGGTTGAGACTATAATAACTTCATCTGTTTCTAAGAAACTCTACTTTAATGCTGTGTTTTCATGGTATGTACACATTGCAGGTTAACATACCTGCTGCTTATCTTAGTTCCAACATGGAGTGGACTGAGCAACAGGAGATACTTAGAGAGCTCAATTCAGATGGTTGCAAATACAAATTTTTATATGTTACCCCAGAGAAAGTTGCCAAGTGCGTACTCGTAATTTCATTTGGTAACATTTGAAACTTATGGTAACTTCTCTGAATGAAGTGTCTGATATTTAAGAGTAAAGACAAATCTTGAAGTTCCTTGTCACTTCCTTATTCCTTGGCTGATCTGTTATTCTGGTGCAACTATGAAATAGTGAGATGCTAGCAGGAAAAATAAGTTCCTTACTGGAGGCATGAAAGCTTTCTGAAGGTGTGATGGATAAGCTCCTATTAATGAAC</gDNA_template>
            <first_frame> *  *  W  L  R  L  *  *  L  H  L  F  L  R  N  S  T  L  M  L  C  F  H  G  M  Y  T  L  Q  V  N  I  P  A  A  Y  L  S  S  N  M  E  W  T  E  Q  Q  E  I  L  R  E  L  N  S  D  G  C  K  Y  K  F  L  Y  V  T  P  E  K  V  A  K  C  V  L  V  I  S  F  G  N  I  *  N  L  W  *  L  L  *  M  K  C  L  I  F  K  S  K  D  K  S  *  S  S  L  S  L  P  Y  S  L  A  D  L  L  F  W  C  N  Y  E  I  V  R  C  *  Q  E  K  *  V  P  Y  W  R  H  E  S  F  L  K  V  *  W  I  S  S  Y  *  *   </first_frame>
            <second_frame>  N  D  G  *  D  Y  N  N  F  I  C  F  *  E  T  L  L  *  C  C  V  F  M  V  C  T  H  C  R  L  T  Y  L  L  L  I  L  V  P  T  W  S  G  L  S  N  R  R  Y  L  E  S  S  I  Q  M  V  A  N  T  N  F  Y  M  L  P  Q  R  K  L  P  S  A  Y  S  *  F  H  L  V  T  F  E  T  Y  G  N  F  S  E  *  S  V  *  Y  L  R  V  K  T  N  L  E  V  P  C  H  F  L  I  P  W  L  I  C  Y  S  G  A  T  M  K  *  *  D  A  S  R  K  N  K  F  L  T  G  G  M  K  A  F  *  R  C  D  G  *  A  P  I  N  E  </second_frame>
            <third_frame>   M  M  V  E  T  I  I  T  S  S  V  S  K  K  L  Y  F  N  A  V  F  S  W  Y  V  H  I  A  G  *  H  T  C  C  L  S  *  F  Q  H  G  V  D  *  A  T  G  D  T  *  R  A  Q  F  R  W  L  Q  I  Q  I  F  I  C  Y  P  R  E  S  C  Q  V  R  T  R  N  F  I  W  *  H  L  K  L  M  V  T  S  L  N  E  V  S  D  I  *  E  *  R  Q  I  L  K  F  L  V  T  S  L  F  L  G  *  S  V  I  L  V  Q  L  *  N  S  E  M  L  A  G  K  I  S  S  L  L  E  A  *  K  L  S  E  G  V  M  D  K  L  L  L  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20117" stop="20341"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLFLRNSTLMLCFHGMYTLQVNIPAAYLSSNMEWTEQQEILRELNSDGCKYKFLYVTPEKVAKCVLVISFGNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21619" PGL_stop="21130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21619" e_stop="21130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21619" e_stop="21130" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21619" stop="21130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG245-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTGCTACTCTCTCACAATCCATTCTAGAAAGACAATAAATTATCCCGCATTGATCAAAATGATTATTCTTTATAAAAGTGCCAATGTCTTCCAAACACTTCTTTGTCTTTGGGATAACAGTATATCTGCAAATGATGAAAAGTTCCACAATCATGTATTTGTAAGGCCAAAAAAGGTATGGTACCACTACACTTTCAGAATCATTTATTCACCTTAAATTTGGGCGATTGAAGCTTTGTCGGAAAATAATGCAGTTGGCAAGACCAAGAGCCTGAACAACATCCTCCTTGACACTTATTGTAGCAGTAGCAGTCAAGGCCAGAACAGGCACAGTTGGGAACTTTTGCTTCAGGATACCTAAACACTGGATGACAACTGAAAAGTTTAGCGTCCATCAAAAGTACCCCAACAAATATGATAACACAAAAAATGCTCGAAAAAGACATTACCTGATAATCAGGCCTGAAATCATGTCCCCACTGGCT</gDNA_template>
            <first_frame> L  F  C  Y  S  L  T  I  H  S  R  K  T  I  N  Y  P  A  L  I  K  M  I  I  L  Y  K  S  A  N  V  F  Q  T  L  L  C  L  W  D  N  S  I  S  A  N  D  E  K  F  H  N  H  V  F  V  R  P  K  K  V  W  Y  H  Y  T  F  R  I  I  Y  S  P  *  I  W  A  I  E  A  L  S  E  N  N  A  V  G  K  T  K  S  L  N  N  I  L  L  D  T  Y  C  S  S  S  S  Q  G  Q  N  R  H  S  W  E  L  L  L  Q  D  T  *  T  L  D  D  N  *  K  V  *  R  P  S  K  V  P  Q  Q  I  *  *  H  K  K  C  S  K  K  T  L  P  D  N  Q  A  *  N  H  V  P  T  G  </first_frame>
            <second_frame>  F  S  A  T  L  S  Q  S  I  L  E  R  Q  *  I  I  P  H  *  S  K  *  L  F  F  I  K  V  P  M  S  S  K  H  F  F  V  F  G  I  T  V  Y  L  Q  M  M  K  S  S  T  I  M  Y  L  *  G  Q  K  R  Y  G  T  T  T  L  S  E  S  F  I  H  L  K  F  G  R  L  K  L  C  R  K  I  M  Q  L  A  R  P  R  A  *  T  T  S  S  L  T  L  I  V  A  V  A  V  K  A  R  T  G  T  V  G  N  F  C  F  R  I  P  K  H  W  M  T  T  E  K  F  S  V  H  Q  K  Y  P  N  K  Y  D  N  T  K  N  A  R  K  R  H  Y  L  I  I  R  P  E  I  M  S  P  L  A </second_frame>
            <third_frame>   F  L  L  L  S  H  N  P  F  *  K  D  N  K  L  S  R  I  D  Q  N  D  Y  S  L  *  K  C  Q  C  L  P  N  T  S  L  S  L  G  *  Q  Y  I  C  K  *  *  K  V  P  Q  S  C  I  C  K  A  K  K  G  M  V  P  L  H  F  Q  N  H  L  F  T  L  N  L  G  D  *  S  F  V  G  K  *  C  S  W  Q  D  Q  E  P  E  Q  H  P  P  *  H  L  L  *  Q  *  Q  S  R  P  E  Q  A  Q  L  G  T  F  A  S  G  Y  L  N  T  G  *  Q  L  K  S  L  A  S  I  K  S  T  P  T  N  M  I  T  Q  K  M  L  E  K  D  I  T  *  *  S  G  L  K  S  C  P  H  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21619" stop="21398"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFCYSLTIHSRKTINYPALIKMIILYKSANVFQTLLCLWDNSISANDEKFHNHVFVRPKKVWYHYTFRIIYSP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21339" stop="21130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTSSLTLIVAVAVKARTGTVGNFCFRIPKHWMTTEKFSVHQKYPNKYDNTKNARKRHYLIIRPEIMSPLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40604" PGL_stop="37922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40604" e_stop="40482"/>
            <exon e_start="40378" e_stop="40190"/>
            <exon e_start="40092" e_stop="39871"/>
            <exon e_start="39330" e_stop="39009"/>
            <exon e_start="38900" e_stop="38711"/>
            <exon e_start="38571" e_stop="37922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.440" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40604" e_stop="40482" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.440">
            <gDNA_intron_boundary i_start="40481" i_stop="40379" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40378" e_stop="40190" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.947">
            <gDNA_intron_boundary i_start="40189" i_stop="40093" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40092" e_stop="39871" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39870" i_stop="39331" i_length="540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39330" e_stop="39009" e_length="322"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.908">
            <gDNA_intron_boundary i_start="39008" i_stop="38901" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38900" e_stop="38711" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38710" i_stop="38572" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38571" e_stop="37922" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40604" stop="40482"/>
              <exon start="40378" stop="40190"/>
              <exon start="40092" stop="39871"/>
              <exon start="39330" stop="39009"/>
              <exon start="38900" stop="38711"/>
