<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:33:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398138" ref_strand="+" ref_description="SGN-E398138 [TUS-41-G20](-)">
      <seq>acatctggatttggtacaatttcaattgtgactaattatgcaaataatcaacccaagttctttgatgattttgtttgttcaatgattaaattgggaaatattagtccattaacaggtactaatggagagattaggaaagattgcaagaggattaattaatgtaatcctatttaattctatgtatgtatgtatgttatttatgtaaatgtaatgtgtgatgaaactcccgtaaagataggagtaaagtttacgtacgttttattctggttgtttgtcgtaatgtgtggtgaaataacaatgttcctaaataagacaatgttatttgctaaaataaaaattccaataatgatgttttaccatctattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="3175" stop="2209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2875" g_stop="2510" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="389"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E398138" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2875" e_stop="2510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTGGATCTAGTACAATTTCAATTGTGACTAATTATGCAAATAATCAACACAAGTTCTTTGATGATTTTGTTTGTTCAATGATTAAATTGGGAAATATTAGTCCATTAACAGGTACTAATGGAGAGATTAGGAAAGATTGCAAGAGGATTAATTAATGTAATCCTATTTAATTCTATGTATGTATGTATGTTATTTATGTAAATGTAATGTGTGATGAAACTCCCGTAAAGATAGGAGTAAAGTTTACGTACGTTTTATTCTGGTTGTTTGTCGTAATGTGTGGTGAAATAACAATGTTCCTAAATAAGACAATGTTATTTGCTAAAATAAAAATTCCAATAATGATGTTTTACCATCTATTC</genome_strand>
        <mrna_strand>ACATCTGGATTTGGTACAATTTCAATTGTGACTAATTATGCAAATAATCAACCCAAGTTCTTTGATGATTTTGTTTGTTCAATGATTAAATTGGGAAATATTAGTCCATTAACAGGTACTAATGGAGAGATTAGGAAAGATTGCAAGAGGATTAATTAATGTAATCCTATTTAATTCTATGTATGTATGTATGTTATTTATGTAAATGTAATGTGTGATGAAACTCCCGTAAAGATAGGAGTAAAGTTTACGTACGTTTTATTCTGGTTGTTTGTCGTAATGTGTGGTGAAATAACAATGTTCCTAAATAAGACAATGTTATTTGCTAAAATAAAAATTCCAATAATGATGTTTTACCATCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395179" ref_strand="+" ref_description="SGN-E395179 [TUS-41-G20]">
      <seq>ctcattataaattaactcctacattttatgattgcacttgcccaaatgtcatacacattgtacgtgatgttatggagcaaattcaacgtagagatgttcgagctggggccaaaattattcgtcttcattttcatgattgcttcgttaacggttgtgatggatcaattttacttaataatgcaactggaattataagtgaaaaagatgcaaatccaaatgttggtgctggaggatttgatattgttgatgaaattaaaaccgcattggaaaatgagtgccctggcgttgtttcttgtgctgatattttagctcttgcatctgaaatcggagttgttttggctggaggtccatcatggcaagttcctttagggagaagagacagcttaacagcaaacagaagtggagctaatagtgatatcccaagccctactgaaacccttgctgttatgataccacaattcactagaaagggaatggatttaactgatcttgttgctctatcaggggcacatacatttggaagagcaagatgtagaacattcaatcaaagacttttcaactttagtggaagtggtagacctgatccaaccatagactctaattatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="5514" stop="2724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5214" g_stop="5066" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4531" g_stop="4343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="338" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4342" i_stop="3895" i_length="448">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3894" g_stop="3729" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="504" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3728" i_stop="3130" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3129" g_stop="3024" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="610" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E395179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5214" e_stop="5066"/>
          <exon e_start="4531" e_stop="4343"/>
          <exon e_start="3894" e_stop="3729"/>
          <exon e_start="3129" e_stop="3024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAACGTACGTTAATTTCATTAGAAAAAAAAACATGATTTTCAATTTCTTTTACTAATGTTACTATTTAACATATGGTTTCATTTCATGTGCATGTTTATGTGTCTTGATACATTACGTTATTGACAACGTAAATAATTTTTATATTAACTAACAACATTGTAGTTTAACATATAATTATGGATTATATTTAACTAAAGATTTAAATAATATGCACTAATAGTTATATTGTTCATACTCATTAAAAATAATGTTGTATTTGCGTTAAATCCTTAAAAAATACACTATTTTGGAGGATTCAACACGGATTCATTGACGTTTTTAAAAAGTCCGAGCAACGTAGACAGATATAATAGTATGTATAAGTTTAAGTTTTACACACTGATAAGGTATAGTTAGAGAATAATTATGCTATCATAGAGTTCAACTTGTAAGTACCGTTTATAGTGATTTATTACGATAAATATTTTTTACATTGTTAATATATCGTAACTCGGCATATATAGTTAAATTAATGGTGATTTTAACTTTTGTATACAGGGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTGGTAAATCACACAATTTCGTCATAGCGTTTTACTTTTACATGTATTTCAAACGATTCTAATAAAAATAATTTTCTTAAGTTAAAAATTGATCGAAAAATAAATATATTTTTTTACTTCAAGAAGGTAGAAGTTATAAGGTTTGTATAATCATTTGTCAGACTATACACAGTATAATGTTATTGGTAAGTCAAAAAGTGTCAATATGTAATATATATAAATAAAAAAATATTTTTAACTATAATGTGTAATTTTTCGAAAAAAAGATACTGTCGATCAACACGCCTCAAGTATACGTGACTCCACCGCCTGATGTGATTTATAAGTCATGAATTCAAATTGTAAAAGTAATCATCTATGTTAACGTCAAAATAAACTGTCTACATTTCTTTTTTCTAATTCTATCTGAATACGAAATGCTTCGTTTATCGAACTATTTTTTTAAATTCAGGCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTGAAACCCTTGCTGTTATGATACCACAATTCACTAGAAAGGGAATGGATTTAACTGATCTTGTTGCTCTATCAGGTAATCGATTCGATTAATTCAAATTCGTATAATATTTTTTTTACTATATATGAGGGATTTTAGCATTCGTTGTTAAGAGGATTATAATTTCGGAGTCTGAACTCGAAATATCTAATTAAAGAACATGAGGACCTTAGCACCCCCTCAATAGTAAAATTTCATGTCGTATAATATTAGTCCGTAAAAAAAGAATAACGTATTCCTATATCATTTTACTCTTAACAAAATAATTTATCACCTCATAAATACCTATAATTTATTTTAGCCTACAAGGTTCAAAAATCTTCGTTTCATTCTAAATTTTTTTGCGTCCAATCAAACACCTTCACGTAGATCAAAACGAAGGAAGTACCATTTACCCTAACTTGCCCATCAATGTTTATAAATACTTGTAATTTGAAGTAGTTGTTTTCGTGTTATCTATAAGTCACTGGTTCGAATCGTAAATCATCTACATTACACCTCTCAATACGCTGCGATCTTTTTTCGGTATTTATTAACACGAAGTGCTTTGTACATCAAACTACCCTATGATCTTTTTTTATACATTGATTACGAGTAATCTGATCGTATAAATATTTTTTTTTTTGATTGTGTAGGGGCACATACATTTGGAAGAGCAAGATGTAGAACATTCAATCAAAGACTTTTCAACTTTAGTGGAAGTGGTAGACCTGATCCAACCATAGACTCTAATTATTTAAA</genome_strand>
        <mrna_strand>CTCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTGAAACCCTTGCTGTTATGATACCACAATTCACTAGAAAGGGAATGGATTTAACTGATCTTGTTGCTCTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCACATACATTTGGAAGAGCAAGATGTAGAACATTCAATCAAAGACTTTTCAACTTTAGTGGAAGTGGTAGACCTGATCCAACCATAGACTCTAATTATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276613" ref_strand="+" ref_description="SGN-E276613 [cLEN-17-L2]">
      <seq>tcattataaattaactcctacattttatgattgcacttgcccaaatgtcatacacattgtacgtgatgttatggagcaaattcaacgtagagatgttcgagctggggccaaaattattcgtcttcattttcatgattgcttcgttaacggttgtgatggatcaattttacttaataatgcaactggaattataagtgaaaaagatgcaaatccaaatgttggtgctggaggatttgatattgttgatgaaattaaaaccgcattggaaaatgagtgccctggcgttgtttcttgtgctgatattttagctcttgcatctgaaatcggagttgttttggctggaggtccatcatggcaagttcctttagggagaagagacagcttaacagcaaacagaagtggagctaatagtgatatcccaagccctactgaaacccttgctgttatgataccacaattcactagaaagggaatggatttaactgatcttgttgctctatcaggggcacatacatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="5513" stop="2813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5213" g_stop="5066" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4531" g_stop="4343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="337" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4342" i_stop="3895" i_length="448">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3894" g_stop="3729" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="503" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3728" i_stop="3130" i_length="599">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3129" g_stop="3113" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="520" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E276613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5213" e_stop="5066"/>
          <exon e_start="4531" e_stop="4343"/>
          <exon e_start="3894" e_stop="3729"/>
          <exon e_start="3129" e_stop="3113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAACGTACGTTAATTTCATTAGAAAAAAAAACATGATTTTCAATTTCTTTTACTAATGTTACTATTTAACATATGGTTTCATTTCATGTGCATGTTTATGTGTCTTGATACATTACGTTATTGACAACGTAAATAATTTTTATATTAACTAACAACATTGTAGTTTAACATATAATTATGGATTATATTTAACTAAAGATTTAAATAATATGCACTAATAGTTATATTGTTCATACTCATTAAAAATAATGTTGTATTTGCGTTAAATCCTTAAAAAATACACTATTTTGGAGGATTCAACACGGATTCATTGACGTTTTTAAAAAGTCCGAGCAACGTAGACAGATATAATAGTATGTATAAGTTTAAGTTTTACACACTGATAAGGTATAGTTAGAGAATAATTATGCTATCATAGAGTTCAACTTGTAAGTACCGTTTATAGTGATTTATTACGATAAATATTTTTTACATTGTTAATATATCGTAACTCGGCATATATAGTTAAATTAATGGTGATTTTAACTTTTGTATACAGGGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTGGTAAATCACACAATTTCGTCATAGCGTTTTACTTTTACATGTATTTCAAACGATTCTAATAAAAATAATTTTCTTAAGTTAAAAATTGATCGAAAAATAAATATATTTTTTTACTTCAAGAAGGTAGAAGTTATAAGGTTTGTATAATCATTTGTCAGACTATACACAGTATAATGTTATTGGTAAGTCAAAAAGTGTCAATATGTAATATATATAAATAAAAAAATATTTTTAACTATAATGTGTAATTTTTCGAAAAAAAGATACTGTCGATCAACACGCCTCAAGTATACGTGACTCCACCGCCTGATGTGATTTATAAGTCATGAATTCAAATTGTAAAAGTAATCATCTATGTTAACGTCAAAATAAACTGTCTACATTTCTTTTTTCTAATTCTATCTGAATACGAAATGCTTCGTTTATCGAACTATTTTTTTAAATTCAGGCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTGAAACCCTTGCTGTTATGATACCACAATTCACTAGAAAGGGAATGGATTTAACTGATCTTGTTGCTCTATCAGGTAATCGATTCGATTAATTCAAATTCGTATAATATTTTTTTTACTATATATGAGGGATTTTAGCATTCGTTGTTAAGAGGATTATAATTTCGGAGTCTGAACTCGAAATATCTAATTAAAGAACATGAGGACCTTAGCACCCCCTCAATAGTAAAATTTCATGTCGTATAATATTAGTCCGTAAAAAAAGAATAACGTATTCCTATATCATTTTACTCTTAACAAAATAATTTATCACCTCATAAATACCTATAATTTATTTTAGCCTACAAGGTTCAAAAATCTTCGTTTCATTCTAAATTTTTTTGCGTCCAATCAAACACCTTCACGTAGATCAAAACGAAGGAAGTACCATTTACCCTAACTTGCCCATCAATGTTTATAAATACTTGTAATTTGAAGTAGTTGTTTTCGTGTTATCTATAAGTCACTGGTTCGAATCGTAAATCATCTACATTACACCTCTCAATACGCTGCGATCTTTTTTCGGTATTTATTAACACGAAGTGCTTTGTACATCAAACTACCCTATGATCTTTTTTTATACATTGATTACGAGTAATCTGATCGTATAAATATTTTTTTTTTTGATTGTGTAGGGGCACATACATTTGGA</genome_strand>
        <mrna_strand>TCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTGAAACCCTTGCTGTTATGATACCACAATTCACTAGAAAGGGAATGGATTTAACTGATCTTGTTGCTCTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCACATACATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274066" ref_strand="+" ref_description="SGN-E274066 [cLEN-8-B16]">
      <seq>tcattataaattaactcctacattttatgattgcacttgcccaaatgtcatacacattgtacgtgatgttatggagcaaattcaacgtagagatgttctagctggggccaaaattattcgtcttcattttcatgattgcttcgttaacggttgtgatggatcaattttacttaataatgcaactggaattataagtgaaaaagatgcaaatccaaatgttggtgctggaggatttgatattgttgatgaaattaaaaccgcattggaaaatgagtgccctggcgttgtttcttgcgctgatattttagctcttgcatctgaaatcggagttgctttggctggaggtccatcatggcaagttcctttagggagaagagacagcttaacagcaaacagaagtggagctaatagtgatatcccaagccctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="5513" stop="3501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5213" g_stop="5066" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4531" g_stop="4343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="337" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4342" i_stop="3895" i_length="448">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3894" g_stop="3801" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="431" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E274066" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5213" e_stop="5066"/>
          <exon e_start="4531" e_stop="4343"/>
          <exon e_start="3894" e_stop="3801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAACGTACGTTAATTTCATTAGAAAAAAAAACATGATTTTCAATTTCTTTTACTAATGTTACTATTTAACATATGGTTTCATTTCATGTGCATGTTTATGTGTCTTGATACATTACGTTATTGACAACGTAAATAATTTTTATATTAACTAACAACATTGTAGTTTAACATATAATTATGGATTATATTTAACTAAAGATTTAAATAATATGCACTAATAGTTATATTGTTCATACTCATTAAAAATAATGTTGTATTTGCGTTAAATCCTTAAAAAATACACTATTTTGGAGGATTCAACACGGATTCATTGACGTTTTTAAAAAGTCCGAGCAACGTAGACAGATATAATAGTATGTATAAGTTTAAGTTTTACACACTGATAAGGTATAGTTAGAGAATAATTATGCTATCATAGAGTTCAACTTGTAAGTACCGTTTATAGTGATTTATTACGATAAATATTTTTTACATTGTTAATATATCGTAACTCGGCATATATAGTTAAATTAATGGTGATTTTAACTTTTGTATACAGGGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTGGTAAATCACACAATTTCGTCATAGCGTTTTACTTTTACATGTATTTCAAACGATTCTAATAAAAATAATTTTCTTAAGTTAAAAATTGATCGAAAAATAAATATATTTTTTTACTTCAAGAAGGTAGAAGTTATAAGGTTTGTATAATCATTTGTCAGACTATACACAGTATAATGTTATTGGTAAGTCAAAAAGTGTCAATATGTAATATATATAAATAAAAAAATATTTTTAACTATAATGTGTAATTTTTCGAAAAAAAGATACTGTCGATCAACACGCCTCAAGTATACGTGACTCCACCGCCTGATGTGATTTATAAGTCATGAATTCAAATTGTAAAAGTAATCATCTATGTTAACGTCAAAATAAACTGTCTACATTTCTTTTTTCTAATTCTATCTGAATACGAAATGCTTCGTTTATCGAACTATTTTTTTAAATTCAGGCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTG</genome_strand>
        <mrna_strand>TCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCTAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGCGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGCTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331056" ref_strand="+" ref_description="SGN-E331056 [cTOD-6-A24]">
      <seq>agatttaattaaaaaaacaaacaaaattgtttcaattattaattatgtcttttttaagatttattttagcaattttcttcttggtttcaattaattttggagtatcaaatgctcattataaattaactcctacattttatgattgcacttgcccaaatgtcatacacattgtacgtgatgttatggagcaaattcaacgtagagatgttcgagctggggccaaaattattcgtcttcattttcatgattgcttcgttaacggttgtgatggatcaattttacttaataatgcaactggaattataagtgaaaaagatgcaaatccaaatgttggtgctggaggatttgatattgttgatgaaattaaaaccgcattggaaaatgagtgccctggcgttgtttcttgtgctgatattttagctcttgcatctgaaatcggagttgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="5625" stop="4043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5325" g_stop="5066" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4531" g_stop="4343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="449" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E331056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5325" e_stop="5066"/>
          <exon e_start="4531" e_stop="4343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTAATTAAAAAAACAAACAAAATTGTTTCAATTATTAATTATGTCTTTTTTAAGATTTATTTTAGCAATTTTCTTCTTGGTTTCAATTAATTTTGGAGTATCAAATGCTCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAACGTACGTTAATTTCATTAGAAAAAAAAACATGATTTTCAATTTCTTTTACTAATGTTACTATTTAACATATGGTTTCATTTCATGTGCATGTTTATGTGTCTTGATACATTACGTTATTGACAACGTAAATAATTTTTATATTAACTAACAACATTGTAGTTTAACATATAATTATGGATTATATTTAACTAAAGATTTAAATAATATGCACTAATAGTTATATTGTTCATACTCATTAAAAATAATGTTGTATTTGCGTTAAATCCTTAAAAAATACACTATTTTGGAGGATTCAACACGGATTCATTGACGTTTTTAAAAAGTCCGAGCAACGTAGACAGATATAATAGTATGTATAAGTTTAAGTTTTACACACTGATAAGGTATAGTTAGAGAATAATTATGCTATCATAGAGTTCAACTTGTAAGTACCGTTTATAGTGATTTATTACGATAAATATTTTTTACATTGTTAATATATCGTAACTCGGCATATATAGTTAAATTAATGGTGATTTTAACTTTTGTATACAGGGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTG</genome_strand>
        <mrna_strand>AGATTTAATTAAAAAAACAAACAAAATTGTTTCAATTATTAATTATGTCTTTTTTAAGATTTATTTTAGCAATTTTCTTCTTGGTTTCAATTAATTTTGGAGTATCAAATGCTCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274065" ref_strand="+" ref_description="SGN-E274065 [cLEN-8-B14]">
      <seq>tacattttatgattgcacttgcccaaatgtcatacacattgtacgtgatgttatggagcaaattcaacgtaaagatgttcgagctggggccaaaattattcgtcttcattttcatgaatgcttcgttaacggttgtgatggatcaattttacttaatactgcaactggaattataagtgaaaaagatgcaaatccaaatgttggtgctggaggatttgatattgctgatgaaattaaaaccgcattggaaaatgagtgccctggcgttgtttcttgtgctgatattttagctcttgcatctgaaatcggagttgctttggctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="5495" stop="4042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5195" g_stop="5066" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4531" g_stop="4343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="319" r_length="189" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E274065" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5195" e_stop="5066"/>
          <exon e_start="4531" e_stop="4343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAACGTACGTTAATTTCATTAGAAAAAAAAACATGATTTTCAATTTCTTTTACTAATGTTACTATTTAACATATGGTTTCATTTCATGTGCATGTTTATGTGTCTTGATACATTACGTTATTGACAACGTAAATAATTTTTATATTAACTAACAACATTGTAGTTTAACATATAATTATGGATTATATTTAACTAAAGATTTAAATAATATGCACTAATAGTTATATTGTTCATACTCATTAAAAATAATGTTGTATTTGCGTTAAATCCTTAAAAAATACACTATTTTGGAGGATTCAACACGGATTCATTGACGTTTTTAAAAAGTCCGAGCAACGTAGACAGATATAATAGTATGTATAAGTTTAAGTTTTACACACTGATAAGGTATAGTTAGAGAATAATTATGCTATCATAGAGTTCAACTTGTAAGTACCGTTTATAGTGATTTATTACGATAAATATTTTTTACATTGTTAATATATCGTAACTCGGCATATATAGTTAAATTAATGGTGATTTTAACTTTTGTATACAGGGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTG</genome_strand>
        <mrna_strand>TACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAAAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGAATGCTTCGTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGATCAATTTTACTTAATACTGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGCTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355929" ref_strand="+" ref_description="SGN-E355929 [cLHT-21-D1]">
      <seq>atttaataataataaaaaattgtttcaattattaattatgtcttttttaagttttattttagcaattttcttcttggtttcaattaattttggagtatcaaatgctcattataaattaagtcctacattttatgattgcacttgcccaaatgttataaacattgtacatgatgttatggaaaaaattcaacgtagagatgttcgagctggggccaaaattattcgtcttcattttcatgattgctttgttaacggatgtgatggatcaattctacttgataatgcaactggaattataagtgaaaaagatgcaaatccaaatgttggtgctggaggatttgatattgttgatgaaattaaaactgcattggaaaatgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="5619" stop="4104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5318" g_stop="5066" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4531" g_stop="4404" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="381" r_length="128" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E355929" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5318" e_stop="5066"/>
          <exon e_start="4531" e_stop="4404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAAAACAAACAAAATTGTTTCAATTATTAATTATGTCTTTTTTAAGATTTATTTTAGCAATTTTCTTCTTGGTTTCAATTAATTTTGGAGTATCAAATGCTCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAACGTACGTTAATTTCATTAGAAAAAAAAACATGATTTTCAATTTCTTTTACTAATGTTACTATTTAACATATGGTTTCATTTCATGTGCATGTTTATGTGTCTTGATACATTACGTTATTGACAACGTAAATAATTTTTATATTAACTAACAACATTGTAGTTTAACATATAATTATGGATTATATTTAACTAAAGATTTAAATAATATGCACTAATAGTTATATTGTTCATACTCATTAAAAATAATGTTGTATTTGCGTTAAATCCTTAAAAAATACACTATTTTGGAGGATTCAACACGGATTCATTGACGTTTTTAAAAAGTCCGAGCAACGTAGACAGATATAATAGTATGTATAAGTTTAAGTTTTACACACTGATAAGGTATAGTTAGAGAATAATTATGCTATCATAGAGTTCAACTTGTAAGTACCGTTTATAGTGATTTATTACGATAAATATTTTTTACATTGTTAATATATCGTAACTCGGCATATATAGTTAAATTAATGGTGATTTTAACTTTTGTATACAGGGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTG</genome_strand>
        <mrna_strand>ATTTAATAATAATAAAAAATTGTTTCAATTATTAATTATGTCTTTTTTAAGTTTTATTTTAGCAATTTTCTTCTTGGTTTCAATTAATTTTGGAGTATCAAATGCTCATTATAAATTAAGTCCTACATTTTATGATTGCACTTGCCCAAATGTTATAAACATTGTACATGATGTTATGGAAAAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTTGTTAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGATGGATCAATTCTACTTGATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACTGCATTGGAAAATGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716985" ref_strand="+" ref_description="SGN-E716985 [FB18CD10]">
      <seq>gcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaatgtgagtgatcatgatgagttgttaagactattcgaggttcgtttaaaagggccttgcctctctttaccatcgttttcgcgaatcgtacacaattcttgttgtctctactacatttttcttagataagtgctgtataattagtgtagtatatgttgtgaatcttgcacaaagattacaaatttgtgtgcaaaagaataattcttgtaataagtggtcatgttttgcaatgttgtgtgtatttctgccaaatgtggttatcctattaacttttggctatttgaatcaacatcatggcttagagcaagcccaataaataaagaaaaaaaaaagcccnnnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="9998" stop="8768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9698" g_stop="9072" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="661"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E716985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9698" e_stop="9072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCAATGTTGTGTGTATTTCTGCCAAATGTGGTTATCCTATTAACTTTTGGCTATTTGAATCAACATCATGGCTTAGAGCAAGCCCAATAAATAAAGAAAAAAAAA</genome_strand>
        <mrna_strand>GCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCAATGTTGTGTGTATTTCTGCCAAATGTGGTTATCCTATTAACTTTTGGCTATTTGAATCAACATCATGGCTTAGAGCAAGCCCAATAAATAAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714736" ref_strand="+" ref_description="SGN-E714736 [FB12BB10]">
      <seq>attgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaatgtgagtgatcatgatgagttgttaagactattcgaggttcgtttaaaagggccttgcctctctttaccatcgttttcgcgaatcgtacacaattcttgttgtctctactacatttttcttagataagtgctgtataattagtgtagtatatgttgtgaatcttgcacaaagattacaaatttgtgtgcaaaagaataattcttgtaataagtggtcatgttttgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="10176" stop="8873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9876" g_stop="9170" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E714736" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9876" e_stop="9170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCAATGT</genome_strand>
        <mrna_strand>ATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262884" ref_strand="-" ref_description="SGN-E262884 [cLEG-59-B13]">
      <seq>agataaaatagaggcaatagcaaaatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaatgtgagtgatcatgatgagttgttaagactattcgaggttcgtttaaaagggccttgcctctctttaccatcgttttcgcgaatcgtacacaattcttgttgtctctactacatttttcttagataagtgctgtataattagtgtagtatatgttgtgaatcttgcacaaagattacaaatttgtgtgcaaaagaataattcttgtaataagtggtcatgttttgcaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="11342" stop="8873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11042" g_stop="10982" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9888" g_stop="9174" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="776" r_length="715" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="793"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E262884" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262884" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11042" e_stop="10982"/>
          <exon e_start="9888" e_stop="9174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCA</genome_strand>
        <mrna_strand>AGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250281" ref_strand="+" ref_description="SGN-E250281 [cLEG-6-O3]">
      <seq>caaaacatgttcacttattacaagaatgattcttttgcacacaaatttgtaatctttgtgcaagattcacaacatatactacactaattatacagcacttatctaagaaaaatgtagtagagacaacaagaattgtgtacgattcgcgaaaacgatggtaaagagaggcaaggcccttttaaacgaacctcgaatagtcttaacaactcatcatgatcactcacattcatgtttattcaatcaacgtcgggcagtagaactgcaggtgttcgtttacactgattctacgacaacaataagaaacacagaagtggttcggggcagtaccgttattagctgagcactgtagaggaggagaaggaagtctagaacttgacaaactcttcacttctgccaaaacacagtaaaacaaccacaccacacttttttttggatgttcaagaaagaccgattacctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="8876" stop="9936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9176" g_stop="9636" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E250281" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9176" e_stop="9636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACATGACCACTTATTACAAGAATTATTCTTTTGCACACAAATTTGTAATCTTTGTGCAAGATTCACAACATATACTACACTAATTATACAGCACTTATCTAAGAAAAATGTAGTAGAGACAACAAGAATTGTGTACGATTCGCGAAAACGATGGTAAAGAGAGGCAAGGCCCTTTTAAACGAACCTCGAATAGTCTTAACAACTCATCATGATCACTCACATTCATGTTTATTCAATCAACGTCGGGCAGTAGAACTGCAGGTGTTCGTTTACACTGATTCTACGACAACAATAAGAAACACAGAAGTGGTTCGGGGCAGTACCGTTATTAGCTGAGCACTGTAGAGGAGGAGAAGGAAGTCTAGAACTTGACAAACTCTTCACTTCTGCCAAAACACAGTAAAACAACCACACCACACTTTTTTTTGGATGTTCAAGAAAGACCGATTACCTTTCC</genome_strand>
        <mrna_strand>CAAAACATGTTCACTTATTACAAGAATGATTCTTTTGCACACAAATTTGTAATCTTTGTGCAAGATTCACAACATATACTACACTAATTATACAGCACTTATCTAAGAAAAATGTAGTAGAGACAACAAGAATTGTGTACGATTCGCGAAAACGATGGTAAAGAGAGGCAAGGCCCTTTTAAACGAACCTCGAATAGTCTTAACAACTCATCATGATCACTCACATTCATGTTTATTCAATCAACGTCGGGCAGTAGAACTGCAGGTGTTCGTTTACACTGATTCTACGACAACAATAAGAAACACAGAAGTGGTTCGGGGCAGTACCGTTATTAGCTGAGCACTGTAGAGGAGGAGAAGGAAGTCTAGAACTTGACAAACTCTTCACTTCTGCCAAAACACAGTAAAACAACCACACCACACTTTTTTTTGGATGTTCAAGAAAGACCGATTACCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708559" ref_strand="+" ref_description="SGN-E708559 [FA36AD09]">
      <seq>gcataatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaatgtgagtgatcatgatgagttgttaagactattcgaggttcgtttaaaagggccttgcctctctttaccatcgttttcgcgaatcgtacacaattcttgttgtctctactacatttttcttagataagtgctgtataattagtgtagtatatgttgtgaatcttgcacaaagattacaaatttgtgtgcaaaagaataattcttgtaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="11323" stop="8890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11023" g_stop="10982" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9888" g_stop="9190" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="741" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="753"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E708559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11023" e_stop="10982"/>
          <exon e_start="9888" e_stop="9190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAA</genome_strand>
        <mrna_strand>GCATAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708796" ref_strand="+" ref_description="SGN-E708796 [FA36DB09]">
      <seq>ccataatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaatgtgagtgatcatgatgagttgttaagactattcgaggttcgtttaaaagggccttgcctctctttaccatcgttttcgcgaatcgtacacaattcttgttgtctctactacatttttcttagataagtgctgtataattagtgtagtatatgttgtgaatcttgcacaaagattacaaatttgtgtgcaaaagaataattcttgtaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="11322" stop="8890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11023" g_stop="10982" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9888" g_stop="9190" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="741" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="753"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E708796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11023" e_stop="10982"/>
          <exon e_start="9888" e_stop="9190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAA</genome_strand>
        <mrna_strand>CCATAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746163" ref_strand="+" ref_description="SGN-E746163 [GI|47104891]">
      <seq>gactttggactctttttttcttcattttgaacctaaaaatccaatcttggagacacccattgaaggaaaaatcaagattttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatggaagtataaagccaaggtgctcttatccgtgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaacattcggaatcaagggtggtgctgcaggaggtggttacagtcaagttataccaatggatgagttcaatctccacctaactggagatattcatgcaataacagcagcaaataaccttctggctgctgcgattgatacacgaatcttccatgaatctacgcagtctgacaaggctctctttaacaggttatgcccaccaaataaagaaggtaaacggaagttctgtgacattatgtttaggcgtttgaagaaacttggtattgacaagacggcccccgaagaccttactcctgaagagagcagtaaatttgctaggctagatatagatcctgcttccgtcacatggagaagagtcatggatgtcaatgataggtttttgagaaaaattaccatcggtcagggacctgaagagaaggggatggtccgggagacagcatttgacatttcagttgctagtgaaataatggcagttctagccctcacgacatcactagctgatatgcgagagaggctggggaaaatggtagtcgggaatagcaaggccggtgatccagttacagctgatgatcttggggttggaggcgctttgactgttttgatgaaagatgccattaatcctactcttatgcagactcttgagggcacccctgttcttgttcatgcctgtccgtttgcaaatattgctcatggaaattcatctattgttgctgacaagattgcattaaagctcgtaggacctggtggctttgtggtcacagaggctggctttggttctgatattgggacagagaagtttatgaacatcaaatgtcgatatagtggcttgaaaccacagtgcgctattattgtggccacagtaagagcccttaaaatgcatggtggaggacctcaagtcacagctggaaagcctctcgacaaggcctatgtaactgagaatctcggactagtggaagctggttgtgtgaatcttgctaggcatatttcaaatacaaaagcttatggtgtaaatgttgtggttgccgtcaatgcattctcaactgatactgaagcagaactaaatgcagttaaaaatgctgcattagctgcaggagcatttgattcagtaatttgtactcatcatgcccatggtggcaaaggagcggtggacctcggaatcgcagttcagaaggcctgtgagaatgcaaaacagtcactaaaattcctgtacccgctggatataggtatcaaagataaaatagaggcaatagcaaaatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaatgtgggtgatcatgatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15852" stop="9084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15552" g_stop="15284" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="418" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="11966" g_length="1176"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="1594" r_length="1176" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11965" i_stop="11129" i_length="837">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11128" g_stop="10982" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1595" r_stop="1741" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9888" g_stop="9383" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1742" r_stop="2247" r_length="506" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2248" polyA_stop="2262"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E746163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2248</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15552" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="11966"/>
          <exon e_start="11128" e_stop="10982"/>
          <exon e_start="9888" e_stop="9383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGTTCTAGCCCTCACGACATCACTAGCTGATATGCGAGAGAGGCTGGGGAAAATGGTAGTCGGGAATAGCAAGGCCGGTGATCCAGTTACAGCTGATGATCTTGGGGTTGGAGGCGCTTTGACTGTTTTGATGAAAGATGCCATTAATCCTACTCTTATGCAGACTCTTGAGGGCACCCCTGTTCTTGTTCATGCCGGTCCGTTTGCAAATATTGCTCATGGAAATTCATCTATTGTTGCTGACAAGATTGCATTAAAGCTCGTAGGACCTGGTGGCTTTGTGGTCACAGAGGCTGGCTTTGGTTCTGATATTGGGACAGAGAAGTTTATGAACATCAAATGTCGATATAGTGGCTTGAAACCACAGTGCGCTATTATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCGGTAAGTCTTCCATGTAGTATTGGGCCTCTGTCGATCAGTGCTCATTTCCCTACCCTCCTGCACACACAAAAAGAATTTAAAAAACAAAAAAAGATGTCTGAAAAGCTAAGTTGCACGGACTCTTTACTTTTGATGCTGCACCCATGTCGGGTTCTCCAAAAGTACACTACTTTTGGAGAATCTGACAAGCACCCATTGGCATTTTTATAAAGTCCGAGCAACATAACTGAATAGAATGTTTAATTCAAAACAGAATACATGCTAAAAAGCTCAAAATATTCAGAGAAGAGAAGCCTTTATCCAAATTGTCAATATACTTTTCTGCAGAATACTTTGTTCAGGACTTACTAAATATCCTAACAAATTGATGATAGAGCCAATAATGTATGCATGATTGGCGGTCCATTCTTTTGTTATAGCAAGAGCTTGAAGCTAATTTTGTTTGTCATAATGGCCGCACTAATTGTTTATTATCTCAGAATGAACAAAAAGAAGCAAGTCAGAAGCTTTCTACTCTATACTGAACAACTTTGGAATTGGAACTATGTACTTATCTAGCCACGCCTCATAGATCTTTGTGGTTTAGGAGTGTTAATCAATTGAAAGTTTTATATTCGTTTGGGACTAGTTTATTAGATTGAAGATTCTCACACTTTGGCATGAGTTCATGTGATGTAATAAAGATATGACCTTATAAGAATTTCTAAGTTGTTTCAATCCTCCATCCTTATTTGAACAATAACATGAAAAACTTGTACATGTGTTTTGTTGACCGTTTTGCTATGGGATTACTAGTTGCTAATCTGAAATACTGATAAGCCGGAATCGTTTATTCAGGTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGA</genome_strand>
        <mrna_strand>GACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTAT-GGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGTTCTAGCCCTCACGACATCACTAGCTGATATGCGAGAGAGGCTGGGGAAAATGGTAGTCGGGAATAGCAAGGCCGGTGATCCAGTTACAGCTGATGATCTTGGGGTTGGAGGCGCTTTGACTGTTTTGATGAAAGATGCCATTAATCCTACTCTTATGCAGACTCTTGAGGGCACCCCTGTTCTTGTTCATGCCTGTCCGTTTGCAAATATTGCTCATGGAAATTCATCTATTGTTGCTGACAAGATTGCATTAAAGCTCGTAGGACCTGGTGGCTTTGTGGTCACAGAGGCTGGCTTTGGTTCTGATATTGGGACAGAGAAGTTTATGAACATCAAATGTCGATATAGTGGCTTGAAACCACAGTGCGCTATTATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGGGTGATCATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700735" ref_strand="+" ref_description="SGN-E700735 [FA14AA11]">
      <seq>attgtggccacagtaagagcccttaaaatgcatggtggaggacctcaagtcacagctggaaagcctctcgacaaggcctatgtaactgagaatctcggactagtggaagctggttgtgtgaatcttgctaggcatatttcaaatacaaaagcttatggtgtaaatgttgtggttgccgtcaatgcattctcaactgatactgaagcagaactaaatgcagttaaaaatgctgcattagctgcaggagcatttgattcagtaatttgtactcatcatgcccatggtggcaaaggagcggtggacctcggaatcgcagttcagaaggcctgtgagaatgcaaaacagtcactaaaattcctgtacccgctggatataggtatcaaagataaaatagaggcaatagcaaaatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctctacagtgctcagctaataacggtactgccccgaaccacttctgtgtttcttattgttgtcgtagaatcagtgtaaacgaacacctgcagttctactgcccgacgttgattgaataaacatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="12562" stop="9100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12262" g_stop="11966" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11965" i_stop="11129" i_length="837">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11128" g_stop="10982" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="444" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9888" g_stop="9400" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="933" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E700735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12262" e_stop="11966"/>
          <exon e_start="11128" e_stop="10982"/>
          <exon e_start="9888" e_stop="9400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCGGTAAGTCTTCCATGTAGTATTGGGCCTCTGTCGATCAGTGCTCATTTCCCTACCCTCCTGCACACACAAAAAGAATTTAAAAAACAAAAAAAGATGTCTGAAAAGCTAAGTTGCACGGACTCTTTACTTTTGATGCTGCACCCATGTCGGGTTCTCCAAAAGTACACTACTTTTGGAGAATCTGACAAGCACCCATTGGCATTTTTATAAAGTCCGAGCAACATAACTGAATAGAATGTTTAATTCAAAACAGAATACATGCTAAAAAGCTCAAAATATTCAGAGAAGAGAAGCCTTTATCCAAATTGTCAATATACTTTTCTGCAGAATACTTTGTTCAGGACTTACTAAATATCCTAACAAATTGATGATAGAGCCAATAATGTATGCATGATTGGCGGTCCATTCTTTTGTTATAGCAAGAGCTTGAAGCTAATTTTGTTTGTCATAATGGCCGCACTAATTGTTTATTATCTCAGAATGAACAAAAAGAAGCAAGTCAGAAGCTTTCTACTCTATACTGAACAACTTTGGAATTGGAACTATGTACTTATCTAGCCACGCCTCATAGATCTTTGTGGTTTAGGAGTGTTAATCAATTGAAAGTTTTATATTCGTTTGGGACTAGTTTATTAGATTGAAGATTCTCACACTTTGGCATGAGTTCATGTGATGTAATAAAGATATGACCTTATAAGAATTTCTAAGTTGTTTCAATCCTCCATCCTTATTTGAACAATAACATGAAAAACTTGTACATGTGTTTTGTTGACCGTTTTGCTATGGGATTACTAGTTGCTAATCTGAAATACTGATAAGCCGGAATCGTTTATTCAGGTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAAT</genome_strand>
        <mrna_strand>ATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215098" ref_strand="+" ref_description="SGN-E215098 [cLEC-78-J13]">
      <seq>gatactgaagcagaactaaatgcagttaaaaatgctgcattagctgcaggagcatttgattcagtaatttgtactcatcatgcccatggtggcaaaggagcggtggacctcggaatcgcagttcagaaggcctgtgagaatgcaaaacagtcactaaaattcctgtacccgctggatataggtatcaaagataaaatagaggcaatagcaaaatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactggaaaggtaatcggtctttcttgaacatccaaaaaaaagtgtggtgtggttgttttactgtgttttggcagaagtgaagagtttgtcaagttctagacttccttctcctcctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="12367" stop="9222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12067" g_stop="11966" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11965" i_stop="11129" i_length="837">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11128" g_stop="10982" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="249" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9888" g_stop="9522" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="616" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E215098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12067" e_stop="11966"/>
          <exon e_start="11128" e_stop="10982"/>
          <exon e_start="9888" e_stop="9522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCGGTAAGTCTTCCATGTAGTATTGGGCCTCTGTCGATCAGTGCTCATTTCCCTACCCTCCTGCACACACAAAAAGAATTTAAAAAACAAAAAAAGATGTCTGAAAAGCTAAGTTGCACGGACTCTTTACTTTTGATGCTGCACCCATGTCGGGTTCTCCAAAAGTACACTACTTTTGGAGAATCTGACAAGCACCCATTGGCATTTTTATAAAGTCCGAGCAACATAACTGAATAGAATGTTTAATTCAAAACAGAATACATGCTAAAAAGCTCAAAATATTCAGAGAAGAGAAGCCTTTATCCAAATTGTCAATATACTTTTCTGCAGAATACTTTGTTCAGGACTTACTAAATATCCTAACAAATTGATGATAGAGCCAATAATGTATGCATGATTGGCGGTCCATTCTTTTGTTATAGCAAGAGCTTGAAGCTAATTTTGTTTGTCATAATGGCCGCACTAATTGTTTATTATCTCAGAATGAACAAAAAGAAGCAAGTCAGAAGCTTTCTACTCTATACTGAACAACTTTGGAATTGGAACTATGTACTTATCTAGCCACGCCTCATAGATCTTTGTGGTTTAGGAGTGTTAATCAATTGAAAGTTTTATATTCGTTTGGGACTAGTTTATTAGATTGAAGATTCTCACACTTTGGCATGAGTTCATGTGATGTAATAAAGATATGACCTTATAAGAATTTCTAAGTTGTTTCAATCCTCCATCCTTATTTGAACAATAACATGAAAAACTTGTACATGTGTTTTGTTGACCGTTTTGCTATGGGATTACTAGTTGCTAATCTGAAATACTGATAAGCCGGAATCGTTTATTCAGGTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTA</genome_strand>
        <mrna_strand>GATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338781" ref_strand="+" ref_description="SGN-E338781 [cTOE-21-F21]">
      <seq>aatgcattctcaactgatactgaagcagaactaaatgcagttaaaaatgctgcattagctgcaggagcatttgattcagtaatttgtactcatcatgcccatggtggcaaaggagcggtggacctcggaatcgcagttcagaaggcctgtgagaatgcaaaacagtcactaaaattcctgtacccgctggatataggtatcaaagataaaatagaggcaatagcaaaatcatatggtgctgatggagtagagtactctgaagaggctgagaaacagattgagatgtataccaaacaaggatttacaaatctgccaatttgcatggcgaaaacacaatattcattttcacatgatgccgggaagaagggcgctcctagtggattcatcctgcccatcagggacgttagagcaagcattggcgcaggattcatttatcctcttgttggaacaatgagcacaatgcctggtttgcctacgaggccttgtttctacgagattgacatcgacacatctactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="12382" stop="9335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12082" g_stop="11966" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11965" i_stop="11129" i_length="837">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11128" g_stop="10982" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="264" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9888" g_stop="9635" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="518" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E338781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12082" e_stop="11966"/>
          <exon e_start="11128" e_stop="10982"/>
          <exon e_start="9888" e_stop="9635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCGGTAAGTCTTCCATGTAGTATTGGGCCTCTGTCGATCAGTGCTCATTTCCCTACCCTCCTGCACACACAAAAAGAATTTAAAAAACAAAAAAAGATGTCTGAAAAGCTAAGTTGCACGGACTCTTTACTTTTGATGCTGCACCCATGTCGGGTTCTCCAAAAGTACACTACTTTTGGAGAATCTGACAAGCACCCATTGGCATTTTTATAAAGTCCGAGCAACATAACTGAATAGAATGTTTAATTCAAAACAGAATACATGCTAAAAAGCTCAAAATATTCAGAGAAGAGAAGCCTTTATCCAAATTGTCAATATACTTTTCTGCAGAATACTTTGTTCAGGACTTACTAAATATCCTAACAAATTGATGATAGAGCCAATAATGTATGCATGATTGGCGGTCCATTCTTTTGTTATAGCAAGAGCTTGAAGCTAATTTTGTTTGTCATAATGGCCGCACTAATTGTTTATTATCTCAGAATGAACAAAAAGAAGCAAGTCAGAAGCTTTCTACTCTATACTGAACAACTTTGGAATTGGAACTATGTACTTATCTAGCCACGCCTCATAGATCTTTGTGGTTTAGGAGTGTTAATCAATTGAAAGTTTTATATTCGTTTGGGACTAGTTTATTAGATTGAAGATTCTCACACTTTGGCATGAGTTCATGTGATGTAATAAAGATATGACCTTATAAGAATTTCTAAGTTGTTTCAATCCTCCATCCTTATTTGAACAATAACATGAAAAACTTGTACATGTGTTTTGTTGACCGTTTTGCTATGGGATTACTAGTTGCTAATCTGAAATACTGATAAGCCGGAATCGTTTATTCAGGTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAGGTATATTGTTCTATTGCTCATACCTATTGCTGCACTTCCTTTCTAATGTATTTGTCTTTCTTTATGACGTAAACATTATTTTGAGCTGACGGTTTATAGGAAACAACCTCTCTACCTTTTTAAGGTAGGGGTTAGGCCTGCATACACACCACCCTTCCCAGTTCTCATTTGTGGAATTACACTGGGTATTTTGTTGTTGTTTTTGTACGTACATACACAAATTCATAAAAGCAATTTGCTGTTAAACATCTTTTATAGTTGCTACAGATGTGAGAGTTAAGTTTACATTTCGTAGATGCTTTGCTTTGTAACGCCTGTTATCTGTTACTTGTTCTGTGAGTTGGTAGGACCGAGTCGAGTTAATGAATCTAAAAGTAAAATCAAAGGTAAGAGTGGTCACCTTTTTTACTGTAAGTATATAGATTAAGCGGCATCAGAACATAGAAACTATCACTGCGTTTGAGATTTTTCCAGTGTTATTAAAAGCAAAAAGCGCAAGAAATTTCTAAGGTTTGTTGGAGCTTTAAGCACAAAGTGCAAATAAAGCGTAGGCTTTAATGAAAAAAGGTGCAAAGTGAGAATATATATATGTGTGTGTGTGTGTGTGTGTTTAGTTCAAAACTAATTAACAATTATAAGCATGGATGACAAATATATGAAGTAAGAAACTGAATTTTCTATTACAATAAAGTAAAATATTACTTGTTTCGTGTCGCCTCTTCATAAGAGGGTCATTGACAAGGAAATGTATGCCTTAGAACAATGACACTGAATCGAACATTAAGTGAGGTGAAATGCTCAACAACGTTTTAAGCCTCGCTTTAGGGCTTAAGCACACCTTTGACAACATTGGATTGTTCTGTAGTTCATAGTCTGATAGAAAACTTCGATATTGTTGAAAGCTATGTTGCATGGGCTCTCCAAGGATGTTGTTTTACCCGTATTGGATCCTCCAAAAATTCTCTACTTTTGAAAGATCCGACACACACGCCGCAACATTTTGGAGAAGTCCAAGCATTATAGGTTGAAAGCATAGTTACATACATTTGGTCAAATATTATTAACAAGGACTTTGATATCTTTTGCTATTTAGGCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGG</genome_strand>
        <mrna_strand>AATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255235" ref_strand="+" ref_description="SGN-E255235 [cLEG-31-N7]">
      <seq>tattgctcatggaaattcatctattgttgctgacaagattgcattaaagctcgtaggacctggtggctttgtggtcacagaggctggctttggttctgatattgggacagagaagtttatgaacatcaaatgtcgatatagtggcttgaaaccacagtgcgctattattgtggccacagtaagagcccttaaaatgcatggtggaggacctcaagtcacagctggaaagcctctcgacaaggcctatgtaactgagaatctcggactagtggaagctggttgtgtgaatcttgctaggcatatttcaaatacaaaagcttatggtgtaaatgttgtggttgccgtcaatgcattctcaactgatactgaagcagaactaagtgcagttaaaaatgctggattagctgcgggagcatttgattcagtaatttgtactcatcatgcccatggtggcaaaggagcggtggacctcggaatcgcagttcataaggcctgtgagaatgcaaaacagtcactaaaattcctgtacccgctggatataggtatcaaagataaaatagaggccatagcaaaatcatatggtgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="12728" stop="10702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12428" g_stop="11966" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11965" i_stop="11129" i_length="837">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11128" g_stop="11002" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="590" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E255235" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12428" e_stop="11966"/>
          <exon e_start="11128" e_stop="11002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTCATGGAAATTCATCTATTGTTGCTGACAAGATTGCATTAAAGCTCGTAGGACCTGGTGGCTTTGTGGTCACAGAGGCTGGCTTTGGTTCTGATATTGGGACAGAGAAGTTTATGAACATCAAATGTCGATATAGTGGCTTGAAACCACAGTGCGCTATTATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCGGTAAGTCTTCCATGTAGTATTGGGCCTCTGTCGATCAGTGCTCATTTCCCTACCCTCCTGCACACACAAAAAGAATTTAAAAAACAAAAAAAGATGTCTGAAAAGCTAAGTTGCACGGACTCTTTACTTTTGATGCTGCACCCATGTCGGGTTCTCCAAAAGTACACTACTTTTGGAGAATCTGACAAGCACCCATTGGCATTTTTATAAAGTCCGAGCAACATAACTGAATAGAATGTTTAATTCAAAACAGAATACATGCTAAAAAGCTCAAAATATTCAGAGAAGAGAAGCCTTTATCCAAATTGTCAATATACTTTTCTGCAGAATACTTTGTTCAGGACTTACTAAATATCCTAACAAATTGATGATAGAGCCAATAATGTATGCATGATTGGCGGTCCATTCTTTTGTTATAGCAAGAGCTTGAAGCTAATTTTGTTTGTCATAATGGCCGCACTAATTGTTTATTATCTCAGAATGAACAAAAAGAAGCAAGTCAGAAGCTTTCTACTCTATACTGAACAACTTTGGAATTGGAACTATGTACTTATCTAGCCACGCCTCATAGATCTTTGTGGTTTAGGAGTGTTAATCAATTGAAAGTTTTATATTCGTTTGGGACTAGTTTATTAGATTGAAGATTCTCACACTTTGGCATGAGTTCATGTGATGTAATAAAGATATGACCTTATAAGAATTTCTAAGTTGTTTCAATCCTCCATCCTTATTTGAACAATAACATGAAAAACTTGTACATGTGTTTTGTTGACCGTTTTGCTATGGGATTACTAGTTGCTAATCTGAAATACTGATAAGCCGGAATCGTTTATTCAGGTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATG</genome_strand>
        <mrna_strand>TATTGCTCATGGAAATTCATCTATTGTTGCTGACAAGATTGCATTAAAGCTCGTAGGACCTGGTGGCTTTGTGGTCACAGAGGCTGGCTTTGGTTCTGATATTGGGACAGAGAAGTTTATGAACATCAAATGTCGATATAGTGGCTTGAAACCACAGTGCGCTATTATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAGTGCAGTTAAAAATGCTGGATTAGCTGCGGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACCTCGGAATCGCAGTTCATAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCCATAGCAAAATCATATGGTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266693" ref_strand="+" ref_description="SGN-E266693 [cLEI-5-D2]">
      <seq>ccgggctgcaggggaagttctgtgacattatgtttaggcgtttgtttaaacttggtattgacaagacggcccccgaggaccttactcctgaagagagcagccaacatgctaggctagatatagatcctgcttccgtcacatggagaagagtcatggatgtcaatgataggtttttgagaaaaattaccatcggtcagggacctgaagagaaggggatggtccgggagacagcatttgacatttcaactgctagtgaaataatggcagttctagccctgacgacatcactagctgatatgcgagagaggctggggaaaatggtagtcgggaatagcaaggccggtgatccagttacagctgatgatcttggggttggaggcgcttcgactgttttgatgaaagatgccattaatcctactcttatgcagactcttgagggcacccctgttcttgttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="13191" stop="12146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12891" g_stop="12446" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="458" r_length="446" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E266693" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12891" e_stop="12446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGTTCTAGCCCTCACGACATCACTAGCTGATATGCGAGAGAGGCTGGGGAAAATGGTAGTCGGGAATAGCAAGGCCGGTGATCCAGTTACAGCTGATGATCTTGGGGTTGGAGGCGCTTTGACTGTTTTGATGAAAGATGCCATTAATCCTACTCTTATGCAGACTCTTGAGGGCACCCCTGTTCTTGTTCAT</genome_strand>
        <mrna_strand>GGAAGTTCTGTGACATTATGTTTAGGCGTTTGTTTAAACTTGGTATTGACAAGACGGCCCCCGAGGACCTTACTCCTGAAGAGAGCAGCCAACATGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAACTGCTAGTGAAATAATGGCAGTTCTAGCCCTGACGACATCACTAGCTGATATGCGAGAGAGGCTGGGGAAAATGGTAGTCGGGAATAGCAAGGCCGGTGATCCAGTTACAGCTGATGATCTTGGGGTTGGAGGCGCTTCGACTGTTTTGATGAAAGATGCCATTAATCCTACTCTTATGCAGACTCTTGAGGGCACCCCTGTTCTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298118" ref_strand="+" ref_description="SGN-E298118 [cLEW-9-A15]">
      <seq>gacggcccccgaagaccttactcctgaagagagcagtaaatttgctaggctagatatagatcctgcttccgtcacatggagaagagtcatggatgtcaatgataggtttttgagaaaaattaccatccgtcacggacctgaaaagaaagggatggtccgggagacagcatttgacatttcagttgctagtgaaataatggcagttctagccctcacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="13139" stop="12321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12839" g_stop="12621" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E298118" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12839" e_stop="12621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGTTCTAGCCCTCACGAC</genome_strand>
        <mrna_strand>GACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCCGTCACGGACCTGAAAAGAAAGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGTTCTAGCCCTCACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739822" ref_strand="+" ref_description="SGN-E739822 [LC19AB03]">
      <seq>ccttgaaggaaaaatcaagattttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaacattcggaatcaagggtggtgctgcaggaggtggttacagtcaagttataccaatggatgagttcaatctccacctaactggagatattcatgcaataacagcagcaaataaccttctggctgctgcgattgatacacgaatcttccatgaatctacgcagtctgacaaggctctctttaacaggttatgcccaccaaataaagaaggtaaacggaagttctgtgacattatgtttaggcgtttgaagaaacttggtattgacaagacggcccccgaagaccttactcctgaagagagcagtaaatttgctaggctagatatagatcctgcttccgtcacatggagaagagtcatggatgtcaatgataggtttttgagaaaaattaccatcggtcaggnacctgaagagaaggggatggtccgggagacagcatttgacatttcagttgctagtgaaataatggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15796" stop="12336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15495" g_stop="15284" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="362" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="12636" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="868" r_length="506" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E739822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15495" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="12636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGT</genome_strand>
        <mrna_strand>CCTTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGNACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738824" ref_strand="+" ref_description="SGN-E738824 [LC15AD07]">
      <seq>ttttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaacattcggaatcaagggtggtgctgcaggaggtggttacagtcaagttataccaatggatgagttcaatctccacctaactggagatattcatgcaataacagcagcaaataaccttctggctgctgcgattgatacacgaatcttccatgaatctacgcagtctgacaaggctctctttaacaggttatgcccaccaaataaagaaggtaaacggaagttctgtgacattatgtttaggcgtttgaagaaacttggtattgacaagacggcccccgaagaccttactcctgaagagagcagtaaatttgctaggctagatatagatcctgcttccgtcacatggagaagagtcatggatgtcaacgataggtttttgagaaaaattaccatcggtcagggacctgaagagaaggggatggtccgggagacagcatttgacatttcagttgctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15775" stop="12349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15475" g_stop="15284" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="342" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="12649" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="835" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E738824" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15475" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="12649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTG</genome_strand>
        <mrna_strand>TTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAACGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740759" ref_strand="+" ref_description="SGN-E740759 [LC22DA10]">
      <seq>cctttgaaggaaaaatcaagattttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaacattcggaatcaagggtggtgctgcaggaggtggttacagtcaagttataccaatggatgagttcaatctccacctaactggagatattcatgcaataacagcagcaaataaccttctggctgctgcgattgatacacgaatcttccatgaatctacgcagtctgacaaggctctctttaacaggttatgcccaccaaataaagaaggtaaacggaagttctgtgacattatgtttaggcgtttgaagaaacttggtattgacaagacggcccccgaagaccttactcctgaagagagcagtaaatttgctaggctagatatagatcctgcttccgtcacatggagaagagtcatggatgtcaatgataggtttttgagaaaaattaccatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15796" stop="12411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15496" g_stop="15284" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="363" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="12711" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="794" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E740759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15496" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="12711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGG</genome_strand>