              <exon start="38571" stop="37922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g09150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCATACTGATGAGGGATTGGTAATGGAGAATGAACTAATTGTGAACGAGTCACTTCATGGTCAGCATCTTGAATTTGCTGAGTCTTCAAAAGTTGCTGATAAACACGATAATAGTATTAAG : GACAAAGTTAGAGAAACGATGGAGAAGGCTTTCTGGGATAGTGTCATGGAATCCATGAAAAAGGATGAAAATAGATACAATCGAGTTGTTGATCTAATGAGAGAAGCAAGAGATGAACTTTGTAGTTTGGCTCCTCAGAGTTGGAGACAAAAGATTAGTGAAGCTATAGATATAGACATCCTCTCTCAG : TTGTTGATCACAGGCAAAATCGACATGGATTATCTTCAAAAGATCATGGATTTCACATTGGTCACTTTGCAGAAACTATCCTCTCCAGCTAAGGAGGATGAGCTAAAAGCAAATTGTCAGAAGTTATTTGGAGAACTAGCTGATATATGTGTGGATGGGTCAGAGAATTCATTTATCCTGGCACTAGTTAGGGGTTTGCGTTTTGTACTGGAAGAGATGCAG : CTGCTGAAACAAGAAATAAGCAAGGCAAGGATTAGAATGTTGGAACCAATTCTCAAGGGACCTGGAGCTTTAGATTATTTGAGGAAAGCTTTCACCAAGCGTTATGGTCTTCCTTCTATGGCTATGACCGCCTTACCCTTGACATGGCAATGGCTTTTATCTGTCTCAGATTCCATGGACCAGGAATTTAATGAACACAAGGAGGCTCTATCCAGCCTGACAAGTGGACAAGATCGTTTCCTTCCTTCTGCCACCCTTAGAACTGGAGGATGCTTTTCAGTTAAAATGAATAAAAATCATGCTTCACCTTTGACCTCTACAG : AAGCTGTAGATGAATGCCAAGAATGCACGGGGGACAAAGTTGATTTATTGGTGAGGCTGGGCTTGTTAAAGTTGGTGTGTGCGGTATCTGGTCTTACGCAAGAAGGGTTGCCTGAAACTCTGCAGCTGAATTTTTTTAGACTAAGGGCTACTCAGGCAAAAATCCAAAAGATCATCGTAATAGCTACCAG : CATTCTAGTCCAAAGACAGGTTCTTCAGAGTATGCAAGCAGTATCAAGCGCTGCAGATATGGATAAAATTGTTCAAGGAAGCGCCAAAGCTCTTTCTGAGCTCCTTGACTCCAACAATGATGCTGGTATTCAAGAGATCATCTCGACACTTGTCAAACCTTTGGAGCATGGCGACAATGGTACTGATGAGATGAAGCTTCAGCAGATCAAGGAGATCATGGCAAGGATGTTATCCAAGAGCCTGCAAGCTGGGGATGCTATTTTTGTGCATGTAGCCAGGGCAATATATTTGGCTGGAAGGGGAGTTGTACTTGGAGGAACTGGAAGACAAGGAAGAGAATTGGCTGAAGCGGCTCTACGGCAGGTGGGAGTAGCTGTTCTAATTGACGAGATTGTGGATGCCACCTCTGTATTGGTTATGGCAGCACATGTGACGGTGAATGTTCATGGTCCTTGGTATGCACAGTTAGTAGATAATATGTGAAGCTTTTTAACATTCTTTTGTAAATATCAGGGCATGTAGTTATTATTCTGTATTATCTAGCTGTGAAACTCAGTCGAGTGTTGTTATTGTAGTAATGTGACTGGAAACCTAGAAAATGTAGATATTTGCTAAAATAAGAGTTAAATATAAACGCTTGCTTGTATAT</gDNA_template>
            <first_frame> S  H  T  D  E  G  L  V  M  E  N  E  L  I  V  N  E  S  L  H  G  Q  H  L  E  F  A  E  S  S  K  V  A  D  K  H  D  N  S  I  K  :  D  K  V  R  E  T  M  E  K  A  F  W  D  S  V  M  E  S  M  K  K  D  E  N  R  Y  N  R  V  V  D  L  M  R  E  A  R  D  E  L  C  S  L  A  P  Q  S  W  R  Q  K  I  S  E  A  I  D  I  D  I  L  S  Q  :  L  L  I  T  G  K  I  D  M  D  Y  L  Q  K  I  M  D  F  T  L  V  T  L  Q  K  L  S  S  P  A  K  E  D  E  L  K  A  N  C  Q  K  L  F  G  E  L  A  D  I  C  V  D  G  S  E  N  S  F  I  L  A  L  V  R  G  L  R  F  V  L  E  E  M  Q  :  L  L  K  Q  E  I  S  K  A  R  I  R  M  L  E  P  I  L  K  G  P  G  A  L  D  Y  L  R  K  A  F  T  K  R  Y  G  L  P  S  M  A  M  T  A  L  P  L  T  W  Q  W  L  L  S  V  S  D  S  M  D  Q  E  F  N  E  H  K  E  A  L  S  S  L  T  S  G  Q  D  R  F  L  P  S  A  T  L  R  T  G  G  C  F  S  V  K  M  N  K  N  H  A  S  P  L  T  S  T   : E  A  V  D  E  C  Q  E  C  T  G  D  K  V  D  L  L  V  R  L  G  L  L  K  L  V  C  A  V  S  G  L  T  Q  E  G  L  P  E  T  L  Q  L  N  F  F  R  L  R  A  T  Q  A  K  I  Q  K  I  I  V  I  A  T  S :   I  L  V  Q  R  Q  V  L  Q  S  M  Q  A  V  S  S  A  A  D  M  D  K  I  V  Q  G  S  A  K  A  L  S  E  L  L  D  S  N  N  D  A  G  I  Q  E  I  I  S  T  L  V  K  P  L  E  H  G  D  N  G  T  D  E  M  K  L  Q  Q  I  K  E  I  M  A  R  M  L  S  K  S  L  Q  A  G  D  A  I  F  V  H  V  A  R  A  I  Y  L  A  G  R  G  V  V  L  G  G  T  G  R  Q  G  R  E  L  A  E  A  A  L  R  Q  V  G  V  A  V  L  I  D  E  I  V  D  A  T  S  V  L  V  M  A  A  H  V  T  V  N  V  H  G  P  W  Y  A  Q  L  V  D  N  M  *  S  F  L  T  F  F  C  K  Y  Q  G  M  *  L  L  F  C  I  I  *  L  *  N  S  V  E  C  C  Y  C  S  N  V  T  G  N  L  E  N  V  D  I  C  *  N  K  S  *  I  *  T  L  A  C  I  </first_frame>
            <second_frame>  P  I  L  M  R  D  W  *  W  R  M  N  *  L  *  T  S  H  F  M  V  S  I  L  N  L  L  S  L  Q  K  L  L  I  N  T  I  I  V  L  R :   T  K  L  E  K  R  W  R  R  L  S  G  I  V  S  W  N  P  *  K  R  M  K  I  D  T  I  E  L  L  I  *  *  E  K  Q  E  M  N  F  V  V  W  L  L  R  V  G  D  K  R  L  V  K  L  *  I  *  T  S  S  L  S :   C  *  S  Q  A  K  S  T  W  I  I  F  K  R  S  W  I  S  H  W  S  L  C  R  N  Y  P  L  Q  L  R  R  M  S  *  K  Q  I  V  R  S  Y  L  E  N  *  L  I  Y  V  W  M  G  Q  R  I  H  L  S  W  H  *  L  G  V  C  V  L  Y  W  K  R  C  S :   C  *  N  K  K  *  A  R  Q  G  L  E  C  W  N  Q  F  S  R  D  L  E  L  *  I  I  *  G  K  L  S  P  S  V  M  V  F  L  L  W  L  *  P  P  Y  P  *  H  G  N  G  F  Y  L  S  Q  I  P  W  T  R  N  L  M  N  T  R  R  L  Y  P  A  *  Q  V  D  K  I  V  S  F  L  L  P  P  L  E  L  E  D  A  F  Q  L  K  *  I  K  I  M  L  H  L  *  P  L  Q  :  K  L  *  M  N  A  K  N  A  R  G  T  K  L  I  Y  W  *  G  W  A  C  *  S  W  C  V  R  Y  L  V  L  R  K  K  G  C  L  K  L  C  S  *  I  F  L  D  *  G  L  L  R  Q  K  S  K  R  S  S  *  *  L  P   : A  F  *  S  K  D  R  F  F  R  V  C  K  Q  Y  Q  A  L  Q  I  W  I  K  L  F  K  E  A  P  K  L  F  L  S  S  L  T  P  T  M  M  L  V  F  K  R  S  S  R  H  L  S  N  L  W  S  M  A  T  M  V  L  M  R  *  S  F  S  R  S  R  R  S  W  Q  G  C  Y  P  R  A  C  K  L  G  M  L  F  L  C  M  *  P  G  Q  Y  I  W  L  E  G  E  L  Y  L  E  E  L  E  D  K  E  E  N  W  L  K  R  L  Y  G  R  W  E  *  L  F  *  L  T  R  L  W  M  P  P  L  Y  W  L  W  Q  H  M  *  R  *  M  F  M  V  L  G  M  H  S  *  *  I  I  C  E  A  F  *  H  S  F  V  N  I  R  A  C  S  Y  Y  S  V  L  S  S  C  E  T  Q  S  S  V  V  I  V  V  M  *  L  E  T  *  K  M  *  I  F  A  K  I  R  V  K  Y  K  R  L  L  V  Y </second_frame>
            <third_frame>   P  Y  *  *  G  I  G  N  G  E  *  T  N  C  E  R  V  T  S  W  S  A  S  *  I  C  *  V  F  K  S  C  *  *  T  R  *  *  Y  *   : G  Q  S  *  R  N  D  G  E  G  F  L  G  *  C  H  G  I  H  E  K  G  *  K  *  I  Q  S  S  C  *  S  N  E  R  S  K  R  *  T  L  *  F  G  S  S  E  L  E  T  K  D  *  *  S  Y  R  Y  R  H  P  L  S   : V  V  D  H  R  Q  N  R  H  G  L  S  S  K  D  H  G  F  H  I  G  H  F  A  E  T  I  L  S  S  *  G  G  *  A  K  S  K  L  S  E  V  I  W  R  T  S  *  Y  M  C  G  W  V  R  E  F  I  Y  P  G  T  S  *  G  F  A  F  C  T  G  R  D  A   : A  A  E  T  R  N  K  Q  G  K  D  *  N  V  G  T  N  S  Q  G  T  W  S  F  R  L  F  E  E  S  F  H  Q  A  L  W  S  S  F  Y  G  Y  D  R  L  T  L  D  M  A  M  A  F  I  C  L  R  F  H  G  P  G  I  *  *  T  Q  G  G  S  I  Q  P  D  K  W  T  R  S  F  P  S  F  C  H  P  *  N  W  R  M  L  F  S  *  N  E  *  K  S  C  F  T  F  D  L  Y  R :   S  C  R  *  M  P  R  M  H  G  G  Q  S  *  F  I  G  E  A  G  L  V  K  V  G  V  C  G  I  W  S  Y  A  R  R  V  A  *  N  S  A  A  E  F  F  *  T  K  G  Y  S  G  K  N  P  K  D  H  R  N  S  Y  Q  :  H  S  S  P  K  T  G  S  S  E  Y  A  S  S  I  K  R  C  R  Y  G  *  N  C  S  R  K  R  Q  S  S  F  *  A  P  *  L  Q  Q  *  C  W  Y  S  R  D  H  L  D  T  C  Q  T  F  G  A  W  R  Q  W  Y  *  *  D  E  A  S  A  D  Q  G  D  H  G  K  D  V  I  Q  E  P  A  S  W  G  C  Y  F  C  A  C  S  Q  G  N  I  F  G  W  K  G  S  C  T  W  R  N  W  K  T  R  K  R  I  G  *  S  G  S  T  A  G  G  S  S  C  S  N  *  R  D  C  G  C  H  L  C  I  G  Y  G  S  T  C  D  G  E  C  S  W  S  L  V  C  T  V  S  R  *  Y  V  K  L  F  N  I  L  L  *  I  S  G  H  V  V  I  I  L  Y  Y  L  A  V  K  L  S  R  V  L  L  L  *  *  C  D  W  K  P  R  K  C  R  Y  L  L  K  *  E  L  N  I  N  A  C  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40604" stop="40482"/>
                    <exon start="40378" stop="40190"/>
                    <exon start="40092" stop="39871"/>
                    <exon start="39330" stop="39009"/>
                    <exon start="38900" stop="38711"/>
                    <exon start="38571" stop="38088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTDEGLVMENELIVNESLHGQHLEFAESSKVADKHDNSIKDKVRETMEKAFWDSVMESMKKDENRYNRVVDLMREARDELCSLAPQSWRQKISEAIDIDILSQLLITGKIDMDYLQKIMDFTLVTLQKLSSPAKEDELKANCQKLFGELADICVDGSENSFILALVRGLRFVLEEMQLLKQEISKARIRMLEPILKGPGALDYLRKAFTKRYGLPSMAMTALPLTWQWLLSVSDSMDQEFNEHKEALSSLTSGQDRFLPSATLRTGGCFSVKMNKNHASPLTSTEAVDECQECTGDKVDLLVRLGLLKLVCAVSGLTQEGLPETLQLNFFRLRATQAKIQKIIVIATSILVQRQVLQSMQAVSSAADMDKIVQGSAKALSELLDSNNDAGIQEIISTLVKPLEHGDNGTDEMKLQQIKEIMARMLSKSLQAGDAIFVHVARAIYLAGRGVVLGGTGRQGRELAEAALRQVGVAVLIDEIVDATSVLVMAAHVTVNVHGPWYAQLVDNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="42229" PGL_stop="41466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42229" e_stop="42211"/>
            <exon e_start="42109" e_stop="41994"/>
            <exon e_start="41865" e_stop="41466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.983"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42229" e_stop="42211" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.787">
            <gDNA_intron_boundary i_start="42210" i_stop="42110" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="42109" e_stop="41994" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41993" i_stop="41866" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="41865" e_stop="41466" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42229" stop="42211"/>
              <exon start="42109" stop="41994"/>
              <exon start="41865" stop="41466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGACAAGCTGCAAAGG : GCAAAGAGACAAAGAGAAGAATATTTGATGCAGAGAGGAAAAGCACATAATTCCTTTTGTGACAGTTATGATGAGATACATGACCAGGCTGACCTGCTATCAAGGAAATTAGCAAG : GTGTTGGAAGCAGTTCCTTACACGTGGAAAGACAACCTTCCACCTTGCAAAAGCTTATACTATGCTGAGTATTAACGAGAATGCAGTTAAGGTAATGCCATTTGAGCAGCTAGCAATGAAGATTGAATCGCCTAATACACTACAGAGAACTAAAGGTTTGCTTGATCGGCTTGAGCTTCGCTTCAAATTGTTGCGTGATGTTGACAGTGTGACAAGTACCATTGGTTGGGGTAATATTGATCATCTTCTCAACCGAGTAGCTACACCCAAAAAGAAGGCTACACCAAGGAGATCTCTGCACAGTCGTGGTGCAAAAAAAATAGTATCGAACTTACCAGCAGTGACAACTCCAGTCAAGTTGTTGAGGTATCCAGTTCGAATCGTGCTGTGTGCATATATG</gDNA_template>
            <first_frame> R  R  Q  A  A  K   : G  K  E  T  K  R  R  I  F  D  A  E  R  K  S  T  *  F  L  L  *  Q  L  *  *  D  T  *  P  G  *  P  A  I  K  E  I  S  K  :  V  L  E  A  V  P  Y  T  W  K  D  N  L  P  P  C  K  S  L  Y  Y  A  E  Y  *  R  E  C  S  *  G  N  A  I  *  A  A  S  N  E  D  *  I  A  *  Y  T  T  E  N  *  R  F  A  *  S  A  *  A  S  L  Q  I  V  A  *  C  *  Q  C  D  K  Y  H  W  L  G  *  Y  *  S  S  S  Q  P  S  S  Y  T  Q  K  E  G  Y  T  K  E  I  S  A  Q  S  W  C  K  K  N  S  I  E  L  T  S  S  D  N  S  S  Q  V  V  E  V  S  S  S  N  R  A  V  C  I  Y  </first_frame>
            <second_frame>  E  D  K  L  Q  R  :  A  K  R  Q  R  E  E  Y  L  M  Q  R  G  K  A  H  N  S  F  C  D  S  Y  D  E  I  H  D  Q  A  D  L  L  S  R  K  L  A  R :   C  W  K  Q  F  L  T  R  G  K  T  T  F  H  L  A  K  A  Y  T  M  L  S  I  N  E  N  A  V  K  V  M  P  F  E  Q  L  A  M  K  I  E  S  P  N  T  L  Q  R  T  K  G  L  L  D  R  L  E  L  R  F  K  L  L  R  D  V  D  S  V  T  S  T  I  G  W  G  N  I  D  H  L  L  N  R  V  A  T  P  K  K  K  A  T  P  R  R  S  L  H  S  R  G  A  K  K  I  V  S  N  L  P  A  V  T  T  P  V  K  L  L  R  Y  P  V  R  I  V  L  C  A  Y  M </second_frame>
            <third_frame>   K  T  S  C  K  G :   Q  R  D  K  E  K  N  I  *  C  R  E  E  K  H  I  I  P  F  V  T  V  M  M  R  Y  M  T  R  L  T  C  Y  Q  G  N  *  Q   : G  V  G  S  S  S  L  H  V  E  R  Q  P  S  T  L  Q  K  L  I  L  C  *  V  L  T  R  M  Q  L  R  *  C  H  L  S  S  *  Q  *  R  L  N  R  L  I  H  Y  R  E  L  K  V  C  L  I  G  L  S  F  A  S  N  C  C  V  M  L  T  V  *  Q  V  P  L  V  G  V  I  L  I  I  F  S  T  E  *  L  H  P  K  R  R  L  H  Q  G  D  L  C  T  V  V  V  Q  K  K  *  Y  R  T  Y  Q  Q  *  Q  L  Q  S  S  C  *  G  I  Q  F  E  S  C  C  V  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42228" stop="42211"/>
                    <exon start="42109" stop="41994"/>
                    <exon start="41865" stop="41466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDKLQRAKRQREEYLMQRGKAHNSFCDSYDEIHDQADLLSRKLARCWKQFLTRGKTTFHLAKAYTMLSINENAVKVMPFEQLAMKIESPNTLQRTKGLLDRLELRFKLLRDVDSVTSTIGWGNIDHLLNRVATPKKKATPRRSLHSRGAKKIVSNLPAVTTPVKLLRYPVRIVLCAYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="75032" PGL_stop="73182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75032" e_stop="74765"/>
            <exon e_start="74674" e_stop="74486"/>
            <exon e_start="74335" e_stop="74270"/>
            <exon e_start="74168" e_stop="73605"/>
            <exon e_start="73457" e_stop="73182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="0.966"/>
          <exon-intron don_prob="0.944" acc_prob="0.345" e_score="0.979"/>
          <exon-intron don_prob="0.914" acc_prob="0.916" e_score="0.939"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.957"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="75032" e_stop="74765" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="74764" i_stop="74675" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="74674" e_stop="74486" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.345">
            <gDNA_intron_boundary i_start="74485" i_stop="74336" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="74335" e_stop="74270" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.916">
            <gDNA_intron_boundary i_start="74269" i_stop="74169" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="74168" e_stop="73605" e_length="564"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73604" i_stop="73458" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="0.946">
            <gDNA_exon_boundary e_start="73457" e_stop="73182" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75032" stop="74765"/>
              <exon start="74674" stop="74486"/>
              <exon start="74335" stop="74270"/>
              <exon start="74168" stop="73605"/>