        <mrna_strand>CCTTTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735676" ref_strand="+" ref_description="SGN-E735676 [LC02CC03]">
      <seq>ctcccattgaaggaaaaatctggattttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccatgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccagaggtggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaacattcggaatcatgggtggtgctgcaagaggtggttacagtcaagatataccaatggatgagttcaatctccacctatctggagatattcatgcaataacagcagcaaataaccttctggctgctgcgattgatacacgaatcttccatgaatctacgcagactgacaaggctctctttaacaggttatgcccaccaaataaagaaggtaaacggaagttctgtgacattatgtttatgcgtatgaagaaacttggtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15799" stop="12543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15499" g_stop="15284" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="366" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="12843" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="665" r_length="299" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E735676" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15499" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="12843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGA</genome_strand>
        <mrna_strand>CTCCCATTGAAGGAAAAATCTGGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCATGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCAGAGGTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCATGGGTGGTGCTGCAAGAGGTGGTTACAGTCAAGATATACCAATGGATGAGTTCAATCTCCACCTATCTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGACTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTATGCGTATGAAGAAACTTGGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333679" ref_strand="+" ref_description="SGN-E333679 [cTOD-22-P16]">
      <seq>aaagttcgatgcatccatcacacattagatagaattcttttcaggaaaggcctcaaattaagattaatctaagccaaagcgtcaacatctcttcagcaaagccaacaactttttttttttagctttttctcacataccccattgccaataattgactttggactctttttttcttcattttgaacctaaaaatccaatcttggagacacccattgaaggaaaaatcaagattttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaacattcggaatcaagggtggtgctgcaggaggtggttacagtcaagttataccaatggatgagttcaatctccacctaactggagatattcatgcaataacagcagcaaataaccttctggctgctgcgattgatacacgaatcttccatgaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="16004" stop="12649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15704" g_stop="15284" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="572" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="12949" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="765" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E333679" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15704" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="12949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCGATGCATCCATCACACATTAGATAGAATTCTTTTCAGGAAAGGCCTCAAATTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAAC-TTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTA</genome_strand>
        <mrna_strand>AAAGTTCGATGCATCCATCACACATTAGATAGAATTCTTTTCAGGAAAGGCCTCAAATTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAACTTTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700432" ref_strand="+" ref_description="SGN-E700432 [FA13AD10]">
      <seq>ccccttttaagattaatctaagccaaagcgtcaacatctcttcagcaaagccaacaactttttttttttagctttttctcacataccccattgccaataattgactttggactctttttttcttcattttgaacctaaaaatccaatcttggaaacacccattgaaggaaaaatcaaaattttgaagtttttaaataaggggggtataaaaaatcatgggaaaaacaacaaggaaacttgaagttgtttctcctgttccagcaaatataaatattgctaactctgttgaacctcttcatatttctgagattgctcaaaaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgatgaggttgaaggaagtgaggatgggtattatgtggtggttgaaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttaataaaaaggttgtgacttgtgtccgccaaccatcacaaggaccaacattcggaatccagggtggcgctgcaggaggtggttacagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15947" stop="12762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15653" g_stop="15284" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="521" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="13062" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="601" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E700432" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15653" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="13062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAAC-TTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCA</genome_strand>
        <mrna_strand>CCCCTTTTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAACTTTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAAACACCCATTGAAGGAAAAATCAAAATTTTGAAGTTTTTAAATAAGGGGGGTATAAAAAATCATGGGAAAAACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAAATATAAATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAAAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGAAGGAAGTGAGGATGGGTATTATGTGGTGGTTGAAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTAATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACTTGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCCAGGGTGGCGCTGCAGGAGGTGGTTACAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700650" ref_strand="+" ref_description="SGN-E700650 [FA13DA05]">
      <seq>tttttttttagctttttctcacataccccattgccaataattgactttggactcttttttccttcattttgaacctaaaaatccaatcttggaaacacccattgaaggaaaaatcaaaattttgaagtttttaaataaggggtgtataaaaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcaaatatagatattgctaactctgttgaacctcttcatatttctgaaattgctcaaaaactcaatcttacctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgataaggttgaaggaagtgaggatgggtattatgtggtggttggaggaataactccaccccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtgtccgccaaccatcacaaggaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15894" stop="12805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15594" g_stop="15284" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="461" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13141" g_stop="13105" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="498" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E700650" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15594" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
          <exon e_start="13141" e_stop="13105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAGGTAACTTTGAATTACCGATAGGATGTCCGTCTCACCTACTTAGAGAAAATGAAGCGTTAACTGTGTCTTAACTTTAAGCTAATATATGCTTGTAAACTAATATCTGTTGTCATTTGAATTTATAAAGAAGGATAATAGATAAATGAAGAAATGTGGTATTATTACTTGGTTTTGATGGACATCAGAGAGAAGTTGAAAAATACGTTGAGAAGTTGGATAGATAAGGAAAAGTGTTTTTCATTTTTGAGGTCTCTGAATCAAGATTTAGATTCTGTTATTCGAGTCAGAGTCTTCATTGTCTTGTATTTTGATGGAATCTTGTTCACTAATCCAATTAAGATGTGCTTTTTGTCTATATTGGTGCTACCTGGCCCTCTCTCCCCCATGAAATATAATGCAATTAGAAGAGAAGTCTTGGACAAAGGATATAGTTGGTTGTTCCTTTTTGCTTAATTGCTCGCTCATATCTTCCTCTTTTTGTCCCAAGTTTCTTAGAGACTGTAAAACCCTATCTAGATATCAAGTTTATCTTGTATACATGCAGGATTGTATTCTTAGCTAAAGTTAAAACAGTAACTTATAGCTGAGCAGCTGATGAAATGATGTACATGCATTTTTTTATTTAATCATAACGCATGGTTATTGTTGTCATGTTATTTGATAAAAAGTTTCCTTCCCACCTGGTGCTCTCAGGTTGTGACATGTGTCCGCCAACCATCACAAGGACCAA</genome_strand>
        <mrna_strand>TTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTCCTTCATTTTGAACCTAAAAATCCAATCTTGGAAACACCCATTGAAGGAAAAATCAAAATTTTGAAGTTTTTAAATAAGGGGTGTATAAAAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAAATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAAATTGCTCAAAAACTCAATCTTACCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATAAGGTTGAAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCACCCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306465" ref_strand="+" ref_description="SGN-E306465 [cLEX-13-K3]">
      <seq>ttaagattaatctaagccaaagcgtcaacatctcttcagcaaagccaacaacttttttttttttagctttttctcacataccccattgccaataattgactttggactctttttttcttcattttgaacctaaaaatccaatcttggagacacccattgaaggaaaaatcaagattttgaagtttttagataaggggtgtataagaaatcatgggaaagacaacaaggaaacttgaagttgtttctcctgttccagcagatatagatattgctaactctgttgaacctcttcatatttctgagattgctcaagaactcaatcttagctctcagcattatgatttgtatgggaagtataaagccaaggtgctcttatccgtgcttgatgaggttggaggaagtgaggatgggtattatgtggtggttggaggaataactccaacccctcttggagaggggaagtctactaccacagttggtctttgccaggctttgggagctttccttgataaaaaggttgtgacatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="15947" stop="13533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15647" g_stop="15284" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13984" g_stop="13835" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="516" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E306465" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15647" e_stop="15284"/>
          <exon e_start="13984" e_stop="13835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAAC--TTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAGGTAATGCTTTTTTAAATGTAGATTCATGTGTTAAAGATATATTCGAGTTATGGTTGCTTAACTAATAGTTATTATCTCGGAAAGTTAGTATTTTTGTTAGAGAAAATTGGGATTAGAAAAAAAAGGTGACCTTTTGAGAGTCTTTGTTGGATTTTTGCTTGTATTCACTCAGTTGTATTATTTTGGTTTACTTTAGTAATATATGTTGATTGGCAGTGGTAGAGTCAGAACTAAACATGAATAAGCTAATAAGATTCAACATAGATGTAGTATATATACATATTTTTGACATCTTCATATTTCTGATTGTTCAAGAGCTCAATCTTAGCTCTCACCAATCACCATTATGATTTGTATGAGAAGTATAAAGCCTAGGTAGTACATGTTACCATTGAATGTAGATGCATGTGTTAAAGATATGTTTGAGTTTGTTTTTCAGATGGTCGCTTAACTAATTAGTTATTATCTCATAAAGTTACTTTCTTTGTTGAAGAAAACTGGAATTAAGAAAAAATGTGTTTGAATTTGTACTGTGCTGTATTATTTTGGTTTTACTTTGGTAATCTATGTTGACTGGTGCTTAGAAGAATAGATGTTTATTGGTAGTGTTAGCATTAGGATTTCGTTAAGAAGATTCAAAATATAAAGAACTAAACATGAAGAAGCCAACAAGATTCAACATGTATAGACATAAATTCTTTTTGACTTCTTGACTCTGTAATTTTTCCGATGGAGGGATGTCAATCAACTCCCTGCGAATAAGGGTAGCTCTGCCCCAGTGTATTGTTATGCTATACTCTTCTGCTCTTAAGTGCTGATAATTTTTTAGATTTTGCTTGGTTTGCATAGAAGAGTAATGTAATTGAGATGCATAGATGTGGTTCCTTGTATGTTCTCAATAACAAAAGAAGTTTATTTCTTCTCCATCAGTATGTAGTCAATTACATGGTAACTATTGGTCTTATCCAATGTAAATATGGATTGCTTAGGAGTATTCATATGTTTTTTCTTGATTACCGTGGTGTACGGGCCATCTTTGGGATCCTCGACTAATTCCAAGGCTAGGACCCTAGGACAGATGGGAAGGATCATTCATATGTTGTAGTACTGCTTTTTGTTGATGAGTGATTATTACTTCTCAGGTACTTTGATTTTGCAGTTTTTCAAAATTGAGTTTCTTTGACTATAATGAAGTGTTATACTCATGAATGTGATGTGAAATCCGCTTTGTGTATATTACTATATTGACTTTTCTTTTATAGTTGGTGATCTGATATGTCGAATTTTTTGTGATTCTAGGTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG</genome_strand>
        <mrna_strand>TTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAACTTTTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224824" ref_strand="+" ref_description="SGN-E224824 [cLEL-27-H21](-)">
      <seq>gctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcaaaagttgtgtaaataactacgtaggtggtctacttgattgcgtccgtggccttaatgtgtcatgacttgtttggtgcagacgatttcgggtaaaactactgctgtaagatagacatacttgtgtaggattcatcttttttttctctacactttgatgttgtctatagattatccaattgattctttctttctttcttagtattcaaatgcagaagattgaatagtcgttcccctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="31589" stop="30595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31289" g_stop="30896" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="414"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E224824" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31289" e_stop="30896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTTGTTTGGTGCAGACGATTTCGGGTAAAACTACTGCTGTAAGATAGACATACTTGTGTAGGATTCATC-TTTTTTTCTCTACACTTTGATGTTGTCTATAGATTATCCAATTGATTCTTTCTTTCTTTCTTAGTATTCAAATGCAGAAGATTGAATAGTCGTTCCCCTA</genome_strand>
        <mrna_strand>GCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTTGTTTGGTGCAGACGATTTCGGGTAAAACTACTGCTGTAAGATAGACATACTTGTGTAGGATTCATCTTTTTTTTCTCTACACTTTGATGTTGTCTATAGATTATCCAATTGATTCTTTCTTTCTTTCTTAGTATTCAAATGCAGAAGATTGAATAGTCGTTCCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224468" ref_strand="+" ref_description="SGN-E224468 [cLEL-27-H21](-)">
      <seq>tgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcaaaagttgtgtaaataactacgtaggtggtctacttgattgcgtccgtggccttaatgtgtcatgacttgtttggtgcagacgatttcgggtaaaactactgctgtaagatagacatacttgtgtaggattcatctttttttctctacactttgatgttgtctatagattatccaattgattctttctttctttcttagtattcaaatgcagaagattgaatagtcgttcccctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="31513" stop="30597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31213" g_stop="30896" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="337"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E224468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31213" e_stop="30896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTTGTTTGGTGCAGACGATTTCGGGTAAAACTACTGCTGTAAGATAGACATACTTGTGTAGGATTCATCTTTTTTTCTCTACACTTTGATGTTGTCTATAGATTATCCAATTGATTCTTTCTTTCTTTCTTAGTATTCAAATGCAGAAGATTGAATAGTCGTTCCCCTA</genome_strand>
        <mrna_strand>TGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTTGTTTGGTGCAGACGATTTCGGGTAAAACTACTGCTGTAAGATAGACATACTTGTGTAGGATTCATCTTTTTTTCTCTACACTTTGATGTTGTCTATAGATTATCCAATTGATTCTTTCTTTCTTTCTTAGTATTCAAATGCAGAAGATTGAATAGTCGTTCCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688759" ref_strand="+" ref_description="SGN-E688759 [t3_tus_54_L11]">
      <seq>tttcctcaaagccttgggatcctaggtggcagacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcanaagttgtgtaaataactacgtaggtggtctacttgattgcgtccgtggccttaatgtgtcatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33629" stop="30762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33329" g_stop="33222" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="164" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="235" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31062" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="550" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E688759" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33329" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTT</genome_strand>
        <mrna_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCANAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550991" ref_strand="+" ref_description="SGN-E550991 [TUS-54-L11]">
      <seq>tttcctcaaagccttgggatcctaggtggcagacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcanaagttgtgtaaataactacgtangtggtctacttgattgcgtccgtggccttaatgtgtcatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33629" stop="30763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33329" g_stop="33222" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="164" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="235" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31063" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="549" r_length="314" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E550991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33329" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACT</genome_strand>
        <mrna_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCANAAGTTGTGTAAATAACTACGTANGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259253" ref_strand="+" ref_description="SGN-E259253 [cLEG-43-P23]">
      <seq>ttcctcaaagccttgggatcctaggtggcagacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcaaaagttgtgtaaataactacgtaggtggtctacttgattgcgtccgtggccttaatgtgtcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33628" stop="30764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33328" g_stop="33222" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="163" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="234" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31064" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="547" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E259253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33328" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGAC</genome_strand>
        <mrna_strand>TTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550883" ref_strand="+" ref_description="SGN-E550883 [TUS-54-D11]">
      <seq>ttgggatcctaggtggcaaacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcanaagttgtgtaaataactacgtaggtggtctacttgattgcgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33616" stop="30785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33316" g_stop="33222" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="151" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="222" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31085" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="514" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E550883" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33316" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCC</genome_strand>
        <mrna_strand>TTGGGATCCTAGGTGGCAAACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCANAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688622" ref_strand="+" ref_description="SGN-E688622 [t3_tus_54_D11]">
      <seq>ttgggatcctaggtggcaaacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcanaagttgtgtaaataactacgtaggtggtctacttgattgcgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33616" stop="30785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33316" g_stop="33222" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="151" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="222" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31085" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="514" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E688622" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33316" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCC</genome_strand>
        <mrna_strand>TTGGGATCCTAGGTGGCAAACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCANAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550869" ref_strand="+" ref_description="SGN-E550869 [TUS-54-C11]">
      <seq>tttcctcaaagccttgggatcctaggtggcagacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcaaaagttgtgtaaataactacgtaggtggtctacttgattgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33629" stop="30787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33329" g_stop="33222" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="164" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="235" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31087" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="525" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E550869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33329" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGT</genome_strand>
        <mrna_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688604" ref_strand="+" ref_description="SGN-E688604 [t3_tus_54_C11]">
      <seq>tttcctcaaagccttgggatcctaggtggcagacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcattttccactggattcaattgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaatgacaggttgactagtgatactggagtcccggaactggactccttcgatgctgtagcccccggtgaatcagatggtagtagtagacctgaagatgagtggcaactcctttgatctgacgacacaattcaggctcaaaagttgtgtaaataactacgtaggtggtctacttgattgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33629" stop="30787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33329" g_stop="33222" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="164" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="235" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31087" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="525" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E688604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33329" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGT</genome_strand>
        <mrna_strand>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256971" ref_strand="+" ref_description="SGN-E256971 [cLEG-44-P13]">
      <seq>ttcctcaaagccttgggatcctaggtggcagacctggagcatcaacctatattgttggcgtgcaagatgataaagccgtttatcttgacccacatgaagttcagccagttgttgatattaaaatggataagctagatgttgatacttcatcttatcactgcaatactgtaaggcatgttccactggattcaatcgatccctccttggctatcggattttactgtagagataaaagtgattttgatgatttctgtatacgagcatctgagctagtagatcagtcaaacggtgctccattgtttaccataactgagactcgtagctctgccacatcagttgagtacaaagacaggttgactagtgatactggagtgccggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="33628" stop="30929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33328" g_stop="33222" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31672" g_stop="31617" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="163" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31528" g_stop="31458" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="234" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81">
            <donor d_prob="0.592" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31376" g_stop="31229" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="382" r_length="148" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E256971" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33328" e_stop="33222"/>
          <exon e_start="31672" e_stop="31617"/>
          <exon e_start="31528" e_stop="31458"/>
          <exon e_start="31376" e_stop="31229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCAGTAATTATCTTTCTTTTTGGTTGCATATCTGAGTTATTTTACACATTTCGATGGGATTTCAGTTATTTTCTCATTGCATAAATCTAGGATAAATCGGCAAGCCTTAAAATCAAAGTTTTTATGTTTGGGTGCTATTGCTTGCTTATGAAGGAGAGGTGGGGTGATATGGGCTCCTAGATAACACTTTGATCTGATAAAGCTGATCTTTAATTTTGATTGAATGAAATGTGTATATACAGAGAAACAAAACCTGAAGCCTGAAATGACCATGAAGTGGGGACGAGAAATTACGGTAGTGGTAAGAGCACTCCAGTTCCAAACAAGTGGGTTGGGCGTTCGAGTCACCAAGGGGGGAAGTGAAAAACCATAATTATTTGCCCCTTGTTAAAGGATTTTGGCGTAGGCTTTACCTAATCAAGAAAAGACTTGGAAATGGGAACTGACTGGATTCTGTATATTTGAGCACAGCGTTAAGGACTTCACCAAGAACTACTGACAAAGGAAAACTTTTTAAATTTTATTTTTAGATCTCTTATTGTTTGCTGAAATAATATCCTTCTCTTAAAGCATTTTCTCTATTCCCTCTTAGAAAATAAGCTTATATGAGAATCTCTAAGTAGAATATATTCTGACAGATCTTCACTGCTTTAGAGGACCTTCATAGAATCTAGCAAGGCTACCCAGCTAAAATACTTGCCATATTGCTGTAGCAGGAGAGGAGCTATATAAAAAACAATCACCAAACTACTTTTTCGGTTCTCCTCTTACCAGTGCCTTAAAATTGTGGGCTTTTCCAGTGTTCCGTTTTCTCTAGCCGACATCTCTACGGTAACCACAATCGACATTTAATTAGTATCATCTGACAAGTCTAGTTCAGTGGTCTTGTGCTTTGCGTCCTGTTTAGTCAGTGACACAGCTTTGCTAGTCTCTCCTTCTCCCGGAAATCCTTCTATGTAACTTCACAATTTTCAGTTGCGAAATTCAATATTGTTCAGTGAGTTTCTAATCTTCCTACGTATTCCTTTCAGGATCTTGATCCATCAGTTTCTTCCTGTAGTTTCCTGACACTACCAAAAAGGAAAATAAAAATAAAAATAAAGATATATTGCTCCCTTTATGATCTTTCCCCATAACTTTTCCTTTGAGTCGAGTGGACATGTAGGGATCACTCTCTTAACAAATGAGTATTTTCTTAATTGGTTTTTCAGCTTTCTTACTATTTCGTCTTGTTAACTTTCTTTATGGTGCTTGTGATCTCATTTGTTGTGATTTTAACATGTGAAGTGTTACGGGCTTATCTATTGAAATGGATAGTCTACTGCTTTCATTATCTGTCTAATGAGCCAGTTCTTGATATTATAACTGATATATGTTCTCATATACTGCTTATCAATGAAGTTCCAAAGTTTGAGGTTTTCAATTTTCAAATACAAAAGCTACTTTTTCAAATACTCGCAATTTTCATGGACAAACGCCACCATAATATTTGTGTCATCTGCTTTCATGGATTGTAGGGTGTATTGTTCCTCATTATCTGTCTGGTGTGCAGGTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAAGTAAGTGAATTCTCGTTCTAGTTTCTCATCTGATTTTTCCAATTTTTTTTCTTTTTATCACATCATGGCCTTTTGATTTTGATTGCAGTACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAAGTATGTTTCCAGAAACTGCTGCGCTTGTCTTACCATGGCTAAGTCGATTCTTAACCACTAACTTCTGTATGCTCTCTGTAGGTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACT</genome_strand>
        <mrna_strand>TTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA........................................................................................TACTGTAAGGCATGTTCCACTGGATTCAATCGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA.................................................................................GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAAAGACAGGTTGACTAGTGATACTGGAGTGCCGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273883" ref_strand="+" ref_description="SGN-E273883 [cLEN-7-K6]">
      <seq>attcagatgcttgttgctcaggctctacttcttcatcgattaggaagatcgtggagaaaatctatggacaagccgcttgaacaaaagtatgtggagattttgcacctctttggtgattctgtggagtcagcttactctatccataacctcctgcaagccggcaagacttatggtctttctcctggttcttgggtgggtccgtatgcaatgtgccgcacctgggaaacattagcacgctgcaaaagagaagaaacaggaaatgcagtcatgtcttcagctatggctatctatgttgtatctggggatgaagatggagaaagaggtggagcgccagttctctgcgttgaggacattgtcaagcattgttccggcttggcaaaaagcgaaattgactggacacctgttcttttcttactaccgttggttcttggacttgacaaaatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="36265" stop="34750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35965" g_stop="35945" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35944" i_stop="35665" i_length="280">
            <donor d_prob="0.725" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35664" g_stop="35614" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="72" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35613" i_stop="35425" i_length="189">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35424" g_stop="35050" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="447" r_length="375" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E273883" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35965" e_stop="35945"/>
          <exon e_start="35664" e_stop="35614"/>
          <exon e_start="35424" e_stop="35050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGATGCTTGTTGCTCAGGTTTTTCCACTGTAGCACAACTCCTTTTCTTTCTTGTTGCTCCTGCCATCCCAATTTACGTGGCACCATTTGGCTAAGCACGGATTTTTTAAAAAGAAAAGACGGGTGACATTCTTTTTGGGACAAACTTAAAAGGGAGTGTGCCACATAAATTGGGTTAGAGCGAGTACAAGTACATGTTAGCTAAAATCTGTAAATTCTTGCTTATTTGCCATTTTGTGAATTTCCAATGCTTGCTGTGTCTGGTATAGTGATATTGATGATTCCTGCATGTATATAGGCTCTACTTCTTCATCGATTAGGAAGATCGTGGAGAAAATCTATGGACAAGGTACTTGAAAGTCAAAACACTGCAGTATTTTCAGTTGTTAAAATGCTCAATTTCCAATTTAGAACCACGATAATGCACAATCAGGTTCTCATCTCATATCTCTTATCCAAAAAATGAAAAAAGATCAGGTTCTCATCTTATGTATGTAGTGTTTTAGCATGAAAATTTAGCATGTTATCTCATTGGCAGCCGCTTGAACAAAAGTATGTGGAGATTTTGCACCTCTTTGGTGATTCTGTGGAGTCAGCTTACTCTATCCATAACCTCCTGCAAGCCGGCAAGACTTATGGTCTTTCTCCTGGTTCTTGGGTGGGTCCGTATGCAATGTGCCGCACCTGGGAAACATTAGCACGCTGCAAAAGAGAAGAAACAGGAAATGCAGTCATGTCTCCAGCTATGGCTATCTATGTTGTATCTGGGGATGAAGATGGAGAAAGAGGTGGAGCGCCAGTTCTCTGCGTTGAGGACATTGTCAAGCATTGTTCCGGCTTGGCAAAAGGCGAAGTTGACTGGACACCTGTTCTTTTCTTAGTACCGTTGGTTCTTGGACTTGACAAAATCAAT</genome_strand>
        <mrna_strand>ATTCAGATGCTTGTTGCTCAG........................................................................................................................................................................................................................................................................................GCTCTACTTCTTCATCGATTAGGAAGATCGTGGAGAAAATCTATGGACAAG.............................................................................................................................................................................................CCGCTTGAACAAAAGTATGTGGAGATTTTGCACCTCTTTGGTGATTCTGTGGAGTCAGCTTACTCTATCCATAACCTCCTGCAAGCCGGCAAGACTTATGGTCTTTCTCCTGGTTCTTGGGTGGGTCCGTATGCAATGTGCCGCACCTGGGAAACATTAGCACGCTGCAAAAGAGAAGAAACAGGAAATGCAGTCATGTCTTCAGCTATGGCTATCTATGTTGTATCTGGGGATGAAGATGGAGAAAGAGGTGGAGCGCCAGTTCTCTGCGTTGAGGACATTGTCAAGCATTGTTCCGGCTTGGCAAAAAGCGAAATTGACTGGACACCTGTTCTTTTCTTACTACCGTTGGTTCTTGGACTTGACAAAATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301287" ref_strand="+" ref_description="SGN-E301287 [cLEW-24-D8]">
      <seq>ttctccaatgttttgacctcaatacacgccaaaattcccttcaattttccaatcattagtacccaaaatcccatcaattctcaatctttgcttcaattatcacaaccccagatcaaaatcttgacaaaattagcaaaaatttgctagttctatgttgttctaccatgtaaaaaatcccaaaactccataaattcacaatctttactgccattctcataaccccagatcaaaatcttgataaaattagccagttctataaagttgttcaagatgatgattcatccatagaaccaactcaaagtgaaagttttgctgcttttgttgatgatttctcatctagaattcttgttacatatcgtaaaggttttgctcctattgaagatactaagtataccagtgatgttaattggggttgcatgcttaagagtagtcagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="37309" stop="35656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37009" g_stop="36755" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36754" i_stop="36249" i_length="506">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36248" g_stop="36141" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="363" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36140" i_stop="36031" i_length="110">
            <donor d_prob="0.601" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36030" g_stop="35956" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E301287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37009" e_stop="36755"/>
          <exon e_start="36248" e_stop="36141"/>
          <exon e_start="36030" e_stop="35956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTCAGATTCCCCAAGAAAAAATCTTGGTTCTTCTGTTTCTACAGAGCCAGGACCAGGACCAAGCAGTAGTAGTAGTAGCTGTAAGGTTAATAATAAATCATCTGTTTGGTCTGGTTTATTGGTTTCTCCTTTTTCAATATTTGATAGTGAGCCAAAAGGGTGTTTGAAAAAAAGGGAATTTTGTTGTTCAAAGAAGTATAATGGTATTGGTTGGACTAGTGCTGTGAAAAGAATGATAAACAGTGGCTCAATGAGGAGGATTTTTGGGATGGACAAAACTGGGATGCCTAATGGGTCAAAGAGTGATATTTGGCTTTTGGGTGTTTGCTATAAAGTTGTTCAAGATGATGATTCATCCATAGAACCAACTCAAAGTGAAGGTTTTGCTGCTTTTGTTGATGATTTCTCATCTAGAATTCTTGTTACATATCGTAAAGGTGCTTAATGTTGTAGTCTTTCTTTTGCTCTGATAGTTTGATGTGATTATAGTTTGATTTGGTGTGTGGAAGATGTGAATTTGGTTTTATTTGATTGAATGTAATTACAGGTTTTGCTCCTATTGAAGATACTAAGTATACCAGTGATGTTAATTGGGGTTGCATGCTTAGGAGTAGTCAGATGC</genome_strand>
        <mrna_strand>TTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGTTGTTCAAGATGATGATTCATCCATAGAACCAACTCAAAGTGAAAGTTTTGCTGCTTTTGTTGATGATTTCTCATCTAGAATTCTTGTTACATATCGTAAAG..............................................................................................................GTTTTGCTCCTATTGAAGATACTAAGTATACCAGTGATGTTAATTGGGGTTGCATGCTTAAGAGTAGTCAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740130" ref_strand="+" ref_description="SGN-E740130 [LC20AH07]">
      <seq>aaacgccactttctccaatgttttgacctcaatacacgccaaaattcccttcaattttccaatcattagtacccaaaatcccatcaattctcaatctttgcttcaattatcacaaccccagatcaaaatcttgacaaaattagcaaaaatttgctagttctatgttgttctaccatgtaaaaaatcccaaaactccataaattcacaatctttactgccattctcataaccccagatcaaaatcttgataaaattagccagttctatatagttgtctgatgtaaaaatccataaatcccaatcttttctccaaatctcacaaccccagatagtattttgacagaaagttgcctgttttagagttctttgtgtaccatgtgtcatgatttgaactataatctttgatgcctaagaaaacccagtttagtataagctcatctgattcagattccccaagaaaaaatcttggttcttctgtttctacagagccaggaccaggaccaagcagtagtagtagtagctgtaaggttaataataaatcatctgtttggtctggtttattggtttctcctttttcaatatttgatagtgagccaaaagggtgtttgaaaaaaagggaattttgttgttcaaagaagtataatggtattggttggactagtgctgtgaaaagaatgataaacagtggctcaatgaggaggatttttgggatggacaaaactgggatgcctaatgggtcaaagagtgatatttggcttttgggtgtttgctataaagttgttcaagatgatgattcatccatagaaccaactcaaagtgaaggttttgctgcttttgttgatgatttctcatctagaattcttgttacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="37319" stop="35848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37019" g_stop="36148" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="872" r_length="872" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E740130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37019" e_stop="36148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTCAGATTCCCCAAGAAAAAATCTTGGTTCTTCTGTTTCTACAGAGCCAGGACCAGGACCAAGCAGTAGTAGTAGTAGCTGTAAGGTTAATAATAAATCATCTGTTTGGTCTGGTTTATTGGTTTCTCCTTTTTCAATATTTGATAGTGAGCCAAAAGGGTGTTTGAAAAAAAGGGAATTTTGTTGTTCAAAGAAGTATAATGGTATTGGTTGGACTAGTGCTGTGAAAAGAATGATAAACAGTGGCTCAATGAGGAGGATTTTTGGGATGGACAAAACTGGGATGCCTAATGGGTCAAAGAGTGATATTTGGCTTTTGGGTGTTTGCTATAAAGTTGTTCAAGATGATGATTCATCCATAGAACCAACTCAAAGTGAAGGTTTTGCTGCTTTTGTTGATGATTTCTCATCTAGAATTCTTGTTACATAT</genome_strand>
        <mrna_strand>AAACGCCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTCAGATTCCCCAAGAAAAAATCTTGGTTCTTCTGTTTCTACAGAGCCAGGACCAGGACCAAGCAGTAGTAGTAGTAGCTGTAAGGTTAATAATAAATCATCTGTTTGGTCTGGTTTATTGGTTTCTCCTTTTTCAATATTTGATAGTGAGCCAAAAGGGTGTTTGAAAAAAAGGGAATTTTGTTGTTCAAAGAAGTATAATGGTATTGGTTGGACTAGTGCTGTGAAAAGAATGATAAACAGTGGCTCAATGAGGAGGATTTTTGGGATGGACAAAACTGGGATGCCTAATGGGTCAAAGAGTGATATTTGGCTTTTGGGTGTTTGCTATAAAGTTGTTCAAGATGATGATTCATCCATAGAACCAACTCAAAGTGAAGGTTTTGCTGCTTTTGTTGATGATTTCTCATCTAGAATTCTTGTTACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339171" ref_strand="+" ref_description="SGN-E339171 [cTOF-6-N13]">
      <seq>gtaaacgccactttctccaatgttttgacctcaatacacgccaaaattcccttcaattttccaatcattagtacccaaaatcccatcaattctcaatctttgcttcaattatcacaaccccagatcaaaatcttgacaaaattagcaaaaatttgctagttctatgttgttctaccatgtaaaaaatcccaaaactccataaattcacaatctttactgccattctcataaccccagatcaaaatcttgataaaattagccagttctatatagttgtctgatgtaaaaatccataaatcccaatcttttctccaaatctcacaaccccagatagtattttgacagaaagttgcctgttttagagttctttgtgtaccatgtgtcatgatttgaactataatctttgatgcctaagaaaacccagtttagtataagctcatctgattcagattccccaagaaaaaatcttggttcttctgtttctacagagccaggaccaggaccaagcagtagtagtagcagctgtaaggttaataataaatcatctgtttggtctggtttattggtttctcctttttcaatatttgatagtgagccaaaagggtgtttgaaaaaagggaatttttgttgttcaaagaagtataatggntattggttggacctagtgctgtgaaaagaatgataaacagtggctcatgagggaggattttttgggatggacaaaactgggatgcctaatgggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="37321" stop="35979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37021" g_stop="36279" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E339171" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37021" e_stop="36279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGCCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTCAGATTCCCCAAGAAAAAATCTTGGTTCTTCTGTTTCTACAGAGCCAGGACCAGGACCAAGCAGTAGTAGTAGTAGCTGTAAGGTTAATAATAAATCATCTGTTTGGTCTGGTTTATTGGTTTCTCCTTTTTCAATATTTGATAGTGAGCCAAAAGGGTGTTTGAAAAAAAGGGAATTTTGTTGTTCAAAGAAGTATAATGG-TATTGGTTGGA-CTAGTGCTGTGAAAAGAATGATAAACAGTGGCTCAATGAGGAGGA-TTTTTGGGATGGACAAAACTGGGATGCCTAATGGGTCAA</genome_strand>
        <mrna_strand>GTAAACGCCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTCAGATTCCCCAAGAAAAAATCTTGGTTCTTCTGTTTCTACAGAGCCAGGACCAGGACCAAGCAGTAGTAGTAGCAGCTGTAAGGTTAATAATAAATCATCTGTTTGGTCTGGTTTATTGGTTTCTCCTTTTTCAATATTTGATAGTGAGCCAAAAGGGTGTTTGAAAAAAGGGAATTTTTGTTGTTCAAAGAAGTATAATGGNTATTGGTTGGACCTAGTGCTGTGAAAAGAATGATAAACAGTGGCTCATGAGGGAGGATTTTTTGGGATGGACAAAACTGGGATGCCTAATGGGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336003" ref_strand="+" ref_description="SGN-E336003 [cTOE-6-P5]">
      <seq>ccactttctccaatgttttgacctcaatacacgccaaaattcccttcaattttccaatcattagtacccaaaatcccatcaattctcaatctttgcttcaattatcacaaccccagatcaaaatcttgacaaaattagcaaaaatttgctagttctatgttgttctaccatgtaaaaaatcccaaaactccataaattcacaatctttactgccattctcataaccccagatcaaaatcttgataaaattagccagttctatatagttgtctgatgtaaaaatccataaatcccaatcttttctccaaatctcacaaccccagatagtattttgacagaaagttgcctgttttagagttctttgtgtaccatgtgtcatgatttgaactataatctttgatgcctaagaaaacccagtttagtataagctcatctgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="37314" stop="36275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37014" g_stop="36575" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E336003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37014" e_stop="36575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTC</genome_strand>
        <mrna_strand>CCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367442" ref_strand="+" ref_description="SGN-E367442 [cLPT-7-H18]">
      <seq>gctcggagcctttttttctccggcaattgccggcgacgacgaccatttcccgccggctacagtaaatgagtgttgctacttgattgagcccatgcctgctacacctatgaagaagagtgctacccgtggtgggattgggaatgtattcaacaaattaacaagcaaaattggagatcccgttgactttgaacttccagattggttgagtaaatggcaacccactccctatccctatacctctataagacgaaatatatacctcaccaataagggtaagcggcggctagaagatgatggcatatcttgtacctgcagttcaacagcagaatcttcagacgtgtgtggcatggattgcctttgtagcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="39396" stop="44103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39696" g_stop="39751" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39752" i_stop="41152" i_length="1401">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41153" g_stop="41212" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="115" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41213" i_stop="42651" i_length="1439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42652" g_stop="42787" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="251" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42788" i_stop="42994" i_length="207">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42995" g_stop="43106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="363" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43107" i_stop="43709" i_length="603">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43710" g_stop="43803" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="457" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E367442" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39696" e_stop="39751"/>
          <exon e_start="41153" e_stop="41212"/>
          <exon e_start="42652" e_stop="42787"/>
          <exon e_start="42995" e_stop="43106"/>
          <exon e_start="43710" e_stop="43803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGGAGCCTTTTTTTTCTCCGGCAATTGCCGGCGACGACGACCATTTCCCGCCGATAAAGGTTTGTTCTTCACTTCTATGCTTTATCTGTTCTGGGTGTTCTCCCTTTTTGCTTCTTTCGATTTCTCCTGTGAGTTGTTCTCTCTTGTAACATTTAGTTTTGTGAGTAAAAACCATTGAGGGTAAAATGTAGTTTTTTTTTCAGTTTTCTGAAGTTGGTTGGGAATTCGCCAAGTTTTGTGGTGTTTTATCGATTTTTCTGAGTGTGGGAAGCCAATTTTGTTGAGTGATCCGAGTTTGTTGTTTAGGATTTTTCTATTTTGCTTTGTTTAATTGGATTTAGAATTGGGAATGTGTTTCATTTGCAGTTCTTTGAGATGGGTTTTTAGTTGTTTCTGTGAATTTTGATTATTTTGTCTTGTTTACATTTAATTCTGGTGTGTTGAACTCACATTTACTAGATTTGGTTTGAATTGCTACTCTTATCAGTTACAATCTAATTGTTAGTTCCTGATAGTCCAAATAGCATTGGGGAGGTACTGGTAAGGTGTGCTTACACTCTGCCGTCCTCACAGTCCACTTGTGTGATTTCACGGTGTATGTTGTTGTTGTTGAGAGTCTGAAAAGTGTTTATGGATAAATTTTCCACAAAAGCAACTGATTTTAGTTTATGTATCTAATAGAGTTAAAATGTGGTATTTTTTTTCCAGTTTTCGTAAGTGGATTTGGAAATTCACCAAGTTTTATGCTGTTCAATTGATTTTAGGTTTTAGGAATCCTATTCCTAATGATCTAGAAGTGAAACAAGTGTTCTTGGCTCTTTGCTTGAGAGTAGGACTTGTGTGTTAAAAGCTAATTTATTGAGTTGTACTAATATTGTTGAGTGATCTGAGTCCGTTGTTAAGATTTTGAAAATTTTGTGTTCTGTTTTGTTTTAATTGGATTTAGAATTGGGAATGTGTTTCATTTGCAGCTCTTCCCCATTTTTTTCCTTCTAAAGTTTGATGCTTTTATCTTGTTTCCATTTTGTTCTGATGCGTTGAACTCACATTTTTTATATTTGGTACAAATTACAACCCCTTATATGTCGAAGTTACTACTTGGAGAGTCGAAGATTTTTTTTTAGTGTGGTTCTTTTCAAGTACTTCCTAAATATTTTGAATAGTTTACTATTGTGACTGATGTTAGTTTCAAATTCATTTTAATTTTTTTGAAGATTCTATGTCCATATTCGGGACGAACATTAGATAGATTCACCCTTGCACTTTGAATCAAGTCCATAAATTGAAACAAGTTTGTCAAGGAACATGCTTAACATCAATCTCTAATACTATATGCTTTGGTTTGTAAGCTTGGATTTTAGTCTTATTTTCTATAGGAGATTTGTTATGTTCGTTCTACATTTTGTATTGGCTTCTTTGCTTCCTAACTGATTCATTTATTTTTTCCCTTCTAGGCTACAGTGAATGAGTGTTGCTACTTGATTGAGCCCATGCCTGCTACACCTATGAAGAAGGTTTAGAATCGATTTTCTTCCATGTTATATTCTTTATTCAGCATAATATTCATATCCAGTTTTATTGCAAAGGATGTTATATTGTTTGGTGTACCATTGTCGATTATGGTGCCACATACTTGAATCTAGACAATATTTTGCTTTCTCGTGATAAAGGCCTGTGCTCCTTTTCAGTTCTATTAGTAAGTTTGTGGTTTTGGCATTTCTTTTTTTCCATCTCTCTTTTCTTTGTTATTATTTCTTGTTAGAGATATCTCACTCATGTAGTGAATCTTACTTTAATTTGAATAATATGCAGCAATTGATAACAGTGTGCTTTTACTTATTGATGCCCTGCTAGCTAAAGTAGTGGATTCTTTCGGTCCTTGTATTTCACACATATTCATTGCACATATCTTTGTTTAGTCTGAAAAATGATAAATTAGTGAAGGAAGGTACAAAAACATGAAGTGATTGGTAAAAGGGGTAAAATGTCACTTTAAATGTGTCGGTAGGTTGTTATGACCTTGAATATTTCACATATTTATTCATGGCCTTCTATTTCCGTCCTATTTATTCGAAAGATGTCAAAATTTTAAATAAGGCACTAATAGCTTCATTAATTAATTAAAAGGGGGGGGGGGAGGTATCACCTAAGGCTAAAGAAAACGCTCCTCTAAGAAATCTAAAGCAAAGAAAATAGGATATCCCAGTAATATTTTACTACATTAAAAACAGTACTGCTCTAGTTTTAAATGATATGTCAATCATTTAAAACTTATTCTTTGGTTAAGGATCCTTTTTGAAGTAATGTATGAGTATGCTCGCACCTAAACGCGTAACCCCGTGGTCAATGAAGTGGGTTGAGAACCAGGAGGTTCAAGTTCGAATTTCAATGGAGGCAAAAACACTAGGTAATCTCTTCCCATATGTCCAAGCCTTGGTGGTAGTTACCTGTGCTGGTGGGAATTAGCATGTACCCAATGGAATTTGTTGAGGTGCACTCAAGATGGCCTGCAACACAGTATATAAAATTTTTTTTACCACTGACCAAACACAGACTCTTTCTTGTTGCTATCTATTATATGCGGCTGCACACCTCATTTGCTGTTGTAGACAAATTGTCCCTAATCTACTTTTCTGATTTTTTCTGGCTTAGCTATTCTTTTATTGGTATATCCTGATTAGAAGGATCCATTATATATTTTCTGTTTTCTTATTTGTTTTTGCAGAGCTATTCCTTTATTTTAAAATTTGGTATTTTATAGTTTTAGCAAGGGTAAAGCCTGAGTAGTGTAATGGTGGAAACATGTCTGCTAAAAATCCTATGAGAATGCTGATATCTTGTTCTTATATGATTGTTAATGAGCTTCTTCTTATGGAGTATGGTGCGTGCATGTGTTTATGTTTGTGATCTCAACATCCTCTTAATATGCATTTTGTTTTCTTTTCCTGTACAGAGTGCTACCCGTGGTGGGATTGGGAATGTATTCAACAAATTAACAAGCAAAATTGGAGATCCCGTTGACTTTGAACTTCCAGATTGGTTGAGTAAATGGCAACCCACTCCCTATCCCTATACCTCTATAAGGCGAAGTATCCTTCAATAGAAATAGTTATCATGGAATTATAGATGCGTGATATTGATAGTTTGTTTCCTTATTAAATATCTCTTAGTCCTATACATTGTTTGATAAATAATTGATTATGGTGTTCTGTTTGATATGCACCTATTTCTTATCTTTCTGTAGCTTCTTTTGGCCTTTCTCTTTTTCTATTTGTGTCGATATTAACTACTTGAAGATATATACCTCACCAATAAGGGTAAGCGGCGGCTAGAAGATGATGGCATATCTTGTACCTGCAGTTCAACGGCAGAATCTTCGGACGTGTGTGGCATGGATTGCCTTTGTAGGTAAGGAGGACTTAGATTAAAATTCATTACTGTCAGAACTTTGATAGAAACTTATAATATATTTTTTGGAAATTATATCTGTATGACCTGCTGCATAAATTTGTTGATTGGGAGTTTCATGGAGAAGAAGAAACGACAACCATAGCACCTCCATCTCCAACGGAGAAGAATTCTTCATATTTGTGGAGGAACTCATTAACTGTGCCGGCGATGACGAGAAAGTAATTGACGGAGAAGAAGAAGACAAAGAAGATGAATTCACCATTAACATTTCCCTGCAGCTTTTTCCTTTTCTTCTTAGTTTACTTAACTTTTTTTTTATACATACAAATCACTCTTTAAAGTTTCCCAAAAATAAATAGGAGATCTGTAACTGTAAAAAATATATTAGAATGCAACAGGTAGGAGTTCGTAAGTACTCCATCTGGTTTATGTCGAGAACCAAGAGCGTAGGTAATGTGCCGAAAAATGATATACAAACCTTATTCCGACGGAGTAGCACCTAAGGCGCAAAAGATATACTTCTTTCAGCATCTTTTCTGATATTTAAACCATCTTTAAAGTCACGGGTTGTTAGTTATTCCACTTTGCTCTTTCCTGCAGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATA</genome_strand>
        <mrna_strand>GCTCGGAGCCTTTTTTT-CTCCGGCAATTGCCGGCGACGACGACCATTTCCCGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAGTAAATGAGTGTTGCTACTTGATTGAGCCCATGCCTGCTACACCTATGAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTACCCGTGGTGGGATTGGGAATGTATTCAACAAATTAACAAGCAAAATTGGAGATCCCGTTGACTTTGAACTTCCAGATTGGTTGAGTAAATGGCAACCCACTCCCTATCCCTATACCTCTATAAGACGAA...............................................................................................................................................................................................................ATATATACCTCACCAATAAGGGTAAGCGGCGGCTAGAAGATGATGGCATATCTTGTACCTGCAGTTCAACAGCAGAATCTTCAGACGTGTGTGGCATGGATTGCCTTTGTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212496" ref_strand="+" ref_description="SGN-E212496 [cLEC-74-K21]">
      <seq>agcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaaggaaagtactgctatcggcaaaacatgattctcaaactgaagttcccccacaangaaattggagttctgactctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="43408" stop="48789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43708" g_stop="43809" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45853" g_stop="45931" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46022" g_stop="46193" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46321" g_stop="46401" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46517" g_stop="46697" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="614" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46698" i_stop="48349" i_length="1652">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48350" g_stop="48377" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="642" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48467" g_stop="48489" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="665" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E212496" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43708" e_stop="43809"/>
          <exon e_start="45853" e_stop="45931"/>
          <exon e_start="46022" e_stop="46193"/>
          <exon e_start="46321" e_stop="46401"/>
          <exon e_start="46517" e_stop="46697"/>
          <exon e_start="48350" e_stop="48377"/>
          <exon e_start="48467" e_stop="48489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCT</genome_strand>
        <mrna_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAG-GAAAGTACTGCTATCGGCAAAACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCACAAN.........................................................................................GAAATTGGAGTTCTGACTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212607" ref_strand="+" ref_description="SGN-E212607 [cLEC-74-J24]">
      <seq>agcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccangtagctgcgccctttcccaaagagaaagtactgctatcngcaaaacatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="43408" stop="47001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43708" g_stop="43809" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45853" g_stop="45931" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46022" g_stop="46193" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46321" g_stop="46401" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46517" g_stop="46697" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="615" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E212607" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43708" e_stop="43809"/>
          <exon e_start="45853" e_stop="45931"/>
          <exon e_start="46022" e_stop="46193"/>
          <exon e_start="46321" e_stop="46401"/>
          <exon e_start="46517" e_stop="46697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT</genome_strand>
        <mrna_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCANGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCNGCAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213254" ref_strand="+" ref_description="SGN-E213254 [cLEC-72-N4]">
      <seq>agcatgctatggtctagctgcacctcgggatgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccacatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacatgattctcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="43408" stop="47010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43708" g_stop="43809" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45853" g_stop="45931" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="181" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46022" g_stop="46193" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="353" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46321" g_stop="46401" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="434" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46517" g_stop="46697" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="615" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E213254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43708" e_stop="43809"/>
          <exon e_start="45853" e_stop="45931"/>
          <exon e_start="46022" e_stop="46193"/>
          <exon e_start="46321" e_stop="46401"/>
          <exon e_start="46517" e_stop="46697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT</genome_strand>
        <mrna_strand>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCACATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272498" ref_strand="+" ref_description="SGN-E272498 [cLEM-19-N18]">
      <seq>ttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccagatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaagtagctgcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="43455" stop="46961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43755" g_stop="43809" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45853" g_stop="45931" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="134" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.275" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46022" g_stop="46193" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="306" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46321" g_stop="46401" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="387" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46517" g_stop="46661" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="532" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E272498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43755" e_stop="43809"/>
          <exon e_start="45853" e_stop="45931"/>
          <exon e_start="46022" e_stop="46193"/>
          <exon e_start="46321" e_stop="46401"/>