              <exon start="73457" stop="73182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g22200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAACGAATCACCAGACGAGTTGTACATCATAGTGTCAGGGGAGGTGGAAATGATTGAATCTGAAATGGAGAATGAGCCAACTGTTTGGACTTTCAAATCTGGAGATATGATAGGAGAAGTAGGGGCATTGTGTTGTAGACCTCAGAGCTACACGTATCGAACCAAAACACTTTCACAGCTCTTGAAGATAAGAACTAGTAATTTGATTGAAGCAATGAAAACCAGACAAGAAGATAATATCATCATGATCAAGAACTTCCTTCAG : CATCATAAGAAGCTCAAAGGCTTAAGGCTTGGAGATTTACTTCATGGAGTGGGGGGAGATTATGGTGATCCAAACATGTATGTTAACTTGCTAACTGTTGCTAGTACAGGTAATGCTACTTTCCTTGAAGAACTTCTCAAGGCTAAATTAGATCCTGATATCGGAGACGCTCAAGGAAGAACTCCACTG : CATCGAAAGGGCATGAAGAGTGTGTCATGGTGCTTCTTAGACATGGATGCAACATAAATCTCCGAG : ATGTAAATGGTCACACCGCGTTGTGGGAAGCTATAGCAGCAAAACACCATTCAACATTTCACGTGTTGTACCATTGGGCTTCCGTCTCCGATCCCTACATTGCTGGTGACCTCTTATGCACAGCAGCTAGAAAAAATGACTTAACAGTGATGAAAGAACTCCTAAAACATGGATTACAAGTTGACTCGAAGGACCGCGATGGATCAACTGCTATTCATGTTGCACTGGAAGAAAATCTTGAAGACATGGTAAAGCTACTTCTAATGAATGGAGCTGAGATAAACGATAAGTTAAAGTACAAGCTTTCTTCAATGAACCTAAATGACATGCTACAAAAGCGCGAAGTAGGACACAGAATTATGGTATCCGACACAATGGATGAAGTTGCTCAAAAATGGCGCCAACAAGAGAAGCAACACAATTCAGAAAGCACTAGGGATCAAATGTCTTTTAGAGTTAGCATATACAGAGGCCATCCTGTTATCAGGAGAAGAACTCATTGCAGTGAACCTGGCAAATTAATTACGCTTCCAAATTCACTTGCAGAGCTCAAGATCATTGCAG : GTCAGAAATTTGGATTTGATGCAACAAATGCATCGATTACGGATCAAGAAGGATCAGAAATTGACTCAATTGAAGTAATAAGAGATAATGACAAGCTATTTATAGTTGAAGGTCCAAACTGCTTGTAGCAATACCTATTAGTGACACTTAAAAGTGTCTGTTAAGATGCATATATCACTAAAGAACTCAGAAGAAAAATGTATAGTGGACATACATTTCTTTCCTATTTGTGTGGCATATTGAGAACCTATTGCAGTGATATATACTCAAACTTTT</gDNA_template>
            <first_frame> A  E  R  I  T  R  R  V  V  H  H  S  V  R  G  G  G  N  D  *  I  *  N  G  E  *  A  N  C  L  D  F  Q  I  W  R  Y  D  R  R  S  R  G  I  V  L  *  T  S  E  L  H  V  S  N  Q  N  T  F  T  A  L  E  D  K  N  *  *  F  D  *  S  N  E  N  Q  T  R  R  *  Y  H  H  D  Q  E  L  P  S   : A  S  *  E  A  Q  R  L  K  A  W  R  F  T  S  W  S  G  G  R  L  W  *  S  K  H  V  C  *  L  A  N  C  C  *  Y  R  *  C  Y  F  P  *  R  T  S  Q  G  *  I  R  S  *  Y  R  R  R  S  R  K  N  S  T   : A  S  K  G  H  E  E  C  V  M  V  L  L  R  H  G  C  N  I  N  L  R   : D  V  N  G  H  T  A  L  W  E  A  I  A  A  K  H  H  S  T  F  H  V  L  Y  H  W  A  S  V  S  D  P  Y  I  A  G  D  L  L  C  T  A  A  R  K  N  D  L  T  V  M  K  E  L  L  K  H  G  L  Q  V  D  S  K  D  R  D  G  S  T  A  I  H  V  A  L  E  E  N  L  E  D  M  V  K  L  L  L  M  N  G  A  E  I  N  D  K  L  K  Y  K  L  S  S  M  N  L  N  D  M  L  Q  K  R  E  V  G  H  R  I  M  V  S  D  T  M  D  E  V  A  Q  K  W  R  Q  Q  E  K  Q  H  N  S  E  S  T  R  D  Q  M  S  F  R  V  S  I  Y  R  G  H  P  V  I  R  R  R  T  H  C  S  E  P  G  K  L  I  T  L  P  N  S  L  A  E  L  K  I  I  A   : G  Q  K  F  G  F  D  A  T  N  A  S  I  T  D  Q  E  G  S  E  I  D  S  I  E  V  I  R  D  N  D  K  L  F  I  V  E  G  P  N  C  L  *  Q  Y  L  L  V  T  L  K  S  V  C  *  D  A  Y  I  T  K  E  L  R  R  K  M  Y  S  G  H  T  F  L  S  Y  L  C  G  I  L  R  T  Y  C  S  D  I  Y  S  N  F  </first_frame>
            <second_frame>  Q  N  E  S  P  D  E  L  Y  I  I  V  S  G  E  V  E  M  I  E  S  E  M  E  N  E  P  T  V  W  T  F  K  S  G  D  M  I  G  E  V  G  A  L  C  C  R  P  Q  S  Y  T  Y  R  T  K  T  L  S  Q  L  L  K  I  R  T  S  N  L  I  E  A  M  K  T  R  Q  E  D  N  I  I  M  I  K  N  F  L  Q  :  H  H  K  K  L  K  G  L  R  L  G  D  L  L  H  G  V  G  G  D  Y  G  D  P  N  M  Y  V  N  L  L  T  V  A  S  T  G  N  A  T  F  L  E  E  L  L  K  A  K  L  D  P  D  I  G  D  A  Q  G  R  T  P  L  :  H  R  K  G  M  K  S  V  S  W  C  F  L  D  M  D  A  T  *  I  S  E  :  M  *  M  V  T  P  R  C  G  K  L  *  Q  Q  N  T  I  Q  H  F  T  C  C  T  I  G  L  P  S  P  I  P  T  L  L  V  T  S  Y  A  Q  Q  L  E  K  M  T  *  Q  *  *  K  N  S  *  N  M  D  Y  K  L  T  R  R  T  A  M  D  Q  L  L  F  M  L  H  W  K  K  I  L  K  T  W  *  S  Y  F  *  *  M  E  L  R  *  T  I  S  *  S  T  S  F  L  Q  *  T  *  M  T  C  Y  K  S  A  K  *  D  T  E  L  W  Y  P  T  Q  W  M  K  L  L  K  N  G  A  N  K  R  S  N  T  I  Q  K  A  L  G  I  K  C  L  L  E  L  A  Y  T  E  A  I  L  L  S  G  E  E  L  I  A  V  N  L  A  N  *  L  R  F  Q  I  H  L  Q  S  S  R  S  L  Q  :  V  R  N  L  D  L  M  Q  Q  M  H  R  L  R  I  K  K  D  Q  K  L  T  Q  L  K  *  *  E  I  M  T  S  Y  L  *  L  K  V  Q  T  A  C  S  N  T  Y  *  *  H  L  K  V  S  V  K  M  H  I  S  L  K  N  S  E  E  K  C  I  V  D  I  H  F  F  P  I  C  V  A  Y  *  E  P  I  A  V  I  Y  T  Q  T  F </second_frame>
            <third_frame>   R  T  N  H  Q  T  S  C  T  S  *  C  Q  G  R  W  K  *  L  N  L  K  W  R  M  S  Q  L  F  G  L  S  N  L  E  I  *  *  E  K  *  G  H  C  V  V  D  L  R  A  T  R  I  E  P  K  H  F  H  S  S  *  R  *  E  L  V  I  *  L  K  Q  *  K  P  D  K  K  I  I  S  S  *  S  R  T  S  F  S :   I  I  R  S  S  K  A  *  G  L  E  I  Y  F  M  E  W  G  E  I  M  V  I  Q  T  C  M  L  T  C  *  L  L  L  V  Q  V  M  L  L  S  L  K  N  F  S  R  L  N  *  I  L  I  S  E  T  L  K  E  E  L  H  C :   I  E  R  A  *  R  V  C  H  G  A  S  *  T  W  M  Q  H  K  S  P  R :   C  K  W  S  H  R  V  V  G  S  Y  S  S  K  T  P  F  N  I  S  R  V  V  P  L  G  F  R  L  R  S  L  H  C  W  *  P  L  M  H  S  S  *  K  K  *  L  N  S  D  E  R  T  P  K  T  W  I  T  S  *  L  E  G  P  R  W  I  N  C  Y  S  C  C  T  G  R  K  S  *  R  H  G  K  A  T  S  N  E  W  S  *  D  K  R  *  V  K  V  Q  A  F  F  N  E  P  K  *  H  A  T  K  A  R  S  R  T  Q  N  Y  G  I  R  H  N  G  *  S  C  S  K  M  A  P  T  R  E  A  T  Q  F  R  K  H  *  G  S  N  V  F  *  S  *  H  I  Q  R  P  S  C  Y  Q  E  K  N  S  L  Q  *  T  W  Q  I  N  Y  A  S  K  F  T  C  R  A  Q  D  H  C  R :   S  E  I  W  I  *  C  N  K  C  I  D  Y  G  S  R  R  I  R  N  *  L  N  *  S  N  K  R  *  *  Q  A  I  Y  S  *  R  S  K  L  L  V  A  I  P  I  S  D  T  *  K  C  L  L  R  C  I  Y  H  *  R  T  Q  K  K  N  V  *  W  T  Y  I  S  F  L  F  V  W  H  I  E  N  L  L  Q  *  Y  I  L  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74516" stop="74486"/>
                    <exon start="74335" stop="74270"/>
                    <exon start="74168" stop="73605"/>
                    <exon start="73457" stop="73330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRRRSRKNSTASKGHEECVMVLLRHGCNINLRDVNGHTALWEAIAAKHHSTFHVLYHWASVSDPYIAGDLLCTAARKNDLTVMKELLKHGLQVDSKDRDGSTAIHVALEENLEDMVKLLLMNGAEINDKLKYKLSSMNLNDMLQKREVGHRIMVSDTMDEVAQKWRQQEKQHNSESTRDQMSFRVSIYRGHPVIRRRTHCSEPGKLITLPNSLAELKIIAGQKFGFDATNASITDQEGSEIDSIEVIRDNDKLFIVEGPNCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="85783" PGL_stop="81655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85783" e_stop="85673"/>
            <exon e_start="85588" e_stop="85500"/>
            <exon e_start="85319" e_stop="84967"/>
            <exon e_start="84847" e_stop="84752"/>
            <exon e_start="84641" e_stop="84583"/>
            <exon e_start="84239" e_stop="84137"/>
            <exon e_start="84038" e_stop="83880"/>
            <exon e_start="83746" e_stop="83606"/>
            <exon e_start="83507" e_stop="83464"/>
            <exon e_start="83370" e_stop="83256"/>
            <exon e_start="82552" e_stop="82400"/>
            <exon e_start="82285" e_stop="81655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="0.973"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.955"/>
          <exon-intron don_prob="0.991" acc_prob="0.940" e_score="0.972"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.577" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="0.971"/>
          <exon-intron don_prob="0.942" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.910" acc_prob="0.994" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="0.977"/>
          <exon-intron don_prob="0.941" acc_prob="0.987" e_score="0.948"/>
          <exon-intron don_prob="0.259" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="85783" e_stop="85673" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="85672" i_stop="85589" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="85588" e_stop="85500" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="85499" i_stop="85320" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="85319" e_stop="84967" e_length="353"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.940">
            <gDNA_intron_boundary i_start="84966" i_stop="84848" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="84847" e_stop="84752" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84751" i_stop="84642" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84641" e_stop="84583" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.577">
            <gDNA_intron_boundary i_start="84582" i_stop="84240" i_length="343"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="84239" e_stop="84137" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="84136" i_stop="84039" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="84038" e_stop="83880" e_length="159"/>
          </exon>
          <intron i_serial="7" don_prob="0.942" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83879" i_stop="83747" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="83746" e_stop="83606" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.910" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83605" i_stop="83508" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="83507" e_stop="83464" e_length="44"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="83463" i_stop="83371" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="0.948">
            <gDNA_exon_boundary e_start="83370" e_stop="83256" e_length="115"/>
          </exon>
          <intron i_serial="10" don_prob="0.941" acc_prob="0.987">
            <gDNA_intron_boundary i_start="83255" i_stop="82553" i_length="703"/>
          </intron>
          <exon e_serial="11" e_score="0.987">
            <gDNA_exon_boundary e_start="82552" e_stop="82400" e_length="153"/>
          </exon>
          <intron i_serial="11" don_prob="0.259" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82399" i_stop="82286" i_length="114"/>
          </intron>
          <exon e_serial="12" e_score="0.902">
            <gDNA_exon_boundary e_start="82285" e_stop="81655" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85783" stop="85673"/>
              <exon start="85588" stop="85500"/>
              <exon start="85319" stop="84967"/>
              <exon start="84847" stop="84752"/>
              <exon start="84641" stop="84583"/>
              <exon start="84239" stop="84137"/>
              <exon start="84038" stop="83880"/>
              <exon start="83746" stop="83606"/>
              <exon start="83507" stop="83464"/>
              <exon start="83370" stop="83256"/>
              <exon start="82552" stop="82400"/>
              <exon start="82285" stop="81655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g71220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACACCATTTATGGTCCCAAAGCGTTTTTTGCTAATATGCCACCTTCTAAGACGCTAACTATGAATCTTGATGTTCCTGAGCCATGGCTCGTTGAGCCTGTAGTTGCTGT : CCATGACCTAGATAATATGTTGCTTGAAAACCTGGGAGAGACTAGGACACTCCAAGCAGTGTATGAACTTGAAGCACTAGTCCTGACAG : GTCATTGCTCTGAGAAGGATCAGGAGCCTCCTAGAGGACTTCAGCTAATCCTAGGCACTAAAAGTACACCTCACTTGGTTGACACACTTGTCATGGCCAATTTGGGTTACTGGCAAATGAAAGCGTTTCCTGGAGTTTGGTACCTGCAGCTTGCTCCTGGTCGAAGCTCAGAGCTTTATGCTTTGAAAGATGATGGTGATGGTGGTCAGGAGACAACTTTGTCAAAACGGATCATTATAGATGATTTGCGTGGTAAACTTGTTCACATGGAAGTGATTAAGAAAAAGGGCAAGGAACATGAAAAACTGTTGGTTTCAGCTGATGAAGATAGCCATTCACAAGAGAAGAAAAAG : GGAAACCAGAACAGTTGGAATTCTAATATTCTTAAATGGGCTTCTGGATTTATTGGTGGCAGTGACCAATCAAAGAAGAGTAAAAACACTCCAGTG : GTAACCGGTGGTCGTCATGGGAAGACGATTAACATATTCTCTGTTGCTTCTGGACACTT : ATATGAACGCTTCCTAAAAATTATGATACTAAGTGTTCTAAAGAATACTCAACGGCCAGTGAAGTTCTGGTTCATAAAAAACTATTTGTCTCCTCAGTTCAAG : GATGTAATCCCTCATATGGCTCGAGAATATGGTTTTGAATATGAACTAATTACCTACAAATGGCCTACATGGTTGCACAAACAAAAGGAGAAGCAAAGAATCATTTGGGCATATAAAATTCTATTTCTTGATGTCATTTTCCCCCTGGCACTGGAGAAG : GTTATCTTCGTAGACGCAGACCAAATTGTAAGAACTGACATGGGAGAACTTTATGACATGGATTTGAAAGGACGGCCACTTGCATACACACCTTTCTGTGATAACAACAGGGAGATGGATGGCTATCGTTTTTGGAAACAA : GGCTTCTGGAAAGAGCATTTACGAGGAAGACCATATCATATTAG : TGCTCTATATGTTGTCGATCTGCTTAAATTCCGGGAGACTGCTGCTGGAGATAATTTACGAGTGTTTTATGAGACACTGAGCAAGGATCCAAACAGTCTTTCAAATCTGGATCAG : GATCTCCCAAACTATGCTCAGCATACTGTACCCATCTTTTCACTCCCACAAGAATGGCTTTGGTGTGAGTCATGGTGTGGTAATGCAACAAAGCCCAAGGCAAAAACAATAGACCTCTGCAATAATCCCATGACAAAAGAACCCAAGCTTCAG : GGCGCCAAGAGGATTGTGGCAGAGTGGCCAGAACTTGACTATGAAGCTAGACGCGTTACTGCAAAGATCTTGGGTGAAGACTTTGATCCCCAAGACCAGGCAGCACCTCCTGCTGAAACACAAAAAACCATCAGCGATACTCCATTAGAAGATGAGGAATCCAAGTCAGAACTGTGAATTTGATGCTAGGCAAGTATTCCTGGTGCTTAGACACCCCTTCTTATCGGATACATTCACTTTGTGGTGCATCTCAGCTGCCATTGTAAAAAGGCTAAGAACAGTGTCTGTTGAGATTGTCAATTGAGGCAGAGACTTAGAAAAATTGATTAGCTAAGGCGGCCTTAAATGCACGTTTACGTACCAATTTTGCAATTTGATCTGCCCTTAGTTGTTAGTAGAGAGGCAGACTTGACATCTCATATGGATAGATAGCTGCAGAAGATTCTTGGTAATATATCATACTTACTATGTGCTACTCTCCACAGATTGGGCAGTTAGGAAACAACTTTCAAGATCTTTTATTGTTGAAAGTTGGAACATTCTGCATTTTTGATATGTAACATTGAGGTCTCACCTACATTCCAGTAACTTTTAAAGGTTTGAGCAGTTAAATTACTACATCCCTCCCCAA</gDNA_template>
            <first_frame> L  H  H  L  W  S  Q  S  V  F  C  *  Y  A  T  F  *  D  A  N  Y  E  S  *  C  S  *  A  M  A  R  *  A  C  S  C  C  :  P  *  P  R  *  Y  V  A  *  K  P  G  R  D  *  D  T  P  S  S  V  *  T  *  S  T  S  P  D  R :   S  L  L  *  E  G  S  G  A  S  *  R  T  S  A  N  P  R  H  *  K  Y  T  S  L  G  *  H  T  C  H  G  Q  F  G  L  L  A  N  E  S  V  S  W  S  L  V  P  A  A  C  S  W  S  K  L  R  A  L  C  F  E  R  *  W  *  W  W  S  G  D  N  F  V  K  T  D  H  Y  R  *  F  A  W  *  T  C  S  H  G  S  D  *  E  K  G  Q  G  T  *  K  T  V  G  F  S  *  *  R  *  P  F  T  R  E  E  K   : G  K  P  E  Q  L  E  F  *  Y  S  *  M  G  F  W  I  Y  W  W  Q  *  P  I  K  E  E  *  K  H  S  S   : G  N  R  W  S  S  W  E  D  D  *  H  I  L  C  C  F  W  T  L  :  I  *  T  L  P  K  N  Y  D  T  K  C  S  K  E  Y  S  T  A  S  E  V  L  V  H  K  K  L  F  V  S  S  V  Q   : G  C  N  P  S  Y  G  S  R  I  W  F  *  I  *  T  N  Y  L  Q  M  A  Y  M  V  A  Q  T  K  G  E  A  K  N  H  L  G  I  *  N  S  I  S  *  C  H  F  P  P  G  T  G  E   : G  Y  L  R  R  R  R  P  N  C  K  N  *  H  G  R  T  L  *  H  G  F  E  R  T  A  T  C  I  H  T  F  L  *  *  Q  Q  G  D  G  W  L  S  F  L  E  T   : R  L  L  E  R  A  F  T  R  K  T  I  S  Y  *  :  C  S  I  C  C  R  S  A  *  I  P  G  D  C  C  W  R  *  F  T  S  V  L  *  D  T  E  Q  G  S  K  Q  S  F  K  S  G  S   : G  S  P  K  L  C  S  A  Y  C  T  H  L  F  T  P  T  R  M  A  L  V  *  V  M  V  W  *  C  N  K  A  Q  G  K  N  N  R  P  L  Q  *  S  H  D  K  R  T  Q  A  S   : G  R  Q  E  D  C  G  R  V  A  R  T  *  L  *  S  *  T  R  Y  C  K  D  L  G  *  R  L  *  S  P  R  P  G  S  T  S  C  *  N  T  K  N  H  Q  R  Y  S  I  R  R  *  G  I  Q  V  R  T  V  N  L  M  L  G  K  Y  S  W  C  L  D  T  P  S  Y  R  I  H  S  L  C  G  A  S  Q  L  P  L  *  K  G  *  E  Q  C  L  L  R  L  S  I  E  A  E  T  *  K  N  *  L  A  K  A  A  L  N  A  R  L  R  T  N  F  A  I  *  S  A  L  S  C  *  *  R  G  R  L  D  I  S  Y  G  *  I  A  A  E  D  S  W  *  Y  I  I  L  T  M  C  Y  S  P  Q  I  G  Q  L  G  N  N  F  Q  D  L  L  L  L  K  V  G  T  F  C  I  F  D  M  *  H  *  G  L  T  Y  I  P  V  T  F  K  G  L  S  S  *  I  T  T  S  L  P   </first_frame>