          <exon e_start="46517" e_stop="46661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAGGTATGCACATAAACTTTTAACATAGATATTTGGACTGATGTTAGTTATTGCAGTATTTTGACAGCTTGTAGTCATCATTTATGACCTTGTCATTATCAGTCATTTCTTTGTCTTTTGCAAGAGTTTGTAAACAATTCTTCTCTCATGTAAATTTTCATTTTTCTGACAACTGATGCCAAGGAACTTTGATTAGAACCTGATGTTTCTTATTTCCACTTTTAAGAGGTACACTCTCCAACAAATATGTCAAGTTGGTTTGATCATAAGAAAATTTAATTAAATAATTACAGGTTTCTGCGTGAAACATTATGTGTGAGTGAGTCTTCAAGTGTTGATTACTTCAAGGGTTGGCACATTTTTGGCCAGCGAAAACAAAAATTTATAACACATGATGTGCAATTTAAAATAAATGCGCAATTTAAAATATAGACCATTGTCATTTTTGTAGGGTCAAATTGGCTGATTGAGTGAGTGATTTTAGTCTTAAATCAGACATAAGTTAGTTGCCTGTTGAAATGTAATTTAGATACTTAAAAACTGCGCAGAAGCACTTACATTTGCAATTTCTCCCATATAAACTGTGGCGGCAAAATACATTTCAAAACTTTAAGTCGAAGTACTATTTTCTTTTGACTCTTGGGAAGTGAAATTAGACAAAACTTTTGGCACAGCGGTGGTATATATCGTAAAGGATACACCTCACTGTAAGATAGTTTGCAAGAAAGAAAGTTAATGTTATGTACATAGATATTTTTGTCTACTGAAAGTTAATATTATGTACGTAGATATTTTTGTCTACCTGAGGGCAGGGAAAACTTGGGCAACTATGTTTGGTCTTGTTCATAACAGGTCTGGTCTAGTAAGTTTAAAGAACCTTCAAGGATGCTTAATCTTTTTCATAACAAGTCTGGTCTGGTAAGTTTAAAAAACCTTCAAGGATGCCTTTTTATAACCTTTCTTTGTAGTGGGGTTTCGTATCTAGCATAGAAGTTACCTACCTCTTTACGTGTTCTAAAACATCTAGTGTGAAGAAACTCTACTGATCCAATATAGGATCTATTGAAAGCAGTTCTAGGTTTTAATGTCATGTCTTGTCATATGAGGTGTACTAACCTTTGTGGAGCACTGAAGGTAGGATTAGTATAAGTTTCAATAATATTCTTCACTTCTTTGTGGTCTTTATTTCTTCATGGAGTTTGAAAGTTCCCCTTTTGATGGTTGCTATTTTTCTACTCTTTACCTTCCCATCTGCTTACGTTTATCTGCTTGCAGTTTGAAATAAAAGTCATTAACACAACCTGTAGTTAGTTGCTTATAGATCTAGAGATCTGCAGTATTCTGAATCTGGAAAATTGTTCTGCCAATTTCTTTGACCAACCAGACAATACCCTTTTAATCTAAGACCCTAATTACAAGGTTACTGACAATCACTTTTGACACCAATGTCTTTGATAAAGCACTGTTAAAATTTTCAGATGTGCTTTAATACTCTGCATCCTTTTTAGGAACTCTTTTGTCTACTTTCACTTTTTAAAAGAAAGAACTTAAGGAGAGGACATACTTATTATTTTTGCATTTTCTATATCAAGTAAAGTGAGAAGACTTCCATTAATTTGCATCCAGCGGATGCTAATGGCTACAACATAGCTACTTTAAGCAAATAGGTGATTTGATCAAGATTCTTTACGTTTTCAAGATCACAGCAACAAAAAGGGTTCCTTAAAAACCTAGCCTTTACTAACGTTTATAAGAGGGATAATTAAGCAAAAGGACCGTCATAAATCCTTTCTCAAAATACCACATTCATCAGTTTTTACCAAAAATGACCATTCGACACTTTTCAATTGCAAACAAGTACAATCTGCATCAAAAGTGCAGGCTGGTAACATTTTTCATATCTATTTTTGCATTTAATTCAGTTGTGTATCTGGTGAAGAAGTAAAGAAATGTTGGTTATTTTGTATTCTTCTTATTTTCGTTTCTTTTGAAAACCAAGCAATAATCATCTAAAAAACTAAAGTTTTGTTGACTCATAACGTGCAGACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAGGTGAAGTTTTTTAAGTTTCTTGCTTAATATGAACTAATAATTCGTGTTCTGTTCATCCTGAGCTCTTAATTTAGTAAGTTACAACTGCAGTTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATGGTATATAATTGTCATTAATATGTACTAATTATTTTTAGTTCTCTCAAATTCAAACCCTCTGTCAAGTGTCAAGGGATATCAACCTATTGTGTGATTTATTTGTTTTCATGCTCAATCATATTTTCAGGATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCAGTATGGACATTGATTGATTTTTTTGTTTTGTTTGTTTTGTGTCATCCTAGCGTCTTCAGTCAGCAGCCTGTTATCTAAGACTGTGCATTCGCCCTTCATCTAACAAGTTTAGCAGGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCC</genome_strand>
        <mrna_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG..........................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG...............................................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA...................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAAGTAGCTGCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256758" ref_strand="+" ref_description="SGN-E256758 [cLEG-40-A19]">
      <seq>tggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtcttaaactgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgatatattcttaacagtccaaaattgcaaagtatcctttgcctttgctcctgctgtaccaaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="46339" stop="50993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46639" g_stop="46697" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46698" i_stop="47211" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47212" g_stop="47319" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="167" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47320" i_stop="48349" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48350" g_stop="48377" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="195" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48467" g_stop="48557" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="286" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48558" i_stop="49769" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49770" g_stop="49860" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="377" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49861" i_stop="49955" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49956" g_stop="50034" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="456" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50035" i_stop="50571" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50572" g_stop="50693" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="578" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E256758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46639" e_stop="46697"/>
          <exon e_start="47212" e_stop="47319"/>
          <exon e_start="48350" e_stop="48377"/>
          <exon e_start="48467" e_stop="48557"/>
          <exon e_start="49770" e_stop="49860"/>
          <exon e_start="49956" e_stop="50034"/>
          <exon e_start="50572" e_stop="50693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGC</genome_strand>
        <mrna_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTTTGCCTTTGCTCCTGCTGTACCAAATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264735" ref_strand="+" ref_description="SGN-E264735 [cLEG-71-I7]">
      <seq>tggcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtcttaaactgtcgaaataaagatatacatgattcaacctcagtagctgatacgcgatatattctttacagtccaaaattgcaaagtatcctctgcctttgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="46339" stop="50976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46639" g_stop="46697" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46698" i_stop="47211" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47212" g_stop="47319" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="167" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47320" i_stop="48349" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48350" g_stop="48377" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="195" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48467" g_stop="48557" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="286" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48558" i_stop="49769" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49770" g_stop="49860" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="377" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49861" i_stop="49955" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49956" g_stop="50034" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="456" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50035" i_stop="50571" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50572" g_stop="50676" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="561" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E264735" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46639" e_stop="46697"/>
          <exon e_start="47212" e_stop="47319"/>
          <exon e_start="48350" e_stop="48377"/>
          <exon e_start="48467" e_stop="48557"/>
          <exon e_start="49770" e_stop="49860"/>
          <exon e_start="49956" e_stop="50034"/>
          <exon e_start="50572" e_stop="50676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCC</genome_strand>
        <mrna_strand>TGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTTACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258640" ref_strand="+" ref_description="SGN-E258640 [cLEG-50-A8]">
      <seq>gcatgccaggtagctgcgccctttcccaaagagaaagtactgctatcggcaaaacataaaaacacacaacaatttcaaactctatgtggactagagcttaaagaaaggcaacacgaggatcatgagtaatatatgtgaagctgaaacagacctactttttctgaggattctcaaactgaagttcccccaaaaggaaattggagttctgactctgctcggaaaatccagcatcctcggaattgcacaggtcaaattataagaataattcgctattctgaccagagtcctgttgattcactggagtcacgaatacctgatgtttccagttcctttggaatcataaaacagtttgacagaatcaccaaaaaacatttgatcatgtttgaagacggtagtactgagcaccttgacttgtcaaaagaagattggcgattttgtaactttgcttaatcgggtctttaactgtcgaaataagatatacatgatttcacctcagtagctgatacgcgatatattcttaacagtccaaaatttgcaagtatcctctgcctttgctcctgctgtacaaatgtgcaaagtttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="46341" stop="51005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46641" g_stop="46697" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46698" i_stop="47211" i_length="514">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47212" g_stop="47319" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="165" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47320" i_stop="48349" i_length="1030">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48350" g_stop="48377" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="193" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48467" g_stop="48557" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="284" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48558" i_stop="49769" i_length="1212">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49770" g_stop="49860" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="375" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49861" i_stop="49955" i_length="95">
            <donor d_prob="0.195" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49956" g_stop="50034" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="454" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50035" i_stop="50571" i_length="537">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50572" g_stop="50705" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="586" r_length="132" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E258640" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46641" e_stop="46697"/>
          <exon e_start="47212" e_stop="47319"/>
          <exon e_start="48350" e_stop="48377"/>
          <exon e_start="48467" e_stop="48557"/>
          <exon e_start="49770" e_stop="49860"/>
          <exon e_start="49956" e_stop="50034"/>
          <exon e_start="50572" e_stop="50705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACATGTATGTACCTCTATTCTGTCTGTTAACATCTAAGATACAAGAGCAGTGTGTGTCATCTGGAATCATTCTTTTGCTTGGACGTTTACCGTTTAGTTTTATGACTCAGTTTGTTAATACTTGTCCATAATTTTGTTGTGGTGATTTGCGAAGATGAAACTGATTGCAGATTAGACTTCAGTTTTATTGAGCCAACATCTTTCTGTTCCTTTCTGAATTTTGTCAGAGGAAGACATAAAGATGACAGGTACTTGGAATTACTGTCTAAAAGTAGTGTGTCCATTCCTTTTTCTGATTGGGCCGGGGCCAACCTGTTGAAGACCTGCTGCTTTTCCCTGGAAAGGAACTTTGAAGATCACTTTCCTATACCATAATGACAAAATTTGTTTTGACGATGGAACTTCTTGAATTTGTTGGAAAGTAAAGATGGAAAATAAGAGAAATATTATAAGATAGCCCATTTATGAGGTTTTATGTGTTCATTTGTTTACCATGAACTGTATTTATATGTTTGTAGAAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAGGTAAAAGTGAGAAGATTGCACAATGGTAATTGGTACATTAAGTATGTTATAGGTTCATATCCTGTTATGGTTTCTAGTAAGATGAACATAGTTGGCGAATCGTTCATGACTAGTTGGATGACTGACCTCATTGTTTGTGTTGGGTAGGGACCAACCCCATGGTATTCCCAGATTTATGAGCCTGAGTTAAGAGTGTTAGATGCCTGTCTCAATTTCACCAGTCTGGGATGATATAGGGAGATCATTCTTATATCTTAGGCGGGTTTAAAAATATGTTTTTTCACTAATTAGGACATGGTTTTGGCATTTTGCAATGTTTGAACTCTAATCTAACTAGCCACTAGCCAGCTGTTGCCTGAAATTGATAAGAGTGGTGTCAATAATGTTTGTCGTAATCTGTTTTGGTTCTTGCTTCGTAAATGTATTTACATGTGGATATTTTAAAGGAGTTGCAAAGCACTCTAGATTTGAGTAAGGCTAACTGTTTCTTCTTTTTTCCTGATTTGTTTTCTTGTTATTCTTTCTTTTCTTGGATTTGTTTCCTCCTCTATATCTTCTTTGCAAAATGATGTTATTAAGGAAGAGATGGTTTGAAATTCTTTTTCCTTGTTTAATTCTCATAAGAAGTGAAGACAGAAAACTTTGATATGTGCTAAGAGGAAAATAAGAGAAAAGATGAGGAAATTATTCTCCCTCATGCCCATTTACTTGTTTGATAGGATAACACTGAGAATATTTTCCCCACTTAAGTTTATATTTATTTAAACGAACAAGTTCCTCATCTCGTTTGCACTTCCTTCCAAGGCCAAGTTATAGATTTGTTTCCTCTTCTGCTTATTTTCTTCATAGTTCTCCCATTTTACTACCTTTGTTTCCATTGATGGATACAGATTAATGAGTTGCATACATTTTGTTTCTCAAAGAGGCATCAAAAGCTCTTCTAGTATCCTTCAGATTCTTTTACTAAAATATCTATTTCTCCCGATATTGTACTAATGTAATGCTAACCTTTTCTTCACTTATATTCCAGGATTCTCAAACTGAAGTTCCCCCAAAAGGTAGGTTATGCATTCATTTGACCTACAAGTATATCTTTGTTAGTGAAGTTACCTTTTCTTTGATCTAACTCGGGCCTCATCCTGTTTAGGAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAGGTATGTCGGTCTGTACGGGTGCATATTCTTTTTGTTAACATAGGCACTCTTGCATTTTCCATTGGCAAGTAATGGAAAATCAGCAAGTTCTTGTTCTATGAAAAATTTGTGATTGAGTTACCAATTATATTTAATATATATGTTATCTTTATTGTTGTTTTCTATTACTACTATCTTATGGTTTCACTTTCAGTAATCTTGGAGTCTTGTTTTAAAAATAAACAATAATAATAGGATCTTTTAAAAGTTTATAGATTGAGGTTCAAAACTTGTATATTTTGATCCCATGACCGTTTCTGTAGTGTAATTAAGTACACAAAATCTTGAACTAGAATAGTTCTATAGATTGAACTTATGTTTTATGTGCAGAACAGATAATGCATTATAGCTAGAGACAGTTATATAAGTTTTGGCCATGTCTGAGTAAAAGATATTTCCTTTTGGTCACCTAATGCTGTTCTGTCTATTAGGAAAGGGAGAAAGATTGCGAGCTTCCATACATGCTCCAGTTTTTCTCCATTCTAGTCATAAATCATCTGTCTGTGTACATATGCCTGAGAAAGTGCATTTAGAAAGGAATCAAATCACTTAGACATCTAATATATGTAGCCTAAATTTGAGCTTTGGCGGTTGGAGTATAGTATTTTAGCTTCCACTTTCATAATGTTTAGCTTTTTCTTTTAACTTTGAAGTATTTCTTAGTTCTCTAGGAAGTTTATTCAAACCTCAGATTTCAATTTTATATGCTGAGATATTTTCACGAAACCTTCTATTTATTTCTATTCATAGAGTAATTAGAAATTTGTTTCACATGTGGTCTCCATGGTTTCTTTTCACATAGCATCTCTTTTTTAAGTTCTCTTTGTAACTTTTTCTTATCTAATCCTCAGGTTCGTACTAAACATTCTTTGCATTAGGAATTGTCTACTAACTTTATATGCGTGTGGTAACCAAGTATGAAAGTGATGTCAATCTTGTTAACTTAATTTTTAAAGAAATATCTATTAAACGTAGAAGCTAGCAAGTTTCTCTGTTGGATACTCTATTAATTGGCTGGTCGTTCGTTTCTTCTCATTTATTTGTTCATATTTTTACATTCTTCAGTCCTGTTGACTTCCTGGTGAAATTTCTCTCTGGGAACTCTATCCATTTGTTGGACATTTATTATTCGGTTTCTTCTCATGTATTTGTTCATGTTGTTACACTTTTCAGTCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTGGTAAGGAAGTTTTTGAATTGTTTAGTGTGTAACTCGGACACCCATGATTTGGCTGAAGATTTACTCTTGTTCTCATTCCCCACCCGCCCTAACAGATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGGGTATTTTGTTCCAACTTTCTATTGAATTTTGAACCTATTATTTGTTCCTAGTGTAGTTGAAATCCCCAAAAACTATTTTATTGAGCCAAGTGTATCAGAAACAGCCTCCTAGCTCACCAAATTCAGGTCTGCATACACGCAGCCTCCCCAGAACTACTTGTACTTCAGTTGAAATGGATCCATGTACCTAGTTCAGGTTCAAAGGGTGAATTCTAATCTATGTTGCTCAGACTTTCCAAAAATGCTGCCGTAGACGAATCCTCTAAAACTGCACTACTTTTGGAGGATTCGGCACGCACTGGTCAACTTCGTTTTAATGAGTCTGAGCATCAGAGATTTATACACCAGTACAAAATACAGCAAACTTGTAGTAGTACCTTTTATTTCTATTTTGTATAATATTCGTGTGAGATTAGGTTGAATGGAACGATCTCATCAATGAGGATTCATATAGCCCACTCCAACTTGTTTGGGGTCGAGGCATTGTTGTTGTTGCTGTTTTCAATGGAATCTATAACGGAACGAGTACTTTTGCAGGTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTT</genome_strand>
        <mrna_strand>GCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAAACTGAAGTTCCCCCAAAAG.........................................................................................GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG...............................................................................................ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAACTGTCGAAAT-AAGATATACATGATTTCACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTTGCAAGTATCCTCTGCCTTTGCTCCTGCTGTA-CAAATGTGCAAAGTTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729816" ref_strand="+" ref_description="SGN-E729816 [LA22AG10]">
      <seq>cataatttcactttcttcagtgcaaattcgaatttgaatttcaatggcgacactttcatggaggcaccatacactaattcaagctctactctctcgtggtccgcttaaagagaaggattttcaatctatattcaccagaatcatcgacaaatcctcaggtaatcatcagtcactattcaatgaatacctgagaaagataaacggagagctcgcttatgtgcagttagagctacgggcatgtagaaaccagtatgacggacatgtgcattatggtgttgtgaacaatgtttcagatgagtcatccaaacttggtactaaatattcagttccccagatagctttctataaaggcattattgaagcaattgttcaagacgcagcagctcagggatttatatcgaccattgatgcactgaacatacggctcgaaaatcagtttctagctggaacagaatcccagtctcagagaggtcatattcctgcagcgtttagaaatttttcaatgtctcaaaaggagaggacccttgaggaacttgcgagggaccgctggctttctctaacagatggtaagataggactaggagttcgttcgttccttgatctcagaagttggtttcgcagtaatgaggttccagcatgtgaagtttgcaatgaagctgctgtgaaggctgagctttgcaaaaatgaaggctgtaatgttcgtatgcatatgtactgtctgagaatgaagttctccaaaagcaaggctgagaaagtttgtcccggttgtgggacaagatggcattacaacattgcaaaagtagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="51983" stop="56439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52283" g_stop="52440" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52441" i_stop="53225" i_length="785">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53226" g_stop="53422" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="355" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53423" i_stop="54877" i_length="1455">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54878" g_stop="54958" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54959" i_stop="55084" i_length="126">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55085" g_stop="55315" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="667" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55316" i_stop="55530" i_length="215">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55531" g_stop="55608" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="745" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55609" i_stop="56076" i_length="468">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56077" g_stop="56139" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="808" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E729816" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52283" e_stop="52440"/>
          <exon e_start="53226" e_stop="53422"/>
          <exon e_start="54878" e_stop="54958"/>
          <exon e_start="55085" e_stop="55315"/>
          <exon e_start="55531" e_stop="55608"/>
          <exon e_start="56077" e_stop="56139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAGGTTTTTGTGGTTTTTTTTGATTTTTTTTTTCGCGTATTAGATTGATTGTTTTTCGGTGTTTTGAGTTTAGTTCCAAGTACCCAAGTGCTAGTTTAGTTTATTCTGATCATTGCATTGGATTTTTTTTAACTTAGTTGTGGAATTTTGGTTTTAGTATTTGTGTTGTTGTTGAGTTTTTGTTTAGATATTTGGGGATTGGGGATTACAGTATCATTTTCAAGGACCATTTACATGTTTAATCATTTTCGTCTTTGTGTTGTTGGATTTTTACTTTGATATGTTTGTTTTCTAGCATAAGATTTAACTATCTCGTGGGCTATTCTCGAAGAAAGGAGGAGGAATTATGGCTTGTTGTTTGTGGAGAAGGGTTGAGCTGAGTAAATCTGGCTTATTATGAAAGAAATTATAACTATGGATTGATTACTGAAAGTTTTAGCTTAATGGATACATATTGTTTGTTCTCGAAAATTCGTTTATTTGTATGTTTTGGTGAATCAATAGGGATAATTGCTCTGTGTTTTGGAGGAAAGGCAAATCCTTTTTGAGCTTTAGTTAGTTTTCCGTTTCCCGTTTGGTTCGTAACTCGTAAGGCAGGAATCAAGTGTTTAATGATTCTGATTTGGAATTTTTGTTCTTTTCTTTGGATACAAGTATCATCATGTGATTGTCTGTTTAGTTTTCTAATTAGCATGTTAAAATTTGACTGGACTAAATAAATAAAATATTGTTTGGTATCTGTGTGAAAACATATTTGTTTCTGAAACTAATTTATGTCTATAATTCAGGTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATTGTGAGTTTTTCCTCCCTTTCTTTTGAACTGTGTCGAGAATGTCCGTAGTTGTTATATAGCCATCCTGTGTCCATATGAGGAAGTATCTTCATATTCTTTTGTCTTGCTTTGTGAGAGGGAATAGGATGTAAAATGAAAATCTTCATTAGTCTATGGAATAGAGAACAAGAACTAATAAGGTTGCATTAAACAGAACTGCTGAATGCTACTTTTCTTTTGCCTCCTTACCTCAACTCAACGATGACATTGCTGCATATCTTAGCTGGCAGTTCCACAGAAAGGAGCAAAAACTGTTTACTCTTCTTCCTTTCCTAGTCTGAGCTTGAAAGAAGATCTACATGCTATTAGTCCTCTAAAACATAAAACTTCATGCTTAATCTTCATAGTAATGAATTGCGTATAAACTTGCAACTTATGTAATGAATTTGATATGGGAATAGAGCAGCTGATGCTGTTCAAGTTATAGTACAAACATGATCATCCATCTTCTAGGATTAGTACTAACAACAACATACCTGGTGTAATCCCACAAGTGGGATCAGGAGAGGATGGTGTGTACACAACCTTACCCCTACCTTGTAGAGGTAGATAGGTTGTTTCCACTAGATCCTCGGCTCAAGTAAAGCATATCAAAATCTAAGTATGAAAAGTAAATATAGTAGTGAATAAGTGCTGAAAATAATGGAGAAAAGAACAGTAGCAACACAAATAATACAATATTTGAAGAAAAGAACACAGGTAATAGAAAGCATAACCACTAAGTTCAGTTAAATTAGAGTATTTTGGAGCTGACTTATGCAATCTAGTTTTATACAAAATAATATTCAGGAGTCCCATTTTAAATCAAAAGTTGAAGTTGGTCGATCTATTTCATATTAGCTCAAAATGTGGTTAGGGGAAAAGATTTGGTAGGCTTTTTTCACTTCTTTCTAATCTTGCTTGCTTTTTTTTTTTTTGGGAGAACGAATTGTTTGCTTCCCTTTTGTACTACGAATTTAAACTCACTTACTGTTGTAAAGGGGAGAGTCAAATAATTGAAATTTGTTGGTTTCAGTAATTGATGTTTTCTCTAATCGACTAAGTCTCAGTCCTCAACTAGTTGGGATTTACTATATGAATTTTCCATTCATCTGTGCGTTCTTCTCTATTCAGGCCCATTTCATTCAATTATTGAGTAAATTGCATACTTTGAGGTAACTTGGGGTCTCTACAATTGAAGGTTCTCATAATTCCACTCTTATTCCAACAGTTACATAGAATTTCCTAATGAGAATAAAAAGGATCCTGAAAACGTTGGGCTTAATGTATCTGTACAAAATTACCAAGTTTTACTTATATTATGTCCTTAGCTTAGACTGGTTAGTGTTTCTTAAAGAAAAATAATATGAATATATGAAGATCATTTCCTGACATAAATTTTTTAATGAGATTTATATGGTTACTGTTTAAGTGCAGATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAGGTTTCTTACTTCTTAACGATAAATGGTGGATGTGGTTCTGGATTAAAAAAGATCTGTATAAACTTTGTAAATTTGCTTGTTGTTAGATCAGAGTTGTAATTATAATTACTTTGCTTCGGTCAACAGTTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAGGTCTATTCTTCTCTTTAACTCCATGTTCACTATAGTAAGAATTTTGCCTTTAAAATTGGATAACTTTTTAGCTGTAAACTCACATGGTCTTCCTATATACTGTGCTTTGGTTTGATAATGTCACTGCAAACATCAGAAAGATGTTTATGTGTCTATGATAAACTATATGGCTGCTAAGTCATCCTATACTCATGGTGGTATGATTATTTGACCAGGCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAGGTATTCTTCTCTCCTAGTGTAACTTTCCATAAATTTCCCATTTGTCACTCAATGACTGAATCTTGCCCTTTTCTTTTTAGCATCAACGAATTTAATTATATATATGTTTTCCAATCTTTTGATGTTGAATCCTCTACCATAATAGTTGCATTCGTATTAGTGTCCATGATACTTGTTTAATCCTAGACTTATAAACAGAAGAATGTGAACCCCCTCTTAGTCACAAGAGATGAGATTATTCTGGATTTGCACATTATAGATGTTATTAACTAAATTTGCCCGACGTATAGGCAATCAAGAAAGCCGTATAATTGAACATATATATAAGCTAGATAAAAGTGAGCTAATCCAACTATCCAACCAATCATGTTATATTTCAAAGGGAAAACACTGTAAAGTTGATGATGAACACTCTCATCTATGCAGGCGATTGATGAACTAAATTCTTGTTGAAACCATAATTTGCAGGCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAAGCT</genome_strand>
        <mrna_strand>CATAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAG..............................................................................................................................TTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAG.......................................................................................................................................................................................................................GCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345168" ref_strand="+" ref_description="SGN-E345168 [cTOF-22-N4]">
      <seq>ttcattataagtgcataacttttcactttattgtttgagcattgtgttgatttctctaaacttgtttttcgttgaacaagattgttttttcatatactcatggaaagcaacaccgtgctcagaagttagagtgaaatgttatgcatttgtgattatatattttcttggctagagttgtattgccaagtgaagtgttttaattgatttgaaccttcgagtgagttgcttcgtgatcttcttatgccttagcttcagaacttaccactatatcatcaattctcgaagagtgtggcctacctgaatgctctcactaaactattcagactgttgtaaatctctactgttgaggctttatttttggcagttcttaaatgtgtatcttaagttttgtaattaatttatgtttgtttagtatatctctgttgttacccctttgtaatcttttggattcaatgantgaagttggtttggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="58095" stop="57021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57795" g_stop="57315" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E345168" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57795" e_stop="57315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGA-TGAAGTTGGTTTGGAAATATTGTAG</genome_strand>
        <mrna_strand>TTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGANTGAAGTTGGTTTGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317664" ref_strand="+" ref_description="SGN-E317664 [cTOB-8-E7]">
      <seq>tgttaccgcgccggctgcggcatctctgccacccaattccgccgtcatcgacgtttgtgccacggcggtggtttcatctatagctttgtacactgaaaaattactgattttgaattttcgatgatacccagatggaagaaacatagcaaagaatggtttttgtggatcagatctgtattcatcaaatgatggtattttccatgttaagaatctcgaagccaatcgattgaagactagtgctcgaaaaagttatgacgttgctggatggaatcagaagataaaaacttattgttcgtttgaaggaaatggcactatgcctctccctaaaatgtttaatagattgtacgaccagggcatgtggaagacgagctgctttcttatatcacaatgatcagtcttcggaaattgatgatatagtggtttggaagacgaggcaaaaaaagcttacgaagcaacctagttgaatgttcaaatcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="60421" stop="57536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60121" g_stop="59930" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59929" i_stop="58126" i_length="1804">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58125" g_stop="57836" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="481" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E317664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60121" e_stop="59930"/>
          <exon e_start="58125" e_stop="57836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATGGTATGAGCTCTTTACAAAGTTTTACTAGTTGTCGTGTTTTTTTTACTGTCGTTTTGATTGATTTGATGTGATTGAGCTTAGCTTGGAGTGTCGTTTTTTCTTTTCATAACTATTTGATTTGATTGATTTGGTGTACTTGAGCTTAGTTTAGAGATACGTGTAAGATTTGCGTATATTTTATACACAAACTATTTGATTTGGTGTACTTGAGCTTGGAGGTTCGTGTAAGATTTGCGTATACTTTCTACGCATTGGACCCGTTGTGTGATTCTATTGGATATGTTGTTGTTGTTGTTGTTAATTAGGGATTTTTTAGTTTGTGCATTTTGTACTATGATTTTTTGTTTTTTTAGTTGGTTCTGAATAAATTATTTATATATACTGAATGAATTTTTTTCGACACTAATATGGAATTTGAACTAAAAGTATACTAGGTTTTGATATTCTTATTAGCTGATGTGTGGGTAAGGTTTGCGTTAACTCTATACAGACCCCATTTGTGCGAGTTCATTGGATATGTTGTTGTTGCGTGGACTCTATGCTCATCGGACCCCATTTGTGTGAGTTCATTGGGTATGTTGTTGTTACACGAGGCAGAATCAGAACTCATTTAAGCATGGTTCATAGTGTTTGAAACATTATGGAGATGTTTAATTATCTTGAGATATGCTTTGGTTGTTTGTGCAAAACTTTGAAGTTTCGTCAAATTACATGAACTTTGTTTTGTGTCTCACACAACTGATGTAAGTTGTGTGAGGTCTCTTTTTGTTTTACAAGTCAGTGCGACCCAAATCGTTGGACTCACCAACTCGTGAAATAAAAAGAAGTCTCACGCAACTTGCGTTAATTCTGTGAGTCGCAAAGTAAATTTTCAAATCCTCTCTTCATATATTTCTTGCACATTCCAACTATTCTACTTATAAGATCATAAGAAACTGAGACTTCCAAAATATGTGTTCTTAACACTAATTTGAGTCCCTTTTCTAATTTAAAAAAAGGGCAAATAGCAATTTTGGCCTCAATGTTGTAGGTTTATTTCAATTTGGTCCTTGTTTAATTTAACTAAGCATAATTAATTGTCAATTAATATGAAATGCTTAGTTGAATTATATAAGGGCCAAAATCGGAATAAACATATAATATAAGGACTAAAACTGCTATTTGCCCATTTAAAAAAGACCAACAAGTCTTTTTCAATTTAAGGACCCTAAAAACTACACTATTTCTGGTTCAATTTGTTTGCCCTACTTTACTTTTAAAGTAAAGTAAAGTGAGACGAACAAATTGAATCAGAGAGAGTATAGTTTTTAGTTCGGTTCAAAAAAAGTATCTCCTTCCTTTTTGACAACTATTATGTTCCAACTTTCCACGTGACATGTTTAAAACCACACAATTAAAGGGTATTTTTGGCATTTGATGTATCTCTATCTGATGACCATAAGTTTCTGAAGTCATCTTTACTTAACTCTATCTCAAGTTAAAATAGGTCAAACAAATTGAAATAGAGTGAGTATTATATATTAAGAAAAAGCAATGGTATGGTTTATAAGGAACCGGTAAGGCGATAACAACCATTATATAAGCTTAATAGACTAAAATTGTTGTTATTAATTTAATCATTATGTTATGTTCTCCAAAGTTTATGAATAATTTCTGAATTGGTACTTGACTAGATGTCATTGATCTCTGTTTGCAGTGCTTTACTTGCCTTACATGTTACTTTCCATACTACAAAACTAGATTGAAGAAGAATAAGATGTTATAGTGGAGTGGAGCTTTTGATTTATTTGAATATATTTAGTAGGTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGA</genome_strand>
        <mrna_strand>TGTTACCG-CGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309434" ref_strand="+" ref_description="SGN-E309434 [cTOA-2-C14]">
      <seq>tcctctaagacagaatttccacaaaaaatggtgtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttcaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttagatttgtatacttgtgaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaagatatttggtgcatctcaaccacccactcttaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="62800" stop="63806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63100" g_stop="63506" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E309434" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63100" e_stop="63506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTT</genome_strand>
        <mrna_strand>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTGAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAAGATATTTGGTGCATCTCAACCACCCACTCTTACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358611" ref_strand="+" ref_description="SGN-E358611 [cLHT-22-A19]">
      <seq>acagaatttccacaaaaaatggtgtgtggtacaaaattgacaatagcctttcaaaaaaatccaatcttttatagtatatttttttcaatttttttctatttgtatacaaacatgtgtatgtgtcacaaaaatcagtaaactataaggggggctgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttacccttagatttgtatacttgtaaggagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="62809" stop="63862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63109" g_stop="63562" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E358611" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63109" e_stop="63562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTT</genome_strand>
        <mrna_strand>ACAGAATTTCCACAAAAAATGGTGTGTGGTACAAAATTGACAATAGCCTTTCAAAAAAATCCAATCTTTTATAGTATATTTTTTTCAATTTTTTTCTATTTGTATACAAACATGTGTATGTGTCACAAAAATCAGTAAACTATAAGGGGGGCTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCC-TTAGATTTGTATACTTGTAAGGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728944" ref_strand="+" ref_description="SGN-E728944 [LA19BH05]">
      <seq>acagaatttccacaaaaaatggtgtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttaaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgaggatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttagatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgtagaaaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttaagactatgttttcctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="62809" stop="63861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63109" g_stop="63561" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E728944" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63109" e_stop="63561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTT</genome_strand>
        <mrna_strand>ACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTAAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTAGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTAAGACTATGTTTTCCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398376" ref_strand="+" ref_description="SGN-E398376 [TUS-34-K16]">
      <seq>gtgttgtacaaaattcacaatagcctttcaaaaaaatccaatcttttttagtatatttttttcaatttttttctatttgtacacaaacatgtgtatgtgtcacaaaaatcagtaagctataaggggggttgtatcaattataagtttaaattattatgaaattatgacgatttacatgatttgattgtgacccttttcaaatctttgactcttgttaccctttaaatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaaaagcctgttttggtggacacaaaaatcaaggagaaagcttttaaggatatttggtgcgtcaaaaccacccactcttacccttttgttaaaaccctttctttttctgtttcatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="62832" stop="63839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63132" g_stop="63539" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E398376" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63132" e_stop="63539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTG-TTCTTGGTT</genome_strand>
        <mrna_strand>GTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGACGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAAATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAAAGCCTGTTTTGGTGGACACAAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCGTCAAAACCACCCACTCTTACCCTTTTGTTAAAACCCTTTCTTTTTCTGTTTCATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265962" ref_strand="+" ref_description="SGN-E265962 [cLEI-6-G16]">
      <seq>gttagatttgtatacttgtaaagagaaacaaacaaatggttttgttttctcagatttactgttgaaaaaacaagagcctgttttggtggacacgaaaatcaaagagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttttgttgttgatgaagcctatcaagaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcaaggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="63053" stop="67570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63352" g_stop="63659" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63660" i_stop="67184" i_length="3525">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67185" g_stop="67270" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="395" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E265962" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63352" e_stop="63659"/>
          <exon e_start="67185" e_stop="67270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCC-TTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCAT</genome_strand>
        <mrna_strand>GTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAAGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAAGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212154" ref_strand="+" ref_description="SGN-E212154 [cLEC-75-D22]">
      <seq>aaaaacaagagcctgttttggtggacacgaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="63117" stop="69356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63417" g_stop="63508" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63509" i_stop="67184" i_length="3676">
            <donor d_prob="0.605" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67185" g_stop="67487" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="395" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68882" g_stop="69056" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="570" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E212154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63417" e_stop="63508"/>
          <exon e_start="67185" e_stop="67487"/>
          <exon e_start="68882" e_stop="69056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATA</genome_strand>
        <mrna_strand>AAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254176" ref_strand="+" ref_description="SGN-E254176 [cLEG-34-M16]">
      <seq>gaaaatcaaggagaaagcttttaaggatatttggtgcatctcaaccacccactcttacccttttgttaagaccctttcattttctgttcttggtttttgtctttgttttccttttttttgttgttgatgaagcctatcaggaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="63145" stop="69300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63445" g_stop="63659" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63660" i_stop="67184" i_length="3525">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67185" g_stop="67487" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="519" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68882" g_stop="69000" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="638" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E254176" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63445" e_stop="63659"/>
          <exon e_start="67185" e_stop="67487"/>
          <exon e_start="68882" e_stop="69000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCC-TTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACT</genome_strand>
        <mrna_strand>GAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359995" ref_strand="+" ref_description="SGN-E359995 [cLPP-9-O10]">
      <seq>agaactagtctcgagtttttttttttttttttttgatgaagcctatcaggaagacccaattattggttgcttttgttgagaatgggatgagttaatctggcttttaggatcagggccgtcaagagatctagaagatcagatttgaggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaattaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagtgggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaatggccacacattatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtctagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatattattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaactgcccatatgcaggatctgaaatgcgctgtaccggtgatattcagtacctcgttgcacacttaaaagatgatcacaaagttgatatgcatgnatggctgtaccttcaatcatcgttatgtcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="63249" stop="69525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63536" g_stop="63641" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63642" i_stop="67184" i_length="3543">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67185" g_stop="67487" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="410" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68882" g_stop="69225" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="756" r_length="346" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E359995" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63536" e_stop="63641"/>
          <exon e_start="67185" e_stop="67487"/>
          <exon e_start="68882" e_stop="69225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGTCT-TTGTTTTCCTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATA-TATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTG-AATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATG-ATGGCTGTACCTTCAATCATCGTTATGTCAAATC</genome_strand>
        <mrna_strand>AGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGATCTAGAAGATCAGATTTGAGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAATTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTGGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAATGGCCACACATTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTCTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATTATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAACTGCCCATATGCAGGATCTGAAATGCGCTG-TACCGGTGATATTCAGTACCTCGTTGCACACTTAAAAGATGATCACAAAGTTGATATGCATGNATGGCTGTACCTTCAATCATCGTTATGTCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368673" ref_strand="+" ref_description="SGN-E368673 [TUS-22-L12]">
      <seq>tgagaatgggatgagttaatctggcttttacgtacaaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacanagttgatatgcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="63311" stop="69494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63611" g_stop="63659" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63660" i_stop="67184" i_length="3525">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67185" g_stop="67487" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="352" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68882" g_stop="69194" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="666" r_length="314" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E368673" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63611" e_stop="63659"/>
          <exon e_start="67185" e_stop="67487"/>
          <exon e_start="68882" e_stop="69194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTGGTTGGTTTTGCTCTTTTTTACCTTAGATTTTGGTGTTTTATTGTGTTTGTGGGGCTGCTGATGATTTTTGTGGTTTGCTTGTTTATGGGAGTTATTATGAGCTTATAAAGATTGGACCTTTGTGTCATAAAATTGGGGTGTTTTTCTTTCCCTTTAGATTTTGGGACTTTTGATGTGGTATCTTTTCATGGTTTGATGTTTATGTTTGTAGGGTGCTGATGATTTTTTGTGGTTTTCTTGTAAATGGGAGTTGTTATTAGCTCATAAGGATTGGACCTTTGTGTCATAAGATTGGTTCTTTTTTCTTCTTTACCTTAGATTTTGGGACTTCTGTTGTGGTATCTTTTTCTTGGTTTGATGTTTATGTTTGTAGGGTGCTGATATCTCTGTGGTTTGAAGGCTTTTAGGTTTTTACTTTTTCTTTCTGGGAAGGTGATGTTTTTGTTTGAATTTGAGGAATCAAATGTTAAAAGAGGGAAGATAAATGTGAAGAAAGTACATGGTGTAGCATCTTGGGTCTTTTTTATTTTTTGCTTTTGAGCTAGCTGTCAGAGTTTGTTTTGAATTGCCCTTTACTAGGATATTGAAAAACTGGAATGTTGGCAAAAAGTGAAGAGCTCAGAAATGTTCTGTTTTCAAGGATTTAGGTTTCTTTCTCCTTAAAATGATTAACAAAGTTTGGATCTTTGGATGTTTGTTCTAGTCGTGGCTGCTATTTTTGTTGATCAACAAATTTTGATGGATGATGATTTTTTTCCTTTTTGTGCTTTTCTTGTTTGTGGGAGTTCTTATGAGCTCATAAAGTTTGAACCTTTGTGTCATAAAATTGGTTTGAATTTTTGGTTTGAGGGTCTATTGGAAAAAGCCTCTCTAGCTTCAAGATAGGGTTAAGGTTTGCGTACACTACCCTCCCCAGACCCCACTGCGTATGTTGTTGTTGCTTCTTCTTTTTCTTCTCATTTTTGTCCAATCAAAGTTATGCCTTATCAGTAAGGGGAGTGAGGGTAGTTGTTCTTGATGTTGTTGGCATTGCATTCGCTTCTTGTGTAAGAAACTTCTTTGAGAAGATTTTTATATGGTACATTCCAGTGTGATGTTGGAAACAAGTGAGATACCTTAGTTGCTATGCTGTCTATGCTTTTTCCTATTGGGTGATACTTTGCTGGACATTTAGCATAGCCTTGTCAGGTGGGGAAACTCTCTATCCACACTTACCTTAAGAAATTTTTTGTTGAAGAACTTAGATTTATTCATCTCGGTGAGTTAGTTTGGTTAACCAAGGTATCCTGCACGAGGACTTAAGCTTTTGATGGCTTTGGCTGGTAGAATTTAAGCAAATGTGTCTGCGGACAATTTTGATGACAGATTAGTGTCGAAACTCGAGACAACTTTTGAGCGTATCAAAGTCACTTCCCTTAAAAGAGAAGGGAGCTGCTTGACAAATTTTAAGGAGTCTTTTGAAAATTGAAAATAATCATAATAAGTCTTCATTCTTCTTTTTGAGCAGGTAAAGTATCTACTAAGTCGTTATACTTATTAGACATCACTTTCTTTGTAAGAGTGTCATGATTATTAACGCGGCTAAATCAAAGTTCTCTGCCTATAAAAGAGTTGTATGAATGCCATTCCTTTTAATATTGCCGTCAGCCCTAGAATTACTAGCTTACTTTCCTTTTGAGAATTTCCAAGAATAGGAGTACTTTCCTCTTCAATAACTTGTTTCTCCCGCCGCCCCATCGTTGTCAATGAAATTCTAAATGTATATTGAAAAGAGTCACTTTTAATTCTTTATATGTCTCTACCTTTGGATCCAGTTGTTGTCGAATTATGATTATTGCATGGGAGTGATGGATAGTTCTCTAGCCAACACACATCTTTTAGCCAAAGATATAGTTTCCTGATGTGTTTTCATCTTTCTATCATATTTTTCCATGTGGATGTGGTTGTGCTATTCGTTCTCAATCTATGTGTCTTTGACTTCAAATTGACAAATCCAAAGTGCTACTTTGGTGCTACATAAAAGCACATTGCTTGGTTTTTGAATATCCTATACCACTGTGTTTATGCACTCTTTTCAATAATTAGTGTCCAGAAAGAAAAATATAGAACAGTTGAAATGAGACCAGACATTCTTTTTGCTGTGCAATTAATATAATCTAGCTCTTGGTTAGAAACTTTAATTACAAGTTAAGATACATTTATAAGCTTTGCAAAACATCAGATGCCAAATCCTCTTAAAAACTTTTACTTATTTAAAAACAACTTTGAAATTAATTTGGATGTTTAGGAACTTTTCAAGTTATAATATTTTCCATTTCAAACAGCATAATACACTTGAAAATCTTAGTCGAAGATTTGTTTCTTTGACTCTTTAGATGTGAAATTGGACAATTTTTTATGACCAAGGGACTAGTTTTCTTGGATTGTCCAAAAAAGTTCTGATTTTCTTGAGCATGTTGCTCTATCCATACCGTGAAACTCAGCTGCAGATGAGGTGTCAGTTTGGACAAAATGTCGCTAGATTTCCAATAATAAAGGCTGTCTTGGATAGGTTGTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCA-TGATG</genome_strand>
        <mrna_strand>TGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACANAGTTGATATGCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255947" ref_strand="+" ref_description="SGN-E255947 [cLEG-35-K13]">
      <seq>gtcaatccataccatgaaactagctgcagatgaggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="65914" stop="69301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66214" g_stop="66247" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66248" i_stop="67184" i_length="937">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67185" g_stop="67487" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="337" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68882" g_stop="69001" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="457" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E255947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66214" e_stop="66247"/>
          <exon e_start="67185" e_stop="67487"/>
          <exon e_start="68882" e_stop="69001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATCCATACCATGAAACTAGCTGCAGATGAGGTGTCATTCTGGATAAGATTTGTTCTCCGTATAATCGTCCTCTATGTATATTATCTGCTGTTATAAGATGTACTAGCAATAAAGGAATTTTAAATCTTGGACTAGGTTGTAGCAGCTTGGTTTCCATTTCAAATACTCTTCCCCAATCTTTGGTTGAATTAGACTTTTCTGGATGCTTTGTCCTGAGAGTAGCATAGCTTCGCATTATTTTCAATGCAAGGACTTTGTTAGTATCTGAAGGGAAGTTACAGATGTGCAACTATTTTTATATCTTAATTTTACTTCTTGCAGTTGCCAAAGGACCAATTGTAATTGCTTTCGGGGATTAGATGTGTTATGTTTTAAAAAAAAATTGATAGGTGAATTATTGGCAACAACATAGCAAGTTTACTTGGTGAATTAAGTCTTTGGTCAAACTCTTTTAGAATAATAATATTTTGATTTTACACAAGTATCTTCTTCTAGCAATTATTTGACGCATGACCTAGTTATTGAAAGACCAGTTCTAGACATGTGTGCAACTTGCTAATCTTGAATGCTGACAATCGAAAAGTTCAATAGACTAGTTATCTCATTATTTATAATAGGGACATTAACTTGTTTAACTGAACTTCTTTTCTGCTGTTCTCCTTTTCCCAACTCTCCTGTTAATTTTGCTTGCGAAATGAATATTTTCTTAAAAACTTACTCTGGTTAGCCATCGAAGACTTGGCAAAGAAATTTCCATATAAGTGTTGGTGTTAGATTGCATGCATTAACTGGCATTGAAACAGGGTGTTCTAACTAGTAGTGGCACAAACCTCCTTTCCGACGCCTTATTGCTTTTTCATTTATGTAGATCTTTTTCTTATTCTGTTTGGTAGGTTGATTTCTCTGCCCTTTTTAGTCAGAAAATGAATATCTTTCCAATTTATGTCCGTGCTTTCTTTGGTGGCAGGATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTA</genome_strand>
        <mrna_strand>GTCAATCCATACCATGAAACTAGCTGCAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268631" ref_strand="+" ref_description="SGN-E268631 [cLEI-13-P12]">
      <seq>aaaatcttatcttggatcagggccgtcaagagagctagaagatcagatttgtggaggatatatattgttgtcaacacatagtagtttatatagataccatggctcccggaggcagtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="66884" stop="69493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67185" g_stop="67487" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="317" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68882" g_stop="69193" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="629" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E268631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67185" e_stop="67487"/>
          <exon e_start="68882" e_stop="69193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</genome_strand>
        <mrna_strand>GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206844" ref_strand="+" ref_description="SGN-E206844 [cLEC-33-C18]">
      <seq>gtaactaccaggatattggtgattcccgcagtgcatattctgactatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactgaaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="66985" stop="69493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67285" g_stop="67487" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68882" g_stop="69193" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="515" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E206844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67285" e_stop="67487"/>
          <exon e_start="68882" e_stop="69193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</genome_strand>
        <mrna_strand>GTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGAAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709243" ref_strand="+" ref_description="SGN-E709243 [FA51AE04]">
      <seq>ccgatggtattgcaccagaaagtgctgagttcaaaaactccccctttagaaaagctgcagctgttattggtgggaagaatggagttggatctaatagtgctgttcatgagctacttgaatgccctgtttgtatgaatccaatgtatccaccaattcaccagtgtccaaacggccacacgttatgcgtgaagtgcaagtcaaaagtacatgtgtgtccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgccaaaagatttacctatagtcttgaagtaagtggatttggcagaaagttaacatggcagggagtacccaggaccatccgtgatagtcataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="67028" stop="70853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67327" g_stop="67487" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68882" g_stop="69265" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="545" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70352" g_stop="70554" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="748" r_length="203" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E709243" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67327" e_stop="67487"/>
          <exon e_start="68882" e_stop="69265"/>
          <exon e_start="70352" e_stop="70554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAGGTAGATTCTAATATTTCTTTAATTGGAATGGCAGCTTTGCTATGATAGTGATTTGTGACATTCTGTTATTCACCAAAGTGGCACAGGGTGGAGCTGCTTTTGGTACTTGCTGTTGAATTTCGATAATAATGCTGATATTTTTCCAAACGATTATTGAACACCAAATTTTAGTAGTCCAAACTATATAGAATGTATTGGATAGTGAATTTTGAATTCTAAGAAAACGTTTTACTGCTGTACTATCTTACAAGTTTGCTTTTGAGCTGATGCAATCATCTCAGTTTTGATAAGAGTTATGTCCAGCTTCCATAATATCTCATTGTGCTTTCTTTCTAGACAAATGACTATAAATGGTTCAAATGAGTTTTTAAATTCAAGTGTCACATCTAATGAAGGTGCAGCATAATATAATCAATTCGAGCTACTATAGAGAGAAAATGTCTGTTAGTCTGTTCAGTAGAGATGAATTAGTTCTCTCCCCATTCTTAGTAAAAAAGTTACTTGCAATTTGCTAGACAGCTAGAGTACCTTAACCTACTAGAAATAAGTTTCAGCCATCCCCATTATTTGCTTTCCATTGTTTGTTCTCTCCATTTTACTCTTCCCACTCTGGACATCCACTTTGGTAAGTCCCACATTGATTGAGGGAATGCGTTGTTGTCTCCTTATATGGTCTGAGGATATCCTCACCTCATGAGTTTACTTTTGGAATTAAGTTTGGTTCTGATACACTTCTTTTTATGGTAGTAAAGCACAAAGATGTCTTGGGCCCGATTTTCATCATCATTATCAAAAGGAATTTTCATGTTCTTTCTGAAGGAAAAAAATTAAACCTACACGTGTGTGGTTTACCACAAAGAAGGATAAATGTCTCATGTTATGGACAGTAAACTCTACAAGCTGTATTAGAGAAAATAATTGTGAAAATTTGATGCTTGTCGTTGGTAGTTAATGATAGAGAACAACTAGTTTCCTACACGATAAACATATTTATGTACTGTGCTACAGTCTACATACCCAATGCATCTCTTAGATCTATGGCCTATGTAAAGGAATTACCACAAAGAATTCAGTAAAGCATATAATTTAACATTAATAGCAGATTTTTGGTATGTTTTTGGGATAGAAAGTTAGAAAGATGATTTTCCTATCTTCCGTTTATGTAGTATTCATTGCATACTTCCTTCTCGAGAGTAGTGTGTGATGGTTTTGTGGCACAATCAAAGAAAAAGATATTATCCCTTCAAAAGATAAGTGCCTTCCAAAAAATGTTGGCCGACTGAACTTTTGTTTCGTTTTTCTATTTCTTTTTTGTCAAGTTTGTGATCTTATTCTTCAATTATATTGTGCATTTCTTGGTCTTTTACTGAGCTTGTTGATCTTTTTCTTGTAAGTGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAAC</genome_strand>
        <mrna_strand>CCGATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCCAAAAGATTTACCTATAGTCTTGAAGTAAGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCCAGGACCATCCGTGATAGTCATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236248" ref_strand="+" ref_description="SGN-E236248 [cLED-20-P7]">
      <seq>gtcaaaagtacatgtgtggccaatttgccgccatgagcttggaaacataagatgtttagcactggaaaaaattgctgagtcactagaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="68617" stop="69510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68917" g_stop="69210" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E236248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68917" e_stop="69210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCA</genome_strand>
        <mrna_strand>GTCAAAAGTACATGTGTGGCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373105" ref_strand="+" ref_description="SGN-E373105 [TUS-32-M1]">
      <seq>agaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcatcgtggggatgccctgaaagatagttagttatcgctaaattggttggtggcttaattttttgtaatggttctatacagtttctggtttttcggatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="68701" stop="71099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69001" g_stop="69265" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70352" g_stop="70799" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="711" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E373105" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69001" e_stop="69265"/>
          <exon e_start="70352" e_stop="70799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGA</genome_strand>