            <second_frame>  Y  T  I  Y  G  P  K  A  F  F  A  N  M  P  P  S  K  T  L  T  M  N  L  D  V  P  E  P  W  L  V  E  P  V  V  A  V :   H  D  L  D  N  M  L  L  E  N  L  G  E  T  R  T  L  Q  A  V  Y  E  L  E  A  L  V  L  T   : G  H  C  S  E  K  D  Q  E  P  P  R  G  L  Q  L  I  L  G  T  K  S  T  P  H  L  V  D  T  L  V  M  A  N  L  G  Y  W  Q  M  K  A  F  P  G  V  W  Y  L  Q  L  A  P  G  R  S  S  E  L  Y  A  L  K  D  D  G  D  G  G  Q  E  T  T  L  S  K  R  I  I  I  D  D  L  R  G  K  L  V  H  M  E  V  I  K  K  K  G  K  E  H  E  K  L  L  V  S  A  D  E  D  S  H  S  Q  E  K  K  K  :  G  N  Q  N  S  W  N  S  N  I  L  K  W  A  S  G  F  I  G  G  S  D  Q  S  K  K  S  K  N  T  P  V  :  V  T  G  G  R  H  G  K  T  I  N  I  F  S  V  A  S  G  H  L :   Y  E  R  F  L  K  I  M  I  L  S  V  L  K  N  T  Q  R  P  V  K  F  W  F  I  K  N  Y  L  S  P  Q  F  K  :  D  V  I  P  H  M  A  R  E  Y  G  F  E  Y  E  L  I  T  Y  K  W  P  T  W  L  H  K  Q  K  E  K  Q  R  I  I  W  A  Y  K  I  L  F  L  D  V  I  F  P  L  A  L  E  K  :  V  I  F  V  D  A  D  Q  I  V  R  T  D  M  G  E  L  Y  D  M  D  L  K  G  R  P  L  A  Y  T  P  F  C  D  N  N  R  E  M  D  G  Y  R  F  W  K  Q  :  G  F  W  K  E  H  L  R  G  R  P  Y  H  I  S :   A  L  Y  V  V  D  L  L  K  F  R  E  T  A  A  G  D  N  L  R  V  F  Y  E  T  L  S  K  D  P  N  S  L  S  N  L  D  Q  :  D  L  P  N  Y  A  Q  H  T  V  P  I  F  S  L  P  Q  E  W  L  W  C  E  S  W  C  G  N  A  T  K  P  K  A  K  T  I  D  L  C  N  N  P  M  T  K  E  P  K  L  Q  :  G  A  K  R  I  V  A  E  W  P  E  L  D  Y  E  A  R  R  V  T  A  K  I  L  G  E  D  F  D  P  Q  D  Q  A  A  P  P  A  E  T  Q  K  T  I  S  D  T  P  L  E  D  E  E  S  K  S  E  L  *  I  *  C  *  A  S  I  P  G  A  *  T  P  L  L  I  G  Y  I  H  F  V  V  H  L  S  C  H  C  K  K  A  K  N  S  V  C  *  D  C  Q  L  R  Q  R  L  R  K  I  D  *  L  R  R  P  *  M  H  V  Y  V  P  I  L  Q  F  D  L  P  L  V  V  S  R  E  A  D  L  T  S  H  M  D  R  *  L  Q  K  I  L  G  N  I  S  Y  L  L  C  A  T  L  H  R  L  G  S  *  E  T  T  F  K  I  F  Y  C  *  K  L  E  H  S  A  F  L  I  C  N  I  E  V  S  P  T  F  Q  *  L  L  K  V  *  A  V  K  L  L  H  P  S  P  </second_frame>
            <third_frame>   T  P  F  M  V  P  K  R  F  L  L  I  C  H  L  L  R  R  *  L  *  I  L  M  F  L  S  H  G  S  L  S  L  *  L  L   : S  M  T  *  I  I  C  C  L  K  T  W  E  R  L  G  H  S  K  Q  C  M  N  L  K  H  *  S  *  Q  :  V  I  A  L  R  R  I  R  S  L  L  E  D  F  S  *  S  *  A  L  K  V  H  L  T  W  L  T  H  L  S  W  P  I  W  V  T  G  K  *  K  R  F  L  E  F  G  T  C  S  L  L  L  V  E  A  Q  S  F  M  L  *  K  M  M  V  M  V  V  R  R  Q  L  C  Q  N  G  S  L  *  M  I  C  V  V  N  L  F  T  W  K  *  L  R  K  R  A  R  N  M  K  N  C  W  F  Q  L  M  K  I  A  I  H  K  R  R  K  R :   E  T  R  T  V  G  I  L  I  F  L  N  G  L  L  D  L  L  V  A  V  T  N  Q  R  R  V  K  T  L  Q  W :   *  P  V  V  V  M  G  R  R  L  T  Y  S  L  L  L  L  D  T   : Y  M  N  A  S  *  K  L  *  Y  *  V  F  *  R  I  L  N  G  Q  *  S  S  G  S  *  K  T  I  C  L  L  S  S  R :   M  *  S  L  I  W  L  E  N  M  V  L  N  M  N  *  L  P  T  N  G  L  H  G  C  T  N  K  R  R  S  K  E  S  F  G  H  I  K  F  Y  F  L  M  S  F  S  P  W  H  W  R  R :   L  S  S  *  T  Q  T  K  L  *  E  L  T  W  E  N  F  M  T  W  I  *  K  D  G  H  L  H  T  H  L  S  V  I  T  T  G  R  W  M  A  I  V  F  G  N  K :   A  S  G  K  S  I  Y  E  E  D  H  I  I  L   : V  L  Y  M  L  S  I  C  L  N  S  G  R  L  L  L  E  I  I  Y  E  C  F  M  R  H  *  A  R  I  Q  T  V  F  Q  I  W  I  R :   I  S  Q  T  M  L  S  I  L  Y  P  S  F  H  S  H  K  N  G  F  G  V  S  H  G  V  V  M  Q  Q  S  P  R  Q  K  Q  *  T  S  A  I  I  P  *  Q  K  N  P  S  F  R :   A  P  R  G  L  W  Q  S  G  Q  N  L  T  M  K  L  D  A  L  L  Q  R  S  W  V  K  T  L  I  P  K  T  R  Q  H  L  L  L  K  H  K  K  P  S  A  I  L  H  *  K  M  R  N  P  S  Q  N  C  E  F  D  A  R  Q  V  F  L  V  L  R  H  P  F  L  S  D  T  F  T  L  W  C  I  S  A  A  I  V  K  R  L  R  T  V  S  V  E  I  V  N  *  G  R  D  L  E  K  L  I  S  *  G  G  L  K  C  T  F  T  Y  Q  F  C  N  L  I  C  P  *  L  L  V  E  R  Q  T  *  H  L  I  W  I  D  S  C  R  R  F  L  V  I  Y  H  T  Y  Y  V  L  L  S  T  D  W  A  V  R  K  Q  L  S  R  S  F  I  V  E  S  W  N  I  L  H  F  *  Y  V  T  L  R  S  H  L  H  S  S  N  F  *  R  F  E  Q  L  N  Y  Y  I  P  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85782" stop="85673"/>
                    <exon start="85588" stop="85500"/>
                    <exon start="85319" stop="84967"/>
                    <exon start="84847" stop="84752"/>
                    <exon start="84641" stop="84583"/>
                    <exon start="84239" stop="84137"/>
                    <exon start="84038" stop="83880"/>
                    <exon start="83746" stop="83606"/>
                    <exon start="83507" stop="83464"/>
                    <exon start="83370" stop="83256"/>
                    <exon start="82552" stop="82400"/>
                    <exon start="82285" stop="82109"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTIYGPKAFFANMPPSKTLTMNLDVPEPWLVEPVVAVHDLDNMLLENLGETRTLQAVYELEALVLTGHCSEKDQEPPRGLQLILGTKSTPHLVDTLVMANLGYWQMKAFPGVWYLQLAPGRSSELYALKDDGDGGQETTLSKRIIIDDLRGKLVHMEVIKKKGKEHEKLLVSADEDSHSQEKKKGNQNSWNSNILKWASGFIGGSDQSKKSKNTPVVTGGRHGKTINIFSVASGHLYERFLKIMILSVLKNTQRPVKFWFIKNYLSPQFKDVIPHMAREYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLALEKVIFVDADQIVRTDMGELYDMDLKGRPLAYTPFCDNNREMDGYRFWKQGFWKEHLRGRPYHISALYVVDLLKFRETAAGDNLRVFYETLSKDPNSLSNLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKPKAKTIDLCNNPMTKEPKLQGAKRIVAEWPELDYEARRVTAKILGEDFDPQDQAAPPAETQKTISDTPLEDEESKSEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="117156" PGL_stop="114762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117156" e_stop="117010"/>
            <exon e_start="116332" e_stop="116231"/>
            <exon e_start="115988" e_stop="115955"/>
            <exon e_start="115553" e_stop="115480"/>
            <exon e_start="115392" e_stop="115327"/>
            <exon e_start="115217" e_stop="114924"/>
            <exon e_start="114816" e_stop="114762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.939"/>
          <exon-intron don_prob="0.947" acc_prob="0.992" e_score="0.980"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.995" e_score="0.959"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="117156" e_stop="117010" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117009" i_stop="116333" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="116332" e_stop="116231" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.992">
            <gDNA_intron_boundary i_start="116230" i_stop="115989" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115988" e_stop="115955" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="115954" i_stop="115554" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115553" e_stop="115480" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.981">
            <gDNA_intron_boundary i_start="115479" i_stop="115393" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115392" e_stop="115327" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.984">
            <gDNA_intron_boundary i_start="115326" i_stop="115218" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="115217" e_stop="114924" e_length="294"/>
          </exon>
          <intron i_serial="6" don_prob="0.771" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114923" i_stop="114817" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="114816" e_stop="114762" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117156" stop="117010"/>
              <exon start="116332" stop="116231"/>
              <exon start="115988" stop="115955"/>
              <exon start="115553" stop="115480"/>
              <exon start="115392" stop="115327"/>
              <exon start="115217" stop="114924"/>
              <exon start="114816" stop="114762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g60990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTTCATCATCCCTACTTATGCCACTACCTTACCGGCCATACGATGTGTCGCCGGCGAAGATTAATCGACGCCTTTCTTCTTCTTTTTCTTCTGCTGCGCTGCCATTCGATCTTTCTCCTCCTCCCATCGACCACGACCTCCTC : GATACTATGACAATTGCTGGGGCAAAGGTATCAGAAGATGGGGTAATAGGGACATTCGATAATGACGAGGAGGCATTAGATGCTGTTGAGAATGGTGTTGCG : GTTGTGGATCTTTCACACTATGGCAGGATAAGAG : TTAGTGGAGAAGACAGGGTTCAGTTTCTTCACAACCAAAGTACTGCTAACTTTGAAATTCTTCATGAGGGGCAG : GGATGTGACACTGTTTTTGTGACACCAACTGCTAGAACCATCGATATTGCCCATGCCTGGGTTATG : AAAACGGCAATCACATTAGTGGTCTCTCCAGTGACCAGGGAAAGAATAACTCATATGCTTGAGAAGTATGTATGGAACTGCCATGGTTTTGCTCTGAATTGCTGTCACTCTTGCTTACCTATGCTTCAATAGTTTTTTGGGGCCTAACCAGTTATTTTACATTACTTACCTGCTGATTTAACAATATGTCATACTTCTATTCATAGGTACATATTCTTTGCAGACAAAGTTGAAATTCAAGATATTACCGAGAAAACGTCCTTGTTCTTACTAGTAGGGCCTACAAGTAACAAA : ATAATGGAGGCTCTGAGTCTTGCTGACATAGTTGGACAACCATATGGATCGCATA</gDNA_template>
            <first_frame> S  S  S  S  S  L  L  M  P  L  P  Y  R  P  Y  D  V  S  P  A  K  I  N  R  R  L  S  S  S  F  S  S  A  A  L  P  F  D  L  S  P  P  P  I  D  H  D  L  L  :  D  T  M  T  I  A  G  A  K  V  S  E  D  G  V  I  G  T  F  D  N  D  E  E  A  L  D  A  V  E  N  G  V  A  :  V  V  D  L  S  H  Y  G  R  I  R   : V  S  G  E  D  R  V  Q  F  L  H  N  Q  S  T  A  N  F  E  I  L  H  E  G  Q  :  G  C  D  T  V  F  V  T  P  T  A  R  T  I  D  I  A  H  A  W  V  M  :  K  T  A  I  T  L  V  V  S  P  V  T  R  E  R  I  T  H  M  L  E  K  Y  V  W  N  C  H  G  F  A  L  N  C  C  H  S  C  L  P  M  L  Q  *  F  F  G  A  *  P  V  I  L  H  Y  L  P  A  D  L  T  I  C  H  T  S  I  H  R  Y  I  F  F  A  D  K  V  E  I  Q  D  I  T  E  K  T  S  L  F  L  L  V  G  P  T  S  N  K  :  I  M  E  A  L  S  L  A  D  I  V  G  Q  P  Y  G  S  H  </first_frame>
            <second_frame>  L  L  H  H  P  Y  L  C  H  Y  L  T  G  H  T  M  C  R  R  R  R  L  I  D  A  F  L  L  L  F  L  L  L  R  C  H  S  I  F  L  L  L  P  S  T  T  T  S  S :   I  L  *  Q  L  L  G  Q  R  Y  Q  K  M  G  *  *  G  H  S  I  M  T  R  R  H  *  M  L  L  R  M  V  L  R :   L  W  I  F  H  T  M  A  G  *  E  :  L  V  E  K  T  G  F  S  F  F  T  T  K  V  L  L  T  L  K  F  F  M  R  G  R :   D  V  T  L  F  L  *  H  Q  L  L  E  P  S  I  L  P  M  P  G  L  * :   K  R  Q  S  H  *  W  S  L  Q  *  P  G  K  E  *  L  I  C  L  R  S  M  Y  G  T  A  M  V  L  L  *  I  A  V  T  L  A  Y  L  C  F  N  S  F  L  G  P  N  Q  L  F  Y  I  T  Y  L  L  I  *  Q  Y  V  I  L  L  F  I  G  T  Y  S  L  Q  T  K  L  K  F  K  I  L  P  R  K  R  P  C  S  Y  *  *  G  L  Q  V  T  K :   *  W  R  L  *  V  L  L  T  *  L  D  N  H  M  D  R  I </second_frame>
            <third_frame>   F  F  I  I  P  T  Y  A  T  T  L  P  A  I  R  C  V  A  G  E  D  *  S  T  P  F  F  F  F  F  F  C  C  A  A  I  R  S  F  S  S  S  H  R  P  R  P  P   : R  Y  Y  D  N  C  W  G  K  G  I  R  R  W  G  N  R  D  I  R  *  *  R  G  G  I  R  C  C  *  E  W  C  C   : G  C  G  S  F  T  L  W  Q  D  K  S :   *  W  R  R  Q  G  S  V  S  S  Q  P  K  Y  C  *  L  *  N  S  S  *  G  A   : G  M  *  H  C  F  C  D  T  N  C  *  N  H  R  Y  C  P  C  L  G  Y   : E  N  G  N  H  I  S  G  L  S  S  D  Q  G  K  N  N  S  Y  A  *  E  V  C  M  E  L  P  W  F  C  S  E  L  L  S  L  L  L  T  Y  A  S  I  V  F  W  G  L  T  S  Y  F  T  L  L  T  C  *  F  N  N  M  S  Y  F  Y  S  *  V  H  I  L  C  R  Q  S  *  N  S  R  Y  Y  R  E  N  V  L  V  L  T  S  R  A  Y  K  *  Q   : N  N  G  G  S  E  S  C  *  H  S  W  T  T  I  W  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117156" stop="117010"/>
                    <exon start="116332" stop="116231"/>
                    <exon start="115988" stop="115955"/>
                    <exon start="115553" stop="115480"/>
                    <exon start="115392" stop="115327"/>
                    <exon start="115217" stop="115086"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSSLLMPLPYRPYDVSPAKINRRLSSSFSSAALPFDLSPPPIDHDLLDTMTIAGAKVSEDGVIGTFDNDEEALDAVENGVAVVDLSHYGRIRVSGEDRVQFLHNQSTANFEILHEGQGCDTVFVTPTARTIDIAHAWVMKTAITLVVSPVTRERITHMLEKYVWNCHGFALNCCHSCLPMLQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115070" stop="114924"/>
                    <exon start="114816" stop="114763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVILHYLPADLTICHTSIHRYIFFADKVEIQDITEKTSLFLLVGPTSNKIMEALSLADIVGQPYGSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="124060" PGL_stop="121173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124060" e_stop="124015"/>
            <exon e_start="123929" e_stop="123841"/>
            <exon e_start="123509" e_stop="123469"/>
            <exon e_start="122673" e_stop="122643"/>
            <exon e_start="122258" e_stop="122136"/>
            <exon e_start="122047" e_stop="121830"/>
            <exon e_start="121711" e_stop="121616"/>
            <exon e_start="121496" e_stop="121384"/>
            <exon e_start="121239" e_stop="121173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.970" e_score="0.978"/>
          <exon-intron don_prob="0.950" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.972" e_score="0.984"/>
          <exon-intron don_prob="0.790" acc_prob="0.373" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="0.990"/>
          <exon-intron don_prob="0.900" acc_prob="0.926" e_score="0.965"/>
          <exon-only e_score="0.776"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124060" e_stop="124015" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124014" i_stop="123930" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="123929" e_stop="123841" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.970">