        <mrna_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAG-ATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGT-AATGGTTCTATACAGTTTCTGGTTTTTCGGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294141" ref_strand="+" ref_description="SGN-E294141 [cLET-13-L17]">
      <seq>agaattgccgtgccgataccaaatttatggctgtcaagatatattcacttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcatcgtggggatgccctgaaagtatagttagttatcgctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="68701" stop="71040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69001" g_stop="69265" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70352" g_stop="70740" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="654" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E294141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69001" e_stop="69265"/>
          <exon e_start="70352" e_stop="70740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAAT</genome_strand>
        <mrna_strand>AGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331455" ref_strand="+" ref_description="SGN-E331455 [cTOD-9-N6]">
      <seq>acttatcatactaggcttcgtcatgagcagaactgcagatttcgaccatacaattgcccatatgcaggatctgaatgcgctgttaccggtgatattcagtacctcgttgcacacctaaaagatgatcacaaagttgatatgcatgatggctgtaccttcaatcatcgttatgtcaaatctaatcctcaagaagttgagaatgctacatggatgttgacggtttttaactgtttcggtcaccagttctgcctgcactttgaggctttcaatcttggattggcaccggtatacatggcattccttcgttttatgggtgatgatgatgatgcgaaaagatttagctatagtcttgaagtaggtggatttggcagaaagttaacatggcagggagtaccgaggagcatccgtgatagtcataaaactgtccgagacagtttagacgggctgattattcaaaggagcatggcactcttcttctctggtggtgacaggaaggagctgaaactaaaggtagctgggcgtatttggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="68747" stop="70962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69047" g_stop="69265" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70352" g_stop="70662" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="530" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E331455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69047" e_stop="69265"/>
          <exon e_start="70352" e_stop="70662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACGGTTAGTCCTCTATCTTTCTTTCTCTCTTTTTTCTTTTTTCCTTTGTTGTGAAGGAGAGCCTTGGTGTAACTGGTTAAGTTGCCGCCATGTGACCAGGAGGTCACGTGTTTGAGCCATGGAAATAGCCTCTTGCAGCAATGCAGGGTAAGACTGTATAACCTCTCCTATCTCTACGAGGTAGGAGTAAGGTTTGTATACACTCTACCCTCCCTAGATCCCACTTTTAGGCTAACACCTGCCACCGGGTATGTTATTGTAATTTTACAGCTTTCCTGCACAAGTAAAAGAAGCACAAACGTCCAGTGTTTTGTGCTTCTTTATCAACAACTTAAAGGCAAAATCCCAATGAGATTCACATACCCTTTTAAGTCAACATTGAAAGAAAATCTTTTGAAAATTCTGATGCTGTCTTCTGTGGAAGGAGAGAAATTGATGGCTGTTTCTGTTAATTTGTTCTCTTAAAGTTAGATCTTGAACTCCTATTCAATACTTTGAGGAAAAATCTGTTACTATTTACCTTATCAAAAAAAGAAGAACCACTATTATGTACTCCTTCGTTACAATTTGTTTTACTTTCCTTTTAGTTTGTTTATAAAAGAATGCCTCTTCCCCTTTTTGGCAAAGTGCAAACTCTTTAATTCCAACTCTTCATATGACATGTTTAATGCCATAAGATTGAAGTACATTTTGATACATTTTACATATTTTGAGTTTAAGATGACAAGATTCAAAAAATTTCTCTACTTTCTTAAACTCCGAGACACATCAAAACCAGGCAAATAATTGAAACGGAGCAGTTTTCTTCATCCAATTGTAGAAGTGTTGTATAACATTTTGTTATTCATCATCGTCTTTGTACTTTAGCTATTGTTAGGAGGTTCATACTTCTATTGCCAGCTTTATCTTTTTTGGTTGAAAGTGAAGGCAGACAAGAGCATGCATAATTTTGTTATTCGCCTACCAATTAATTTTCCATCTAGCATTTAGCCATACGATAACCGAGCCTTTTTCTTTGTGGATTTTCACATTGTTCCATCTGCAATGATGTGCTGTTGGTAATAGTTTGTTTGCTGATTCCTGGAATAGGTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCG</genome_strand>
        <mrna_strand>ACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAACTAAAGGTAGCTGGGCGTATTTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396227" ref_strand="+" ref_description="SGN-E396227 [TUS-34-K16](-)">
      <seq>ctgattattcaaaggggcaaggcactcttcttctctggtggtgacaggaaggagctgaagctaaaggtagctgggcgtatttggcgagagccattgtaaactagatatatgcatcttccttcattgtggggatgccctgaaagtatagttagttatcgctaaattggttggtggcttaattttttgtaaatggttctatacagtttctggtttttcggatcgatcgtatcgattgtagtttagctcaactgtggatcatgtatctaaagttgtgaggcattttaagcttttctatgaccagccatatgataatctatctggttattagtctctttctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="70277" stop="71218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70577" g_stop="70913" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="353"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E396227" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70577" e_stop="70913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</genome_strand>
        <mrna_strand>CTGATTATTCAAAGGGGCAAGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATTGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389850" ref_strand="+" ref_description="SGN-E389850 [TUS-4-I2]">
      <seq>cacatgcttagcatcgatagggaggagcaagaagaggtggatgtgaacgatgatttggcgagggaccactcgttttacactcaagggttggagggtatacgccaagcgtatgtcaactttcagtctaccggtgaaccatttctaaggccctctgattattatgcggaaatggtgaagtctgacactcatatggagaaagttaagggccgactcttggctgagaagaggaggattgaggagtccgaggagaggaggaaggctagagataacaagaaacttgctaaagatgtacaagcacagaagatgaaagaacgaactaagcagaagaagcaagagattgagtccgttaaaaagtggaggaagcagaggcagcagagtggctttgataaagaagatgctggcggtctagacttggcatttaacggaggaaacacggataaaccctatcagagatcaaataagaagagacctggtgtatctcccggagatcgttcaggtggaaaagggaaggggttcaacaaaaagaggaaaaaccgggaattcaaggattctaagtttggatttggtggtagaaaaggtttaaagaagcagaacactgctgacactaccaacgacttcggtggattgcataaaggtgatcgttctgctaaaaacnacaacgcgttaagagatagttctactcatcagttactactcttgttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="79791" stop="81113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80091" g_stop="80817" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E389850" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80091" e_stop="80817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAACACTCGTTTTACACGCAGGGGTTGGAGGGTATACGTCAAGCGTACGTCAACTTTCAGTCAACCGGTGAACCATTTCTGAGGCCCTCTGATTATTACGCTGAAATGGTGAAGTCTGACACTCACATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCAAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAGAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAACAAAGTGGCTTCGACAAAGAAGATGCTGGCGGTCTAGATTTGGCATTTAATGGAGGAGAGGCGAATAAACCCTATCAGCGATCAAATAAGAAGAGACCTGGTGTATCTCCCGGAGATCGTTCAGGTGGTAAGGCAACATTTGGTGGAAAAGGTAAGGGGTTTGACAAAAAGAGGAAAAGCAGGGAATTCAAGGATTCAAAGTTTGGATTTGGTGGTAGAAAAGGTTTAAAGAAGCAGAACACTGCTGACACTACCAACGATTTCGGAGGATTCCACAAAGGTGATCGTTCTGCTAAAAACAACAAACGCGTTAAGAGATAATAGTTCTGCTCATCAGTTACTATTTTTTGTTGTA</genome_strand>
        <mrna_strand>CACATGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGACCACTCGTTTTACACTCAAGGGTTGGAGGGTATACGCCAAGCGTATGTCAACTTTCAGTCTACCGGTGAACCATTTCTAAGGCCCTCTGATTATTATGCGGAAATGGTGAAGTCTGACACTCATATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCTAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAGAGATTGAGTCCGTTAAAAAGTGGAGGAAGCAGAGGCAGCAGAGTGGCTTTGATAAAGAAGATGCTGGCGGTCTAGACTTGGCATTTAACGGAGGAAACACGGATAAACCCTATCAGAGATCAAATAAGAAGAGACCTGGTGTATCTCCCGGAGATCGTTCAGGTGG--A---AA-A-------G----GG-AAGGGGTTCAACAAAAAGAGGAAAAACCGGGAATTCAAGGATTCTAAGTTTGGATTTGGTGGTAGAAAAGGTTTAAAGAAGCAGAACACTGCTGACACTACCAACGACTTCGGTGGATTGCATAAAGGTGATCGTTCTGCTAAAAACNAC-AACGCGTTAAGAG---ATAGTTCTACTCATCAGTTACTA-CTCTTGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231503" ref_strand="+" ref_description="SGN-E231503 [cLED-4-O8]">
      <seq>acaggcttagcatcgatagggaggagcaagaagaggtggatgtgaacgatgatttggcgagggagcactcgttttacactcaagggttggagggtatacgccaagcgtatgtcaactttcagtctaccggtgaaccatttctaaggccctctgattattatgcggaaatggtgaagtctgacactcatatggagaaagttaagggccgactcttggctgagaagaggaggattgaggagtccgaggagaggaggaatgctagagataacaagaaacttgctaaagatgtacaagctcagaagatgaaagaacgaactaagctgaagaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="79792" stop="80724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80092" g_stop="80424" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E231503" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80092" e_stop="80424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAACACTCGTTTTACACGCAGGGGTTGGAGGGTATACGTCAAGCGTACGTCAACTTTCAGTCAACCGGTGAACCATTTCTGAGGCCCTCTGATTATTACGCTGAAATGGTGAAGTCTGACACTCACATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCAAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAG</genome_strand>
        <mrna_strand>ACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAGCACTCGTTTTACACTCAAGGGTTGGAGGGTATACGCCAAGCGTATGTCAACTTTCAGTCTACCGGTGAACCATTTCTAAGGCCCTCTGATTATTATGCGGAAATGGTGAAGTCTGACACTCATATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAATGCTAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCTCAGAAGATGAAAGAACGAACTAAGCTGAAGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338650" ref_strand="+" ref_description="SGN-E338650 [cTOE-15-N7]">
      <seq>aattacaaaaccctaaccctaaggagaagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcnctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81514" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81814" g_stop="81893" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="379" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="583" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="595"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E338650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81814" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAAAACCCTAACCCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AATTACAAAACCCTAACCCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279178" ref_strand="-" ref_description="SGN-E279178 [cLEL-4-D18](-)">
      <seq>gcacgagagaagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttgggtgatctcatcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81534" stop="83302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81831" g_stop="81893" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="146" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83002" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="260" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E279178" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279178" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81831" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTT-GGTGATCTCATCATGAA</genome_strand>
        <mrna_strand>GCACGAGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGGTGATCTCATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725244" ref_strand="+" ref_description="SGN-E725244 [FC26CA12]">
      <seq>ggagaagaccagcaattgctctcgaactccccttacaatcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81536" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81836" g_stop="81893" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="141" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="357" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="561" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="584"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E725244" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81836" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>GGAGAAGACCAGCAATTGCTCTCGAACTCCCCTTACAATCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715249" ref_strand="+" ref_description="SGN-E715249 [FB13DA07]">
      <seq>cgaataccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81539" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81838" g_stop="81893" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="139" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="355" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="559" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="569"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E715249" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81838" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CGAATACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355414" ref_strand="+" ref_description="SGN-E355414 [cTOS-25-E4]">
      <seq>aagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaacgaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81540" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81840" g_stop="81893" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="353" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84071" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="566" r_length="213" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E355414" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81840" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGAC</genome_strand>
        <mrna_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E289458" ref_strand="+" ref_description="SGN-E289458 [cLET-3-H6]">
      <seq>aagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcantcgctgttgctgcccccactggtggtgctgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81540" stop="83367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81840" g_stop="81893" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83067" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="315" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E289458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81840" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTG</genome_strand>
        <mrna_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCANTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E291337" ref_strand="+" ref_description="SGN-E291337 [cLET-2-M14]">
      <seq>aagaccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81540" stop="83316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81840" g_stop="81893" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83016" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="264" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E291337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81840" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTG</genome_strand>
        <mrna_strand>AAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299014" ref_strand="+" ref_description="SGN-E299014 [cLET-42-N1]">
      <seq>accagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagacgctgttgctgcccccactgatggtgctgctggtggtgccgcagctgctgcccctgctgctgatgaaaagaaggatgagcccaaggaagaaagtgacgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgattattgcttcttatttaaaaatttgacgagactttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81543" stop="84269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81843" g_stop="81893" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="134" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="350" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83969" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="462" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E299014" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81843" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTAT</genome_strand>
        <mrna_strand>ACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGACGCTGTTGCTGCCCCCACTGATGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGATGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCCCAAGGAAGAAAGTGACGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTATTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555098" ref_strand="+" ref_description="SGN-E555098 [cTSC-6-G21]">
      <seq>ccagcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81544" stop="84359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81844" g_stop="81893" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="133" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="349" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84055" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="546" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="578"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E555098" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81844" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</genome_strand>
        <mrna_strand>CCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735212" ref_strand="+" ref_description="SGN-E735212 [LB14CH11]">
      <seq>cagtaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81545" stop="84359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81845" g_stop="81893" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="132" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="348" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="552" r_length="204" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="574"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E735212" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81845" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CAGTAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713373" ref_strand="+" ref_description="SGN-E713373 [FB08BH01]">
      <seq>cagtaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81545" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81845" g_stop="81893" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="132" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="348" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="552" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="577"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E713373" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81845" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CAGTAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711716" ref_strand="+" ref_description="SGN-E711716 [FB02DB01]">
      <seq>ccctttagctctcgaactcgccgtacactcttcgccgtcttccctaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttactanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81551" stop="84361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81846" g_stop="81893" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="551" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="564"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E711716" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81846" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CCCTTTAGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCCCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336994" ref_strand="+" ref_description="SGN-E336994 [cTOE-20-B21]">
      <seq>agcatttgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81546" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81846" g_stop="81893" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="551" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="564"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E336994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81846" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AGCATTTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338404" ref_strand="+" ref_description="SGN-E338404 [cTOE-15-K1]">
      <seq>agcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81546" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81846" g_stop="81893" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="551" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="561"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E338404" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81846" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310691" ref_strand="+" ref_description="SGN-E310691 [cLEZ-15-E11]">
      <seq>agcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81546" stop="84347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81846" g_stop="81893" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84047" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="536" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E310691" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81846" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACA</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295885" ref_strand="+" ref_description="SGN-E295885 [cLET-27-M21]">
      <seq>agcaattgctctcgaactcgccgtacactcttcaccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctactgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggcggtggtggtgcagacactgttgctgaccccactggtggtgctgctggtggtggcgcatctgctgtccctgctgctgatgaaaagaaggaagctcccaacgaagaaagtgatgatgatgtgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81546" stop="84195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81846" g_stop="81893" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83895" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="385" r_length="38" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E295885" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81846" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCACCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTACTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGCGGTGGTGGTGCAGACACTGTTGCTGACCCCACTGGTGGTGCTGCTGGTGGTGGCGCATCTGCTGTCCCTGCTGCTGATGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCCCAACGAAGAAAGTGATGATGATGTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304929" ref_strand="+" ref_description="SGN-E304929 [cLEX-10-D9]">
      <seq>agcaattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggcgctggtggtggtggtggtgcactcgctgttgctgcccccactggtggtgctgctggtggtgccgcanctgctgcccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81546" stop="83390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81846" g_stop="81893" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="131" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83090" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="332" r_length="201" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E304929" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81846" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCT</genome_strand>
        <mrna_strand>AGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGCGCTGGTGGTGGTGGTGGTGCACTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCANCTGCTGCCCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311073" ref_strand="+" ref_description="SGN-E311073 [cLEZ-17-J20]">
      <seq>tcaattgttctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccctgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81548" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81847" g_stop="81893" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="130" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="346" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="550" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="562"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E311073" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81847" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>TCAATTGTTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCCTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356861" ref_strand="+" ref_description="SGN-E356861 [cTOS-22-O3]">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcngtgctggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctgctggtggtgccgcanctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccaatacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacaggtaaatgtaaccttgacataattatgggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81549" stop="84341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81849" g_stop="81893" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84041" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="527" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E356861" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81849" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTA</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCNGTGCTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCANCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAATACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGGTAAATGTAACCTTGACATAATTATGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294888" ref_strand="-" ref_description="SGN-E294888 [cLET-17-G21](-)">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81549" stop="84276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81849" g_stop="81893" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83976" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="463" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E294888" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294888" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81849" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294887" ref_strand="+" ref_description="SGN-E294887 [cLET-17-G21]">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcantcnctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81549" stop="84276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81849" g_stop="81893" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="344" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83976" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="463" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E294887" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81849" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCANTCNCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284827" ref_strand="+" ref_description="SGN-E284827 [cLER-19-K17]">
      <seq>aattgctctcgaactcgccgttcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgcgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcaccccctgttgctgcccccactggaggtgctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81549" stop="83365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81849" g_stop="81893" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83065" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="304" r_length="176" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E284827" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81849" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGG</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTTCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGCGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCACCCCCTGTTGCTGCCCCCACTGGAGGTGCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283991" ref_strand="+" ref_description="SGN-E283991 [cLER-13-J14]">
      <seq>aattgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcnctgttgctgcccccactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81549" stop="83353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81849" g_stop="81893" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="128" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83053" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="292" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E283991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81849" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGG</genome_strand>
        <mrna_strand>AATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCNCTGTTGCTGCCCCCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340904" ref_strand="+" ref_description="SGN-E340904 [cTOF-5-I11]">
      <seq>attgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtgggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81550" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81850" g_stop="81893" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="127" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="344" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="548" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="558"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E340904" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81850" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGT-GGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>ATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390849" ref_strand="+" ref_description="SGN-E390849 [TUS-47-E4]">
      <seq>ttgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgattatgatatgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81551" stop="84195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81851" g_stop="81893" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="126" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="342" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83895" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="380" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E390849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81851" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTT</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATTATGATATGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225313" ref_strand="-" ref_description="SGN-E225313 [cLEL-17-P6](-)">
      <seq>ttgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81551" stop="83318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81851" g_stop="81893" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="126" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83018" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="255" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E225313" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81851" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGT</genome_strand>
        <mrna_strand>TTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285317" ref_strand="+" ref_description="SGN-E285317 [cLER-20-C16]">
      <seq>tgctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81552" stop="84345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81852" g_stop="81893" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="125" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="341" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84045" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="528" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E285317" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81852" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAA</genome_strand>
        <mrna_strand>TGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716961" ref_strand="+" ref_description="SGN-E716961 [FB18CB08]">
      <seq>gctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81553" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="544" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="569"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E716961" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225501" ref_strand="-" ref_description="SGN-E225501 [cLEL-17-P6](-)">
      <seq>gctctcgaactcgccgttcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtcgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81553" stop="84265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="341" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83965" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="449" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E225501" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225501" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGT-GCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTG</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTTCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTCGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283446" ref_strand="+" ref_description="SGN-E283446 [cLER-12-L5]">
      <seq>gctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtccgtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggcgccgcaactgctgcccctgctgctgaggaaaagaaggaagagccccccgaagaaagtgatgatgatatgggtttcagcctgtttgattagaagctcctcccaacacgatttttgcttcttatttaaaaatttgacgagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81553" stop="84264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83964" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="447" r_length="107" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E283446" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCCGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGCGCCGCAACTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCCCCGAAGAAAGTGATGATGATATGGGTTTCAGCCTGTTTGATTAGAAGCTCCTCCCAACACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215241" ref_strand="-" ref_description="SGN-E215241 [cLEL-20-M15](-)">
      <seq>gctctcgaactcgttttacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggcggtggtgcagacgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81569" stop="84247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83947" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="430" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E215241" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAA</genome_strand>
        <mrna_strand>GCTCTCGAACTCGTTTTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGCGGTGGTGCAGACGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215529" ref_strand="-" ref_description="SGN-E215529 [cLEL-20-M15](-)">
      <seq>gctctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggttgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81553" stop="84184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="341" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="83884" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="368" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E215529" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="83884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGG-TGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGAT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232206" ref_strand="-" ref_description="SGN-E232206 [cLEL-5-A17](-)">
      <seq>gctctcgaactcgccggacacttttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81553" stop="83313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83013" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="248" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E232206" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232206" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTG</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGGACACTTTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232562" ref_strand="-" ref_description="SGN-E232562 [cLEL-5-A17](-)">
      <seq>gctctcgaactcgccgatcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81553" stop="83312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81853" g_stop="81893" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83012" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="247" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E232562" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232562" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81853" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCT</genome_strand>
        <mrna_strand>GCTCTCGAACTCGCCGATCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307673" ref_strand="+" ref_description="SGN-E307673 [cLEY-16-L12]">
      <seq>tctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttatttccgactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81555" stop="84376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81855" g_stop="81893" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="122" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="338" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84075" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="555" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="565"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E307673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81855" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</genome_strand>
        <mrna_strand>TCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250552" ref_strand="+" ref_description="SGN-E250552 [cLEG-21-K9]">
      <seq>ctcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81556" stop="84359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81856" g_stop="81893" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="121" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="337" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84055" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="534" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="550"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E250552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81856" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</genome_strand>
        <mrna_strand>CTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338004" ref_strand="+" ref_description="SGN-E338004 [cTOE-14-E12]">
      <seq>tcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81557" stop="84335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81857" g_stop="81893" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="336" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84035" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="513" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E338004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81857" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTAT</genome_strand>
        <mrna_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336574" ref_strand="+" ref_description="SGN-E336574 [cTOE-4-A20]">
      <seq>tcgaactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctccnnnttgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtctctgttgctgcccccactggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81557" stop="83356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81857" g_stop="81893" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83056" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="287" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E336574" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81857" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGG</genome_strand>
        <mrna_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCNNNTTGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCTCTGTTGCTGCCCCCACTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284562" ref_strand="+" ref_description="SGN-E284562 [cLES-3-D12]">
      <seq>ttgaactctgcgttcactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaaggtgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81557" stop="83313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81857" g_stop="81893" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83013" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="244" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E284562" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81857" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTG</genome_strand>
        <mrna_strand>TTGAACTCTGCGTTCACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGGTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253549" ref_strand="+" ref_description="SGN-E253549 [cLEG-24-L3]">
      <seq>gaactcgccgtacactcttttccgtcttctctaaggttagcagatcaataggtcgcgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaattttaactttagctaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81559" stop="83303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81859" g_stop="81893" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="118" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83003" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="232" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E253549" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81859" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAAT</genome_strand>
        <mrna_strand>GAACTCGCCGTACACTCTTTTCCGTCTTCTCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGATCAATAGGTCGCGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTTAACTTTAGCTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310841" ref_strand="+" ref_description="SGN-E310841 [cLEZ-15-I14]">
      <seq>aactcgccgtacactcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcaattatgttacttatttccgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81560" stop="84373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81860" g_stop="81893" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="117" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="333" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84073" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="548" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E310841" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81860" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGCCGTACACTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTC</genome_strand>
        <mrna_strand>AACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAATTATGTTACTTATTTCCGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303693" ref_strand="+" ref_description="SGN-E303693 [cLEY-7-M19]">
      <seq>ctcttcgccgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttatttccgactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="81573" stop="84376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81873" g_stop="81893" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="104" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="320" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83858" g_stop="84075" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="537" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="547"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E303693" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81873" e_stop="81893"/>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCGCCGTCTTCTCGAAGGTAAGTGATTTGTTTCTCCATTTTTAATGCAAATTAAGCTTAAGAATATAGTTTTCGCAGTTTTTTCAGCATTTTTTATCATTTTGTTTCGTCATTTTTGGGATGCGTTTGAAATTTCCATGTGGTTTTTACTGTCTCGTAGCATATTAGTTTATTTTTTGCTATTTTCAATTTGATTGAGCATTTTTATGTAGTTTCACCATGTTTATTGATATTAAGCTTGCTCATGTAGTCTTATTAGCATTTTTAGAAATTTATTTAGTTATTTTCAGGTGCGTTTGAACATTTTCATAAAATTTTCAGCATTTTGAATGCAAATGAGTTCACACACATTGATTTTACAAATTTTTTAGCATTTTTATACGTCCATTACGTCAATTTTAGCGGCATTGATCAATTTCATGTAATTTTCACCATTTTAAAAGTGATTGAGCTTACTCATATTGTTTGAACATTTCCGTGTGGTTTTCATCGTCCATCAGCTATTTTTGTGCTTTTCCATGTGACTTCCACCATTTTTGAATGTTGTTAAACTTTCTCATGTAGTTTTCAGCATTTTTATCATTTTATTTCATCATTGTGTGTGTTTGAACATTTCCATGTGATTTTCCATTTTCAATGTGATTGAGCATTTTCATTTTTTTGGATGTTTATAACAGGTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</genome_strand>
        <mrna_strand>CTCTTCGCCGTCTTCTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718818" ref_strand="+" ref_description="SGN-E718818 [FC05DF08]">
      <seq>cgtcttctcgaaggttagttgatcaatatgtcgtgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82251" stop="84359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82553" g_stop="82635" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="96" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="312" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83858" g_stop="84068" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="522" r_length="210" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E718818" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82553" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCC</genome_strand>
        <mrna_strand>GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293023" ref_strand="+" ref_description="SGN-E293023 [cLET-12-L4]">
      <seq>tgcggagaagttgcttgcacttatgctgccttgctcctccatgatgaggacattccaatcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82273" stop="83302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82573" g_stop="82635" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82890" g_stop="83002" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="176" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E293023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82573" e_stop="82635"/>
          <exon e_start="82890" e_stop="83002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAA</genome_strand>
        <mrna_strand>TGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718631" ref_strand="+" ref_description="SGN-E718631 [FC05BA05]">
      <seq>gctgccttgctcctccatgatgaggacattccaatcactgcaaagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaaacttgctgaaaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcacctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattaaaagctcctcccagtacaatttttgcttcttatttaaaaatttgacgagactttgttataccacccttgttgaaaagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82297" stop="84349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82597" g_stop="82635" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="255" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83858" g_stop="84049" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="446" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E718631" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82597" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATC</genome_strand>
        <mrna_strand>GCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT..............................................................................................................................................................................................................................................................GCAAAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAACTTGCTGAAAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCACCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAAAAGCTCCTCCCAGTACAATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATACCACCCTTGTTGAAAAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310790" ref_strand="+" ref_description="SGN-E310790 [cLEZ-15-C21]">
      <seq>atcactgcagagaaaatttcaactttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82590" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82630" g_stop="82635" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82890" g_stop="83105" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="222" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="426" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="436"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E310790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82630" e_stop="82635"/>
          <exon e_start="82890" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGTAAGATTCTCTTGCCCTATTTATTCTAATTCTAGTATTTTTGACATTTTTGTTGTATTGGTAATTTCGTTATAGGTGTGTAATATTTTCAAAAATCCTATTGGTTTTTTCTTCAATTATGCTTTTTGTGTAATATTTCCAATTGAGTTTTTTCATGTGTTCTAATATTTTGATTGTGTTTAATGTGTAATATATTTAATTATAGGGCTTCAACGTTGTATTGATTGAATCTGTGTGTGTTTGATGTGTATTAGGCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>ATCACT..............................................................................................................................................................................................................................................................GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224123" ref_strand="+" ref_description="SGN-E224123 [cLEL-19-K2](-)">
      <seq>tttagttaaagcagctaatgtgacagtggaaccatactggcctctcctgtttgctaagcttgctgagaaaagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82607" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82907" g_stop="83105" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="403" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="421"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E224123" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82907" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>TTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAAAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357142" ref_strand="+" ref_description="SGN-E357142 [cTOS-22-N18]">