            <gDNA_intron_boundary i_start="123840" i_stop="123510" i_length="331"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123509" e_stop="123469" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.993">
            <gDNA_intron_boundary i_start="123468" i_stop="122674" i_length="795"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122673" e_stop="122643" e_length="31"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122642" i_stop="122259" i_length="384"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="122258" e_stop="122136" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.972">
            <gDNA_intron_boundary i_start="122135" i_stop="122048" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="122047" e_stop="121830" e_length="218"/>
          </exon>
          <intron i_serial="6" don_prob="0.790" acc_prob="0.373">
            <gDNA_intron_boundary i_start="121829" i_stop="121712" i_length="118"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="121711" e_stop="121616" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="121615" i_stop="121497" i_length="119"/>
          </intron>
          <exon e_serial="8" e_score="0.965">
            <gDNA_exon_boundary e_start="121496" e_stop="121384" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.926">
            <gDNA_intron_boundary i_start="121383" i_stop="121240" i_length="144"/>
          </intron>
          <exon e_serial="9" e_score="0.776">
            <gDNA_exon_boundary e_start="121239" e_stop="121173" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124060" stop="124015"/>
              <exon start="123929" stop="123841"/>
              <exon start="123509" stop="123469"/>
              <exon start="122673" stop="122643"/>
              <exon start="122258" stop="122136"/>
              <exon start="122047" stop="121830"/>
              <exon start="121711" stop="121616"/>
              <exon start="121496" stop="121384"/>
              <exon start="121239" stop="121173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g27640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCCCTTGGCTTATTTGCTTTACATACAAAGGGTTCTTATGCACC : CTACTTGGAAGAGTCATTTAAGATTTTAGTGAGGCATTCTAGCTATTTCCATGAGGACGTTCGATTGCAAGCCATTATTTCTCTCAAAT : ATATTTTGATAGCTACACAAGCAGCATTGCAAGGTCATAAT : GAGGGAATGACAAAGACAAAAGAAGTTCTTG : ATACTGTGATGAAAATCTATATAAAGACAATGATTGAAGATGATGACAAAGAAGTTGTTGCGCAAGCTTGTATGGCTGTTGCTGACATCGTGAAGGATTTTGGTTACATGGCTGTTGAGCCCT : ATATCACTCAGCTTGTTGAGGCAACTGTAGTTCTGTTACGAGAGCAGTCTGCATGTCAGCTCGTAGAATCAGATAGTGAAGTTGATGATGATGACACTGAACATGACGAAGTGCTAATGGATGCTGTTTCTGATCTCCTCCCTGCATTCGCGAAGGCCATGGGTTCTCATTTTGCTCCAATCTTTTCAAAGCTGTTTGAACCTTTGATGAAATTTGCT : AAAGCATCGCGCCCATCTCAAGATCGGACCATGGTCGTTGCAACCCTTGCAGAAGTTGCTCAACACATGGGTGCTCCCATTGGTGGCTATATTGAT : ACTGTGATGTCCCTGGTACTTAAAGAATTAGCTTCAGCGGATGCTACAAACCGAAGGAACGCAGCATTTTGTGTTGGCGAGTTGTGCAAAAATGGTGGTGATGCTGCTTTGAA : ATATTATGGAGATGCCTTACGTGGCCTTTACCCATTGTTTGGCGAAGCTGAGCCAGATAATGCAGTG</gDNA_template>
            <first_frame> K  P  L  A  Y  L  L  Y  I  Q  R  V  L  M  H   : P  T  W  K  S  H  L  R  F  *  *  G  I  L  A  I  S  M  R  T  F  D  C  K  P  L  F  L  S  N  :  I  F  *  *  L  H  K  Q  H  C  K  V  I  M :   R  E  *  Q  R  Q  K  K  F  L  :  I  L  *  *  K  S  I  *  R  Q  *  L  K  M  M  T  K  K  L  L  R  K  L  V  W  L  L  L  T  S  *  R  I  L  V  T  W  L  L  S  P  :  I  S  L  S  L  L  R  Q  L  *  F  C  Y  E  S  S  L  H  V  S  S  *  N  Q  I  V  K  L  M  M  M  T  L  N  M  T  K  C  *  W  M  L  F  L  I  S  S  L  H  S  R  R  P  W  V  L  I  L  L  Q  S  F  Q  S  C  L  N  L  *  *  N  L  L :   K  H  R  A  H  L  K  I  G  P  W  S  L  Q  P  L  Q  K  L  L  N  T  W  V  L  P  L  V  A  I  L  I :   L  *  C  P  W  Y  L  K  N  *  L  Q  R  M  L  Q  T  E  G  T  Q  H  F  V  L  A  S  C  A  K  M  V  V  M  L  L  *   : N  I  M  E  M  P  Y  V  A  F  T  H  C  L  A  K  L  S  Q  I  M  Q   </first_frame>
            <second_frame>  S  P  W  L  I  C  F  T  Y  K  G  F  L  C  T  :  L  L  G  R  V  I  *  D  F  S  E  A  F  *  L  F  P  *  G  R  S  I  A  S  H  Y  F  S  Q  I :   Y  F  D  S  Y  T  S  S  I  A  R  S  *   : *  G  N  D  K  D  K  R  S  S  * :   Y  C  D  E  N  L  Y  K  D  N  D  *  R  *  *  Q  R  S  C  C  A  S  L  Y  G  C  C  *  H  R  E  G  F  W  L  H  G  C  *  A  L :   Y  H  S  A  C  *  G  N  C  S  S  V  T  R  A  V  C  M  S  A  R  R  I  R  *  *  S  *  *  *  *  H  *  T  *  R  S  A  N  G  C  C  F  *  S  P  P  C  I  R  E  G  H  G  F  S  F  C  S  N  L  F  K  A  V  *  T  F  D  E  I  C   : *  S  I  A  P  I  S  R  S  D  H  G  R  C  N  P  C  R  S  C  S  T  H  G  C  S  H  W  W  L  Y  *   : Y  C  D  V  P  G  T  *  R  I  S  F  S  G  C  Y  K  P  K  E  R  S  I  L  C  W  R  V  V  Q  K  W  W  *  C  C  F  E  :  I  L  W  R  C  L  T  W  P  L  P  I  V  W  R  S  *  A  R  *  C  S  </second_frame>
            <third_frame>   A  L  G  L  F  A  L  H  T  K  G  S  Y  A  P :   Y  L  E  E  S  F  K  I  L  V  R  H  S  S  Y  F  H  E  D  V  R  L  Q  A  I  I  S  L  K   : Y  I  L  I  A  T  Q  A  A  L  Q  G  H  N  :  E  G  M  T  K  T  K  E  V  L   : D  T  V  M  K  I  Y  I  K  T  M  I  E  D  D  D  K  E  V  V  A  Q  A  C  M  A  V  A  D  I  V  K  D  F  G  Y  M  A  V  E  P   : Y  I  T  Q  L  V  E  A  T  V  V  L  L  R  E  Q  S  A  C  Q  L  V  E  S  D  S  E  V  D  D  D  D  T  E  H  D  E  V  L  M  D  A  V  S  D  L  L  P  A  F  A  K  A  M  G  S  H  F  A  P  I  F  S  K  L  F  E  P  L  M  K  F  A  :  K  A  S  R  P  S  Q  D  R  T  M  V  V  A  T  L  A  E  V  A  Q  H  M  G  A  P  I  G  G  Y  I  D  :  T  V  M  S  L  V  L  K  E  L  A  S  A  D  A  T  N  R  R  N  A  A  F  C  V  G  E  L  C  K  N  G  G  D  A  A  L  K :   Y  Y  G  D  A  L  R  G  L  Y  P  L  F  G  E  A  E  P  D  N  A  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0057J16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124058" stop="124015"/>
                    <exon start="123929" stop="123841"/>
                    <exon start="123509" stop="123469"/>
                    <exon start="122673" stop="122643"/>
                    <exon start="122258" stop="122136"/>
                    <exon start="122047" stop="121830"/>
                    <exon start="121711" stop="121616"/>
                    <exon start="121496" stop="121384"/>
                    <exon start="121239" stop="121173"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALGLFALHTKGSYAPYLEESFKILVRHSSYFHEDVRLQAIISLKYILIATQAALQGHNEGMTKTKEVLDTVMKIYIKTMIEDDDKEVVAQACMAVADIVKDFGYMAVEPYITQLVEATVVLLREQSACQLVESDSEVDDDDTEHDEVLMDAVSDLLPAFAKAMGSHFAPIFSKLFEPLMKFAKASRPSQDRTMVVATLAEVAQHMGAPIGGYIDTVMSLVLKELASADATNRRNAAFCVGELCKNGGDAALKYYGDALRGLYPLFGEAEPDNAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 20424 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2269 bytes was the average size of a spliced alignment
$ 16120 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1791 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:35:05
-->