      <seq>cctctcctgtttgctaagcttgctgagaagagaaaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattagaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccttgttgaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggtttatgaacatcagttatgttacttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82647" stop="84363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82947" g_stop="83105" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83858" g_stop="84062" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="363" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="376"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E357142" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82947" e_stop="83105"/>
          <exon e_start="83858" e_stop="84062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</genome_strand>
        <mrna_strand>CCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238650" ref_strand="+" ref_description="SGN-E238650 [cLEL-9-H17](-)">
      <seq>aaccttggtgatctcatcatgaatgtcggtgctggtggtggtggtggtgcagtcgctgttgctgcccccactggtggtgctgctggtggtgccgcagctgctgcccctgctgctgaggaaaagaaggaagagcccaaggaagaaagtgatgatgatatgggtttcagtctgtttgattaaaagctcctcccagtacgatttttgcttcttatttaaaaatttgacgagactttgttatagcacccatgttaaagagatttttgatctgcttgtcacagttaaatgtaaccttgacataattatggcctatgaacatcagttatgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="82680" stop="84359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82980" g_stop="83105" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83858" g_stop="84055" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="323" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="347"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E238650" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82980" e_stop="83105"/>
          <exon e_start="83858" e_stop="84055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAGGTGAGAAGAAATATTTCTTAATTTACTTCTATATAACTATGAAAGGGAGTTATTGTTGTTGAAAAAACTAAAAAGTGATTTTGATGGGCATATCCTGAAATCTTCTTAAGAGTCATGTTTTTGGATATCATTTACTCTTAATGAGAATAAAATTGATAAATAATTTACAAAAAATGTTGTTGAGTCAAAAGTTTTGGCAAAGATGTTAGTGATGAAAGGTGATTTTGAATACATGGTTGAATCTTTTGATGATGAATTGTGTATTCCTAAGATATGTTTTGGATGTTGAACTTATTATTAAGGTGTTATGATTTGGGGTCGGTATAAGAAAGTAATTATGATTATTTGGTGGAATCTCCCTCCTTAATTGAGAGTTCTTGAATTATGTTAGATTTGTTTGTAGGATCTCCTCAATCATGAAGTTTATAAATGTTTTTGAAGTTTTATCTTTTTACTTTGAGCCGGTGAGAGCAGAGTCGTAATGCAGGCTGAGGTTATGTGTGTGGTAGAGCTGAGTAGTTTCTGACCCAACCTTGTATGTTTGCTAAACAGTTATTGTACATAATCACAAATTAGAGTTAGAACCCTTTTATGGTGAGAGTGGAGGGAAGTAATGACGACATGTGATTCAGTCAGTTTGATTGGAGGGAGAGTAACGACGACATGTGATTCAGTCTGTTAGAATAGAAGTAGTTCATTTTCATTGCGAACTTCTGAACTTTTTTGTTTACTTTTGGTGTAACGACGAACAGGAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTAT</genome_strand>
        <mrna_strand>AACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAAAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCATGTTAAAGAG-ATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGCCTATGAACATCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739567" ref_strand="+" ref_description="SGN-E739567 [LC17DH02]">
      <seq>ccatgctgtagaacaactcgttaaagatgaatctcctgaaaaaatgacctcggatcaaattttctggttatatactatcatgataacggccacagtagtaaaacttgccctttggttatactgcagaagctcaggaaacaacattgtccgtgcctacgcaaaggatcactattttgacgtggttactaatgtagtcggactggtagcagctgtacttggcgataaattctactggtggattgatcctgttggtgccattatgcttgcactttataccatcaccaactggtcaggaactgttttagaaaacgcagtgtcactagtgggacaatcagccccacccgaatacttgcaaaagttaacgtatcttgtgataagacaccctcaagtgaagcgtattgatacagttcgagcctacacatttggtgtcttgtacttcgtagaggtagatattgaactcccggaagatttgcctttgaaagaagcacatgctatcggagaaactctacaaataaaactcgaaaaactccctgaagttgaacgagcattcgttcatctcgattttgaatgtgaacacaaaccagagcactctgttctcagcaggttaccaaacactgaaccttaggttcatgtttacgtttaagcccggataaaggaagagggttgttattattatcgacgattcggggttttgttgtttttttttacacacattttaactatataaatgtgtatattcatatgatccagcataagggattgttgaaaagagaggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="91185" stop="92873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91485" g_stop="91647" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91648" i_stop="91730" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.588" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91731" g_stop="91881" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="314" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91882" i_stop="92021" i_length="140">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92022" g_stop="92152" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="445" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92153" i_stop="92239" i_length="87">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92240" g_stop="92573" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="779" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E739567" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91485" e_stop="91647"/>
          <exon e_start="91731" e_stop="91881"/>
          <exon e_start="92022" e_stop="92152"/>
          <exon e_start="92240" e_stop="92573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCTGTAGAACAACTCGTTAAAGATGAATCTCCTGAAAAAATGACCTCGGATCAAATTTTCTGGTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAGGTGTGTACTGTATCTTCGCGTTCTATTTTTGGCATCGTTATCCTTGTAGTCTAGACTCGTAACTTGAAGATACCTTTCGACAGGATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAGGTATCGTCTCATTCCTGCACAACTTTAGTTTGCATCGATAGCCTGGTTGAAAAACGGAGTGTTCTACTAGAAGATTCTGTTAGTTTTGTTTCGTCATTATACTATGTTTGATTCCATACTGAACGACGTTCTTCATGTAGTGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAGGTCAGTCTCTGAAAAAACCATCTATAATAGCACACGAATGGTTCTTCTATCGATGATTTTGAGACTCGTTTGCTTACTGTAACGTAGGTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATAT</genome_strand>
        <mrna_strand>CCATGCTGTAGAACAACTCGTTAAAGATGAATCTCCTGAAAAAATGACCTCGGATCAAATTTTCTGGTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAG...................................................................................GATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAG............................................................................................................................................TGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAG.......................................................................................GTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316998" ref_strand="+" ref_description="SGN-E316998 [cTOA-27-A23]">
      <seq>tggagttcaccggatcttcaccgtccatcggaaatcattaccggcgaatccatttcgcagtgaaaaatctgccggagttgtagcaattccggtgatggatcaatggagaactaaaacaccggagaaaccgatccaaaatcgcatggcgcgatcactgcagtccctgaaagacgtcagagaagcttctcagaagctccggaaacacgatctgatccaacgcgaggtttctgatccgttattaagctacggtgaagtgaaatctccattggtagctggatcgccggtttctgaacggaagaagcatgtgaactcggtaaagctgccggaaaagtatgaaatgttggaaaaattcttcaatagcatggatagttcaattcggctgctacatttgaagggatctgcaacaactttcactaatattagtgcgaaagtagagagtttgatcgataagaggtttacttgcagtcatttagctcagctgaagtttattttacctgaagccattgagataaagaagattctcaagcacgatgagcgcagttggtgcatgaagccggatctttatatcactttaaatgcaaatgcagttgataatagtgagaagtggaaatctaacagtagcagtgttctattgaggaaatattccgctctcggctcttggatttcttcaagtcacaccctgagggtgatgacanttcctgagggatgctgccaggcccattcactcagtctaagcaagtagtgacccactcatgtagaccttctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="95994" stop="98956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96294" g_stop="96624" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96625" i_stop="97313" i_length="689">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97314" g_stop="97434" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="450" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97435" i_stop="97528" i_length="94">
            <donor d_prob="0.571" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97529" g_stop="97763" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="684" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97764" i_stop="98571" i_length="808">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98572" g_stop="98656" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="769" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E316998" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96294" e_stop="96624"/>
          <exon e_start="97314" e_stop="97434"/>
          <exon e_start="97529" e_stop="97763"/>
          <exon e_start="98572" e_stop="98656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTCACCGGATCTTCACCGTCCGATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAAGTGAGTGTTTCCTGTACTTTCCGTTTTGATGATTTATTCACTTTGTGTCTCTTTGACCAGATACTTACTTGAATATTCTTCAATAAGTTCATCGCAATTGTTTATTTATTTATGCTTTTGATATGAAGTGAAACTTAATTTAAATAAATTTTCTTCAATATGTTCATCACAATTGTTTATTTATTTATTTTGCTTTTGATGCGAAGAAAACTTAGTTGAATAAGTTTTATCCTTTGAAGAAATAATAAGATATTTAGATTTAACAATCGAGGCTTGCTCAAGTGGTTAAGCATCGTTGATTGTGAGCTTAAAGTCACACTGGATGGTAAGTAGGAACACTACTGATCTTATGCCGGATTGGGTAGGACTTTGGAAAGCAAAAGTAACAGAAAATTTGGGGACTCAGGGAATTTGGATGTAGAATCAATATTTGTAAATTAAGTAAAAAATATATATAATAATAAAAAAAGCTACTATATGTGATATAATTAACAATTCAAAAGTTTATATGAAAAACTTGTTTGACTCTCGAAATCCAAATACGGCACATAGATTGGGATGGAGGGAGTAGTTGTTTCAATATATTAGCTTTTGAAAGTATTAGTCTTATTTGTTTATTAGCTAAGAGTGATGACAGGGTAAGAGGCTTGGTTGAGTTTTTCTTAATGTGTGTTTCTATTACTGTATAGGTATGAAATGTTGGAAAAATTACTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAAGTATGAAGATCTAATGATGTTTGAACATTTTCATTGATGGTGTTTGCTGTACTGAGAGGATTGTTAATAATTTTGTTCTTTTTGAACTTTTTAGGAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGGAAAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAGGTAATCAATTTTTCTGATGTTTTGATTGTTTGTGTTGAACAATCTCTCATGGTAGGAGTAAGTTTTGCGTACACTGAACCCTCCCAAACCTCACTTGTAGGATTACACTAAGTATATTGTTGTTAAAGATTGAACTATCTGCCAGAATATAGCTGATGCAGTATTGAGATTTATTGGCTTGAATTCATGTTATTTAGAAAGACTAATATGTTCTGAGATGCTATTTGACTTGCTAAGTGCTCTTGTTATTTCAAGCTCATTTTCTGTAAGACATCCCGACCAGTGTTTCATTTGCAAACAATTGCTCTTGAGCATATTAAGAGGAATATGAACACTTTTAACAGCATAGCAGCAGAAGTTTCAAATGGAATATGAGATTTTAAGCTGGAGGTCTTTCATTATACTATACGTTCTTGGGAAAGTGATGCAATTGTTTCTGGCATTTAGATTTGTGCAGTGCCTGTGCAACATTGTAGGTGCTTTAGTCCAGAAAATACTAAACTTTGTATGAGAATGAAGCTATACGTGAAGCACCTAAAGAGTGGTAATACTGTTTCATGAAGCTACAGAGTACTTCAGTGGCTGGCCTGCCATATTGTATGAAAGGAATAGCTTTTGATAAGAAAATTTGTGTTGAATTTGTATTGTGTTTTACTCTGACTATCAGCATTGAATAACCAGCACACACACTTTTACATATATGAGCACCATGTTGTCAGCTTAGACATCGTTGAAGTATAATTAAATGTTTTCCTGTAAATTTTATTTCCATGATAAACAAATAAGATAATTACTGTTTCTGTTTCAGGGTGATGACA-TTCCTGAGGGAATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCAACTCATGTAGACCTTCTGGCT</genome_strand>
        <mrna_strand>TGGAGTTCACCGGATCTTCACCGTCC-ATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAATGTTGGAAAAATT-CTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAA..............................................................................................GAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGG-AAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGACANTTCCTGAGGG-ATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCCACTCATGTAGACCTTCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732151" ref_strand="+" ref_description="SGN-E732151 [LB01BF08]">
      <seq>ctcgggctcgtttctctagcttcaataccccttaatgtcccaagttccaccaagaagaaaacagtagcatgttctgatgctcctaagttatctctaaaacaaactagcatcatgaaatgctcagcaggaggggttgttttggctagttcaccatgccatccacctgctcttcctatgattgaagccaaaaagggagaagatggttctacatccgctccagcaacccctatgctcgaacctcctaagagatgttacatgagtccagatgatccagctgaatcaccaataaaactagctagacgcccgtcaactagaaggtcgttgctcttcggtactcctgtgaagagtgcaaatgctggtgataaagtctgcgagaatggaaggttttcaactgataatgatattcttgacattcttcctgagaatcttctgcaatcgataggagaaaaggagagtgaagcactagcggagcaaaatccagccatatcccaagcaaaaaggcgcaaacagatgattgcttgtttgcctcacctctttgacatgatttatttcctgtttcaatctattaaacgttctgtcatgacgaaagaggagctcatgcacagagtaatttcaagccatttagagataacggacaaaagtgaagttgaacagcaactcctattactgcaagaattggctcctgaatggatttatgagaaaccagcatctaatggaactcttctcttacttgttagcaagatatcaaatcctgacacaattcgttcaagactagcagaagccaattgagagaaacnagaaactagtgatttgtactttattttaccaaatagacgtgtaaggaataacaatttagaaaaaagtgtaaataataagtgttttgtctaattaatacagtaccacttgcgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="98503" stop="100615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98803" g_stop="99240" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99241" i_stop="99393" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99394" g_stop="99595" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="640" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99596" i_stop="99692" i_length="97">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99693" g_stop="99783" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="731" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99784" i_stop="100133" i_length="350">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100134" g_stop="100315" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="912" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E732151" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98803" e_stop="99240"/>
          <exon e_start="99394" e_stop="99595"/>
          <exon e_start="99693" e_stop="99783"/>
          <exon e_start="100134" e_stop="100315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGGCTCGTTTCTCCAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCGGTAAGAAAACACACACTTGCATATCAATCTTCCTTGATAAAATTTTTTAAGATCAACTACATTGGATTCATTTAAATTTTCATTCCTCAACGTAGCTGAACTACAAAATATTCTGTTTTATGCAACAAGAAGCTAACTTCCATGATTTCACAGATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAAGTAAGCCACTAAGCCCGGTTGACAATTTTCAGAAGCCTGTAGTCCTTTTGAGATTCATTGGAGCTTCTTTCTGAATCTTGATGTTTCATTACTACAGGTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACTGTAAGCTACAATTCTCAAATTCCAATCATTTGTTTGCTTTGTCCAAAGCAATGATGAGTTTAGAAGATCTATATTTGCCAGTTTCTTGATCAATTTTCGTCGTTAGAATAGATTAGAGTCTCACATTGGTCGGGAAATGGAGTGATAATCTCTAGCATTTAAGGTTGGGTTAGACCCAAGAGTCATATTTCACGTGGTATTAGAACCAAGGGTCGTGTTATAGCTTAAGCCCATAGAGGTATTACAGTTCCGTTCCATATTGATTGAGAAATTAGCTAGTGCTTACTCTTTCCGCGTGAGCTAACTTTTAGAATTAAGCTACATCTAATATCTATATCTTTATTTTGCAGTGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAATAGACGTGTAAGGAATAACAATTTAGAAAAAAGTTGTAAATAATAAGTGTTTTGTCTAATTAATACAGTACCACTTGCGTTGC</genome_strand>
        <mrna_strand>CTCGGGCTCGTTTCTCTAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCG.........................................................................................................................................................ATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA.................................................................................................GTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACT..............................................................................................................................................................................................................................................................................................................................................................TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACNAGAAACTAGTGATTTGTACTTTATTTTACCAAATAGACGTGTAAGGAATAACAATTTAGAAAAAAG-TGTAAATAATAAGTGTTTTGTCTAATTAATACAGTACCACTTGCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726695" ref_strand="+" ref_description="SGN-E726695 [LA12CC05]">
      <seq>tctggctcgactctccaacttcaataccccattactgtcccaagttccaccatgaataaaacagtatcatgttcgtgatgctcctaaattatctctaaaacataactagcatcatgaaatgctcagcacgaggggttgttttggctagttcaccatgccatccacctgctcttcctatgattgaagccaaaaagggagaagatggttctacatccgctctcagcaacccctatgctcgaacctcataagagatgttacatgagtccagatgatccagctgaatcacctataaaactagctagacacccgtcaactagaagggcggtgctcttctgaactcctgtgaagagtgcaaatgctgatgatatagtctgcgacaatggaacgttttcaactgataatgatattcttgacattcttcctgacaatcttctgctatcgataggacaaaaggagagtgaagcactatcggatcaaaatccagccatatcccaagcaaaaaggcgcgaacagatgattgcttgtttgcctcacctctttgacatgatttatttcctgtttcaatctattaaacgttctgtcatgacgatagaggagctcatgcacagagtaatttcaagccatttagagataacggacaaaagtgaagttgaacagacaactcctattactgcaagaattggctcctgaatggatttatgagagaccagcatctaatggaactcttctcttacttgttagcaagatatcaaatcctgacacaattcgttcaagactagcagaagccaattgagagaaacaagaaactagtgatttgtactttattttaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="+" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="98504" stop="100533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98804" g_stop="99240" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99241" i_stop="99393" i_length="153">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99394" g_stop="99595" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="643" r_length="202" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99596" i_stop="99692" i_length="97">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99693" g_stop="99783" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="735" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99784" i_stop="100133" i_length="350">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100134" g_stop="100233" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="835" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="+" ref_id="SGN-E726695" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98804" e_stop="99240"/>
          <exon e_start="99394" e_stop="99595"/>
          <exon e_start="99693" e_stop="99783"/>
          <exon e_start="100134" e_stop="100233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGCTCGTTTCTCCAGCTTCAATACCCC-TTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTC-TGATGCTCCTAAGTTATCTCTAAAACA-AACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTC-CAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCGGTAAGAAAACACACACTTGCATATCAATCTTCCTTGATAAAATTTTTTAAGATCAACTACATTGGATTCATTTAAATTTTCATTCCTCAACGTAGCTGAACTACAAAATATTCTGTTTTATGCAACAAGAAGCTAACTTCCATGATTTCACAGATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAAGTAAGCCACTAAGCCCGGTTGACAATTTTCAGAAGCCTGTAGTCCTTTTGAGATTCATTGGAGCTTCTTTCTGAATCTTGATGTTTCATTACTACAGGTGAAGTTGAACAG-CAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACTGTAAGCTACAATTCTCAAATTCCAATCATTTGTTTGCTTTGTCCAAAGCAATGATGAGTTTAGAAGATCTATATTTGCCAGTTTCTTGATCAATTTTCGTCGTTAGAATAGATTAGAGTCTCACATTGGTCGGGAAATGGAGTGATAATCTCTAGCATTTAAGGTTGGGTTAGACCCAAGAGTCATATTTCACGTGGTATTAGAACCAAGGGTCGTGTTATAGCTTAAGCCCATAGAGGTATTACAGTTCCGTTCCATATTGATTGAGAAATTAGCTAGTGCTTACTCTTTCCGCGTGAGCTAACTTTTAGAATTAAGCTACATCTAATATCTATATCTTTATTTTGCAGTGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</genome_strand>
        <mrna_strand>TCTGGCTCGACTCTCCAACTTCAATACCCCATTACTGTCCCAAGTTCCACCATGAATAAAACAGTATCATGTTCGTGATGCTCCTAAATTATCTCTAAAACATAACTAGCATCATGAAATGCTCAGCACGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCTCAGCAACCCCTATGCTCGAACCTCATAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCTATAAAACTAGCTAGACACCCGTCAACTAGAAGGGCGGTGCTCTTCTGAACTCCTGTGAAGAGTGCAAATGCTGATGATATAGTCTGCGACAATGGAACGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGACAATCTTCTGCTATCG.........................................................................................................................................................ATAGGACAAAAGGAGAGTGAAGCACTATCGGATCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCGAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGATAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA.................................................................................................GTGAAGTTGAACAGACAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAGACCAGCATCTAATGGAACTCTTCTCTTACT..............................................................................................................................................................................................................................................................................................................................................................TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733774" ref_strand="+" ref_description="SGN-E733774 [LB10DF07]">
      <seq>ggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattattttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="102994" stop="100119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102694" g_stop="102522" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="266" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="398" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100821" g_stop="100420" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="800" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="812"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E733774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102694" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>GGAAAAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371634" ref_strand="+" ref_description="SGN-E371634 [TUS-29-C4](-)">
      <seq>gacctgcctatgctcaactgaagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattattttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="102952" stop="100119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102652" g_stop="102522" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="224" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="356" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100821" g_stop="100420" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="758" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E371634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102652" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>GACCTGCCTATGCTCAACTGAAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398565" ref_strand="+" ref_description="SGN-E398565 [TUS-24-L22](-)">
      <seq>ggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagttaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttcggaatattgtgagagaagagcaataatttggtgttcaatttgcatattgtcttcatatctcataacaatagagaataaaagaagagaaaacagactgttttgtactttggattgtatctggaaaattgttacttaaagtttgtaccatctattatttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="102842" stop="100119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102542" g_stop="102522" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="114" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="246" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100821" g_stop="100420" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="648" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="659"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E398565" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102542" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</genome_strand>
        <mrna_strand>GGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGTTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395698" ref_strand="+" ref_description="SGN-E395698 [TUS-17-K22](-)">
      <seq>aatggacgactgttgccaaactcataaggttgaaagctgtactaccccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctttcttgataccggggtagtagtattcccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcatatcaattatttctgaatattgtgagagaagagcaataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="101246" stop="100254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100946" g_stop="100919" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100821" g_stop="100554" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="296" r_length="268" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E395698" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100946" e_stop="100919"/>
          <exon e_start="100821" e_stop="100554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATT</genome_strand>
        <mrna_strand>AATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACCCCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTTTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCTGAATATTGTGAGAGAAGAGCAATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710300" ref_strand="+" ref_description="SGN-E710300 [FA55AA09]">
      <seq>cttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattccccggactatcatcgacccctccaccattctggaaagaaatgggaagtagtatctgccacatgatagagttagcataatcaattatttcggaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104940" stop="100274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104640" g_stop="104563" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103406" g_stop="103303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="182" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="348" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="441" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="573" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100821" g_stop="100574" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="823" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E710300" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104640" e_stop="104563"/>
          <exon e_start="103406" e_stop="103303"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATT-CCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCAT-ATCAATTATTTCGGAATATT</genome_strand>
        <mrna_strand>CTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATAATCAATTATTTCGGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246728" ref_strand="+" ref_description="SGN-E246728 [cLEF-45-H5]">
      <seq>ccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagtagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctcttgataccggggtagtagtattcccggactatcatcgacccctncaccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104936" stop="100339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104636" g_stop="104563" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="102688" i_length="1875">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="240" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="333" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="465" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100821" g_stop="100639" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="648" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E246728" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104636" e_stop="104563"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCT</genome_strand>
        <mrna_strand>CCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTNCACCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371635" ref_strand="+" ref_description="SGN-E371635 [TUS-29-C4]">
      <seq>aaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcataaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaactattgtgttgttgagtgtacctgttaaatctctcgatgaactctcgttctctccctgatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104956" stop="100392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104656" g_stop="104563" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103406" g_stop="103303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="198" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="364" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="589" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100821" g_stop="100692" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="719" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E371635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104656" e_stop="104563"/>
          <exon e_start="103406" e_stop="103303"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTC</genome_strand>
        <mrna_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395699" ref_strand="+" ref_description="SGN-E395699 [TUS-17-K22]">
      <seq>cctttctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagtatatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcttaaggttgaaagctgtactacaccagaaggacaatgagaagagactcaaagtaactatggatgtaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104932" stop="100456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104637" g_stop="104563" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="102688" i_length="1875">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="241" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="334" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101050" g_stop="100919" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="466" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100821" g_stop="100756" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E395699" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104637" e_stop="104563"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100919"/>
          <exon e_start="100821" e_stop="100756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAGGTTAATTATCATAATTCATTTCTAGTCTTACGAATCCTGTTCTATTTACCCTTGTTATGTACAACGTCATTTTACATTCAGAATTCGTATTCCTCAGGTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAAC</genome_strand>
        <mrna_strand>CCTTTCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCTTAAG.................................................................................................GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280534" ref_strand="+" ref_description="SGN-E280534 [cLER-1-A20]">
      <seq>aaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104956" stop="100622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104656" g_stop="104563" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103406" g_stop="103303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="198" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="364" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101050" g_stop="100922" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="586" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E280534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104656" e_stop="104563"/>
          <exon e_start="103406" e_stop="103303"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCAT</genome_strand>
        <mrna_strand>AAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271596" ref_strand="+" ref_description="SGN-E271596 [cLEM-23-B10]">
      <seq>agagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatgtcctgtatgtttaggaactggtttacctaataataaaggtcttcttaggcggccagacgcaaggaagttacttgacaagatgtataatggacgactgttgccaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104954" stop="100625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104654" g_stop="104563" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103406" g_stop="103303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="196" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="362" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="455" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101050" g_stop="100925" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="581" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E271596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104654" e_stop="104563"/>
          <exon e_start="103406" e_stop="103303"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="100925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACT</genome_strand>
        <mrna_strand>AGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247521" ref_strand="+" ref_description="SGN-E247521 [cLEF-42-A6]">
      <seq>cacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcagaagatgagagttgtacttctgcatcttccgagcatttacgggaacatgtagaggaaaagagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaagacgtttatgagttcactgagtgccccaattgttacggacgagggaaactagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104935" stop="100732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104635" g_stop="104563" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103406" g_stop="103303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="177" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="343" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101431" g_stop="101339" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="436" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101050" g_stop="101032" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="455" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E247521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104635" e_stop="104563"/>
          <exon e_start="103406" e_stop="103303"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101339"/>
          <exon e_start="101050" e_stop="101032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACGGTATGTTATTATAGAACCTTTGAATCCATATAAGGAAGAAAAGAAGTCAAAATGTAGATCATAGTCACAAAACCAAAATTTGAATATTGCATAAGACGTAGGGTTTTCTTTATCGAGTCATTAAACAAGAACCGCTCCATTTTCATTTCGATACATCCCAACAAGACATACCACCGATAGTCTTTCCCTTTGATAATCGTTTGCTTTATGATCTTTGCTTTCAGAATGATTCATTTTATCTTATGTTGAATACTAACATGATGACATTTTTTCTTATGGGATGAACAGGACGAGGGAAACTAGTATG</genome_strand>
        <mrna_strand>CACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG................................................................................................................................................................................................................................................................................................GACGAGGGAAACTAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396198" ref_strand="+" ref_description="SGN-E396198 [TUS-24-L22]">
      <seq>cccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagtagatctcaaacatcagtctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaatacttttatgagttcactgagtgccccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104937" stop="101045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104637" g_stop="104563" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="102688" i_length="1875">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="241" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101431" g_stop="101345" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E396198" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104637" e_stop="104563"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATT</genome_strand>
        <mrna_strand>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAATACTTTTATGAGTTCACTGAGTGCCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297206" ref_strand="+" ref_description="SGN-E297206 [cLET-29-H2]">
      <seq>aaaaaagagagagagatggcttcccacctctcattttctactccttcagctctatggggttcatacttaaaccccaaatcttcctctttaagtcagttgaatatgaagaagagggtagggtctcatgtgaactgcagctcataagatgagagttgtacttctgcatcttccgagcatttacgggaacatgttgaggaaaagagatctcaaacatcactctcacggagatggtgtctgacctgcctatgctcaactggagctctgataactgcttctggaaatccaatttctgaaccaagagcaattgccttagatggaaatgaaagtcctggctgtcggaattgtgggggtagtggcgctataatttgtgatatgtgtggtggtacaggaaaatggaaagctctaaacagaaaacgagctaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="104959" stop="101074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104659" g_stop="104563" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103406" g_stop="103303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="201" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615">
            <donor d_prob="0.441" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102687" g_stop="102522" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="367" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101431" g_stop="101374" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="425" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E297206" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104659" e_stop="104563"/>
          <exon e_start="103406" e_stop="103303"/>
          <exon e_start="102687" e_stop="102522"/>
          <exon e_start="101431" e_stop="101374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGTGTAAGATGATACATCAATCTTTTGTTTAATTTTCTTGATTTTTTTTTTAAATTTAGGTCAGATTTTTGTAGTTTCCTTGATTCTACTCTGCATAAAGATAAAATCTTGAAAGTGGGATTTTTTTTTATTTGTTTAAGGTCATTTTGGTTGAAAGTTTATGTTTTTGGGGAATTGAATTCTTTTTATGATGTGGAAGCAAGTTTAAGTTAATATCACACAATTGAGATAGTAATTGGGACATACTCATTTGTTTATTTGCTGTTATGTTCCTTGTTAATGTATTTTTACGGTTTTTCGGAAATAATCTTTTACCTCAACAAGGTAATGTACACGCTATCCACTCCAGACCTCACTTGTGAGAATACGCTGTAGTCGTTGGTTATGGGCTCTTGTTATGGCTATTGTTTTTTTTGATGAAGTTGATATTTTTGAAGACCCTTGTTGATATTTGTAGTTTCAAAATTCAAATGTCATTCTAAAAATCTGAACTTTTTGTTTCTTAACTTACTGTTATAGAGTGTATATGTAGAAGTTATGAGATAGAGAGGAAATAGAATGAGAAATATGGTTTGCCATCTCTTATTTCTCATTCCTTTAGCTCTATGGGGTTCATAGTTAAAACTCCAAATGTTTTTCTTTATATTAGTGTGAGTTGATTAGAAGCTGGATTTTGCAGTAGATTTTGGTTAAGGTCATTTTGTATTGTACTCTTCTTGGAATATTTGTTTGTTTGGTTTTTCGTTCAAGTTTTGTAGTTTTTCATGATCCTACTTCAGTATACAGATGAAATCTCTCAAAGTGGAACTTAAGTTTGTATGGTGTTTGGCCAGGTTTCGCACACCTAGACTAATTCATAGATAACTCTATCCACCAAGGCTAGAACAGATGGGAAGACTCACCCAGTGTTTTTCTTTTGGCTTTGTTGGGATTTGAACTTTATACCACTCCACGAACAGACCATTTAGTAAACAGTATACATAGTTGAAATGCAATTGGGATAGATTTATTTGTTTGTTTTTTTGGACCGGTTGACTTCATTCTTGATTGTTCTTTCCGATTGGGATTTTGTTTATAAGTTAATGTTTTTGAAGACCCTTTTTGAGCGTCTGAAAAATATGTTGGTACTCGGGAGTAATTACTTTTCTGGAAATGACAGTGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAGGTTGGTAACTTCTTACAGCTTCTTGATGGGATTGCTAAACAACAACAACAACATACCTGGTAAAATCTACTAAGTGGGGTCTGGGGAGTCTAGAGTGTCGCTAAGACCTTATGATTACCTCGTGCAGGTAGAGAGATTGTTTGCGAAAGACCCTCGGCTTTGATGCCTCCATCAAACCCAAGTAAAAGAAGAAGAAGAGACAACAGTTGTAAAGTCTACTCGAAACAATAACAATAGCAAAATAATGTGATACTCGAAACACAATAAACAACATATGACAAGAACTACAAGGGTAAAACTAGTACTACGATAGCCACTAACAAGCCTAAGCCTTTGTAAGACTAGACAACACTCTACCCCTACTAACCTTTTACCTTAATACGGGACTCCACTCCTTCCTATGTAGAGTCAATTGATGACTTTGGAACTTCTAGTTTTTATTTTTGTAAATAATGTCTTTTGAAAATGTTTGAGAAAATTATAATGAGGAAAATCTTGTTCGACCCTCCAAAAAGTAATGTATTGTATACAGTAAAATTGGCAATGTGCTATTTTTGTCTACAACTATCATCAGATTATATTTATTGATTTGTCTGCTGTTGCTTTTTGGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTTGTAAGTGTATATTGATTCCTGCTTTACTTGCTTCATCCCACTAATCATATTACATTTAGTAACATGTTCTAAGAGAACTTTTCTTATGCTTCTCCATGACTATAAACAAGTTCTCGAAGATTTTCATATTGAAACAGCAGCCCGTATAACCAAATTCAGTACCCTTATAAAATTATAGGGTCCAGTATATGCTAAATCTTTGAATAATAACAGAAAGGCACCTACATAGTTAACAAAACTAACACACACATAAATACATGCAACTCAATATGTAATGACTTGCCGAAAGTTTTTATTGTGTCATTAGTACTGTATCGTTGAGAATTTAAGGTTCTAATGTTTTATCCAAAAAGTTCTGCTTTTTAAGTGTTGAACATGGAAACAAGTACCTCAATGAACTTTTCTTTATCGAAGTTAACCTAGCAAACTTGAGAATTGTTGAGCATCAAAACAACACACCTTAAGAAACTTGAGAATTATTGATCATCAGAACAACTCACCTGAACAAACTGTTTTGGCAACTTTGCCAAAGAACAGGTTTAGAAATTGAAAACTTGAGCTAATACAAACCAAAAAGAGAGAGAAGTCTGAATAAGAATATCTAAATTATTTCCTTATAGTTAGTTTCCTTCACATACAGTGGTGACATGATGGTATTCATGATTGTTTAGCATACAAGTTTCTTGTGCTTCTATCTTTTTCTCTTCTAAGTGGACGCAATGTAGTGATTGAAGGGATCTTTGACTACTTAAGTTCTCTTTTCTGATAAAGGTTACACCCTTTTGCTACTCCAATATCTTTTTTTTTCTGCTTGATATCTCTTGTTTTACAATTCTGTTCAAAACTTGTCTTCCTCCAATCTCTTCCTCACATTATATCGTAAAACAGATAATTTGTGAGCTATTGATGTCTGTTAAATCTTTTGTCATACATTTTCCAAGTAACCGAAGGACAAAACGAAGCTAGTTCTTTACTATCCTGGACATGAATCAAAGAATTATCCCAATTTTGATGAAGCACTATAATTTTGTATGCATAACTTATGTTGGTGCTCTATCTACTTTAAGACTTTCATCTGTTTTTTATATAGGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGA</genome_strand>
        <mrna_strand>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCATAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTTGAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCAAACATCACTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203210" ref_strand="+" ref_description="SGN-E203210 [cLEB-3-N2](-)">
      <seq>tatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacatgttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaatttctggggaaagttttaatgttatctttacctatcgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="106763" stop="105475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106463" g_stop="106335" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106334" i_stop="106141" i_length="194">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106140" g_stop="105776" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="494" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="511"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E203210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106463" e_stop="106335"/>
          <exon e_start="106140" e_stop="105776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</genome_strand>
        <mrna_strand>TATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552938" ref_strand="+" ref_description="SGN-E552938 [cTSB-5-I14]">
      <seq>gtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttcctttatcctagtgagggtattcataagaggtgggataatggttatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacattttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="107443" stop="105516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107143" g_stop="107072" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107071" i_stop="106524" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106523" g_stop="106335" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="261" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106334" i_stop="106141" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106140" g_stop="105817" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="585" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="596"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E552938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107143" e_stop="107072"/>
          <exon e_start="106523" e_stop="106335"/>
          <exon e_start="106140" e_stop="105817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</genome_strand>
        <mrna_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATTTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556294" ref_strand="+" ref_description="SGN-E556294 [cTSD-3-A18]">
      <seq>gtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttcctttatcctagtgagggtattcataagaggtgggataatggttatcgtattacggcaacagctgctacgccagaccaagctgctcttatcctgagtgtacctcgccgaagacctggtgatgagactcaagaaactctgcgaacatctcagtttcccagcacacattttaaggaaaaatggggaaagaatctgtatctttcttgtctatgctatggacgcactgtatcttaaaacaaatcgtgaccaaattgttgtaacccgacatttggatcttatatcttgttgtttcattgtccaagtgtaaatggatggtggtggtggtaagaagttagatgtgtcttagaatgttatgctataggagaacttttagtttgtcttaaaattatgaaaatgttgtagctgctctgtgtaacagctttctgcttatgatgttgttgttatcctactagtacaggaacaattgttcttgctgcaataattgtttcgtgtactcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="107443" stop="105516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107143" g_stop="107072" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107071" i_stop="106524" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106523" g_stop="106335" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="261" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106334" i_stop="106141" i_length="194">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106140" g_stop="105817" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="585" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="597"/>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E556294" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107143" e_stop="107072"/>
          <exon e_start="106523" e_stop="106335"/>
          <exon e_start="106140" e_stop="105817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAGGTAGTGTTTGTGAAATTGTTCTCTACTTTGCCTAATTGTTGTGTTGGCTATTGCATAGGAGCGAGGGTTCTATCCTGTGTGCACCCTAAGGGTAGCGACTAAGGGTTTCCCTCGACAAATACACTCTATTCACATCATTTTTTATTATATGAGCGAGTTGTTGACTTGTGTTCTATCCTTGATTCTTTGTGCAGGAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</genome_strand>
        <mrna_strand>GTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATTTTAAG..................................................................................................................................................................................................GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321070" ref_strand="+" ref_description="SGN-E321070 [cTOB-13-E1]">
      <seq>tcaaaaggctattcaagttggccaaaagcgggggagactaactttaaatgaggaagaagagcagcctcagaagaaaattcgaatcggtgttcctgcgacgcaatggatttcaatatataatgccagaaagccgatgaaacagaggtaccattacaatgtagcagacacaagattggcacagcatgtggagaaagggtctgtggatggtttgtctataagttgtgtagcatcatgttctagcttatgggctatcatcatggatgctggaacgaacttcactagccaagtttatgagctgtcacctttcttcttacacaaggagtggattatggagcaatgggagaaaaactattatattagttctcttgctggtggcataaatggagcctctttagtagtaatgtcaaaaggcacacagttcactcaacagtcttataaagtcagtgagtcatttcccttcaagtggataagcaagaaatggaaagaagggttccatgtgacctccatggcaactgctaacactaggtgggctgttgttatgtcacgcaattcaggcttcagtgatcaggtggtagagcttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="109557" stop="106206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109344" g_stop="109338" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109337" i_stop="109254" i_length="84">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109253" g_stop="109117" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="144" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109116" i_stop="108476" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108475" g_stop="108301" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="319" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108300" i_stop="108213" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108212" g_stop="108122" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="410" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108121" i_stop="107230" i_length="892">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107229" g_stop="107072" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="568" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107071" i_stop="106524" i_length="548">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106523" g_stop="106506" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="586" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E321070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109344" e_stop="109338"/>
          <exon e_start="109253" e_stop="109117"/>
          <exon e_start="108475" e_stop="108301"/>
          <exon e_start="108212" e_stop="108122"/>
          <exon e_start="107229" e_stop="107072"/>
          <exon e_start="106523" e_stop="106506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGTAAGTATTCTAAATTTTATACGAGTCAACAGTAGGTAAGCTTTATTACACTACTATATGGGGCTTATGGTGTAATCATTATAGGCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAGGTACATATATCATGTCACGTGATTTGTCTTTTATGGCAGTTAATAAGTATTTGTCTGTGGTGAACATTAGCTCTGGATTCTTCACCTTAAATGGGGATGTGGTTTGTTGGTTTGGGGGGGGGGGGGTAATAACACAAGTGGGGTTTGGAGAGGTAAGATATATGCAGAATGGTACTCCTGGAAGTTTTCAACTTCTTGGATTTTGGGAGCAGGTAAAATTAAGCTTCTGCTGGTAATATATTTTGAACTTTTTGGAGGCTGTATATGGTAGTCAGAGAAACAAATATCTGCCAAATTTGGTATATTAGTCAATACTCATTTACTTATTTTATTAAGAAGAATACATGGAGTGTCCTTTGTCTTCTGATGGCATAATCACTAAAGATTTTTCTGGAAGATCTGTTTTATCTTCATCTATGCTCCACAGTATTAGGAGATGATCCTTTTCTATTCGCTCCATAGTGTTGATTGGATAGGTATAGAGGATTGGTTGGCTTTTGTAGAGACCTTGTTCTGCTGTGAGATACAGCCACTTTTTACGCCTAATTATTATGAATATTATTACTTGATAGTTGATACAAAAGAAAAAATCATCTAATGTACCCCAACTTTCCCTAATATTAACATCATGACTTCATTAGGTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAGGTAATTAGAAGTTCCATGTAGTCTTCATGTGGTGTGCAGCTTTTTAGCTTCAGATGTGTTTATCTAATCTTCCAAATGTGTGTTACAGGAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAGGTGGGTTTCTTTTAACATGCTGTAGGTTAATTCTTTCTACTTGTTTTAATCTTTTACCCACTTTTAGAGAATACAGTTAGATATCTTTTCTTGCTTATCAGTCAGCAAAAGTTACAATTAACTAGCATGTTATGCTTGGTGCATATGGTTTAGTAGGTCACGACATAATTTTGATTGGGCTATTTGTATTACTGCAAGATATGCTTTCTGTTGGTTTCTTTTTTTGTTGGTCCCTCTGAACTTCATCTTGCATTGAAAACAAGCTCTACTGCTGGATCTGTATTTTCCTTCTTCGATTTTATGCATCCAACTATAACATGTATCTCTCTCTCTCTCGTGTTGTAAAATGGCAAGTTTTTATTATTACTCATAAACAGCCCTAAGAATGTGCTGGATTTATATACATTGTGCCAAAAGTGCGAAGACAAAAGTATAGCCCTATCTAAATGTATAATATATGGATTATTGGAGCTCTTAAGCTGTAGTTGCTAGGGTAGTTGTCTCCTGATGTCGTTCTGTGATGATAGTTTCTTATATTTGTAAGGCGAATCAGAAGGTGTTAGCTTTTTATCAGTTTTTATGATGTACGAGTCTAAAAATTGTTCAGTCAGATGGTGTTATATGATGATGGGTTACCTCTTCAGATATTTTTTTGGAGCTGGTAAATGTTGGGTTACGTCTTGTATATGCCAGTTTAACACTAGTTGGTGATATATGGAATAGAAGTTTGATATTTGAGTTGCATTTCGTCATCTAATTGTTGTGGAGGGTATTTTTTCCTATGCAAAGGCAAATGCAGATTGTTTTGCCAGCTTTGAGCTTTTCTGGATGCAGATCTAGTTCCTGGACTATCTTTATTTTTGTATATAATACTTGTGTCTATTTTTTGCAGGCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAGGTTGTTTGTCTCCCCTCTTTAACACTCTCATACAATATTTAATCTGGTGTTAGTGTTAATACGGTATCTCATTTCCTTCTGCCCCCTCCTCCCTTTGTGGTGATAACCTGGAAAAATTATCGGATAAATTTCCCCATGAAGCGTAGGCTTAAGGATCTAAAAGGGTAGTCACAGTAAGATTTTGTCTGCGAGGAAATGAAGTTGGTTGGTTTAATGACCTTCTGTCCTAAAATTTACTTAATAAGTCCATACCTCGTTTTGTTACACTTGATTTATAATTTCTTTTTTCTTACTAAAAGAAAGTCCATTACTCTTTATTTTTCTTGAAATCATGTAGTTTGTTTATGTTACGGCCCTACCTGAACAGCATCTGTTCTATTGGCTTGTAATACGATATCCTTGAGTTCTGAGGAAACATGAAAGTAGGATACCAAGTCTAGTTGATGAAGCATGGTCATGTGACTAGAGCGTGATTCACAGCCTCCTAGTTGTGTGGGGCAGTAGTTTCTGTCTCATCTGCTAACATGGAGATTTTTAATGTTTTATAGGTGGTAGAGCTTGATTTC</genome_strand>
        <mrna_strand>TCAAAAG....................................................................................GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG........................................................................................GAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGAGCTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699816" ref_strand="+" ref_description="SGN-E699816 [FA11BB10]">
      <seq>agcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcagggctatcagggtgataacaaatcatttttagtctgtaaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagagaatttcttgatacagtaattaacatgaagtttgatgaagaaccgaaatattcaaagttaatctctttatttgggagcttgcttggagctgatcctgctataaggccgatcaacacagatggtgctcaaaaggctattcaagttggccaaaagcgggggagactaactttaaatgaggaagaagagcagcctcagaagaaaattcgaatcggtgttcctgcgacgcaatggatttcaatatataatgccagaaagccgatgaaacagaggtaccattacaatgtagcagacacaagattggcacagcatgtggagaaagggtctgtggatggtttgtctataagttgtgtagcatcatgttctagcttatgggctatcatcatggatgctggaacgaacttcactagccaagtttatgagctgtcacctttcttcttacacaaggagtggattatggagcaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="110108" stop="107891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109888" g_stop="109870" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109869" i_stop="109794" i_length="76">
            <donor d_prob="0.895" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109793" g_stop="109664" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="149" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109663" i_stop="109557" i_length="107">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109556" g_stop="109338" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="368" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109337" i_stop="109254" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109253" g_stop="109117" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="505" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109116" i_stop="108476" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108475" g_stop="108301" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="680" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108300" i_stop="108213" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108212" g_stop="108191" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="702" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E699816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109888" e_stop="109870"/>
          <exon e_start="109793" e_stop="109664"/>
          <exon e_start="109556" e_stop="109338"/>
          <exon e_start="109253" e_stop="109117"/>
          <exon e_start="108475" e_stop="108301"/>
          <exon e_start="108212" e_stop="108191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAGGTAAGTATTCTAAATTTTATACGAGTCAACAGTAGGTAAGCTTTATTACACTACTATATGGGGCTTATGGTGTAATCATTATAGGCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAGGTACATATATCATGTCACGTGATTTGTCTTTTATGGCAGTTAATAAGTATTTGTCTGTGGTGAACATTAGCTCTGGATTCTTCACCTTAAATGGGGATGTGGTTTGTTGGTTTGGGGGGGGGGGGGTAATAACACAAGTGGGGTTTGGAGAGGTAAGATATATGCAGAATGGTACTCCTGGAAGTTTTCAACTTCTTGGATTTTGGGAGCAGGTAAAATTAAGCTTCTGCTGGTAATATATTTTGAACTTTTTGGAGGCTGTATATGGTAGTCAGAGAAACAAATATCTGCCAAATTTGGTATATTAGTCAATACTCATTTACTTATTTTATTAAGAAGAATACATGGAGTGTCCTTTGTCTTCTGATGGCATAATCACTAAAGATTTTTCTGGAAGATCTGTTTTATCTTCATCTATGCTCCACAGTATTAGGAGATGATCCTTTTCTATTCGCTCCATAGTGTTGATTGGATAGGTATAGAGGATTGGTTGGCTTTTGTAGAGACCTTGTTCTGCTGTGAGATACAGCCACTTTTTACGCCTAATTATTATGAATATTATTACTTGATAGTTGATACAAAAGAAAAAATCATCTAATGTACCCCAACTTTCCCTAATATTAACATCATGACTTCATTAGGTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAGGTAATTAGAAGTTCCATGTAGTCTTCATGTGGTGTGCAGCTTTTTAGCTTCAGATGTGTTTATCTAATCTTCCAAATGTGTGTTACAGGAGTGGATTATGGAGCAATGGG</genome_strand>
        <mrna_strand>AGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG....................................................................................GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG........................................................................................GAGTGGATTATGGAGCAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334474" ref_strand="+" ref_description="SGN-E334474 [cTOD-23-G12]">
      <seq>cactgaagtttgagcatcgaaacagcaaaggctgtagctatggccctccatatgagtggcaggtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagagtattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtcagcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcgaaaggttatgttcatggagatgtgaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcaggnctatcagggtgataacaaatcatttttagtctgtaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagagatttcttgatacagtaattaacatgagtttgatgaagaaccgaaatattcaaagttaatctctttatttgggagcttgcttggagctgatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="112363" stop="109072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112063" g_stop="111994" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111993" i_stop="111906" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111905" g_stop="111836" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="140" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111835" i_stop="110809" i_length="1027">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110808" g_stop="110753" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="196" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110752" i_stop="110309" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110308" g_stop="110237" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="268" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110236" i_stop="110109" i_length="128">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110108" g_stop="110014" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="363" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110013" i_stop="109937" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109936" g_stop="109870" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="430" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109869" i_stop="109794" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109793" g_stop="109664" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="560" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="109663" i_stop="109557" i_length="107">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="109556" g_stop="109372" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="742" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E334474" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112063" e_stop="111994"/>
          <exon e_start="111905" e_stop="111836"/>
          <exon e_start="110808" e_stop="110753"/>
          <exon e_start="110308" e_stop="110237"/>
          <exon e_start="110108" e_stop="110014"/>
          <exon e_start="109936" e_stop="109870"/>
          <exon e_start="109793" e_stop="109664"/>
          <exon e_start="109556" e_stop="109372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGC</genome_strand>
        <mrna_strand>CACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG................................................................................................................................TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGNCTATCAG...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGT-AAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAG-ATTTCTTGATACAGTAATTAACATG-AGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317366" ref_strand="+" ref_description="SGN-E317366 [cTOA-28-C20]">
      <seq>cgtgctagtggtcccttggctttggaggtcgcactgaagtttgagcatcgaaacagcaaaggctgtagctatggccctccatatgagtggcaggtttacaatactcttggaggcagccatggagtgcctagagtgcattataaaggacgggcaggagagtattatgtgatggttatggacatgctaggccctagcttatgggatgtatggaattcctctgggcaatcaatgtcagcagaaatggtggcttgtattgcagttgagtcattgtcgattttggaaaagctgcatgcgaaaggttatgttcatggagatgtgaagccagaaaactttttacttggccagccatcaacaccacaagagaagaagttgttcctagttgacttgggactggccacaaagtggaaagacacttcaaaagggcagcatgtcggatatgatcagcgtcctgacacgttcagagggactgttcgctatgcaagtgcacatgctcacttgggaaggactgccagtagaagagatgatttggaatcacttgcatatacactaatttttcttcatcgaggcaggctcccatggcaggnctatcanggtgataacaaatcatttttagtctgtaaaaaaagatggcaacatctccagagatgctttgttgcttctgccctgcaccttttagaagatttcttgatacagtaattaacatgaagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0053J01-WM1Sa/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0053J01.1" temp_strand="-" temp_description="C01HBa0053J01.1  AC238509.2 htgs_phase:2 submitted_to_sgn_as:AC238509 Solanum lycopersicum strain Heinz 1706 clone hba-53j1, WORKING DRAFT SEQUENCE, 2 ordered pieces.">
        <position start="112560" stop="109133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112260" g_stop="112234" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112233" i_stop="112068" i_length="166">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112067" g_stop="111994" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="101" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111993" i_stop="111906" i_length="88">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111905" g_stop="111836" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="171" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111835" i_stop="110809" i_length="1027">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110808" g_stop="110753" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="227" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110752" i_stop="110309" i_length="444">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110308" g_stop="110237" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="299" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110236" i_stop="110109" i_length="128">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110108" g_stop="110014" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="394" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110013" i_stop="109937" i_length="77">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109936" g_stop="109870" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="461" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="109869" i_stop="109794" i_length="76">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="109793" g_stop="109664" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="591" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="109663" i_stop="109557" i_length="107">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="109556" g_stop="109433" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="714" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0053J01.1" gen_strand="-" ref_id="SGN-E317366" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0053J01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112260" e_stop="112234"/>
          <exon e_start="112067" e_stop="111994"/>
          <exon e_start="111905" e_stop="111836"/>
          <exon e_start="110808" e_stop="110753"/>
          <exon e_start="110308" e_stop="110237"/>
          <exon e_start="110108" e_stop="110014"/>
          <exon e_start="109936" e_stop="109870"/>
          <exon e_start="109793" e_stop="109664"/>
          <exon e_start="109556" e_stop="109433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTAGTGGTCCCTTGGCTTTGGAGGTAAAGTGGTTGCATATGAATAATCTATCCACTTTTTCCCGTTATCCTTTTCGACAAGGCTAATTTATCTGTCTACTAATCTTAGCGTCTTCTCGATGCAATTGTTAATGAAATCTTATTTTACGTGATAAAAGAAAACCATATTGATTTTCTTTTATGTCTCTAGGTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAAGTAAGGATTGATATCTTTTAAAGTTACTGTGTACACTTGTACTGAAATGAGATTTGCAGGACTGAAAGTTCCTTTTTTTTTGGTTCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATGGTATGTTCACCAAGACAGATTTGCATTGATTATAGTAATGGAGGATAAAAAAATTGAGTTGTGGATATTTATTTTTGGGAGAAACATCAAGATAATGAGTTGAGACAGTGAATGTGACCTCTTTTAGCATTCTAATTTCAGCATCCAAAGAGAAATTAAATAAAATATATTTAATAGGCAGGCAGCGTGATATATTTCAAGGTTTTAAGAGGGTCTCATATCTGCTCTTACCAAGCTAACAAATAGCTTTAGTGTACAATGGAGGTCTTTATTTTTTATTCACTTATTTAGCCAGGTCCTGTTCTAATTGAATGAGTGGAACTCTTTTGGTAGTTGCTTACTTTCTTTTTGGTATGATTGTCTTTTGAGGGGACTGATTTTGTTTTGCTATTACACTTCCCCTGGATCTCAGAAGTCGTCTTTGATATTAGCTGCCGGGCTTTGGTCTAGTGTTAAGAACGTTACTTGTGATGTGTGGGTTAGGAACACGTCACATGTTCAAACCTTGCTGCAAATGAAAGCCTAGTACTCCTATTTAAGTGGAGAACATTGGAGGGGTGAGCCATCATCCACAGAGTGTGAAACCATGTACCACTGGTCCTGGTGGATTTCTCGACTACAAAAAAAGTGACCATTTTACTTCAAATTGTTAGTCCACTCGTCTTACAAAAATTGTCACTCTTTCCTGTTCAATTTAAGAAAAAAAGGGACCTTTGTCAAGCATATTCTCCTAATTGTTTAGTAAAGAGTCTGCTAGAATCATGTCCGTTTTCTTGCTGTTGAAGATTGATTGATAGAATAAAGATATAATTTTTTGAAATGGGATAAAATTTTGGGACATACACAGAAAGTTAAGGAGAGATAAATATTTCTGATCCGATGAGTTACCAGCAAAGTGGTTGTTAATGATTAGGACCTCTTTTCAATGAACGGATTCTGCTCTGTATGTTTTCTGGACTAGTGAATGCTGTTGTATATAATAATAAAATGTGTGTGCGTATTGACCTTATTATTATCATGTATGCAGGTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATCGTAAGTAGCTAATGCTAGTATTAAACATACTTACTGAACAAAGACTTCTTCAATTGTCAGACCTCCAGAAGTGGCTGCTTTTTCCCCACTCTTTCAGTTATTTTTGATTATTATGATAAATTGATAATAGAAATACCGTCGTTCAATAAGTCAACCTGCTCAAGGATGGCATTCTCAAATTGAAAAATGGTCTAAAATAAGTCACCAATTATTTGACATGAACTATGTAGTAATTCTAATTTCAAAGTTAAATGGTCCTTGATATCCATCCTTAAACACTGGTGATAAGGATCTGCTCGCAATTGTGTATAGTGTAGATTCTGATTTTCTGGGGTTTATTTCTAAGAACAGCAAAAACATCGTTGATAAACTTATTGAGTTTTGGTTTACCATATATCAATGTGTCAGTTGAATATGGTCTGCTCATAAATCCTACTTATGCAGAATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGGGTACGGATTCACTCTTTTCCTGCAATCAGTTTGGTTCTTTTTATTTGCTGAATGTTGAACTACTTTTAATTTGTAGTCATTGTACTTCTCTTTTGAATTCTTCGTAGTGACTTTTTTGTTGATCTCAGTTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGGGTAAGAGAGCTTAGTGTAGGTTTCTGTGTTTGTTAATTTGATAACCCTTTTCCTAATTATTTATCTACCAATTACAGCCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAGGTGTGGTGATGTTCTGCTATCCTTTGCTTAGTTTTCTTATATCTACCCAATACTAACTTCTGTCTATCAATTTCAGAGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAGGTTTCTGCTTTACCTGCTTCTTTCCAGTCTTTACACTGCATACACTTTGTTTCAGTCATTGAACAACCCCCACGTCTCTTGTTACAATTTATATTTCTGGATTGCAGGGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATG</genome_strand>
        <mrna_strand>CGTGCTAGTGGTCCCTTGGCTTTGGAG......................................................................................................................................................................GTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA........................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG................................................................................................................................TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG.............................................................................CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG............................................................................AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGNCTATCAN...........................................................................................................GGTGATAACAAATCATTTTTAGTCTGT-AAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAAGATTTCTTGATACAGTAATTAACATGAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>147</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2875" PGL_stop="2510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2875" e_stop="2510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="2875" e_stop="2510" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2875" stop="2510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCTGGATCTAGTACAATTTCAATTGTGACTAATTATGCAAATAATCAACACAAGTTCTTTGATGATTTTGTTTGTTCAATGATTAAATTGGGAAATATTAGTCCATTAACAGGTACTAATGGAGAGATTAGGAAAGATTGCAAGAGGATTAATTAATGTAATCCTATTTAATTCTATGTATGTATGTATGTTATTTATGTAAATGTAATGTGTGATGAAACTCCCGTAAAGATAGGAGTAAAGTTTACGTACGTTTTATTCTGGTTGTTTGTCGTAATGTGTGGTGAAATAACAATGTTCCTAAATAAGACAATGTTATTTGCTAAAATAAAAATTCCAATAATGATGTTTTACCATCTATTC</gDNA_template>
            <first_frame> T  S  G  S  S  T  I  S  I  V  T  N  Y  A  N  N  Q  H  K  F  F  D  D  F  V  C  S  M  I  K  L  G  N  I  S  P  L  T  G  T  N  G  E  I  R  K  D  C  K  R  I  N  *  C  N  P  I  *  F  Y  V  C  M  Y  V  I  Y  V  N  V  M  C  D  E  T  P  V  K  I  G  V  K  F  T  Y  V  L  F  W  L  F  V  V  M  C  G  E  I  T  M  F  L  N  K  T  M  L  F  A  K  I  K  I  P  I  M  M  F  Y  H  L  F </first_frame>
            <second_frame>  H  L  D  L  V  Q  F  Q  L  *  L  I  M  Q  I  I  N  T  S  S  L  M  I  L  F  V  Q  *  L  N  W  E  I  L  V  H  *  Q  V  L  M  E  R  L  G  K  I  A  R  G  L  I  N  V  I  L  F  N  S  M  Y  V  C  M  L  F  M  *  M  *  C  V  M  K  L  P  *  R  *  E  *  S  L  R  T  F  Y  S  G  C  L  S  *  C  V  V  K  *  Q  C  S  *  I  R  Q  C  Y  L  L  K  *  K  F  Q  *  *  C  F  T  I  Y   </second_frame>
            <third_frame>   I  W  I  *  Y  N  F  N  C  D  *  L  C  K  *  S  T  Q  V  L  *  *  F  C  L  F  N  D  *  I  G  K  Y  *  S  I  N  R  Y  *  W  R  D  *  E  R  L  Q  E  D  *  L  M  *  S  Y  L  I  L  C  M  Y  V  C  Y  L  C  K  C  N  V  *  *  N  S  R  K  D  R  S  K  V  Y  V  R  F  I  L  V  V  C  R  N  V  W  *  N  N  N  V  P  K  *  D  N  V  I  C  *  N  K  N  S  N  N  D  V  L  P  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2701" stop="2510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYVCMYVIYVNVMCDETPVKIGVKFTYVLFWLFVVMCGEITMFLNKTMLFAKIKIPIMMFYHLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5325" PGL_stop="3024"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5325" e_stop="5066"/>
            <exon e_start="4531" e_stop="4343"/>
            <exon e_start="3894" e_stop="3729"/>
            <exon e_start="3129" e_stop="3024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5325" e_stop="5066" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.947">
            <gDNA_intron_boundary i_start="5065" i_stop="4532" i_length="534"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4531" e_stop="4343" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4342" i_stop="3895" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3894" e_stop="3729" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3728" i_stop="3130" i_length="599"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3129" e_stop="3024" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5325" stop="5066"/>
              <exon start="4531" stop="4343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5318" stop="5066"/>
              <exon start="4531" stop="4404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5214" stop="5066"/>
              <exon start="4531" stop="4343"/>
              <exon start="3894" stop="3729"/>
              <exon start="3129" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5213" stop="5066"/>
              <exon start="4531" stop="4343"/>
              <exon start="3894" stop="3729"/>
              <exon start="3129" stop="3113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5213" stop="5066"/>
              <exon start="4531" stop="4343"/>
              <exon start="3894" stop="3801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5195" stop="5066"/>
              <exon start="4531" stop="4343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTAATTAAAAAAACAAACAAAATTGTTTCAATTATTAATTATGTCTTTTTTAAGATTTATTTTAGCAATTTTCTTCTTGGTTTCAATTAATTTTGGAGTATCAAATGCTCATTATAAATTAACTCCTACATTTTATGATTGCACTTGCCCAAATGTCATACACATTGTACGTGATGTTATGGAGCAAATTCAACGTAGAGATGTTCGAGCTGGGGCCAAAATTATTCGTCTTCATTTTCATGATTGCTTCGTTAAC : GGTTGTGATGGATCAATTTTACTTAATAATGCAACTGGAATTATAAGTGAAAAAGATGCAAATCCAAATGTTGGTGCTGGAGGATTTGATATTGTTGATGAAATTAAAACCGCATTGGAAAATGAGTGCCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCTCTTGCATCTGAAATCGGAGTTGTTTTG : GCTGGAGGTCCATCATGGCAAGTTCCTTTAGGGAGAAGAGACAGCTTAACAGCAAACAGAAGTGGAGCTAATAGTGATATCCCAAGCCCTACTGAAACCCTTGCTGTTATGATACCACAATTCACTAGAAAGGGAATGGATTTAACTGATCTTGTTGCTCTATCAG : GGGCACATACATTTGGAAGAGCAAGATGTAGAACATTCAATCAAAGACTTTTCAACTTTAGTGGAAGTGGTAGACCTGATCCAACCATAGACTCTAATTATTTAAA</gDNA_template>
            <first_frame> R  F  N  *  K  N  K  Q  N  C  F  N  Y  *  L  C  L  F  *  D  L  F  *  Q  F  S  S  W  F  Q  L  I  L  E  Y  Q  M  L  I  I  N  *  L  L  H  F  M  I  A  L  A  Q  M  S  Y  T  L  Y  V  M  L  W  S  K  F  N  V  E  M  F  E  L  G  P  K  L  F  V  F  I  F  M  I  A  S  L  T :   V  V  M  D  Q  F  Y  L  I  M  Q  L  E  L  *  V  K  K  M  Q  I  Q  M  L  V  L  E  D  L  I  L  L  M  K  L  K  P  H  W  K  M  S  A  L  A  L  F  L  V  L  I  F  *  L  L  H  L  K  S  E  L  F  W :   L  E  V  H  H  G  K  F  L  *  G  E  E  T  A  *  Q  Q  T  E  V  E  L  I  V  I  S  Q  A  L  L  K  P  L  L  L  *  Y  H  N  S  L  E  R  E  W  I  *  L  I  L  L  L  Y  Q  :  G  H  I  H  L  E  E  Q  D  V  E  H  S  I  K  D  F  S  T  L  V  E  V  V  D  L  I  Q  P  *  T  L  I  I  *  </first_frame>
            <second_frame>  D  L  I  K  K  T  N  K  I  V  S  I  I  N  Y  V  F  F  K  I  Y  F  S  N  F  L  L  G  F  N  *  F  W  S  I  K  C  S  L  *  I  N  S  Y  I  L  *  L  H  L  P  K  C  H  T  H  C  T  *  C  Y  G  A  N  S  T  *  R  C  S  S  W  G  Q  N  Y  S  S  S  F  S  *  L  L  R  *   : R  L  *  W  I  N  F  T  *  *  C  N  W  N  Y  K  *  K  R  C  K  S  K  C  W  C  W  R  I  *  Y  C  *  *  N  *  N  R  I  G  K  *  V  P  W  R  C  F  L  C  *  Y  F  S  S  C  I  *  N  R  S  C  F   : G  W  R  S  I  M  A  S  S  F  R  E  K  R  Q  L  N  S  K  Q  K  W  S  *  *  *  Y  P  K  P  Y  *  N  P  C  C  Y  D  T  T  I  H  *  K  G  N  G  F  N  *  S  C  C  S  I  R :   G  T  Y  I  W  K  S  K  M  *  N  I  Q  S  K  T  F  Q  L  *  W  K  W  *  T  *  S  N  H  R  L  *  L  F  K </second_frame>
            <third_frame>   I  *  L  K  K  Q  T  K  L  F  Q  L  L  I  M  S  F  L  R  F  I  L  A  I  F  F  L  V  S  I  N  F  G  V  S  N  A  H  Y  K  L  T  P  T  F  Y  D  C  T  C  P  N  V  I  H  I  V  R  D  V  M  E  Q  I  Q  R  R  D  V  R  A  G  A  K  I  I  R  L  H  F  H  D  C  F  V  N  :  G  C  D  G  S  I  L  L  N  N  A  T  G  I  I  S  E  K  D  A  N  P  N  V  G  A  G  G  F  D  I  V  D  E  I  K  T  A  L  E  N  E  C  P  G  V  V  S  C  A  D  I  L  A  L  A  S  E  I  G  V  V  L  :  A  G  G  P  S  W  Q  V  P  L  G  R  R  D  S  L  T  A  N  R  S  G  A  N  S  D  I  P  S  P  T  E  T  L  A  V  M  I  P  Q  F  T  R  K  G  M  D  L  T  D  L  V  A  L  S   : G  A  H  T  F  G  R  A  R  C  R  T  F  N  Q  R  L  F  N  F  S  G  S  G  R  P  D  P  T  I  D  S  N  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5317" stop="5066"/>
                    <exon start="4531" stop="4343"/>
                    <exon start="3894" stop="3729"/>
                    <exon start="3129" stop="3026"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKQTKLFQLLIMSFLRFILAIFFLVSINFGVSNAHYKLTPTFYDCTCPNVIHIVRDVMEQIQRRDVRAGAKIIRLHFHDCFVNGCDGSILLNNATGIISEKDANPNVGAGGFDIVDEIKTALENECPGVVSCADILALASEIGVVLAGGPSWQVPLGRRDSLTANRSGANSDIPSPTETLAVMIPQFTRKGMDLTDLVALSGAHTFGRARCRTFNQRLFNFSGSGRPDPTIDSNYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15704" PGL_stop="9072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15704" e_stop="15284"/>
            <exon e_start="13984" e_stop="13835"/>
            <exon e_start="13141" e_stop="11966"/>
            <exon e_start="11128" e_stop="10982"/>
            <exon e_start="9888" e_stop="9072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.949" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.626" acc_prob="0.807" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="15704" e_stop="15284" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15283" i_stop="13985" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13984" e_stop="13835" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13834" i_stop="13142" i_length="693"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="13141" e_stop="11966" e_length="1176"/>
          </exon>
          <intron i_serial="3" don_prob="0.626" acc_prob="0.807">
            <gDNA_intron_boundary i_start="11965" i_stop="11129" i_length="837"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11128" e_stop="10982" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10981" i_stop="9889" i_length="1093"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9888" e_stop="9072" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15704" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="12949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15653" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="13062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15647" stop="15284"/>
              <exon start="13984" stop="13835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15594" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="13105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15552" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="11966"/>
              <exon start="11128" stop="10982"/>
              <exon start="9888" stop="9383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15499" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="12843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="12711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15495" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="12636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15284"/>
              <exon start="13984" stop="13835"/>
              <exon start="13141" stop="12649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12891" stop="12446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12839" stop="12621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12428" stop="11966"/>
              <exon start="11128" stop="11002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12262" stop="11966"/>
              <exon start="11128" stop="10982"/>
              <exon start="9888" stop="9400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12082" stop="11966"/>
              <exon start="11128" stop="10982"/>
              <exon start="9888" stop="9635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12067" stop="11966"/>
              <exon start="11128" stop="10982"/>
              <exon start="9888" stop="9522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11042" stop="10982"/>
              <exon start="9888" stop="9174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262884" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11023" stop="10982"/>
              <exon start="9888" stop="9190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11023" stop="10982"/>
              <exon start="9888" stop="9190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9876" stop="9170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9698" stop="9072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTCGATGCATCCATCACACATTAGATAGAATTCTTTTCAGGAAAGGCCTCAAATTAAGATTAATCTAAGCCAAAGCGTCAACATCTCTTCAGCAAAGCCAACAACTTTTTTTTTTAGCTTTTTCTCACATACCCCATTGCCAATAATTGACTTTGGACTCTTTTTTTCTTCATTTTGAACCTAAAAATCCAATCTTGGAGACACCCATTGAAGGAAAAATCAAGATTTTGAAGTTTTTAGATAAGGGGTGTATAAGAAATCATGGGAAAGACAACAAGGAAACTTGAAGTTGTTTCTCCTGTTCCAGCAGATATAGATATTGCTAACTCTGTTGAACCTCTTCATATTTCTGAGATTGCTCAAGAACTCAATCTTAGCTCTCAGCATTATGATTTGTATGGGAAGTATAAAGCCAAG : GTGCTCTTATCCGTGCTTGATGAGGTTGGAGGAAGTGAGGATGGGTATTATGTGGTGGTTGGAGGAATAACTCCAACCCCTCTTGGAGAGGGGAAGTCTACTACCACAGTTGGTCTTTGCCAGGCTTTGGGAGCTTTCCTTGATAAAAAG : GTTGTGACATGTGTCCGCCAACCATCACAAGGACCAACATTCGGAATCAAGGGTGGTGCTGCAGGAGGTGGTTACAGTCAAGTTATACCAATGGATGAGTTCAATCTCCACCTAACTGGAGATATTCATGCAATAACAGCAGCAAATAACCTTCTGGCTGCTGCGATTGATACACGAATCTTCCATGAATCTACGCAGTCTGACAAGGCTCTCTTTAACAGGTTATGCCCACCAAATAAAGAAGGTAAACGGAAGTTCTGTGACATTATGTTTAGGCGTTTGAAGAAACTTGGTATTGACAAGACGGCCCCCGAAGACCTTACTCCTGAAGAGAGCAGTAAATTTGCTAGGCTAGATATAGATCCTGCTTCCGTCACATGGAGAAGAGTCATGGATGTCAATGATAGGTTTTTGAGAAAAATTACCATCGGTCAGGGACCTGAAGAGAAGGGGATGGTCCGGGAGACAGCATTTGACATTTCAGTTGCTAGTGAAATAATGGCAGTTCTAGCCCTCACGACATCACTAGCTGATATGCGAGAGAGGCTGGGGAAAATGGTAGTCGGGAATAGCAAGGCCGGTGATCCAGTTACAGCTGATGATCTTGGGGTTGGAGGCGCTTTGACTGTTTTGATGAAAGATGCCATTAATCCTACTCTTATGCAGACTCTTGAGGGCACCCCTGTTCTTGTTCATGCCGGTCCGTTTGCAAATATTGCTCATGGAAATTCATCTATTGTTGCTGACAAGATTGCATTAAAGCTCGTAGGACCTGGTGGCTTTGTGGTCACAGAGGCTGGCTTTGGTTCTGATATTGGGACAGAGAAGTTTATGAACATCAAATGTCGATATAGTGGCTTGAAACCACAGTGCGCTATTATTGTGGCCACAGTAAGAGCCCTTAAAATGCATGGTGGAGGACCTCAAGTCACAGCTGGAAAGCCTCTCGACAAGGCCTATGTAACTGAGAATCTCGGACTAGTGGAAGCTGGTTGTGTGAATCTTGCTAGGCATATTTCAAATACAAAAGCTTATGGTGTAAATGTTGTGGTTGCCGTCAATGCATTCTCAACTGATACTGAAGCAGAACTAAATGCAGTTAAAAATGCTGCATTAGCTGCAGGAGCATTTGATTCAGTAATTTGTACTCATCATGCCCATGGTGGCAAAGGAGCG : GTGGACCTCGGAATCGCAGTTCAGAAGGCCTGTGAGAATGCAAAACAGTCACTAAAATTCCTGTACCCGCTGGATATAGGTATCAAAGATAAAATAGAGGCAATAGCAAAATCATATGGTGCTGATGGAGTAGAGTACTCTGAAGAG : GCTGAGAAACAGATTGAGATGTATACCAAACAAGGATTTACAAATCTGCCAATTTGCATGGCGAAAACACAATATTCATTTTCACATGATGCCGGGAAGAAGGGCGCTCCTAGTGGATTCATCCTGCCCATCAGGGACGTTAGAGCAAGCATTGGCGCAGGATTCATTTATCCTCTTGTTGGAACAATGAGCACAATGCCTGGTTTGCCTACGAGGCCTTGTTTCTACGAGATTGACATCGACACATCTACTGGAAAGGTAATCGGTCTTTCTTGAACATCCAAAAAAAAGTGTGGTGTGGTTGTTTTACTGTGTTTTGGCAGAAGTGAAGAGTTTGTCAAGTTCTAGACTTCCTTCTCCTCCTCTACAGTGCTCAGCTAATAACGGTACTGCCCCGAACCACTTCTGTGTTTCTTATTGTTGTCGTAGAATCAGTGTAAACGAACACCTGCAGTTCTACTGCCCGACGTTGATTGAATAAACATGAATGTGAGTGATCATGATGAGTTGTTAAGACTATTCGAGGTTCGTTTAAAAGGGCCTTGCCTCTCTTTACCATCGTTTTCGCGAATCGTACACAATTCTTGTTGTCTCTACTACATTTTTCTTAGATAAGTGCTGTATAATTAGTGTAGTATATGTTGTGAATCTTGCACAAAGATTACAAATTTGTGTGCAAAAGAATAATTCTTGTAATAAGTGGTCATGTTTTGCAATGTTGTGTGTATTTCTGCCAAATGTGGTTATCCTATTAACTTTTGGCTATTTGAATCAACATCATGGCTTAGAGCAAGCCCAATAAATAAAGAAAAAAAAA</gDNA_template>
            <first_frame> K  V  R  C  I  H  H  T  L  D  R  I  L  F  R  K  G  L  K  L  R  L  I  *  A  K  A  S  T  S  L  Q  Q  S  Q  Q  L  F  F  L  A  F  S  H  I  P  H  C  Q  *  L  T  L  D  S  F  F  L  H  F  E  P  K  N  P  I  L  E  T  P  I  E  G  K  I  K  I  L  K  F  L  D  K  G  C  I  R  N  H  G  K  D  N  K  E  T  *  S  C  F  S  C  S  S  R  Y  R  Y  C  *  L  C  *  T  S  S  Y  F  *  D  C  S  R  T  Q  S  *  L  S  A  L  *  F  V  W  E  V  *  S  Q   : G  A  L  I  R  A  *  *  G  W  R  K  *  G  W  V  L  C  G  G  W  R  N  N  S  N  P  S  W  R  G  E  V  Y  Y  H  S  W  S  L  P  G  F  G  S  F  P  *  *  K   : G  C  D  M  C  P  P  T  I  T  R  T  N  I  R  N  Q  G  W  C  C  R  R  W  L  Q  S  S  Y  T  N  G  *  V  Q  S  P  P  N  W  R  Y  S  C  N  N  S  S  K  *  P  S  G  C  C  D  *  Y  T  N  L  P  *  I  Y  A  V  *  Q  G  S  L  *  Q  V  M  P  T  K  *  R  R  *  T  E  V  L  *  H  Y  V  *  A  F  E  E  T  W  Y  *  Q  D  G  P  R  R  P  Y  S  *  R  E  Q  *  I  C  *  A  R  Y  R  S  C  F  R  H  M  E  K  S  H  G  C  Q  *  *  V  F  E  K  N  Y  H  R  S  G  T  *  R  E  G  D  G  P  G  D  S  I  *  H  F  S  C  *  *  N  N  G  S  S  S  P  H  D  I  T  S  *  Y  A  R  E  A  G  E  N  G  S  R  E  *  Q  G  R  *  S  S  Y  S  *  *  S  W  G  W  R  R  F  D  C  F  D  E  R  C  H  *  S  Y  S  Y  A  D  S  *  G  H  P  C  S  C  S  C  R  S  V  C  K  Y  C  S  W  K  F  I  Y  C  C  *  Q  D  C  I  K  A  R  R  T  W  W  L  C  G  H  R  G  W  L  W  F  *  Y  W  D  R  E  V  Y  E  H  Q  M  S  I  *  W  L  E  T  T  V  R  Y  Y  C  G  H  S  K  S  P  *  N  A  W  W  R  T  S  S  H  S  W  K  A  S  R  Q  G  L  C  N  *  E  S  R  T  S  G  S  W  L  C  E  S  C  *  A  Y  F  K  Y  K  S  L  W  C  K  C  C  G  C  R  Q  C  I  L  N  *  Y  *  S  R  T  K  C  S  *  K  C  C  I  S  C  R  S  I  *  F  S  N  L  Y  S  S  C  P  W  W  Q  R  S   : G  G  P  R  N  R  S  S  E  G  L  *  E  C  K  T  V  T  K  I  P  V  P  A  G  Y  R  Y  Q  R  *  N  R  G  N  S  K  I  I  W  C  *  W  S  R  V  L  *  R   : G  *  E  T  D  *  D  V  Y  Q  T  R  I  Y  K  S  A  N  L  H  G  E  N  T  I  F  I  F  T  *  C  R  E  E  G  R  S  *  W  I  H  P  A  H  Q  G  R  *  S  K  H  W  R  R  I  H  L  S  S  C  W  N  N  E  H  N  A  W  F  A  Y  E  A  L  F  L  R  D  *  H  R  H  I  Y  W  K  G  N  R  S  F  L  N  I  Q  K  K  V  W  C  G  C  F  T  V  F  W  Q  K  *  R  V  C  Q  V  L  D  F  L  L  L  L  Y  S  A  Q  L  I  T  V  L  P  R  T  T  S  V  F  L  I  V  V  V  E  S  V  *  T  N  T  C  S  S  T  A  R  R  *  L  N  K  H  E  C  E  *  S  *  *  V  V  K  T  I  R  G  S  F  K  R  A  L  P  L  F  T  I  V  F  A  N  R  T  Q  F  L  L  S  L  L  H  F  S  *  I  S  A  V  *  L  V  *  Y  M  L  *  I  L  H  K  D  Y  K  F  V  C  K  R  I  I  L  V  I  S  G  H  V  L  Q  C  C  V  Y  F  C  Q  M  W  L  S  Y  *  L  L  A  I  *  I  N  I  M  A  *  S  K  P  N  K  *  R  K  K   </first_frame>
            <second_frame>  K  F  D  A  S  I  T  H  *  I  E  F  F  S  G  K  A  S  N  *  D  *  S  K  P  K  R  Q  H  L  F  S  K  A  N  N  F  F  F  *  L  F  L  T  Y  P  I  A  N  N  *  L  W  T  L  F  F  F  I  L  N  L  K  I  Q  S  W  R  H  P  L  K  E  K  S  R  F  *  S  F  *  I  R  G  V  *  E  I  M  G  K  T  T  R  K  L  E  V  V  S  P  V  P  A  D  I  D  I  A  N  S  V  E  P  L  H  I  S  E  I  A  Q  E  L  N  L  S  S  Q  H  Y  D  L  Y  G  K  Y  K  A  K  :  V  L  L  S  V  L  D  E  V  G  G  S  E  D  G  Y  Y  V  V  V  G  G  I  T  P  T  P  L  G  E  G  K  S  T  T  T  V  G  L  C  Q  A  L  G  A  F  L  D  K  K  :  V  V  T  C  V  R  Q  P  S  Q  G  P  T  F  G  I  K  G  G  A  A  G  G  G  Y  S  Q  V  I  P  M  D  E  F  N  L  H  L  T  G  D  I  H  A  I  T  A  A  N  N  L  L  A  A  A  I  D  T  R  I  F  H  E  S  T  Q  S  D  K  A  L  F  N  R  L  C  P  P  N  K  E  G  K  R  K  F  C  D  I  M  F  R  R  L  K  K  L  G  I  D  K  T  A  P  E  D  L  T  P  E  E  S  S  K  F  A  R  L  D  I  D  P  A  S  V  T  W  R  R  V  M  D  V  N  D  R  F  L  R  K  I  T  I  G  Q  G  P  E  E  K  G  M  V  R  E  T  A  F  D  I  S  V  A  S  E  I  M  A  V  L  A  L  T  T  S  L  A  D  M  R  E  R  L  G  K  M  V  V  G  N  S  K  A  G  D  P  V  T  A  D  D  L  G  V  G  G  A  L  T  V  L  M  K  D  A  I  N  P  T  L  M  Q  T  L  E  G  T  P  V  L  V  H  A  G  P  F  A  N  I  A  H  G  N  S  S  I  V  A  D  K  I  A  L  K  L  V  G  P  G  G  F  V  V  T  E  A  G  F  G  S  D  I  G  T  E  K  F  M  N  I  K  C  R  Y  S  G  L  K  P  Q  C  A  I  I  V  A  T  V  R  A  L  K  M  H  G  G  G  P  Q  V  T  A  G  K  P  L  D  K  A  Y  V  T  E  N  L  G  L  V  E  A  G  C  V  N  L  A  R  H  I  S  N  T  K  A  Y  G  V  N  V  V  V  A  V  N  A  F  S  T  D  T  E  A  E  L  N  A  V  K  N  A  A  L  A  A  G  A  F  D  S  V  I  C  T  H  H  A  H  G  G  K  G  A  :  V  D  L  G  I  A  V  Q  K  A  C  E  N  A  K  Q  S  L  K  F  L  Y  P  L  D  I  G  I  K  D  K  I  E  A  I  A  K  S  Y  G  A  D  G  V  E  Y  S  E  E  :  A  E  K  Q  I  E  M  Y  T  K  Q  G  F  T  N  L  P  I  C  M  A  K  T  Q  Y  S  F  S  H  D  A  G  K  K  G  A  P  S  G  F  I  L  P  I  R  D  V  R  A  S  I  G  A  G  F  I  Y  P  L  V  G  T  M  S  T  M  P  G  L  P  T  R  P  C  F  Y  E  I  D  I  D  T  S  T  G  K  V  I  G  L  S  *  T  S  K  K  K  C  G  V  V  V  L  L  C  F  G  R  S  E  E  F  V  K  F  *  T  S  F  S  S  S  T  V  L  S  *  *  R  Y  C  P  E  P  L  L  C  F  L  L  L  S  *  N  Q  C  K  R  T  P  A  V  L  L  P  D  V  D  *  I  N  M  N  V  S  D  H  D  E  L  L  R  L  F  E  V  R  L  K  G  P  C  L  S  L  P  S  F  S  R  I  V  H  N  S  C  C  L  Y  Y  I  F  L  R  *  V  L  Y  N  *  C  S  I  C  C  E  S  C  T  K  I  T  N  L  C  A  K  E  *  F  L  *  *  V  V  M  F  C  N  V  V  C  I  S  A  K  C  G  Y  P  I  N  F  W  L  F  E  S  T  S  W  L  R  A  S  P  I  N  K  E  K  K  </second_frame>
            <third_frame>   S  S  M  H  P  S  H  I  R  *  N  S  F  Q  E  R  P  Q  I  K  I  N  L  S  Q  S  V  N  I  S  S  A  K  P  T  T  F  F  F  S  F  F  S  H  T  P  L  P  I  I  D  F  G  L  F  F  S  S  F  *  T  *  K  S  N  L  G  D  T  H  *  R  K  N  Q  D  F  E  V  F  R  *  G  V  Y  K  K  S  W  E  R  Q  Q  G  N  L  K  L  F  L  L  F  Q  Q  I  *  I  L  L  T  L  L  N  L  F  I  F  L  R  L  L  K  N  S  I  L  A  L  S  I  M  I  C  M  G  S  I  K  P  R :   C  S  Y  P  C  L  M  R  L  E  E  V  R  M  G  I  M  W  W  L  E  E  *  L  Q  P  L  L  E  R  G  S  L  L  P  Q  L  V  F  A  R  L  W  E  L  S  L  I  K  R :   L  *  H  V  S  A  N  H  H  K  D  Q  H  S  E  S  R  V  V  L  Q  E  V  V  T  V  K  L  Y  Q  W  M  S  S  I  S  T  *  L  E  I  F  M  Q  *  Q  Q  Q  I  T  F  W  L  L  R  L  I  H  E  S  S  M  N  L  R  S  L  T  R  L  S  L  T  G  Y  A  H  Q  I  K  K  V  N  G  S  S  V  T  L  C  L  G  V  *  R  N  L  V  L  T  R  R  P  P  K  T  L  L  L  K  R  A  V  N  L  L  G  *  I  *  I  L  L  P  S  H  G  E  E  S  W  M  S  M  I  G  F  *  E  K  L  P  S  V  R  D  L  K  R  R  G  W  S  G  R  Q  H  L  T  F  Q  L  L  V  K  *  W  Q  F  *  P  S  R  H  H  *  L  I  C  E  R  G  W  G  K  W  *  S  G  I  A  R  P  V  I  Q  L  Q  L  M  I  L  G  L  E  A  L  *  L  F  *  *  K  M  P  L  I  L  L  L  C  R  L  L  R  A  P  L  F  L  F  M  P  V  R  L  Q  I  L  L  M  E  I  H  L  L  L  L  T  R  L  H  *  S  S  *  D  L  V  A  L  W  S  Q  R  L  A  L  V  L  I  L  G  Q  R  S  L  *  T  S  N  V  D  I  V  A  *  N  H  S  A  L  L  L  W  P  Q  *  E  P  L  K  C  M  V  E  D  L  K  S  Q  L  E  S  L  S  T  R  P  M  *  L  R  I  S  D  *  W  K  L  V  V  *  I  L  L  G  I  F  Q  I  Q  K  L  M  V  *  M  L  W  L  P  S  M  H  S  Q  L  I  L  K  Q  N  *  M  Q  L  K  M  L  H  *  L  Q  E  H  L  I  Q  *  F  V  L  I  M  P  M  V  A  K  E  R :   W  T  S  E  S  Q  F  R  R  P  V  R  M  Q  N  S  H  *  N  S  C  T  R  W  I  *  V  S  K  I  K  *  R  Q  *  Q  N  H  M  V  L  M  E  *  S  T  L  K  R :   L  R  N  R  L  R  C  I  P  N  K  D  L  Q  I  C  Q  F  A  W  R  K  H  N  I  H  F  H  M  M  P  G  R  R  A  L  L  V  D  S  S  C  P  S  G  T  L  E  Q  A  L  A  Q  D  S  F  I  L  L  L  E  Q  *  A  Q  C  L  V  C  L  R  G  L  V  S  T  R  L  T  S  T  H  L  L  E  R  *  S  V  F  L  E  H  P  K  K  S  V  V  W  L  F  Y  C  V  L  A  E  V  K  S  L  S  S  S  R  L  P  S  P  P  L  Q  C  S  A  N  N  G  T  A  P  N  H  F  C  V  S  Y  C  C  R  R  I  S  V  N  E  H  L  Q  F  Y  C  P  T  L  I  E  *  T  *  M  *  V  I  M  M  S  C  *  D  Y  S  R  F  V  *  K  G  L  A  S  L  Y  H  R  F  R  E  S  Y  T  I  L  V  V  S  T  T  F  F  L  D  K  C  C  I  I  S  V  V  Y  V  V  N  L  A  Q  R  L  Q  I  C  V  Q  K  N  N  S  C  N  K  W  S  C  F  A  M  L  C  V  F  L  P  N  V  V  I  L  L  T  F  G  Y  L  N  Q  H  H  G  L  E  Q  A  Q  *  I  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15445" stop="15284"/>
                    <exon start="13984" stop="13835"/>
                    <exon start="13141" stop="11966"/>
                    <exon start="11128" stop="10982"/>
                    <exon start="9888" stop="9613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1908</number_coding_nucleotides>
                  <number_encoded_amino_acids>636</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIMGKTTRKLEVVSPVPADIDIANSVEPLHISEIAQELNLSSQHYDLYGKYKAKVLLSVLDEVGGSEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCVRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRKFCDIMFRRLKKLGIDKTAPEDLTPEESSKFARLDIDPASVTWRRVMDVNDRFLRKITIGQGPEEKGMVRETAFDISVASEIMAVLALTTSLADMRERLGKMVVGNSKAGDPVTADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGSDIGTEKFMNIKCRYSGLKPQCAIIVATVRALKMHGGGPQVTAGKPLDKAYVTENLGLVEAGCVNLARHISNTKAYGVNVVVAVNAFSTDTEAELNAVKNAALAAGAFDSVICTHHAHGGKGAVDLGIAVQKACENAKQSLKFLYPLDIGIKDKIEAIAKSYGADGVEYSEEAEKQIEMYTKQGFTNLPICMAKTQYSFSHDAGKKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDIDTSTGKVIGLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9353" stop="9087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGLASLYHRFRESYTILVVSTTFFLDKCCIISVVYVVNLAQRLQICVQKNNSCNKWSCFAMLCVFLPNVVILLTFGYLNQHHGLEQAQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9626" stop="9408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVFLEHPKKSVVWLFYCVLAEVKSLSSSRLPSPPLQCSANNGTAPNHFCVSYCCRRISVNEHLQFYCPTLIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9176" PGL_stop="9636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9176" e_stop="9636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="9176" e_stop="9636" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9176" stop="9636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACATGACCACTTATTACAAGAATTATTCTTTTGCACACAAATTTGTAATCTTTGTGCAAGATTCACAACATATACTACACTAATTATACAGCACTTATCTAAGAAAAATGTAGTAGAGACAACAAGAATTGTGTACGATTCGCGAAAACGATGGTAAAGAGAGGCAAGGCCCTTTTAAACGAACCTCGAATAGTCTTAACAACTCATCATGATCACTCACATTCATGTTTATTCAATCAACGTCGGGCAGTAGAACTGCAGGTGTTCGTTTACACTGATTCTACGACAACAATAAGAAACACAGAAGTGGTTCGGGGCAGTACCGTTATTAGCTGAGCACTGTAGAGGAGGAGAAGGAAGTCTAGAACTTGACAAACTCTTCACTTCTGCCAAAACACAGTAAAACAACCACACCACACTTTTTTTTGGATGTTCAAGAAAGACCGATTACCTTTCC</gDNA_template>
            <first_frame> Q  N  M  T  T  Y  Y  K  N  Y  S  F  A  H  K  F  V  I  F  V  Q  D  S  Q  H  I  L  H  *  L  Y  S  T  Y  L  R  K  M  *  *  R  Q  Q  E  L  C  T  I  R  E  N  D  G  K  E  R  Q  G  P  F  K  R  T  S  N  S  L  N  N  S  S  *  S  L  T  F  M  F  I  Q  S  T  S  G  S  R  T  A  G  V  R  L  H  *  F  Y  D  N  N  K  K  H  R  S  G  S  G  Q  Y  R  Y  *  L  S  T  V  E  E  E  K  E  V  *  N  L  T  N  S  S  L  L  P  K  H  S  K  T  T  T  P  H  F  F  L  D  V  Q  E  R  P  I  T  F   </first_frame>
            <second_frame>  K  T  *  P  L  I  T  R  I  I  L  L  H  T  N  L  *  S  L  C  K  I  H  N  I  Y  Y  T  N  Y  T  A  L  I  *  E  K  C  S  R  D  N  K  N  C  V  R  F  A  K  T  M  V  K  R  G  K  A  L  L  N  E  P  R  I  V  L  T  T  H  H  D  H  S  H  S  C  L  F  N  Q  R  R  A  V  E  L  Q  V  F  V  Y  T  D  S  T  T  T  I  R  N  T  E  V  V  R  G  S  T  V  I  S  *  A  L  *  R  R  R  R  K  S  R  T  *  Q  T  L  H  F  C  Q  N  T  V  K  Q  P  H  H  T  F  F  W  M  F  K  K  D  R  L  P  F  </second_frame>
            <third_frame>   K  H  D  H  L  L  Q  E  L  F  F  C  T  Q  I  C  N  L  C  A  R  F  T  T  Y  T  T  L  I  I  Q  H  L  S  K  K  N  V  V  E  T  T  R  I  V  Y  D  S  R  K  R  W  *  R  E  A  R  P  F  *  T  N  L  E  *  S  *  Q  L  I  M  I  T  H  I  H  V  Y  S  I  N  V  G  Q  *  N  C  R  C  S  F  T  L  I  L  R  Q  Q  *  E  T  Q  K  W  F  G  A  V  P  L  L  A  E  H  C  R  G  G  E  G  S  L  E  L  D  K  L  F  T  S  A  K  T  Q  *  N  N  H  T  T  L  F  F  G  C  S  R  K  T  D  Y  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9282" stop="9515"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKCSRDNKNCVRFAKTMVKRGKALLNEPRIVLTTHHDHSHSCLFNQRRAVELQVFVYTDSTTTIRNTEVVRGSTVIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33329" PGL_stop="30896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33329" e_stop="33222"/>
            <exon e_start="31672" e_stop="31617"/>
            <exon e_start="31528" e_stop="31458"/>
            <exon e_start="31376" e_stop="30896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.592" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33329" e_stop="33222" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="33221" i_stop="31673" i_length="1549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31672" e_stop="31617" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="31616" i_stop="31529" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31528" e_stop="31458" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.592" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31457" i_stop="31377" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="31376" e_stop="30896" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33329" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33329" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33329" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33329" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33328" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33328" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33316" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33316" stop="33222"/>
              <exon start="31672" stop="31617"/>
              <exon start="31528" stop="31458"/>
              <exon start="31376" stop="31085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31289" stop="30896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31213" stop="30896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTCAAAGCCTTGGGATCCTAGGTGGCAGACCTGGAGCATCAACCTATATTGTTGGCGTGCAAGATGATAAAGCCGTTTATCTTGACCCACATGAAGTTCAGCCA : GTTGTTGATATTAAAATGGATAAGCTAGATGTTGATACTTCATCTTATCACTGCAA : TACTGTAAGGCATTTTCCACTGGATTCAATTGATCCCTCCTTGGCTATCGGATTTTACTGTAGAGATAAAA : GTGATTTTGATGATTTCTGTATACGAGCATCTGAGCTAGTAGATCAGTCAAACGGTGCTCCATTGTTTACCATAACTGAGACTCGTAGCTCTGCCACATCAGTTGAGTACAATGACAGGTTGACTAGTGATACTGGAGTCCCGGAACTGGACTCCTTCGATGCTGTAGCCCCCGGTGAATCAGATGGTAGTAGTAGACCTGAAGATGAGTGGCAACTCCTTTGATCTGACGACACAATTCAGGCTCAAAAGTTGTGTAAATAACTACGTAGGTGGTCTACTTGATTGCGTCCGTGGCCTTAATGTGTCATGACTTGTTTGGTGCAGACGATTTCGGGTAAAACTACTGCTGTAAGATAGACATACTTGTGTAGGATTCATCTTTTTTTCTCTACACTTTGATGTTGTCTATAGATTATCCAATTGATTCTTTCTTTCTTTCTTAGTATTCAAATGCAGAAGATTGAATAGTCGTTCCCCTA</gDNA_template>
            <first_frame> F  P  Q  S  L  G  I  L  G  G  R  P  G  A  S  T  Y  I  V  G  V  Q  D  D  K  A  V  Y  L  D  P  H  E  V  Q  P  :  V  V  D  I  K  M  D  K  L  D  V  D  T  S  S  Y  H  C  N :   T  V  R  H  F  P  L  D  S  I  D  P  S  L  A  I  G  F  Y  C  R  D  K   : S  D  F  D  D  F  C  I  R  A  S  E  L  V  D  Q  S  N  G  A  P  L  F  T  I  T  E  T  R  S  S  A  T  S  V  E  Y  N  D  R  L  T  S  D  T  G  V  P  E  L  D  S  F  D  A  V  A  P  G  E  S  D  G  S  S  R  P  E  D  E  W  Q  L  L  *  S  D  D  T  I  Q  A  Q  K  L  C  K  *  L  R  R  W  S  T  *  L  R  P  W  P  *  C  V  M  T  C  L  V  Q  T  I  S  G  K  T  T  A  V  R  *  T  Y  L  C  R  I  H  L  F  F  S  T  L  *  C  C  L  *  I  I  Q  L  I  L  S  F  F  L  S  I  Q  M  Q  K  I  E  *  S  F  P   </first_frame>
            <second_frame>  F  L  K  A  L  G  S  *  V  A  D  L  E  H  Q  P  I  L  L  A  C  K  M  I  K  P  F  I  L  T  H  M  K  F  S  Q :   L  L  I  L  K  W  I  S  *  M  L  I  L  H  L  I  T  A   : I  L  *  G  I  F  H  W  I  Q  L  I  P  P  W  L  S  D  F  T  V  E  I  K  :  V  I  L  M  I  S  V  Y  E  H  L  S  *  *  I  S  Q  T  V  L  H  C  L  P  *  L  R  L  V  A  L  P  H  Q  L  S  T  M  T  G  *  L  V  I  L  E  S  R  N  W  T  P  S  M  L  *  P  P  V  N  Q  M  V  V  V  D  L  K  M  S  G  N  S  F  D  L  T  T  Q  F  R  L  K  S  C  V  N  N  Y  V  G  G  L  L  D  C  V  R  G  L  N  V  S  *  L  V  W  C  R  R  F  R  V  K  L  L  L  *  D  R  H  T  C  V  G  F  I  F  F  S  L  H  F  D  V  V  Y  R  L  S  N  *  F  F  L  S  F  L  V  F  K  C  R  R  L  N  S  R  S  P  </second_frame>
            <third_frame>   S  S  K  P  W  D  P  R  W  Q  T  W  S  I  N  L  Y  C  W  R  A  R  *  *  S  R  L  S  *  P  T  *  S  S  A   : S  C  *  Y  *  N  G  *  A  R  C  *  Y  F  I  L  S  L  Q  :  Y  C  K  A  F  S  T  G  F  N  *  S  L  L  G  Y  R  I  L  L  *  R  *  K :   *  F  *  *  F  L  Y  T  S  I  *  A  S  R  S  V  K  R  C  S  I  V  Y  H  N  *  D  S  *  L  C  H  I  S  *  V  Q  *  Q  V  D  *  *  Y  W  S  P  G  T  G  L  L  R  C  C  S  P  R  *  I  R  W  *  *  *  T  *  R  *  V  A  T  P  L  I  *  R  H  N  S  G  S  K  V  V  *  I  T  T  *  V  V  Y  L  I  A  S  V  A  L  M  C  H  D  L  F  G  A  D  D  F  G  *  N  Y  C  C  K  I  D  I  L  V  *  D  S  S  F  F  L  Y  T  L  M  L  S  I  D  Y  P  I  D  S  F  F  L  S  *  Y  S  N  A  E  D  *  I  V  V  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33329" stop="33222"/>
                    <exon start="31672" stop="31617"/>
                    <exon start="31528" stop="31458"/>
                    <exon start="31376" stop="31153"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPQSLGILGGRPGASTYIVGVQDDKAVYLDPHEVQPVVDIKMDKLDVDTSSYHCNTVRHFPLDSIDPSLAIGFYCRDKSDFDDFCIRASELVDQSNGAPLFTITETRSSATSVEYNDRLTSDTGVPELDSFDAVAPGESDGSSRPEDEWQLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37021" PGL_stop="35050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37021" e_stop="36148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37021" e_stop="36148" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37021" stop="36279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37019" stop="36148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37014" stop="36575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAACGCCACTTTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCTATATAGTTGTCTGATGTAAAAATCCATAAATCCCAATCTTTTCTCCAAATCTCACAACCCCAGATAGTATTTTGACAGAAAGTTGCCTGTTTTAGAGTTCTTTGTGTACCATGTGTCATGATTTGAACTATAATCTTTGATGCCTAAGAAAACCCAGTTTAGTATAAGCTCATCTGATTCAGATTCCCCAAGAAAAAATCTTGGTTCTTCTGTTTCTACAGAGCCAGGACCAGGACCAAGCAGTAGTAGTAGTAGCTGTAAGGTTAATAATAAATCATCTGTTTGGTCTGGTTTATTGGTTTCTCCTTTTTCAATATTTGATAGTGAGCCAAAAGGGTGTTTGAAAAAAAGGGAATTTTGTTGTTCAAAGAAGTATAATGGTATTGGTTGGACTAGTGCTGTGAAAAGAATGATAAACAGTGGCTCAATGAGGAGGATTTTTGGGATGGACAAAACTGGGATGCCTAATGGGTCAAAGAGTGATATTTGGCTTTTGGGTGTTTGCTATAAAGTTGTTCAAGATGATGATTCATCCATAGAACCAACTCAAAGTGAAGGTTTTGCTGCTTTTGTTGATGATTTCTCATCTAGAATTCTTGTTACATAT</gDNA_template>
            <first_frame> V  N  A  T  F  S  N  V  L  T  S  I  H  A  K  I  P  F  N  F  P  I  I  S  T  Q  N  P  I  N  S  Q  S  L  L  Q  L  S  Q  P  Q  I  K  I  L  T  K  L  A  K  I  C  *  F  Y  V  V  L  P  C  K  K  S  Q  N  S  I  N  S  Q  S  L  L  P  F  S  *  P  Q  I  K  I  L  I  K  L  A  S  S  I  *  L  S  D  V  K  I  H  K  S  Q  S  F  L  Q  I  S  Q  P  Q  I  V  F  *  Q  K  V  A  C  F  R  V  L  C  V  P  C  V  M  I  *  T  I  I  F  D  A  *  E  N  P  V  *  Y  K  L  I  *  F  R  F  P  K  K  K  S  W  F  F  C  F  Y  R  A  R  T  R  T  K  Q  *  *  *  *  L  *  G  *  *  *  I  I  C  L  V  W  F  I  G  F  S  F  F  N  I  *  *  *  A  K  R  V  F  E  K  K  G  I  L  L  F  K  E  V  *  W  Y  W  L  D  *  C  C  E  K  N  D  K  Q  W  L  N  E  E  D  F  W  D  G  Q  N  W  D  A  *  W  V  K  E  *  Y  L  A  F  G  C  L  L  *  S  C  S  R  *  *  F  I  H  R  T  N  S  K  *  R  F  C  C  F  C  *  *  F  L  I  *  N  S  C  Y  I  </first_frame>
            <second_frame>  *  T  P  L  S  P  M  F  *  P  Q  Y  T  P  K  F  P  S  I  F  Q  S  L  V  P  K  I  P  S  I  L  N  L  C  F  N  Y  H  N  P  R  S  K  S  *  Q  N  *  Q  K  F  A  S  S  M  L  F  Y  H  V  K  N  P  K  T  P  *  I  H  N  L  Y  C  H  S  H  N  P  R  S  K  S  *  *  N  *  P  V  L  Y  S  C  L  M  *  K  S  I  N  P  N  L  F  S  K  S  H  N  P  R  *  Y  F  D  R  K  L  P  V  L  E  F  F  V  Y  H  V  S  *  F  E  L  *  S  L  M  P  K  K  T  Q  F  S  I  S  S  S  D  S  D  S  P  R  K  N  L  G  S  S  V  S  T  E  P  G  P  G  P  S  S  S  S  S  S  C  K  V  N  N  K  S  S  V  W  S  G  L  L  V  S  P  F  S  I  F  D  S  E  P  K  G  C  L  K  K  R  E  F  C  C  S  K  K  Y  N  G  I  G  W  T  S  A  V  K  R  M  I  N  S  G  S  M  R  R  I  F  G  M  D  K  T  G  M  P  N  G  S  K  S  D  I  W  L  L  G  V  C  Y  K  V  V  Q  D  D  D  S  S  I  E  P  T  Q  S  E  G  F  A  A  F  V  D  D  F  S  S  R  I  L  V  T  Y </second_frame>
            <third_frame>   K  R  H  F  L  Q  C  F  D  L  N  T  R  Q  N  S  L  Q  F  S  N  H  *  Y  P  K  S  H  Q  F  S  I  F  A  S  I  I  T  T  P  D  Q  N  L  D  K  I  S  K  N  L  L  V  L  C  C  S  T  M  *  K  I  P  K  L  H  K  F  T  I  F  T  A  I  L  I  T  P  D  Q  N  L  D  K  I  S  Q  F  Y  I  V  V  *  C  K  N  P  *  I  P  I  F  S  P  N  L  T  T  P  D  S  I  L  T  E  S  C  L  F  *  S  S  L  C  T  M  C  H  D  L  N  Y  N  L  *  C  L  R  K  P  S  L  V  *  A  H  L  I  Q  I  P  Q  E  K  I  L  V  L  L  F  L  Q  S  Q  D  Q  D  Q  A  V  V  V  V  A  V  R  L  I  I  N  H  L  F  G  L  V  Y  W  F  L  L  F  Q  Y  L  I  V  S  Q  K  G  V  *  K  K  G  N  F  V  V  Q  R  S  I  M  V  L  V  G  L  V  L  *  K  E  *  *  T  V  A  Q  *  G  G  F  L  G  W  T  K  L  G  C  L  M  G  Q  R  V  I  F  G  F  W  V  F  A  I  K  L  F  K  M  M  I  H  P  *  N  Q  L  K  V  K  V  L  L  L  L  L  M  I  S  H  L  E  F  L  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36621" stop="36148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLMPKKTQFSISSSDSDSPRKNLGSSVSTEPGPGPSSSSSSCKVNNKSSVWSGLLVSPFSIFDSEPKGCLKKREFCCSKKYNGIGWTSAVKRMINSGSMRRIFGMDKTGMPNGSKSDIWLLGVCYKVVQDDDSSIEPTQSEGFAAFVDDFSSRILVTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37009" e_stop="36755"/>
            <exon e_start="36248" e_stop="36141"/>
            <exon e_start="36030" e_stop="35945"/>
            <exon e_start="35664" e_stop="35614"/>
            <exon e_start="35424" e_stop="35050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.601" acc_prob="0.991" e_score="0.991"/>
          <exon-intron don_prob="0.725" acc_prob="0.972" e_score="0.987"/>
          <exon-intron don_prob="0.978" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37009" e_stop="36755" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36754" i_stop="36249" i_length="506"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="36248" e_stop="36141" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.601" acc_prob="0.991">
            <gDNA_intron_boundary i_start="36140" i_stop="36031" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="36030" e_stop="35945" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.725" acc_prob="0.972">
            <gDNA_intron_boundary i_start="35944" i_stop="35665" i_length="280"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35664" e_stop="35614" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.982">
            <gDNA_intron_boundary i_start="35613" i_stop="35425" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="35424" e_stop="35050" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37009" stop="36755"/>
              <exon start="36248" stop="36141"/>
              <exon start="36030" stop="35956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35965" stop="35945"/>
              <exon start="35664" stop="35614"/>
              <exon start="35424" stop="35050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCAATGTTTTGACCTCAATACACGCCAAAATTCCCTTCAATTTTCCAATCATTAGTACCCAAAATCCCATCAATTCTCAATCTTTGCTTCAATTATCACAACCCCAGATCAAAATCTTGACAAAATTAGCAAAAATTTGCTAGTTCTATGTTGTTCTACCATGTAAAAAATCCCAAAACTCCATAAATTCACAATCTTTACTGCCATTCTCATAACCCCAGATCAAAATCTTGATAAAATTAGCCAGTTCT : ATAAAGTTGTTCAAGATGATGATTCATCCATAGAACCAACTCAAAGTGAAGGTTTTGCTGCTTTTGTTGATGATTTCTCATCTAGAATTCTTGTTACATATCGTAAAG : GTTTTGCTCCTATTGAAGATACTAAGTATACCAGTGATGTTAATTGGGGTTGCATGCTTAGGAGTAGTCAGATGCTTGTTGCTCAG : GCTCTACTTCTTCATCGATTAGGAAGATCGTGGAGAAAATCTATGGACAAG : CCGCTTGAACAAAAGTATGTGGAGATTTTGCACCTCTTTGGTGATTCTGTGGAGTCAGCTTACTCTATCCATAACCTCCTGCAAGCCGGCAAGACTTATGGTCTTTCTCCTGGTTCTTGGGTGGGTCCGTATGCAATGTGCCGCACCTGGGAAACATTAGCACGCTGCAAAAGAGAAGAAACAGGAAATGCAGTCATGTCTCCAGCTATGGCTATCTATGTTGTATCTGGGGATGAAGATGGAGAAAGAGGTGGAGCGCCAGTTCTCTGCGTTGAGGACATTGTCAAGCATTGTTCCGGCTTGGCAAAAGGCGAAGTTGACTGGACACCTGTTCTTTTCTTAGTACCGTTGGTTCTTGGACTTGACAAAATCAAT</gDNA_template>
            <first_frame> F  S  N  V  L  T  S  I  H  A  K  I  P  F  N  F  P  I  I  S  T  Q  N  P  I  N  S  Q  S  L  L  Q  L  S  Q  P  Q  I  K  I  L  T  K  L  A  K  I  C  *  F  Y  V  V  L  P  C  K  K  S  Q  N  S  I  N  S  Q  S  L  L  P  F  S  *  P  Q  I  K  I  L  I  K  L  A  S  S  :  I  K  L  F  K  M  M  I  H  P  *  N  Q  L  K  V  K  V  L  L  L  L  L  M  I  S  H  L  E  F  L  L  H  I  V  K  :  V  L  L  L  L  K  I  L  S  I  P  V  M  L  I  G  V  A  C  L  G  V  V  R  C  L  L  L  R :   L  Y  F  F  I  D  *  E  D  R  G  E  N  L  W  T  S :   R  L  N  K  S  M  W  R  F  C  T  S  L  V  I  L  W  S  Q  L  T  L  S  I  T  S  C  K  P  A  R  L  M  V  F  L  L  V  L  G  W  V  R  M  Q  C  A  A  P  G  K  H  *  H  A  A  K  E  K  K  Q  E  M  Q  S  C  L  Q  L  W  L  S  M  L  Y  L  G  M  K  M  E  K  E  V  E  R  Q  F  S  A  L  R  T  L  S  S  I  V  P  A  W  Q  K  A  K  L  T  G  H  L  F  F  S  *  Y  R  W  F  L  D  L  T  K  S   </first_frame>
            <second_frame>  S  P  M  F  *  P  Q  Y  T  P  K  F  P  S  I  F  Q  S  L  V  P  K  I  P  S  I  L  N  L  C  F  N  Y  H  N  P  R  S  K  S  *  Q  N  *  Q  K  F  A  S  S  M  L  F  Y  H  V  K  N  P  K  T  P  *  I  H  N  L  Y  C  H  S  H  N  P  R  S  K  S  *  *  N  *  P  V  L :   *  S  C  S  R  *  *  F  I  H  R  T  N  S  K  *  R  F  C  C  F  C  *  *  F  L  I  *  N  S  C  Y  I  S  *  R :   F  C  S  Y  *  R  Y  *  V  Y  Q  *  C  *  L  G  L  H  A  *  E  *  S  D  A  C  C  S   : G  S  T  S  S  S  I  R  K  I  V  E  K  I  Y  G  Q   : A  A  *  T  K  V  C  G  D  F  A  P  L  W  *  F  C  G  V  S  L  L  Y  P  *  P  P  A  S  R  Q  D  L  W  S  F  S  W  F  L  G  G  S  V  C  N  V  P  H  L  G  N  I  S  T  L  Q  K  R  R  N  R  K  C  S  H  V  S  S  Y  G  Y  L  C  C  I  W  G  *  R  W  R  K  R  W  S  A  S  S  L  R  *  G  H  C  Q  A  L  F  R  L  G  K  R  R  S  *  L  D  T  C  S  F  L  S  T  V  G  S  W  T  *  Q  N  Q  </second_frame>
            <third_frame>   L  Q  C  F  D  L  N  T  R  Q  N  S  L  Q  F  S  N  H  *  Y  P  K  S  H  Q  F  S  I  F  A  S  I  I  T  T  P  D  Q  N  L  D  K  I  S  K  N  L  L  V  L  C  C  S  T  M  *  K  I  P  K  L  H  K  F  T  I  F  T  A  I  L  I  T  P  D  Q  N  L  D  K  I  S  Q  F   : Y  K  V  V  Q  D  D  D  S  S  I  E  P  T  Q  S  E  G  F  A  A  F  V  D  D  F  S  S  R  I  L  V  T  Y  R  K   : G  F  A  P  I  E  D  T  K  Y  T  S  D  V  N  W  G  C  M  L  R  S  S  Q  M  L  V  A  Q  :  A  L  L  L  H  R  L  G  R  S  W  R  K  S  M  D  K  :  P  L  E  Q  K  Y  V  E  I  L  H  L  F  G  D  S  V  E  S  A  Y  S  I  H  N  L  L  Q  A  G  K  T  Y  G  L  S  P  G  S  W  V  G  P  Y  A  M  C  R  T  W  E  T  L  A  R  C  K  R  E  E  T  G  N  A  V  M  S  P  A  M  A  I  Y  V  V  S  G  D  E  D  G  E  R  G  G  A  P  V  L  C  V  E  D  I  V  K  H  C  S  G  L  A  K  G  E  V  D  W  T  P  V  L  F  L  V  P  L  V  L  G  L  D  K  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36839" stop="36755"/>
                    <exon start="36248" stop="36141"/>
                    <exon start="36030" stop="35945"/>
                    <exon start="35664" stop="35614"/>
                    <exon start="35424" stop="35050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIPKLHKFTIFTAILITPDQNLDKISQFYKVVQDDDSSIEPTQSEGFAAFVDDFSSRILVTYRKGFAPIEDTKYTSDVNWGCMLRSSQMLVAQALLLHRLGRSWRKSMDKPLEQKYVEILHLFGDSVESAYSIHNLLQAGKTYGLSPGSWVGPYAMCRTWETLARCKREETGNAVMSPAMAIYVVSGDEDGERGGAPVLCVEDIVKHCSGLAKGEVDWTPVLFLVPLVLGLDKIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39696" PGL_stop="50705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39696" e_stop="39751"/>
            <exon e_start="41153" e_stop="41212"/>
            <exon e_start="42652" e_stop="42787"/>
            <exon e_start="42995" e_stop="43106"/>
            <exon e_start="43710" e_stop="43809"/>
            <exon e_start="45853" e_stop="45931"/>
            <exon e_start="46022" e_stop="46193"/>
            <exon e_start="46321" e_stop="46401"/>
            <exon e_start="46517" e_stop="46697"/>
            <exon e_start="47212" e_stop="47319"/>
            <exon e_start="48350" e_stop="48377"/>
            <exon e_start="48467" e_stop="48557"/>
            <exon e_start="49770" e_stop="49860"/>
            <exon e_start="49956" e_stop="50034"/>
            <exon e_start="50572" e_stop="50705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.976" e_score="0.993"/>
          <exon-intron don_prob="0.974" acc_prob="0.829" e_score="0.982"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.275" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.950" e_score="0.993"/>
          <exon-intron don_prob="0.516" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.195" acc_prob="0.555" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="39696" e_stop="39751" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39752" i_stop="41152" i_length="1401"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="41153" e_stop="41212" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41213" i_stop="42651" i_length="1439"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="42652" e_stop="42787" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.976">
            <gDNA_intron_boundary i_start="42788" i_stop="42994" i_length="207"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="42995" e_stop="43106" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.829">
            <gDNA_intron_boundary i_start="43107" i_stop="43709" i_length="603"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43710" e_stop="43809" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45853" e_stop="45931" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.275">
            <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46022" e_stop="46193" e_length="172"/>
          </exon>
          <intron i_serial="7" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46401" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="46517" e_stop="46697" e_length="181"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.950">
            <gDNA_intron_boundary i_start="46698" i_stop="47211" i_length="514"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="47212" e_stop="47319" e_length="108"/>
          </exon>
          <intron i_serial="10" don_prob="0.516" acc_prob="0.923">
            <gDNA_intron_boundary i_start="47320" i_stop="48349" i_length="1030"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="48350" e_stop="48377" e_length="28"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="48467" e_stop="48557" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.944" acc_prob="0.970">
            <gDNA_intron_boundary i_start="48558" i_stop="49769" i_length="1212"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="49770" e_stop="49860" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.195" acc_prob="0.555">
            <gDNA_intron_boundary i_start="49861" i_stop="49955" i_length="95"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="49956" e_stop="50034" e_length="79"/>
          </exon>
          <intron i_serial="14" don_prob="0.951" acc_prob="0.957">
            <gDNA_intron_boundary i_start="50035" i_stop="50571" i_length="537"/>
          </intron>
          <exon e_serial="15" e_score="0.992">
            <gDNA_exon_boundary e_start="50572" e_stop="50705" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39696" stop="39751"/>
              <exon start="41153" stop="41212"/>
              <exon start="42652" stop="42787"/>
              <exon start="42995" stop="43106"/>
              <exon start="43710" stop="43803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43755" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46697"/>
              <exon start="47212" stop="47319"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48557"/>
              <exon start="49770" stop="49860"/>
              <exon start="49956" stop="50034"/>
              <exon start="50572" stop="50693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46697"/>
              <exon start="47212" stop="47319"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48557"/>
              <exon start="49770" stop="49860"/>
              <exon start="49956" stop="50034"/>
              <exon start="50572" stop="50676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46641" stop="46697"/>
              <exon start="47212" stop="47319"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48557"/>
              <exon start="49770" stop="49860"/>
              <exon start="49956" stop="50034"/>
              <exon start="50572" stop="50705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCGGAGCCTTTTTTTTCTCCGGCAATTGCCGGCGACGACGACCATTTCCCGCCG : GCTACAGTGAATGAGTGTTGCTACTTGATTGAGCCCATGCCTGCTACACCTATGAAGAAG : AGTGCTACCCGTGGTGGGATTGGGAATGTATTCAACAAATTAACAAGCAAAATTGGAGATCCCGTTGACTTTGAACTTCCAGATTGGTTGAGTAAATGGCAACCCACTCCCTATCCCTATACCTCTATAAGGCGAA : ATATATACCTCACCAATAAGGGTAAGCGGCGGCTAGAAGATGATGGCATATCTTGTACCTGCAGTTCAACGGCAGAATCTTCGGACGTGTGTGGCATGGATTGCCTTTGTAG : CATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG : ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG : TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG : GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA : GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT : AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG : GATTCTCAAACTGAAGTTCCCCCAAAAG : GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG : TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG : ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG : GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTT</gDNA_template>
            <first_frame> A  R  S  L  F  F  L  R  Q  L  P  A  T  T  T  I  S  R  R :   L  Q  *  M  S  V  A  T  *  L  S  P  C  L  L  H  L  *  R  R :   V  L  P  V  V  G  L  G  M  Y  S  T  N  *  Q  A  K  L  E  I  P  L  T  L  N  F  Q  I  G  *  V  N  G  N  P  L  P  I  P  I  P  L  *  G  E  :  I  Y  T  S  P  I  R  V  S  G  G  *  K  M  M  A  Y  L  V  P  A  V  Q  R  Q  N  L  R  T  C  V  A  W  I  A  F  V   : A  C  Y  G  L  A  A  P  R  D  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  K  *  *  R :   L  R  N  V  A  L  G  L  W  Q  M  K  I  S  R  Q  K  S  L  L  *  S  M  L  E  K  :  L  L  M  T  R  H  V  K  S  D  F  G  N  *  S  T  V  G  K  Q  I  F  T  C  V  R  S  I  G  I  W  *  L  M  P  L  I  R  E  T  N  P  D  T  L  I  I  A  V  V  Q  I  L  R  C  R  D   : G  *  L  M  V  R  I  E  L  A  Y  L  Q  R  V  T  L  K  G  A  S  I  *  P  T  I  I   : S  L  F  N  L  V  Q  I  K  I  V  T  V  V  L  *  I  A  S  E  S  W  E  S  D  L  T  N  *  N  F  L  L  Q  M  L  L  H  *  S  *  W  H  A  R  *  L  R  P  F  P  K  R  K  Y  C  Y  R  Q  N  I :   K  T  H  N  N  F  K  L  Y  V  D  *  S  L  K  K  G  N  T  R  I  M  S  N  I  C  E  A  E  T  D  L  L  F  L  R :   I  L  K  L  K  F  P  Q  K  :  E  I  G  V  L  T  L  L  G  K  S  S  I  L  G  I  A  Q  V  K  L  *  E  *  F  A  I  L  T  R   : V  L  L  I  H  W  S  H  E  Y  L  M  F  P  V  P  L  E  S  *  N  S  L  T  E  S  P  K  N  I  * :   S  C  L  K  T  V  V  L  S  T  L  T  C  Q  K  K  I  G  D  F  V  T  L  L  N  R  :  V  L  N  C  R  N  K  D  I  H  D  S  T  S  V  A  D  T  R  Y  I  L  N  S  P  K  L  Q  S  I  L  C  L  C  S  C  C  T  K  C  A  K  F  H   </first_frame>
            <second_frame>  L  G  A  F  F  F  S  G  N  C  R  R  R  R  P  F  P  A   : G  Y  S  E  *  V  L  L  L  D  *  A  H  A  C  Y  T  Y  E  E   : E  C  Y  P  W  W  D  W  E  C  I  Q  Q  I  N  K  Q  N  W  R  S  R  *  L  *  T  S  R  L  V  E  *  M  A  T  H  S  L  S  L  Y  L  Y  K  A  K :   Y  I  P  H  Q  *  G  *  A  A  A  R  R  *  W  H  I  L  Y  L  Q  F  N  G  R  I  F  G  R  V  W  H  G  L  P  L  *  :  H  A  M  V  *  L  H  L  G  M  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  N  S  E   : D  *  E  M  W  H  W  D  C  G  R  *  R  Y  Q  D  K  R  V  C  C  R  V  C  W  R  S :   Y  *  *  Q  D  M  *  R  A  T  L  E  I  E  A  Q  W  G  N  K  F  L  L  V  *  D  Q  *  G  Y  G  D  *  C  H  L  *  G  K  Q  I  Q  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  E  *  N  W  H  I  C  N  A  *  H  *  K  G  R  A  S  D  L  R  L  S  :  V  C  S  I  W  C  R  S  R  L  S  L  W  C  Y  K  L  Q  A  K  A  G  N  Q  T  *  Q  T  K  T  S  F  F  R  C  C  C  T  K  A  S  G  M  P  G  S  C  A  L  S  Q  R  E  S  T  A  I  G  K  T   : *  K  H  T  T  I  S  N  S  M  W  T  R  A  *  R  K  A  T  R  G  S  *  V  I  Y  V  K  L  K  Q  T  Y  F  F  *   : G  F  S  N  *  S  S  P  K  R :   K  L  E  F  *  L  C  S  E  N  P  A  S  S  E  L  H  R  S  N  Y  K  N  N  S  L  F  *  P  E  :  S  C  *  F  T  G  V  T  N  T  *  C  F  Q  F  L  W  N  H  K  T  V  *  Q  N  H  Q  K  T  F   : D  H  V  *  R  R  *  Y  *  A  P  *  L  V  K  R  R  L  A  I  L  *  L  C  L  I  G :   S  *  T  V  E  I  K  I  Y  M  I  Q  P  Q  *  L  I  R  D  I  F  L  T  V  Q  N  C  K  V  S  S  A  F  A  P  A  V  P  N  V  Q  S  F  I  </second_frame>
            <third_frame>   S  E  P  F  F  S  P  A  I  A  G  D  D  D  H  F  P  P  :  A  T  V  N  E  C  C  Y  L  I  E  P  M  P  A  T  P  M  K  K  :  S  A  T  R  G  G  I  G  N  V  F  N  K  L  T  S  K  I  G  D  P  V  D  F  E  L  P  D  W  L  S  K  W  Q  P  T  P  Y  P  Y  T  S  I  R  R   : N  I  Y  L  T  N  K  G  K  R  R  L  E  D  D  G  I  S  C  T  C  S  S  T  A  E  S  S  D  V  C  G  M  D  C  L  C  S :   M  L  W  S  S  C  T  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  I  V  K  :  T  E  K  C  G  T  G  I  V  A  D  E  D  I  K  T  K  E  F  V  V  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  L  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  R  W :   M  I  D  G  E  N  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  I  N  C  K  R  K  L  G  I  R  P  N  K  L  K  L  P  S  S  D  A  A  A  L  K  L  V  A  C  Q  V  A  A  P  F  P  K  E  K  V  L  L  S  A  K  H  :  K  N  T  Q  Q  F  Q  T  L  C  G  L  E  L  K  E  R  Q  H  E  D  H  E  *  Y  M  *  S  *  N  R  P  T  F  S  E  :  D  S  Q  T  E  V  P  P  K   : G  N  W  S  S  D  S  A  R  K  I  Q  H  P  R  N  C  T  G  Q  I  I  R  I  I  R  Y  S  D  Q  S :   P  V  D  S  L  E  S  R  I  P  D  V  S  S  S  F  G  I  I  K  Q  F  D  R  I  T  K  K  H  L  :  I  M  F  E  D  G  S  T  E  H  L  D  L  S  K  E  D  W  R  F  C  N  F  A  *  S   : G  L  K  L  S  K  *  R  Y  T  *  F  N  L  S  S  *  Y  A  I  Y  S  *  Q  S  K  I  A  K  Y  P  L  P  L  L  L  L  Y  Q  M  C  K  V  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39698" stop="39751"/>
                    <exon start="41153" stop="41212"/>
                    <exon start="42652" stop="42787"/>
                    <exon start="42995" stop="43106"/>
                    <exon start="43710" stop="43809"/>
                    <exon start="45853" stop="45931"/>
                    <exon start="46022" stop="46193"/>
                    <exon start="46321" stop="46401"/>
                    <exon start="46517" stop="46697"/>
                    <exon start="47212" stop="47283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEPFFSPAIAGDDDHFPPATVNECCYLIEPMPATPMKKSATRGGIGNVFNKLTSKIGDPVDFELPDWLSKWQPTPYPYTSIRRNIYLTNKGKRRLEDDGISCTCSSTAESSDVCGMDCLCSMLWSSCTSGCKCGSSCLNKPFHQRPVKKMKIVKTEKCGTGIVADEDIKTKEFVVEYVGEVIDDKTCEERLWKLKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQRWMIDGENRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAINCKRKLGIRPNKLKLPSSDAAALKLVACQVAAPFPKEKVLLSAKHKNTQQFQTLCGLELKERQHEDHE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47299" stop="47319"/>
                    <exon start="48350" stop="48377"/>
                    <exon start="48467" stop="48557"/>
                    <exon start="49770" stop="49860"/>
                    <exon start="49956" stop="50030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPTFSEDSQTEVPPKGNWSSDSARKIQHPRNCTGQIIRIIRYSDQSPVDSLESRIPDVSSSFGIIKQFDRITKKHLIMFEDGSTEHLDLSKEDWRFCNFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43708" e_stop="43809"/>
            <exon e_start="45853" e_stop="45931"/>
            <exon e_start="46022" e_stop="46193"/>
            <exon e_start="46321" e_stop="46401"/>
            <exon e_start="46517" e_stop="46697"/>
            <exon e_start="47212" e_stop="47319"/>
            <exon e_start="48350" e_stop="48377"/>
            <exon e_start="48467" e_stop="48557"/>
            <exon e_start="49770" e_stop="49860"/>
            <exon e_start="49956" e_stop="50034"/>
            <exon e_start="50572" e_stop="50705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.275" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.950" e_score="0.989"/>
          <exon-intron don_prob="0.516" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.195" acc_prob="0.555" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43708" e_stop="43809" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45853" e_stop="45931" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.275">
            <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46022" e_stop="46193" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46401" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="46517" e_stop="46697" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.950">
            <gDNA_intron_boundary i_start="46698" i_stop="47211" i_length="514"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47212" e_stop="47319" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.516" acc_prob="0.923">
            <gDNA_intron_boundary i_start="47320" i_stop="48349" i_length="1030"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48350" e_stop="48377" e_length="28"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48467" e_stop="48557" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.944" acc_prob="0.970">
            <gDNA_intron_boundary i_start="48558" i_stop="49769" i_length="1212"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49770" e_stop="49860" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.195" acc_prob="0.555">
            <gDNA_intron_boundary i_start="49861" i_stop="49955" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49956" e_stop="50034" e_length="79"/>
          </exon>
          <intron i_serial="10" don_prob="0.951" acc_prob="0.957">
            <gDNA_intron_boundary i_start="50035" i_stop="50571" i_length="537"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="50572" e_stop="50705" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43708" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43708" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43755" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46697"/>
              <exon start="47212" stop="47319"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48557"/>
              <exon start="49770" stop="49860"/>
              <exon start="49956" stop="50034"/>
              <exon start="50572" stop="50693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46697"/>
              <exon start="47212" stop="47319"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48557"/>
              <exon start="49770" stop="49860"/>
              <exon start="49956" stop="50034"/>
              <exon start="50572" stop="50676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46641" stop="46697"/>
              <exon start="47212" stop="47319"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48557"/>
              <exon start="49770" stop="49860"/>
              <exon start="49956" stop="50034"/>
              <exon start="50572" stop="50705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG : ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG : TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG : GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA : GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT : AAAAACACACAACAATTTCAAACTCTATGTGGACTAGAGCTTAAAGAAAGGCAACACGAGGATCATGAGTAATATATGTGAAGCTGAAACAGACCTACTTTTTCTGAG : GATTCTCAAACTGAAGTTCCCCCAAAAG : GAAATTGGAGTTCTGACTCTGCTCGGAAAATCCAGCATCCTCGGAATTGCACAGGTCAAATTATAAGAATAATTCGCTATTCTGACCAGAG : TCCTGTTGATTCACTGGAGTCACGAATACCTGATGTTTCCAGTTCCTTTGGAATCATAAAACAGTTTGACAGAATCACCAAAAAACATTTG : ATCATGTTTGAAGACGGTAGTACTGAGCACCTTGACTTGTCAAAAGAAGATTGGCGATTTTGTAACTTTGCTTAATCGG : GTCTTAAACTGTCGAAATAAAGATATACATGATTCAACCTCAGTAGCTGATACGCGATATATTCTTAACAGTCCAAAATTGCAAAGTATCCTCTGCCTTTGCTCCTGCTGTACCAAATGTGCAAAGTTTCATTT</gDNA_template>
            <first_frame> S  M  L  W  S  S  C  T  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  I  V  K  :  T  E  K  C  G  T  G  I  V  A  D  E  D  I  K  T  K  E  F  V  V  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  L  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  R  W :   M  I  D  G  E  N  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  I  N  C  K  R  K  L  G  I  R  P  N  K  L  K  L  P  S  S  D  A  A  A  L  K  L  V  A  C  Q  V  A  A  P  F  P  K  E  K  V  L  L  S  A  K  H  :  K  N  T  Q  Q  F  Q  T  L  C  G  L  E  L  K  E  R  Q  H  E  D  H  E  *  Y  M  *  S  *  N  R  P  T  F  S  E  :  D  S  Q  T  E  V  P  P  K   : G  N  W  S  S  D  S  A  R  K  I  Q  H  P  R  N  C  T  G  Q  I  I  R  I  I  R  Y  S  D  Q  S :   P  V  D  S  L  E  S  R  I  P  D  V  S  S  S  F  G  I  I  K  Q  F  D  R  I  T  K  K  H  L  :  I  M  F  E  D  G  S  T  E  H  L  D  L  S  K  E  D  W  R  F  C  N  F  A  *  S   : G  L  K  L  S  K  *  R  Y  T  *  F  N  L  S  S  *  Y  A  I  Y  S  *  Q  S  K  I  A  K  Y  P  L  P  L  L  L  L  Y  Q  M  C  K  V  S  F </first_frame>
            <second_frame>  A  C  Y  G  L  A  A  P  R  D  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  K  *  *  R :   L  R  N  V  A  L  G  L  W  Q  M  K  I  S  R  Q  K  S  L  L  *  S  M  L  E  K  :  L  L  M  T  R  H  V  K  S  D  F  G  N  *  S  T  V  G  K  Q  I  F  T  C  V  R  S  I  G  I  W  *  L  M  P  L  I  R  E  T  N  P  D  T  L  I  I  A  V  V  Q  I  L  R  C  R  D   : G  *  L  M  V  R  I  E  L  A  Y  L  Q  R  V  T  L  K  G  A  S  I  *  P  T  I  I   : S  L  F  N  L  V  Q  I  K  I  V  T  V  V  L  *  I  A  S  E  S  W  E  S  D  L  T  N  *  N  F  L  L  Q  M  L  L  H  *  S  *  W  H  A  R  *  L  R  P  F  P  K  R  K  Y  C  Y  R  Q  N  I :   K  T  H  N  N  F  K  L  Y  V  D  *  S  L  K  K  G  N  T  R  I  M  S  N  I  C  E  A  E  T  D  L  L  F  L  R :   I  L  K  L  K  F  P  Q  K  :  E  I  G  V  L  T  L  L  G  K  S  S  I  L  G  I  A  Q  V  K  L  *  E  *  F  A  I  L  T  R   : V  L  L  I  H  W  S  H  E  Y  L  M  F  P  V  P  L  E  S  *  N  S  L  T  E  S  P  K  N  I  * :   S  C  L  K  T  V  V  L  S  T  L  T  C  Q  K  K  I  G  D  F  V  T  L  L  N  R  :  V  L  N  C  R  N  K  D  I  H  D  S  T  S  V  A  D  T  R  Y  I  L  N  S  P  K  L  Q  S  I  L  C  L  C  S  C  C  T  K  C  A  K  F  H   </second_frame>
            <third_frame>   H  A  M  V  *  L  H  L  G  M  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  N  S  E   : D  *  E  M  W  H  W  D  C  G  R  *  R  Y  Q  D  K  R  V  C  C  R  V  C  W  R  S :   Y  *  *  Q  D  M  *  R  A  T  L  E  I  E  A  Q  W  G  N  K  F  L  L  V  *  D  Q  *  G  Y  G  D  *  C  H  L  *  G  K  Q  I  Q  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  E  *  N  W  H  I  C  N  A  *  H  *  K  G  R  A  S  D  L  R  L  S  :  V  C  S  I  W  C  R  S  R  L  S  L  W  C  Y  K  L  Q  A  K  A  G  N  Q  T  *  Q  T  K  T  S  F  F  R  C  C  C  T  K  A  S  G  M  P  G  S  C  A  L  S  Q  R  E  S  T  A  I  G  K  T   : *  K  H  T  T  I  S  N  S  M  W  T  R  A  *  R  K  A  T  R  G  S  *  V  I  Y  V  K  L  K  Q  T  Y  F  F  *   : G  F  S  N  *  S  S  P  K  R :   K  L  E  F  *  L  C  S  E  N  P  A  S  S  E  L  H  R  S  N  Y  K  N  N  S  L  F  *  P  E  :  S  C  *  F  T  G  V  T  N  T  *  C  F  Q  F  L  W  N  H  K  T  V  *  Q  N  H  Q  K  T  F   : D  H  V  *  R  R  *  Y  *  A  P  *  L  V  K  R  R  L  A  I  L  *  L  C  L  I  G :   S  *  T  V  E  I  K  I  Y  M  I  Q  P  Q  *  L  I  R  D  I  F  L  T  V  Q  N  C  K  V  S  S  A  F  A  P  A  V  P  N  V  Q  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43708" stop="43809"/>
                    <exon start="45853" stop="45931"/>
                    <exon start="46022" stop="46193"/>
                    <exon start="46321" stop="46401"/>
                    <exon start="46517" stop="46697"/>
                    <exon start="47212" stop="47283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMLWSSCTSGCKCGSSCLNKPFHQRPVKKMKIVKTEKCGTGIVADEDIKTKEFVVEYVGEVIDDKTCEERLWKLKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQRWMIDGENRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAINCKRKLGIRPNKLKLPSSDAAALKLVACQVAAPFPKEKVLLSAKHKNTQQFQTLCGLELKERQHEDHE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47299" stop="47319"/>
                    <exon start="48350" stop="48377"/>
                    <exon start="48467" stop="48557"/>
                    <exon start="49770" stop="49860"/>
                    <exon start="49956" stop="50030"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRPTFSEDSQTEVPPKGNWSSDSARKIQHPRNCTGQIIRIIRYSDQSPVDSLESRIPDVSSSFGIIKQFDRITKKHLIMFEDGSTEHLDLSKEDWRFCNFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43708" e_stop="43809"/>
            <exon e_start="45853" e_stop="45931"/>
            <exon e_start="46022" e_stop="46193"/>
            <exon e_start="46321" e_stop="46401"/>
            <exon e_start="46517" e_stop="46697"/>
            <exon e_start="48350" e_stop="48377"/>
            <exon e_start="48467" e_stop="48489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.275" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.923" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="0.929"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43708" e_stop="43809" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="43810" i_stop="45852" i_length="2043"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45853" e_stop="45931" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.275">
            <gDNA_intron_boundary i_start="45932" i_stop="46021" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46022" e_stop="46193" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46194" i_stop="46320" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46401" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46402" i_stop="46516" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="46517" e_stop="46697" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.923">
            <gDNA_intron_boundary i_start="46698" i_stop="48349" i_length="1652"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="48350" e_stop="48377" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="48378" i_stop="48466" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48467" e_stop="48489" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43708" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46697"/>
              <exon start="48350" stop="48377"/>
              <exon start="48467" stop="48489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43708" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43708" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43755" stop="43809"/>
              <exon start="45853" stop="45931"/>
              <exon start="46022" stop="46193"/>
              <exon start="46321" stop="46401"/>
              <exon start="46517" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATGCTATGGTCTAGCTGCACCTCGGGATGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG : ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG : TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG : GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA : GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGCTGCACTAAAGCTAGTGGCATGCCAGGTAGCTGCGCCCTTTCCCAAAGAGAAAGTACTGCTATCGGCAAAACAT : GATTCTCAAACTGAAGTTCCCCCAAAAG : GAAATTGGAGTTCTGACTCTGCT</gDNA_template>
            <first_frame> S  M  L  W  S  S  C  T  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  I  V  K  :  T  E  K  C  G  T  G  I  V  A  D  E  D  I  K  T  K  E  F  V  V  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  L  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  R  W :   M  I  D  G  E  N  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  I  N  C  K  R  K  L  G  I  R  P  N  K  L  K  L  P  S  S  D  A  A  A  L  K  L  V  A  C  Q  V  A  A  P  F  P  K  E  K  V  L  L  S  A  K  H  :  D  S  Q  T  E  V  P  P  K   : G  N  W  S  S  D  S  A </first_frame>
            <second_frame>  A  C  Y  G  L  A  A  P  R  D  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  K  *  *  R :   L  R  N  V  A  L  G  L  W  Q  M  K  I  S  R  Q  K  S  L  L  *  S  M  L  E  K  :  L  L  M  T  R  H  V  K  S  D  F  G  N  *  S  T  V  G  K  Q  I  F  T  C  V  R  S  I  G  I  W  *  L  M  P  L  I  R  E  T  N  P  D  T  L  I  I  A  V  V  Q  I  L  R  C  R  D   : G  *  L  M  V  R  I  E  L  A  Y  L  Q  R  V  T  L  K  G  A  S  I  *  P  T  I  I   : S  L  F  N  L  V  Q  I  K  I  V  T  V  V  L  *  I  A  S  E  S  W  E  S  D  L  T  N  *  N  F  L  L  Q  M  L  L  H  *  S  *  W  H  A  R  *  L  R  P  F  P  K  R  K  Y  C  Y  R  Q  N  M :   I  L  K  L  K  F  P  Q  K  :  E  I  G  V  L  T  L   </second_frame>
            <third_frame>   H  A  M  V  *  L  H  L  G  M  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  N  S  E   : D  *  E  M  W  H  W  D  C  G  R  *  R  Y  Q  D  K  R  V  C  C  R  V  C  W  R  S :   Y  *  *  Q  D  M  *  R  A  T  L  E  I  E  A  Q  W  G  N  K  F  L  L  V  *  D  Q  *  G  Y  G  D  *  C  H  L  *  G  K  Q  I  Q  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  E  *  N  W  H  I  C  N  A  *  H  *  K  G  R  A  S  D  L  R  L  S  :  V  C  S  I  W  C  R  S  R  L  S  L  W  C  Y  K  L  Q  A  K  A  G  N  Q  T  *  Q  T  K  T  S  F  F  R  C  C  C  T  K  A  S  G  M  P  G  S  C  A  L  S  Q  R  E  S  T  A  I  G  K  T   : *  F  S  N  *  S  S  P  K  R :   K  L  E  F  *  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43708" stop="43809"/>
                    <exon start="45853" stop="45931"/>
                    <exon start="46022" stop="46193"/>
                    <exon start="46321" stop="46401"/>
                    <exon start="46517" stop="46697"/>
                    <exon start="48350" stop="48377"/>
                    <exon start="48467" stop="48489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMLWSSCTSGCKCGSSCLNKPFHQRPVKKMKIVKTEKCGTGIVADEDIKTKEFVVEYVGEVIDDKTCEERLWKLKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQRWMIDGENRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAINCKRKLGIRPNKLKLPSSDAAALKLVACQVAAPFPKEKVLLSAKHDSQTEVPPKGNWSSDSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52283" PGL_stop="56139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52283" e_stop="52440"/>
            <exon e_start="53226" e_stop="53422"/>
            <exon e_start="54878" e_stop="54958"/>
            <exon e_start="55085" e_stop="55315"/>
            <exon e_start="55531" e_stop="55608"/>
            <exon e_start="56077" e_stop="56139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="0.862" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="52283" e_stop="52440" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52441" i_stop="53225" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53226" e_stop="53422" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53423" i_stop="54877" i_length="1455"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54878" e_stop="54958" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.988">
            <gDNA_intron_boundary i_start="54959" i_stop="55084" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55085" e_stop="55315" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="55316" i_stop="55530" i_length="215"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55531" e_stop="55608" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="55609" i_stop="56076" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56077" e_stop="56139" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52283" stop="52440"/>
              <exon start="53226" stop="53422"/>
              <exon start="54878" stop="54958"/>
              <exon start="55085" stop="55315"/>
              <exon start="55531" stop="55608"/>
              <exon start="56077" stop="56139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAATTTCACTTTCTTCAGTGCAAATTCGAATTTGAATTTCAATGGCGACACTTTCATGGAGGCACCATACACTAATTCAAGCTCTACTCTCTCGTGGTCCGCTTAAAGAGAAGGATTTTCAATCTATATTCACCAGAATCATCGACAAATCCTCAG : GTAATCATCAGTCACTATTCAATGAATACCTGAGAAAGATAAACGGAGAGCTCGCTTATGTGCAGTTAGAGCTACGGGCATGTAGAAACCAGTATGACGGACATGTGCATTATGGTGTTGTGAACAATGTTTCAGATGAGTCATCCAAACTTGGTACTAAATATTCAGTTCCCCAGATAGCTTTCTATAAAGGCATT : ATTGAAGCAATTGTTCAAGACGCAGCAGCTCAGGGATTTATATCGACCATTGATGCACTGAACATACGGCTCGAAAATCAG : TTTCTAGCTGGAACAGAATCCCAGTCTCAGAGAGGTCATATTCCTGCAGCGTTTAGAAATTTTTCAATGTCTCAAAAGGAGAGGACCCTTGAGGAACTTGCGAGGGACCGCTGGCTTTCTCTAACAGATGGTAAGATAGGACTAGGAGTTCGTTCGTTCCTTGATCTCAGAAGTTGGTTTCGCAGTAATGAGGTTCCAGCATGTGAAGTTTGCAATGAAGCTGCTGTGAAG : GCTGAGCTTTGCAAAAATGAAGGCTGTAATGTTCGTATGCATATGTACTGTCTGAGAATGAAGTTCTCCAAAAGCAAG : GCTGAGAAAGTTTGTCCCGGTTGTGGGACAAGATGGCATTACAACATTGCAAAAGTAGAAGCT</gDNA_template>
            <first_frame> Q  N  F  T  F  F  S  A  N  S  N  L  N  F  N  G  D  T  F  M  E  A  P  Y  T  N  S  S  S  T  L  S  W  S  A  *  R  E  G  F  S  I  Y  I  H  Q  N  H  R  Q  I  L  R :   *  S  S  V  T  I  Q  *  I  P  E  K  D  K  R  R  A  R  L  C  A  V  R  A  T  G  M  *  K  P  V  *  R  T  C  A  L  W  C  C  E  Q  C  F  R  *  V  I  Q  T  W  Y  *  I  F  S  S  P  D  S  F  L  *  R  H   : Y  *  S  N  C  S  R  R  S  S  S  G  I  Y  I  D  H  *  C  T  E  H  T  A  R  K  S   : V  S  S  W  N  R  I  P  V  S  E  R  S  Y  S  C  S  V  *  K  F  F  N  V  S  K  G  E  D  P  *  G  T  C  E  G  P  L  A  F  S  N  R  W  *  D  R  T  R  S  S  F  V  P  *  S  Q  K  L  V  S  Q  *  *  G  S  S  M  *  S  L  Q  *  S  C  C  E   : G  *  A  L  Q  K  *  R  L  *  C  S  Y  A  Y  V  L  S  E  N  E  V  L  Q  K  Q   : G  *  E  S  L  S  R  L  W  D  K  M  A  L  Q  H  C  K  S  R  S  </first_frame>
            <second_frame>  R  I  S  L  S  S  V  Q  I  R  I  *  I  S  M  A  T  L  S  W  R  H  H  T  L  I  Q  A  L  L  S  R  G  P  L  K  E  K  D  F  Q  S  I  F  T  R  I  I  D  K  S  S   : G  N  H  Q  S  L  F  N  E  Y  L  R  K  I  N  G  E  L  A  Y  V  Q  L  E  L  R  A  C  R  N  Q  Y  D  G  H  V  H  Y  G  V  V  N  N  V  S  D  E  S  S  K  L  G  T  K  Y  S  V  P  Q  I  A  F  Y  K  G  I  :  I  E  A  I  V  Q  D  A  A  A  Q  G  F  I  S  T  I  D  A  L  N  I  R  L  E  N  Q  :  F  L  A  G  T  E  S  Q  S  Q  R  G  H  I  P  A  A  F  R  N  F  S  M  S  Q  K  E  R  T  L  E  E  L  A  R  D  R  W  L  S  L  T  D  G  K  I  G  L  G  V  R  S  F  L  D  L  R  S  W  F  R  S  N  E  V  P  A  C  E  V  C  N  E  A  A  V  K  :  A  E  L  C  K  N  E  G  C  N  V  R  M  H  M  Y  C  L  R  M  K  F  S  K  S  K  :  A  E  K  V  C  P  G  C  G  T  R  W  H  Y  N  I  A  K  V  E  A </second_frame>
            <third_frame>   E  F  H  F  L  Q  C  K  F  E  F  E  F  Q  W  R  H  F  H  G  G  T  I  H  *  F  K  L  Y  S  L  V  V  R  L  K  R  R  I  F  N  L  Y  S  P  E  S  S  T  N  P  Q  :  V  I  I  S  H  Y  S  M  N  T  *  E  R  *  T  E  S  S  L  M  C  S  *  S  Y  G  H  V  E  T  S  M  T  D  M  C  I  M  V  L  *  T  M  F  Q  M  S  H  P  N  L  V  L  N  I  Q  F  P  R  *  L  S  I  K  A  L :   L  K  Q  L  F  K  T  Q  Q  L  R  D  L  Y  R  P  L  M  H  *  T  Y  G  S  K  I  S :   F  *  L  E  Q  N  P  S  L  R  E  V  I  F  L  Q  R  L  E  I  F  Q  C  L  K  R  R  G  P  L  R  N  L  R  G  T  A  G  F  L  *  Q  M  V  R  *  D  *  E  F  V  R  S  L  I  S  E  V  G  F  A  V  M  R  F  Q  H  V  K  F  A  M  K  L  L  *  R :   L  S  F  A  K  M  K  A  V  M  F  V  C  I  C  T  V  *  E  *  S  S  P  K  A  R :   L  R  K  F  V  P  V  V  G  Q  D  G  I  T  T  L  Q  K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52320" stop="52440"/>
                    <exon start="53226" stop="53422"/>
                    <exon start="54878" stop="54958"/>
                    <exon start="55085" stop="55315"/>
                    <exon start="55531" stop="55608"/>
                    <exon start="56077" stop="56139"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISMATLSWRHHTLIQALLSRGPLKEKDFQSIFTRIIDKSSGNHQSLFNEYLRKINGELAYVQLELRACRNQYDGHVHYGVVNNVSDESSKLGTKYSVPQIAFYKGIIEAIVQDAAAQGFISTIDALNIRLENQFLAGTESQSQRGHIPAAFRNFSMSQKERTLEELARDRWLSLTDGKIGLGVRSFLDLRSWFRSNEVPACEVCNEAAVKAELCKNEGCNVRMHMYCLRMKFSKSKAEKVCPGCGTRWHYNIAKVEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57795" PGL_stop="57315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57795" e_stop="57315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="57795" e_stop="57315" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57795" stop="57315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTATAAGTGCATAACTTTTCACTTTATTGTTTGAGCATTGTGTTGATTTCTCTAAACTTGTTTTTCGTTGAACAAGATTGTTTTTTCATATACTCATGGAAAGCAACACCGTGCTCAGAAGTTAGAGTGAAATGTTATGCATTTGTGATTATATATTTTCTTGGCTAGAGTTGTATTGCCAAGTGAAGTGTTTTAATTGATTTGAACCTTCGAGTGAGTTGCTTCGTGATCTTCTTATGCCTTAGCTTCAGAACTTACCACTATATCATCAATTCTCGAAGAGTGTGGCCTACCTGAATGCTCTCACTAAACTATTCAGACTGTTGTAAATCTCTACTGTTGAGGCTTTATTTTTGGCAGTTCTTAAATGTGTATCTTAAGTTTTGTAATTAATTTATGTTTGTTTAGTATATCTCTGTTGTTACCCCTTTGTAATCTTTTGGATTCAATGATGAAGTTGGTTTGGAAATATTGTAG</gDNA_template>
            <first_frame> F  I  I  S  A  *  L  F  T  L  L  F  E  H  C  V  D  F  S  K  L  V  F  R  *  T  R  L  F  F  H  I  L  M  E  S  N  T  V  L  R  S  *  S  E  M  L  C  I  C  D  Y  I  F  S  W  L  E  L  Y  C  Q  V  K  C  F  N  *  F  E  P  S  S  E  L  L  R  D  L  L  M  P  *  L  Q  N  L  P  L  Y  H  Q  F  S  K  S  V  A  Y  L  N  A  L  T  K  L  F  R  L  L  *  I  S  T  V  E  A  L  F  L  A  V  L  K  C  V  S  *  V  L  *  L  I  Y  V  C  L  V  Y  L  C  C  Y  P  F  V  I  F  W  I  Q  *  *  S  W  F  G  N  I  V  </first_frame>
            <second_frame>  S  L  *  V  H  N  F  S  L  Y  C  L  S  I  V  L  I  S  L  N  L  F  F  V  E  Q  D  C  F  F  I  Y  S  W  K  A  T  P  C  S  E  V  R  V  K  C  Y  A  F  V  I  I  Y  F  L  G  *  S  C  I  A  K  *  S  V  L  I  D  L  N  L  R  V  S  C  F  V  I  F  L  C  L  S  F  R  T  Y  H  Y  I  I  N  S  R  R  V  W  P  T  *  M  L  S  L  N  Y  S  D  C  C  K  S  L  L  L  R  L  Y  F  W  Q  F  L  N  V  Y  L  K  F  C  N  *  F  M  F  V  *  Y  I  S  V  V  T  P  L  *  S  F  G  F  N  D  E  V  G  L  E  I  L  * </second_frame>
            <third_frame>   H  Y  K  C  I  T  F  H  F  I  V  *  A  L  C  *  F  L  *  T  C  F  S  L  N  K  I  V  F  S  Y  T  H  G  K  Q  H  R  A  Q  K  L  E  *  N  V  M  H  L  *  L  Y  I  F  L  A  R  V  V  L  P  S  E  V  F  *  L  I  *  T  F  E  *  V  A  S  *  S  S  Y  A  L  A  S  E  L  T  T  I  S  S  I  L  E  E  C  G  L  P  E  C  S  H  *  T  I  Q  T  V  V  N  L  Y  C  *  G  F  I  F  G  S  S  *  M  C  I  L  S  F  V  I  N  L  C  L  F  S  I  S  L  L  L  P  L  C  N  L  L  D  S  M  M  K  L  V  W  K  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0053J01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="60121" PGL_stop="57836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60121" e_stop="59930"/>
            <exon e_start="58125" e_stop="57836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.980" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="60121" e_stop="59930" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.980">
            <gDNA_intron_boundary i_start="59929" i_stop="58126" i_length="1804"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58125" e_stop="57836" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60121" stop="59930"/>
              <exon start="58125" stop="57836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTACCGCCGCCGGCTGCGGCATCTCTGCCACCCAATTCCGCCGTCATCGACGTTTGTGCCACGGCGGTGGTTTCATCTATAGCTTTGTACACTGAAAAATTACTGATTTTGAATTTTCGATGATACCCAGATGGAAGAAACATAGCAAAGAATGGTTTTTGTGGATCAGATCTGTATTCATCAAATGATG : GTATTTTCCATGTTAAGAATCTCGAAGCCAATCGATTGAAGACTAGTGCTCGAAAAAGTTATGACGTTGCTGGATGGAATCAGAAGATAAAAACTTATTGTTCGTTTGAAGGAAATGGCACTATGCCTCTCCCTAAAATGTTTAATAGATTGTACGACCAGGGCATGTGGAAGACGAGCTGCTTTCTTATATCACAATGATCAGTCTTCGGAAATTGATGATATAGTGGTTTGGAAGACGAGGCAAAAAAAGCTTACGAAGCAACCTAGTTGAATGTTCAAATCAATTGA</gDNA_template>
            <first_frame> C  Y  R  R  R  L  R  H  L  C  H  P  I  P  P  S  S  T  F  V  P  R  R  W  F  H  L  *  L  C  T  L  K  N  Y  *  F  *  I  F  D  D  T  Q  M  E  E  T  *  Q  R  M  V  F  V  D  Q  I  C  I  H  Q  M  M  :  V  F  S  M  L  R  I  S  K  P  I  D  *  R  L  V  L  E  K  V  M  T  L  L  D  G  I  R  R  *  K  L  I  V  R  L  K  E  M  A  L  C  L  S  L  K  C  L  I  D  C  T  T  R  A  C  G  R  R  A  A  F  L  Y  H  N  D  Q  S  S  E  I  D  D  I  V  V  W  K  T  R  Q  K  K  L  T  K  Q  P  S  *  M  F  K  S  I   </first_frame>
            <second_frame>  V  T  A  A  G  C  G  I  S  A  T  Q  F  R  R  H  R  R  L  C  H  G  G  G  F  I  Y  S  F  V  H  *  K  I  T  D  F  E  F  S  M  I  P  R  W  K  K  H  S  K  E  W  F  L  W  I  R  S  V  F  I  K  *  W :   Y  F  P  C  *  E  S  R  S  Q  S  I  E  D  *  C  S  K  K  L  *  R  C  W  M  E  S  E  D  K  N  L  L  F  V  *  R  K  W  H  Y  A  S  P  *  N  V  *  *  I  V  R  P  G  H  V  E  D  E  L  L  S  Y  I  T  M  I  S  L  R  K  L  M  I  *  W  F  G  R  R  G  K  K  S  L  R  S  N  L  V  E  C  S  N  Q  L  </second_frame>
            <third_frame>   L  P  P  P  A  A  A  S  L  P  P  N  S  A  V  I  D  V  C  A  T  A  V  V  S  S  I  A  L  Y  T  E  K  L  L  I  L  N  F  R  *  Y  P  D  G  R  N  I  A  K  N  G  F  C  G  S  D  L  Y  S  S  N  D   : G  I  F  H  V  K  N  L  E  A  N  R  L  K  T  S  A  R  K  S  Y  D  V  A  G  W  N  Q  K  I  K  T  Y  C  S  F  E  G  N  G  T  M  P  L  P  K  M  F  N  R  L  Y  D  Q  G  M  W  K  T  S  C  F  L  I  S  Q  *  S  V  F  G  N  *  *  Y  S  G  L  E  D  E  A  K  K  A  Y  E  A  T  *  L  N  V  Q  I  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59996" stop="59930"/>
                    <exon start="58125" stop="57926"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPDGRNIAKNGFCGSDLYSSNDGIFHVKNLEANRLKTSARKSYDVAGWNQKIKTYCSFEGNGTMPLPKMFNRLYDQGMWKTSCFLISQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="63100" PGL_stop="70913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63100" e_stop="63659"/>
            <exon e_start="67185" e_stop="67487"/>
            <exon e_start="68882" e_stop="69265"/>
            <exon e_start="70352" e_stop="70913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.987"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="63100" e_stop="63659" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="63660" i_stop="67184" i_length="3525"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67185" e_stop="67487" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68882" e_stop="69265" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="70352" e_stop="70913" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63100" stop="63506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63109" stop="63562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63109" stop="63561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63132" stop="63539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63352" stop="63659"/>
              <exon start="67185" stop="67270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63445" stop="63659"/>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63611" stop="63659"/>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67285" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67327" stop="67487"/>
              <exon start="68882" stop="69265"/>
              <exon start="70352" stop="70554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68917" stop="69210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69265"/>
              <exon start="70352" stop="70662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70577" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTACGTACAAAATCTTATCTTG : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F  C  *  D  P  F  I  F  C  S  W  F  L  S  L  F  S  F  F  C  C  *  *  S  L  S  G  R  P  N  Y  W  L  L  L  L  R  M  G  *  V  N  L  A  F  T  Y  K  I  L  S  W :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </first_frame>
            <second_frame>  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  V  K  T  L  S  F  S  V  L  G  F  C  L  C  F  P  F  F  V  V  D  E  A  Y  Q  E  D  P  I  I  G  C  F  C  *  E  W  D  E  L  I  W  L  L  R  T  K  S  Y  L   : G  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </second_frame>
            <third_frame>   L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L  L  R  P  F  H  F  L  F  L  V  F  V  F  V  F  L  F  L  L  L  M  K  P  I  R  K  T  Q  L  L  V  A  F  V  E  N  G  M  S  *  S  G  F  Y  V  Q  N  L  I  L  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67209" stop="67487"/>
                    <exon start="68882" stop="69265"/>
                    <exon start="70352" stop="70675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63311" stop="63613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFVKTLSFSVLGFCLCFPFFVVDEAYQEDPIIGCFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63100" e_stop="63641"/>
            <exon e_start="67185" e_stop="67487"/>
            <exon e_start="68882" e_stop="69265"/>
            <exon e_start="70352" e_stop="70913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.987"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="63100" e_stop="63641" e_length="542"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="63642" i_stop="67184" i_length="3543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67185" e_stop="67487" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68882" e_stop="69265" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="70352" e_stop="70913" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63100" stop="63506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63109" stop="63562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63109" stop="63561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63132" stop="63539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63536" stop="63641"/>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67285" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67327" stop="67487"/>
              <exon start="68882" stop="69265"/>
              <exon start="70352" stop="70554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68917" stop="69210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69265"/>
              <exon start="70352" stop="70662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70577" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTTGTTAAGACCCTTTCATTTTCTGTTCTTGGTTTTTGTCTTTGTTTTCCTTTTTTTGTTGTTGATGAAGCCTATCAGGAAGACCCAATTATTGGTTGCTTTTGTTGAGAATGGGATGAGTTAATCTGGCTTTTAC : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F  C  *  D  P  F  I  F  C  S  W  F  L  S  L  F  S  F  F  C  C  *  *  S  L  S  G  R  P  N  Y  W  L  L  L  L  R  M  G  *  V  N  L  A  F  T :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </first_frame>
            <second_frame>  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  V  K  T  L  S  F  S  V  L  G  F  C  L  C  F  P  F  F  V  V  D  E  A  Y  Q  E  D  P  I  I  G  C  F  C  *  E  W  D  E  L  I  W  L  L   : R  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </second_frame>
            <third_frame>   L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L  L  R  P  F  H  F  L  F  L  V  F  V  F  V  F  L  F  L  L  L  M  K  P  I  R  K  T  Q  L  L  V  A  F  V  E  N  G  M  S  *  S  G  F  Y  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67209" stop="67487"/>
                    <exon start="68882" stop="69265"/>
                    <exon start="70352" stop="70675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63311" stop="63613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFVKTLSFSVLGFCLCFPFFVVDEAYQEDPIIGCFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63100" e_stop="63508"/>
            <exon e_start="67185" e_stop="67487"/>
            <exon e_start="68882" e_stop="69265"/>
            <exon e_start="70352" e_stop="70913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.605" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="63100" e_stop="63508" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.605" acc_prob="0.992">
            <gDNA_intron_boundary i_start="63509" i_stop="67184" i_length="3676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67185" e_stop="67487" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68882" e_stop="69265" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="70352" e_stop="70913" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63100" stop="63506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63417" stop="63508"/>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67285" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67327" stop="67487"/>
              <exon start="68882" stop="69265"/>
              <exon start="70352" stop="70554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68917" stop="69210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69265"/>
              <exon start="70352" stop="70662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70577" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCTAAGACAGAATTTCCACAAAAAATGGTGTGTTGTACAAAATTCACAATAGCCTTTCAAAAAAATCCAATCTTTTTTAGTATATTTTTTTCAATTTTTTTCTATTTGTACACAAACATGTGTATGTGTCACAAAAATCAGTAAGCTATAAGGGGGGTTGTATCAATTATAAGTTTAAATTATTATGAAATTATGAGGATTTACATGATTTGATTGTGACCCTTTTCAAATCTTTGACTCTTGTTACCCTTTAGATTTGTATACTTGTAAAGAGAAACAAACAAATGGTTTTGTTTTCTCAGATTTACTGTTGAAAAAACAAGAGCCTGTTTTGGTGGACACGAAAATCAAGGAGAAAGCTTTTAAGGATATTTGGTGCATCTCAACCACCCACTCTTACCCTTTT : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> S  S  K  T  E  F  P  Q  K  M  V  C  C  T  K  F  T  I  A  F  Q  K  N  P  I  F  F  S  I  F  F  S  I  F  F  Y  L  Y  T  N  M  C  M  C  H  K  N  Q  *  A  I  R  G  V  V  S  I  I  S  L  N  Y  Y  E  I  M  R  I  Y  M  I  *  L  *  P  F  S  N  L  *  L  L  L  P  F  R  F  V  Y  L  *  R  E  T  N  K  W  F  C  F  L  R  F  T  V  E  K  T  R  A  C  F  G  G  H  E  N  Q  G  E  S  F  *  G  Y  L  V  H  L  N  H  P  L  L  P  F   : *  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </first_frame>
            <second_frame>  P  L  R  Q  N  F  H  K  K  W  C  V  V  Q  N  S  Q  *  P  F  K  K  I  Q  S  F  L  V  Y  F  F  Q  F  F  S  I  C  T  Q  T  C  V  C  V  T  K  I  S  K  L  *  G  G  L  Y  Q  L  *  V  *  I  I  M  K  L  *  G  F  T  *  F  D  C  D  P  F  Q  I  F  D  S  C  Y  P  L  D  L  Y  T  C  K  E  K  Q  T  N  G  F  V  F  S  D  L  L  L  K  K  Q  E  P  V  L  V  D  T  K  I  K  E  K  A  F  K  D  I  W  C  I  S  T  T  H  S  Y  P  F  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </second_frame>
            <third_frame>   L  *  D  R  I  S  T  K  N  G  V  L  Y  K  I  H  N  S  L  S  K  K  S  N  L  F  *  Y  I  F  F  N  F  F  L  F  V  H  K  H  V  Y  V  S  Q  K  S  V  S  Y  K  G  G  C  I  N  Y  K  F  K  L  L  *  N  Y  E  D  L  H  D  L  I  V  T  L  F  K  S  L  T  L  V  T  L  *  I  C  I  L  V  K  R  N  K  Q  M  V  L  F  S  Q  I  Y  C  *  K  N  K  S  L  F  W  W  T  R  K  S  R  R  K  L  L  R  I  F  G  A  S  Q  P  P  T  L  T  L  L :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67209" stop="67487"/>
                    <exon start="68882" stop="69265"/>
                    <exon start="70352" stop="70675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63311" stop="63508"/>
                    <exon start="67185" stop="67208"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDCDPFQIFDSCYPLDLYTCKEKQTNGFVFSDLLLKKQEPVLVDTKIKEKAFKDIWCISTTHSYPFDQGRQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66214" e_stop="66247"/>
            <exon e_start="67185" e_stop="67487"/>
            <exon e_start="68882" e_stop="69265"/>
            <exon e_start="70352" e_stop="70913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66214" e_stop="66247" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.992">
            <gDNA_intron_boundary i_start="66248" i_stop="67184" i_length="937"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67185" e_stop="67487" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.727">
            <gDNA_intron_boundary i_start="67488" i_stop="68881" i_length="1394"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68882" e_stop="69265" e_length="384"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="69266" i_stop="70351" i_length="1086"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="70352" e_stop="70913" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66214" stop="66247"/>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67185" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67285" stop="67487"/>
              <exon start="68882" stop="69193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67327" stop="67487"/>
              <exon start="68882" stop="69265"/>
              <exon start="70352" stop="70554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68917" stop="69210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69001" stop="69265"/>
              <exon start="70352" stop="70740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69047" stop="69265"/>
              <exon start="70352" stop="70662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70577" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAATCCATACCATGAAACTAGCTGCAGATGAG : GATCAGGGCCGTCAAGAGAGCTAGAAGATCAGATTTGTGGAGGATATATATTGTTGTCAACACATAGTAGTTTATATAGATACCATGGCTCCCGGAGGCAGTAACTACCAGGATATTGGTGATTCCCGCAGTGCATATTCTGACTATGGTATTGCACCAGAAAGTGCTGAGTTCAAAAACTCCCCCTTTAGAAAAGCTGCAGCTGTTATTGGTGGGAAGAATGGAGTTGGATCTAATAGTGCTGTTCATGAGCTACTTGAATGCCCTGTTTGTATGAATCCAATGTATCCACCAATTCACCAG : TGTCCAAACGGCCACACGTTATGCGTGAAGTGCAAGTCAAAAGTACATGTGTGTCCAATTTGCCGCCATGAGCTTGGAAACATAAGATGTTTAGCACTGGAAAAAATTGCTGAGTCACTAGAATTGCCGTGCCGATACCAAATTTATGGCTGTCAAGATATATTCACTTATCATACTAGGCTTCGTCATGAGCAGAACTGCAGATTTCGACCATACAATTGCCCATATGCAGGATCTGAATGCGCTGTTACCGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAAGTTGATATGCATGATGGCTGTACCTTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACG : GTTTTTAACTGTTTCGGTCACCAGTTCTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCGAAAAGATTTAGCTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGTTAACATGGCAGGGAGTACCGAGGAGCATCCGTGATAGTCATAAAACTGTCCGAGACAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGTGGTGACAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCCTTCATCGTGGGGATGCCCTGAAAGTATAGTTAGTTATCGCTAAATTGGTTGGTGGCTTAATTTTTTGTAAATGGTTCTATACAGTTTCTGGTTTTTCGGATCGATCGTATCGATTGTAGTTTAGCTCAACTGTGGATCATGTATCTAAAGTTGTGAGGCATTTTAAGCTTTTCTATGACCAGCCATATGATAATCTATCTGGTTATTAGTCTCTTTCT</gDNA_template>
            <first_frame> V  N  P  Y  H  E  T  S  C  R  *   : G  S  G  P  S  R  E  L  E  D  Q  I  C  G  G  Y  I  L  L  S  T  H  S  S  L  Y  R  Y  H  G  S  R  R  Q  *  L  P  G  Y  W  *  F  P  Q  C  I  F  *  L  W  Y  C  T  R  K  C  *  V  Q  K  L  P  L  *  K  S  C  S  C  Y  W  W  E  E  W  S  W  I  *  *  C  C  S  *  A  T  *  M  P  C  L  Y  E  S  N  V  S  T  N  S  P   : V  S  K  R  P  H  V  M  R  E  V  Q  V  K  S  T  C  V  S  N  L  P  P  *  A  W  K  H  K  M  F  S  T  G  K  N  C  *  V  T  R  I  A  V  P  I  P  N  L  W  L  S  R  Y  I  H  L  S  Y  *  A  S  S  *  A  E  L  Q  I  S  T  I  Q  L  P  I  C  R  I  *  M  R  C  Y  R  *  Y  S  V  P  R  C  T  P  K  R  *  S  Q  S  *  Y  A  *  W  L  Y  L  Q  S  S  L  C  Q  I  *  S  S  R  S  *  E  C  Y  M  D  V  D   : G  F  *  L  F  R  S  P  V  L  P  A  L  *  G  F  Q  S  W  I  G  T  G  I  H  G  I  P  S  F  Y  G  *  *  *  *  C  E  K  I  *  L  *  S  *  S  R  W  I  W  Q  K  V  N  M  A  G  S  T  E  E  H  P  *  *  S  *  N  C  P  R  Q  F  R  R  A  D  Y  S  K  E  H  G  T  L  L  L  W  W  *  Q  E  G  A  E  A  K  G  S  W  A  Y  L  A  R  A  I  V  N  *  I  Y  A  S  S  F  I  V  G  M  P  *  K  Y  S  *  L  S  L  N  W  L  V  A  *  F  F  V  N  G  S  I  Q  F  L  V  F  R  I  D  R  I  D  C  S  L  A  Q  L  W  I  M  Y  L  K  L  *  G  I  L  S  F  S  M  T  S  H  M  I  I  Y  L  V  I  S  L  F   </first_frame>
            <second_frame>  S  I  H  T  M  K  L  A  A  D  E  :  D  Q  G  R  Q  E  S  *  K  I  R  F  V  E  D  I  Y  C  C  Q  H  I  V  V  Y  I  D  T  M  A  P  G  G  S  N  Y  Q  D  I  G  D  S  R  S  A  Y  S  D  Y  G  I  A  P  E  S  A  E  F  K  N  S  P  F  R  K  A  A  A  V  I  G  G  K  N  G  V  G  S  N  S  A  V  H  E  L  L  E  C  P  V  C  M  N  P  M  Y  P  P  I  H  Q  :  C  P  N  G  H  T  L  C  V  K  C  K  S  K  V  H  V  C  P  I  C  R  H  E  L  G  N  I  R  C  L  A  L  E  K  I  A  E  S  L  E  L  P  C  R  Y  Q  I  Y  G  C  Q  D  I  F  T  Y  H  T  R  L  R  H  E  Q  N  C  R  F  R  P  Y  N  C  P  Y  A  G  S  E  C  A  V  T  G  D  I  Q  Y  L  V  A  H  L  K  D  D  H  K  V  D  M  H  D  G  C  T  F  N  H  R  Y  V  K  S  N  P  Q  E  V  E  N  A  T  W  M  L  T  :  V  F  N  C  F  G  H  Q  F  C  L  H  F  E  A  F  N  L  G  L  A  P  V  Y  M  A  F  L  R  F  M  G  D  D  D  D  A  K  R  F  S  Y  S  L  E  V  G  G  F  G  R  K  L  T  W  Q  G  V  P  R  S  I  R  D  S  H  K  T  V  R  D  S  L  D  G  L  I  I  Q  R  S  M  A  L  F  F  S  G  G  D  R  K  E  L  K  L  K  V  A  G  R  I  W  R  E  P  L  *  T  R  Y  M  H  L  P  S  S  W  G  C  P  E  S  I  V  S  Y  R  *  I  G  W  W  L  N  F  L  *  M  V  L  Y  S  F  W  F  F  G  S  I  V  S  I  V  V  *  L  N  C  G  S  C  I  *  S  C  E  A  F  *  A  F  L  *  P  A  I  *  *  S  I  W  L  L  V  S  F  </second_frame>
            <third_frame>   Q  S  I  P  *  N  *  L  Q  M  R :   I  R  A  V  K  R  A  R  R  S  D  L  W  R  I  Y  I  V  V  N  T  *  *  F  I  *  I  P  W  L  P  E  A  V  T  T  R  I  L  V  I  P  A  V  H  I  L  T  M  V  L  H  Q  K  V  L  S  S  K  T  P  P  L  E  K  L  Q  L  L  L  V  G  R  M  E  L  D  L  I  V  L  F  M  S  Y  L  N  A  L  F  V  *  I  Q  C  I  H  Q  F  T  S :   V  Q  T  A  T  R  Y  A  *  S  A  S  Q  K  Y  M  C  V  Q  F  A  A  M  S  L  E  T  *  D  V  *  H  W  K  K  L  L  S  H  *  N  C  R  A  D  T  K  F  M  A  V  K  I  Y  S  L  I  I  L  G  F  V  M  S  R  T  A  D  F  D  H  T  I  A  H  M  Q  D  L  N  A  L  L  P  V  I  F  S  T  S  L  H  T  *  K  M  I  T  K  L  I  C  M  M  A  V  P  S  I  I  V  M  S  N  L  I  L  K  K  L  R  M  L  H  G  C  *  R :   F  L  T  V  S  V  T  S  S  A  C  T  L  R  L  S  I  L  D  W  H  R  Y  T  W  H  S  F  V  L  W  V  M  M  M  M  R  K  D  L  A  I  V  L  K  *  V  D  L  A  E  S  *  H  G  R  E  Y  R  G  A  S  V  I  V  I  K  L  S  E  T  V  *  T  G  *  L  F  K  G  A  W  H  S  S  S  L  V  V  T  G  R  S  *  S  *  R  *  L  G  V  F  G  E  S  H  C  K  L  D  I  C  I  F  L  H  R  G  D  A  L  K  V  *  L  V  I  A  K  L  V  G  G  L  I  F  C  K  W  F  Y  T  V  S  G  F  S  D  R  S  Y  R  L  *  F  S  S  T  V  D  H  V  S  K  V  V  R  H  F  K  L  F  Y  D  Q  P  Y  D  N  L  S  G  Y  *  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67209" stop="67487"/>
                    <exon start="68882" stop="69265"/>
                    <exon start="70352" stop="70675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRFVEDIYCCQHIVVYIDTMAPGGSNYQDIGDSRSAYSDYGIAPESAEFKNSPFRKAAAVIGGKNGVGSNSAVHELLECPVCMNPMYPPIHQCPNGHTLCVKCKSKVHVCPICRHELGNIRCLALEKIAESLELPCRYQIYGCQDIFTYHTRLRHEQNCRFRPYNCPYAGSECAVTGDIQYLVAHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGHQFCLHFEAFNLGLAPVYMAFLRFMGDDDDAKRFSYSLEVGGFGRKLTWQGVPRSIRDSHKTVRDSLDGLIIQRSMALFFSGGDRKELKLKVAGRIWREPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80091" PGL_stop="80817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80091" e_stop="80817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="80091" e_stop="80817" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80091" stop="80817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80092" stop="80424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGGCTTAGCATCGATAGGGAGGAGCAAGAAGAGGTGGATGTGAACGATGATTTGGCGAGGGAACACTCGTTTTACACGCAGGGGTTGGAGGGTATACGTCAAGCGTACGTCAACTTTCAGTCAACCGGTGAACCATTTCTGAGGCCCTCTGATTATTACGCTGAAATGGTGAAGTCTGACACTCACATGGAGAAAGTTAAGGGCCGACTCTTGGCTGAGAAGAGGAGGATTGAGGAGTCCGAGGAGAGGAGGAAGGCAAGAGATAACAAGAAACTTGCTAAAGATGTACAAGCACAGAAGATGAAAGAACGAACTAAGCAGAAGAAGCAAGAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAACAAAGTGGCTTCGACAAAGAAGATGCTGGCGGTCTAGATTTGGCATTTAATGGAGGAGAGGCGAATAAACCCTATCAGCGATCAAATAAGAAGAGACCTGGTGTATCTCCCGGAGATCGTTCAGGTGGTAAGGCAACATTTGGTGGAAAAGGTAAGGGGTTTGACAAAAAGAGGAAAAGCAGGGAATTCAAGGATTCAAAGTTTGGATTTGGTGGTAGAAAAGGTTTAAAGAAGCAGAACACTGCTGACACTACCAACGATTTCGGAGGATTCCACAAAGGTGATCGTTCTGCTAAAAACAACAAACGCGTTAAGAGATAATAGTTCTGCTCATCAGTTACTATTTTTTGTTGTA</gDNA_template>
            <first_frame> H  R  L  S  I  D  R  E  E  Q  E  E  V  D  V  N  D  D  L  A  R  E  H  S  F  Y  T  Q  G  L  E  G  I  R  Q  A  Y  V  N  F  Q  S  T  G  E  P  F  L  R  P  S  D  Y  Y  A  E  M  V  K  S  D  T  H  M  E  K  V  K  G  R  L  L  A  E  K  R  R  I  E  E  S  E  E  R  R  K  A  R  D  N  K  K  L  A  K  D  V  Q  A  Q  K  M  K  E  R  T  K  Q  K  K  Q  E  I  E  S  V  K  K  W  R  K  Q  R  Q  Q  S  G  F  D  K  E  D  A  G  G  L  D  L  A  F  N  G  G  E  A  N  K  P  Y  Q  R  S  N  K  K  R  P  G  V  S  P  G  D  R  S  G  G  K  A  T  F  G  G  K  G  K  G  F  D  K  K  R  K  S  R  E  F  K  D  S  K  F  G  F  G  G  R  K  G  L  K  K  Q  N  T  A  D  T  T  N  D  F  G  G  F  H  K  G  D  R  S  A  K  N  N  K  R  V  K  R  *  *  F  C  S  S  V  T  I  F  C  C  </first_frame>
            <second_frame>  T  G  L  A  S  I  G  R  S  K  K  R  W  M  *  T  M  I  W  R  G  N  T  R  F  T  R  R  G  W  R  V  Y  V  K  R  T  S  T  F  S  Q  P  V  N  H  F  *  G  P  L  I  I  T  L  K  W  *  S  L  T  L  T  W  R  K  L  R  A  D  S  W  L  R  R  G  G  L  R  S  P  R  R  G  G  R  Q  E  I  T  R  N  L  L  K  M  Y  K  H  R  R  *  K  N  E  L  S  R  R  S  K  R  L  S  P  L  R  S  G  G  S  R  G  N  K  V  A  S  T  K  K  M  L  A  V  *  I  W  H  L  M  E  E  R  R  I  N  P  I  S  D  Q  I  R  R  D  L  V  Y  L  P  E  I  V  Q  V  V  R  Q  H  L  V  E  K  V  R  G  L  T  K  R  G  K  A  G  N  S  R  I  Q  S  L  D  L  V  V  E  K  V  *  R  S  R  T  L  L  T  L  P  T  I  S  E  D  S  T  K  V  I  V  L  L  K  T  T  N  A  L  R  D  N  S  S  A  H  Q  L  L  F  F  V  V </second_frame>
            <third_frame>   Q  A  *  H  R  *  G  G  A  R  R  G  G  C  E  R  *  F  G  E  G  T  L  V  L  H  A  G  V  G  G  Y  T  S  S  V  R  Q  L  S  V  N  R  *  T  I  S  E  A  L  *  L  L  R  *  N  G  E  V  *  H  S  H  G  E  S  *  G  P  T  L  G  *  E  E  E  D  *  G  V  R  G  E  E  E  G  K  R  *  Q  E  T  C  *  R  C  T  S  T  E  D  E  R  T  N  *  A  E  E  A  R  D  *  V  R  *  E  V  E  E  A  E  A  T  K  W  L  R  Q  R  R  C  W  R  S  R  F  G  I  *  W  R  R  G  E  *  T  L  S  A  I  K  *  E  E  T  W  C  I  S  R  R  S  F  R  W  *  G  N  I  W  W  K  R  *  G  V  *  Q  K  E  E  K  Q  G  I  Q  G  F  K  V  W  I  W  W  *  K  R  F  K  E  A  E  H  C  *  H  Y  Q  R  F  R  R  I  P  Q  R  *  S  F  C  *  K  Q  Q  T  R  *  E  I  I  V  L  L  I  S  Y  Y  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80091" stop="80783"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRLSIDREEQEEVDVNDDLAREHSFYTQGLEGIRQAYVNFQSTGEPFLRPSDYYAEMVKSDTHMEKVKGRLLAEKRRIEESEERRKARDNKKLAKDVQAQKMKERTKQKKQEIESVKKWRKQRQQSGFDKEDAGGLDLAFNGGEANKPYQRSNKKRPGVSPGDRSGGKATFGGKGKGFDKKRKSREFKDSKFGFGGRKGLKKQNTADTTNDFGGFHKGDRSAKNNKRVKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="81814" PGL_stop="84075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81814" e_stop="81893"/>
            <exon e_start="82553" e_stop="82635"/>
            <exon e_start="82890" e_stop="83105"/>
            <exon e_start="83858" e_stop="84075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81814" e_stop="81893" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81894" i_stop="82552" i_length="659"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82553" e_stop="82635" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82636" i_stop="82889" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82890" e_stop="83105" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="83106" i_stop="83857" i_length="752"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="83858" e_stop="84075" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81814" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81831" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279178" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81836" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81838" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81840" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81840" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81840" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81843" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81844" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81845" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81845" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81846" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81846" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81846" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81846" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81846" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81846" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81847" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81849" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81849" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294888" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81849" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81849" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81849" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81850" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81851" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81851" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81852" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225501" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="83884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232206" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81853" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232562" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81855" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81856" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81857" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81857" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81857" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81859" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81860" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81873" stop="81893"/>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82553" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82573" stop="82635"/>
              <exon start="82890" stop="83002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82597" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82630" stop="82635"/>
              <exon start="82890" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82907" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82947" stop="83105"/>
              <exon start="83858" stop="84062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82980" stop="83105"/>
              <exon start="83858" stop="84055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTACAAAACCCTAACCCTAAGGAGAAGACCAGCAATTGCTCTCGAACTCGCCGTACACTCTTCGCCGTCTTCTCGAAG : GTTAGTTGATCAATATGTCGTGCGGAGAAGTTGCTTGCACTTATGCTGCCTTGCTCCTCCATGATGAGGACATTCCAATCACT : GCAGAGAAAATTTCAACTTTAGTTAAAGCAGCTAATGTGACAGTGGAACCATACTGGCCTCTCCTGTTTGCTAAGCTTGCTGAGAAGAGAAACCTTGGTGATCTCATCATGAATGTCGGTGCTGGTGGTGGTGGTGGTGCAGTCGCTGTTGCTGCCCCCACTGGTGGTGCTGCTGGTGGTGCCGCAGCTGCTGCCCCTGCTGCTGAGGAAAAGAAG : GAAGAGCCCAAGGAAGAAAGTGATGATGATATGGGTTTCAGTCTGTTTGATTAGAAGCTCCTCCCAGTACGATTTTTGCTTCTTATTTAAAAATTTGACGAGACTTTGTTATAGCACCCTTGTTGAAGAGTATTTTTGATCTGCTTGTCACAGTTAAATGTAACCTTGACATAATTATGGTTTATGAACATCAGTTATGTTACTTATTTCCGACTCCA</gDNA_template>
            <first_frame> N  Y  K  T  L  T  L  R  R  R  P  A  I  A  L  E  L  A  V  H  S  S  P  S  S  R  R :   L  V  D  Q  Y  V  V  R  R  S  C  L  H  L  C  C  L  A  P  P  *  *  G  H  S  N  H   : C  R  E  N  F  N  F  S  *  S  S  *  C  D  S  G  T  I  L  A  S  P  V  C  *  A  C  *  E  E  K  P  W  *  S  H  H  E  C  R  C  W  W  W  W  W  C  S  R  C  C  C  P  H  W  W  C  C  W  W  C  R  S  C  C  P  C  C  *  G  K  E   : G  R  A  Q  G  R  K  *  *  *  Y  G  F  Q  S  V  *  L  E  A  P  P  S  T  I  F  A  S  Y  L  K  I  *  R  D  F  V  I  A  P  L  L  K  S  I  F  D  L  L  V  T  V  K  C  N  L  D  I  I  M  V  Y  E  H  Q  L  C  Y  L  F  P  T  P </first_frame>
            <second_frame>  I  T  K  P  *  P  *  G  E  D  Q  Q  L  L  S  N  S  P  Y  T  L  R  R  L  L  E   : G  *  L  I  N  M  S  C  G  E  V  A  C  T  Y  A  A  L  L  L  H  D  E  D  I  P  I  T  :  A  E  K  I  S  T  L  V  K  A  A  N  V  T  V  E  P  Y  W  P  L  L  F  A  K  L  A  E  K  R  N  L  G  D  L  I  M  N  V  G  A  G  G  G  G  G  A  V  A  V  A  A  P  T  G  G  A  A  G  G  A  A  A  A  A  P  A  A  E  E  K  K  :  E  E  P  K  E  E  S  D  D  D  M  G  F  S  L  F  D  *  K  L  L  P  V  R  F  L  L  L  I  *  K  F  D  E  T  L  L  *  H  P  C  *  R  V  F  L  I  C  L  S  Q  L  N  V  T  L  T  *  L  W  F  M  N  I  S  Y  V  T  Y  F  R  L   </second_frame>
            <third_frame>   L  Q  N  P  N  P  K  E  K  T  S  N  C  S  R  T  R  R  T  L  F  A  V  F  S  K  :  V  S  *  S  I  C  R  A  E  K  L  L  A  L  M  L  P  C  S  S  M  M  R  T  F  Q  S  L :   Q  R  K  F  Q  L  *  L  K  Q  L  M  *  Q  W  N  H  T  G  L  S  C  L  L  S  L  L  R  R  E  T  L  V  I  S  S  *  M  S  V  L  V  V  V  V  V  Q  S  L  L  L  P  P  L  V  V  L  L  V  V  P  Q  L  L  P  L  L  L  R  K  R  R :   K  S  P  R  K  K  V  M  M  I  W  V  S  V  C  L  I  R  S  S  S  Q  Y  D  F  C  F  L  F  K  N  L  T  R  L  C  Y  S  T  L  V  E  E  Y  F  *  S  A  C  H  S  *  M  *  P  *  H  N  Y  G  L  *  T  S  V  M  L  L  I  S  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82558" stop="82635"/>
                    <exon start="82890" stop="83105"/>
                    <exon start="83858" stop="83911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINMSCGEVACTYAALLLHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKRNLGDLIMNVGAGGGGGAVAVAAPTGGAAGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="91485" PGL_stop="92573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91485" e_stop="91647"/>
            <exon e_start="91731" e_stop="91881"/>
            <exon e_start="92022" e_stop="92152"/>
            <exon e_start="92240" e_stop="92573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.588" e_score="0.994"/>
          <exon-intron don_prob="0.962" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="91485" e_stop="91647" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.588">
            <gDNA_intron_boundary i_start="91648" i_stop="91730" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91731" e_stop="91881" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.877">
            <gDNA_intron_boundary i_start="91882" i_stop="92021" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92022" e_stop="92152" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.986">
            <gDNA_intron_boundary i_start="92153" i_stop="92239" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92240" e_stop="92573" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91485" stop="91647"/>
              <exon start="91731" stop="91881"/>
              <exon start="92022" stop="92152"/>
              <exon start="92240" stop="92573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGGCTGTAGAACAACTCGTTAAAGATGAATCTCCTGAAAAAATGACCTCGGATCAAATTTTCTGGTTATATACTATCATGATAACGGCCACAGTAGTAAAACTTGCCCTTTGGTTATACTGCAGAAGCTCAGGAAACAACATTGTCCGTGCCTACGCAAAG : GATCACTATTTTGACGTGGTTACTAATGTAGTCGGACTGGTAGCAGCTGTACTTGGCGATAAATTCTACTGGTGGATTGATCCTGTTGGTGCCATTATGCTTGCACTTTATACCATCACCAACTGGTCAGGAACTGTTTTAGAAAACGCAG : TGTCACTAGTGGGACAATCAGCCCCACCCGAATACTTGCAAAAGTTAACGTATCTTGTGATAAGACACCCTCAAGTGAAGCGTATTGATACAGTTCGAGCCTACACATTTGGTGTCTTGTACTTCGTAGAG : GTAGATATTGAACTCCCGGAAGATTTGCCTTTGAAAGAAGCACATGCTATCGGAGAAACTCTACAAATAAAACTCGAAAAACTCCCTGAAGTTGAACGAGCATTCGTTCATCTCGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTACCAAACACTGAACCTTAGGTTCATGTTTACGTTTAAGCCCGGATAAAGGAAGAGGGTTGTTATTATTATCGACGATTCGGGGTTTTGTTGTTTTTTTTTACACACATTTTAACTATATAAATGTGTATATTCATATGATCCAGCATAAGGGATTGTTGAAAAGAGAGGATAT</gDNA_template>
            <first_frame> P  G  C  R  T  T  R  *  R  *  I  S  *  K  N  D  L  G  S  N  F  L  V  I  Y  Y  H  D  N  G  H  S  S  K  T  C  P  L  V  I  L  Q  K  L  R  K  Q  H  C  P  C  L  R  K   : G  S  L  F  *  R  G  Y  *  C  S  R  T  G  S  S  C  T  W  R  *  I  L  L  V  D  *  S  C  W  C  H  Y  A  C  T  L  Y  H  H  Q  L  V  R  N  C  F  R  K  R  S :   V  T  S  G  T  I  S  P  T  R  I  L  A  K  V  N  V  S  C  D  K  T  P  S  S  E  A  Y  *  Y  S  S  S  L  H  I  W  C  L  V  L  R  R   : G  R  Y  *  T  P  G  R  F  A  F  E  R  S  T  C  Y  R  R  N  S  T  N  K  T  R  K  T  P  *  S  *  T  S  I  R  S  S  R  F  *  M  *  T  Q  T  R  A  L  C  S  Q  Q  V  T  K  H  *  T  L  G  S  C  L  R  L  S  P  D  K  G  R  G  L  L  L  L  S  T  I  R  G  F  V  V  F  F  Y  T  H  F  N  Y  I  N  V  Y  I  H  M  I  Q  H  K  G  L  L  K  R  E  D   </first_frame>
            <second_frame>  Q  A  V  E  Q  L  V  K  D  E  S  P  E  K  M  T  S  D  Q  I  F  W  L  Y  T  I  M  I  T  A  T  V  V  K  L  A  L  W  L  Y  C  R  S  S  G  N  N  I  V  R  A  Y  A  K  :  D  H  Y  F  D  V  V  T  N  V  V  G  L  V  A  A  V  L  G  D  K  F  Y  W  W  I  D  P  V  G  A  I  M  L  A  L  Y  T  I  T  N  W  S  G  T  V  L  E  N  A   : V  S  L  V  G  Q  S  A  P  P  E  Y  L  Q  K  L  T  Y  L  V  I  R  H  P  Q  V  K  R  I  D  T  V  R  A  Y  T  F  G  V  L  Y  F  V  E  :  V  D  I  E  L  P  E  D  L  P  L  K  E  A  H  A  I  G  E  T  L  Q  I  K  L  E  K  L  P  E  V  E  R  A  F  V  H  L  D  F  E  C  E  H  K  P  E  H  S  V  L  S  R  L  P  N  T  E  P  *  V  H  V  Y  V  *  A  R  I  K  E  E  G  C  Y  Y  Y  R  R  F  G  V  L  L  F  F  F  T  H  I  L  T  I  *  M  C  I  F  I  *  S  S  I  R  D  C  *  K  E  R  I  </second_frame>
            <third_frame>   R  L  *  N  N  S  L  K  M  N  L  L  K  K  *  P  R  I  K  F  S  G  Y  I  L  S  *  *  R  P  Q  *  *  N  L  P  F  G  Y  T  A  E  A  Q  E  T  T  L  S  V  P  T  Q  R :   I  T  I  L  T  W  L  L  M  *  S  D  W  *  Q  L  Y  L  A  I  N  S  T  G  G  L  I  L  L  V  P  L  C  L  H  F  I  P  S  P  T  G  Q  E  L  F  *  K  T  Q  :  C  H  *  W  D  N  Q  P  H  P  N  T  C  K  S  *  R  I  L  *  *  D  T  L  K  *  S  V  L  I  Q  F  E  P  T  H  L  V  S  C  T  S  *  R :   *  I  L  N  S  R  K  I  C  L  *  K  K  H  M  L  S  E  K  L  Y  K  *  N  S  K  N  S  L  K  L  N  E  H  S  F  I  S  I  L  N  V  N  T  N  Q  S  T  L  F  S  A  G  Y  Q  T  L  N  L  R  F  M  F  T  F  K  P  G  *  R  K  R  V  V  I  I  I  D  D  S  G  F  C  C  F  F  L  H  T  F  *  L  Y  K  C  V  Y  S  Y  D  P  A  *  G  I  V  E  K  R  G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91486" stop="91647"/>
                    <exon start="91731" stop="91881"/>
                    <exon start="92022" stop="92152"/>
                    <exon start="92240" stop="92419"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAVEQLVKDESPEKMTSDQIFWLYTIMITATVVKLALWLYCRSSGNNIVRAYAKDHYFDVVTNVVGLVAAVLGDKFYWWIDPVGAIMLALYTITNWSGTVLENAVSLVGQSAPPEYLQKLTYLVIRHPQVKRIDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGETLQIKLEKLPEVERAFVHLDFECEHKPEHSVLSRLPNTEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96294" PGL_stop="98656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96294" e_stop="96624"/>
            <exon e_start="97314" e_stop="97434"/>
            <exon e_start="97529" e_stop="97763"/>
            <exon e_start="98572" e_stop="98656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.889" e_score="0.997"/>
          <exon-intron don_prob="0.571" acc_prob="0.952" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="96294" e_stop="96624" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.889">
            <gDNA_intron_boundary i_start="96625" i_stop="97313" i_length="689"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="97314" e_stop="97434" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.571" acc_prob="0.952">
            <gDNA_intron_boundary i_start="97435" i_stop="97528" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="97529" e_stop="97763" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97764" i_stop="98571" i_length="808"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="98572" e_stop="98656" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96294" stop="96624"/>
              <exon start="97314" stop="97434"/>
              <exon start="97529" stop="97763"/>
              <exon start="98572" stop="98656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTCACCGGATCTTCACCGTCCGATCGGAAATCATTACCGGCGAATCCATTTCGCAGTGAAAAATCTGCCGGAGTTGTAGCAATTCCGGTGATGGATCAATGGAGAACTAAAACACCGGAGAAACCGATCCAAAATCGCATGGCGCGATCACTGCAGTCCCTGAAAGACGTCAGAGAAGCTTCTCAGAAGCTCCGGAAACACGATCTGATCCAACGCGAGGTTTCTGATCCGTTATTAAGCTACGGTGAAGTGAAATCTCCATTGGTAGCTGGATCGCCGGTTTCTGAACGGAAGAAGCATGTGAACTCGGTAAAGCTGCCGGAAAA : GTATGAAATGTTGGAAAAATTACTTCAATAGCATGGATAGTTCAATTCGGCTGCTACATTTGAAGGGATCTGCAACAACTTTCACTAATATTAGTGCGAAAGTAGAGAGTTTGATCGATAA : GAGGTTTACTTGCAGTCATTTAGCTCAGCTGAAGTTTATTTTACCTGAAGCCATTGAGATAAAGAAGATTCTCAAGCACGATGAGCGCAGTTGGTGCATGAAGCCGGATCTTTATATCACTTTAAATGCAAATGCAGTTGATAATAGTGAGAAGTGGAAATCTAACAGTAGCAGTGTTCTATTGAGGAAAATATTCCGCTCTCGGCTCTTGGATTTCTTCAAGTCACACCCTGAG : GGTGATGACATTCCTGAGGGAATGCTGCCAGGCCCATTCACTCAGTCTAAGCAAGTAGTGACCAACTCATGTAGACCTTCTGGCT</gDNA_template>
            <first_frame> W  S  S  P  D  L  H  R  P  I  G  N  H  Y  R  R  I  H  F  A  V  K  N  L  P  E  L  *  Q  F  R  *  W  I  N  G  E  L  K  H  R  R  N  R  S  K  I  A  W  R  D  H  C  S  P  *  K  T  S  E  K  L  L  R  S  S  G  N  T  I  *  S  N  A  R  F  L  I  R  Y  *  A  T  V  K  *  N  L  H  W  *  L  D  R  R  F  L  N  G  R  S  M  *  T  R  *  S  C  R  K   : S  M  K  C  W  K  N  Y  F  N  S  M  D  S  S  I  R  L  L  H  L  K  G  S  A  T  T  F  T  N  I  S  A  K  V  E  S  L  I  D  K :   R  F  T  C  S  H  L  A  Q  L  K  F  I  L  P  E  A  I  E  I  K  K  I  L  K  H  D  E  R  S  W  C  M  K  P  D  L  Y  I  T  L  N  A  N  A  V  D  N  S  E  K  W  K  S  N  S  S  S  V  L  L  R  K  I  F  R  S  R  L  L  D  F  F  K  S  H  P  E  :  G  D  D  I  P  E  G  M  L  P  G  P  F  T  Q  S  K  Q  V  V  T  N  S  C  R  P  S  G  </first_frame>
            <second_frame>  G  V  H  R  I  F  T  V  R  S  E  I  I  T  G  E  S  I  S  Q  *  K  I  C  R  S  C  S  N  S  G  D  G  S  M  E  N  *  N  T  G  E  T  D  P  K  S  H  G  A  I  T  A  V  P  E  R  R  Q  R  S  F  S  E  A  P  E  T  R  S  D  P  T  R  G  F  *  S  V  I  K  L  R  *  S  E  I  S  I  G  S  W  I  A  G  F  *  T  E  E  A  C  E  L  G  K  A  A  G  K  :  V  *  N  V  G  K  I  T  S  I  A  W  I  V  Q  F  G  C  Y  I  *  R  D  L  Q  Q  L  S  L  I  L  V  R  K  *  R  V  *  S  I   : R  G  L  L  A  V  I  *  L  S  *  S  L  F  Y  L  K  P  L  R  *  R  R  F  S  S  T  M  S  A  V  G  A  *  S  R  I  F  I  S  L  *  M  Q  M  Q  L  I  I  V  R  S  G  N  L  T  V  A  V  F  Y  *  G  K  Y  S  A  L  G  S  W  I  S  S  S  H  T  L  R :   V  M  T  F  L  R  E  C  C  Q  A  H  S  L  S  L  S  K  *  *  P  T  H  V  D  L  L  A </second_frame>
            <third_frame>   E  F  T  G  S  S  P  S  D  R  K  S  L  P  A  N  P  F  R  S  E  K  S  A  G  V  V  A  I  P  V  M  D  Q  W  R  T  K  T  P  E  K  P  I  Q  N  R  M  A  R  S  L  Q  S  L  K  D  V  R  E  A  S  Q  K  L  R  K  H  D  L  I  Q  R  E  V  S  D  P  L  L  S  Y  G  E  V  K  S  P  L  V  A  G  S  P  V  S  E  R  K  K  H  V  N  S  V  K  L  P  E  K :   Y  E  M  L  E  K  L  L  Q  *  H  G  *  F  N  S  A  A  T  F  E  G  I  C  N  N  F  H  *  Y  *  C  E  S  R  E  F  D  R  *  :  E  V  Y  L  Q  S  F  S  S  A  E  V  Y  F  T  *  S  H  *  D  K  E  D  S  Q  A  R  *  A  Q  L  V  H  E  A  G  S  L  Y  H  F  K  C  K  C  S  *  *  *  *  E  V  E  I  *  Q  *  Q  C  S  I  E  E  N  I  P  L  S  A  L  G  F  L  Q  V  T  P  *   : G  *  *  H  S  *  G  N  A  A  R  P  I  H  S  V  *  A  S  S  D  Q  L  M  *  T  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96612" stop="96624"/>
                    <exon start="97314" stop="97434"/>
                    <exon start="97529" stop="97763"/>
                    <exon start="98572" stop="98655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCRKSMKCWKNYFNSMDSSIRLLHLKGSATTFTNISAKVESLIDKRFTCSHLAQLKFILPEAIEIKKILKHDERSWCMKPDLYITLNANAVDNSEKWKSNSSSVLLRKIFRSRLLDFFKSHPEGDDIPEGMLPGPFTQSKQVVTNSCRPSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="98803" PGL_stop="100315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98803" e_stop="99240"/>
            <exon e_start="99394" e_stop="99595"/>
            <exon e_start="99693" e_stop="99783"/>
            <exon e_start="100134" e_stop="100315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="0.998"/>
          <exon-intron don_prob="0.691" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="98803" e_stop="99240" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="99241" i_stop="99393" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99394" e_stop="99595" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.691" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99596" i_stop="99692" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99693" e_stop="99783" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99784" i_stop="100133" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="100134" e_stop="100315" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98803" stop="99240"/>
              <exon start="99394" stop="99595"/>
              <exon start="99693" stop="99783"/>
              <exon start="100134" stop="100315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98804" stop="99240"/>
              <exon start="99394" stop="99595"/>
              <exon start="99693" stop="99783"/>
              <exon start="100134" stop="100233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGGGCTCGTTTCTCCAGCTTCAATACCCCTTAATGTCCCAAGTTCCACCAAGAAGAAAACAGTAGCATGTTCTGATGCTCCTAAGTTATCTCTAAAACAAACTAGCATCATGAAATGCTCAGCAGGAGGGGTTGTTTTGGCTAGTTCACCATGCCATCCACCTGCTCTTCCTATGATTGAAGCCAAAAAGGGAGAAGATGGTTCTACATCCGCTCCAGCAACCCCTATGCTCGAACCTCCTAAGAGATGTTACATGAGTCCAGATGATCCAGCTGAATCACCAATAAAACTAGCTAGACGCCCGTCAACTAGAAGGTCGTTGCTCTTCGGTACTCCTGTGAAGAGTGCAAATGCTGGTGATAAAGTCTGCGAGAATGGAAGGTTTTCAACTGATAATGATATTCTTGACATTCTTCCTGAGAATCTTCTGCAATCG : ATAGGAGAAAAGGAGAGTGAAGCACTAGCGGAGCAAAATCCAGCCATATCCCAAGCAAAAAGGCGCAAACAGATGATTGCTTGTTTGCCTCACCTCTTTGACATGATTTATTTCCTGTTTCAATCTATTAAACGTTCTGTCATGACGAAAGAGGAGCTCATGCACAGAGTAATTTCAAGCCATTTAGAGATAACGGACAAAA : GTGAAGTTGAACAGCAACTCCTATTACTGCAAGAATTGGCTCCTGAATGGATTTATGAGAAACCAGCATCTAATGGAACTCTTCTCTTACT : TGTTAGCAAGATATCAAATCCTGACACAATTCGTTCAAGACTAGCAGAAGCCAATTGAGAGAAACAAGAAACTAGTGATTTGTACTTTATTTTACCAAATAGACGTGTAAGGAATAACAATTTAGAAAAAAGTTGTAAATAATAAGTGTTTTGTCTAATTAATACAGTACCACTTGCGTTGC</gDNA_template>
            <first_frame> L  G  L  V  S  P  A  S  I  P  L  N  V  P  S  S  T  K  K  K  T  V  A  C  S  D  A  P  K  L  S  L  K  Q  T  S  I  M  K  C  S  A  G  G  V  V  L  A  S  S  P  C  H  P  P  A  L  P  M  I  E  A  K  K  G  E  D  G  S  T  S  A  P  A  T  P  M  L  E  P  P  K  R  C  Y  M  S  P  D  D  P  A  E  S  P  I  K  L  A  R  R  P  S  T  R  R  S  L  L  F  G  T  P  V  K  S  A  N  A  G  D  K  V  C  E  N  G  R  F  S  T  D  N  D  I  L  D  I  L  P  E  N  L  L  Q  S  :  I  G  E  K  E  S  E  A  L  A  E  Q  N  P  A  I  S  Q  A  K  R  R  K  Q  M  I  A  C  L  P  H  L  F  D  M  I  Y  F  L  F  Q  S  I  K  R  S  V  M  T  K  E  E  L  M  H  R  V  I  S  S  H  L  E  I  T  D  K   : S  E  V  E  Q  Q  L  L  L  L  Q  E  L  A  P  E  W  I  Y  E  K  P  A  S  N  G  T  L  L  L  L :   V  S  K  I  S  N  P  D  T  I  R  S  R  L  A  E  A  N  *  E  K  Q  E  T  S  D  L  Y  F  I  L  P  N  R  R  V  R  N  N  N  L  E  K  S  C  K  *  *  V  F  C  L  I  N  T  V  P  L  A  L  </first_frame>
            <second_frame>  S  G  S  F  L  Q  L  Q  Y  P  L  M  S  Q  V  P  P  R  R  K  Q  *  H  V  L  M  L  L  S  Y  L  *  N  K  L  A  S  *  N  A  Q  Q  E  G  L  F  W  L  V  H  H  A  I  H  L  L  F  L  *  L  K  P  K  R  E  K  M  V  L  H  P  L  Q  Q  P  L  C  S  N  L  L  R  D  V  T  *  V  Q  M  I  Q  L  N  H  Q  *  N  *  L  D  A  R  Q  L  E  G  R  C  S  S  V  L  L  *  R  V  Q  M  L  V  I  K  S  A  R  M  E  G  F  Q  L  I  M  I  F  L  T  F  F  L  R  I  F  C  N  R :   *  E  K  R  R  V  K  H  *  R  S  K  I  Q  P  Y  P  K  Q  K  G  A  N  R  *  L  L  V  C  L  T  S  L  T  *  F  I  S  C  F  N  L  L  N  V  L  S  *  R  K  R  S  S  C  T  E  *  F  Q  A  I  *  R  *  R  T  K  :  V  K  L  N  S  N  S  Y  Y  C  K  N  W  L  L  N  G  F  M  R  N  Q  H  L  M  E  L  F  S  Y   : L  L  A  R  Y  Q  I  L  T  Q  F  V  Q  D  *  Q  K  P  I  E  R  N  K  K  L  V  I  C  T  L  F  Y  Q  I  D  V  *  G  I  T  I  *  K  K  V  V  N  N  K  C  F  V  *  L  I  Q  Y  H  L  R  C </second_frame>
            <third_frame>   R  A  R  F  S  S  F  N  T  P  *  C  P  K  F  H  Q  E  E  N  S  S  M  F  *  C  S  *  V  I  S  K  T  N  *  H  H  E  M  L  S  R  R  G  C  F  G  *  F  T  M  P  S  T  C  S  S  Y  D  *  S  Q  K  G  R  R  W  F  Y  I  R  S  S  N  P  Y  A  R  T  S  *  E  M  L  H  E  S  R  *  S  S  *  I  T  N  K  T  S  *  T  P  V  N  *  K  V  V  A  L  R  Y  S  C  E  E  C  K  C  W  *  *  S  L  R  E  W  K  V  F  N  *  *  *  Y  S  *  H  S  S  *  E  S  S  A  I   : D  R  R  K  G  E  *  S  T  S  G  A  K  S  S  H  I  P  S  K  K  A  Q  T  D  D  C  L  F  A  S  P  L  *  H  D  L  F  P  V  S  I  Y  *  T  F  C  H  D  E  R  G  A  H  A  Q  S  N  F  K  P  F  R  D  N  G  Q  K :   *  S  *  T  A  T  P  I  T  A  R  I  G  S  *  M  D  L  *  E  T  S  I  *  W  N  S  S  L  T  :  C  *  Q  D  I  K  S  *  H  N  S  F  K  T  S  R  S  Q  L  R  E  T  R  N  *  *  F  V  L  Y  F  T  K  *  T  C  K  E  *  Q  F  R  K  K  L  *  I  I  S  V  L  S  N  *  Y  S  T  T  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98803" stop="99240"/>
                    <exon start="99394" stop="99595"/>
                    <exon start="99693" stop="99783"/>
                    <exon start="100134" stop="100191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLVSPASIPLNVPSSTKKKTVACSDAPKLSLKQTSIMKCSAGGVVLASSPCHPPALPMIEAKKGEDGSTSAPATPMLEPPKRCYMSPDDPAESPIKLARRPSTRRSLLFGTPVKSANAGDKVCENGRFSTDNDILDILPENLLQSIGEKESEALAEQNPAISQAKRRKQMIACLPHLFDMIYFLFQSIKRSVMTKEELMHRVISSHLEITDKSEVEQQLLLLQELAPEWIYEKPASNGTLLLLVSKISNPDTIRSRLAEAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="104659" PGL_stop="100420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104659" e_stop="104563"/>
            <exon e_start="103406" e_stop="103303"/>
            <exon e_start="102687" e_stop="102522"/>
            <exon e_start="101431" e_stop="101339"/>
            <exon e_start="101050" e_stop="100919"/>
            <exon e_start="100821" e_stop="100420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104659" e_stop="104563" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.860">
            <gDNA_intron_boundary i_start="104562" i_stop="103407" i_length="1156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103406" e_stop="103303" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.441" acc_prob="0.952">
            <gDNA_intron_boundary i_start="103302" i_stop="102688" i_length="615"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102687" e_stop="102522" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101431" e_stop="101339" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101050" e_stop="100919" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100821" e_stop="100420" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104659" stop="104563"/>
              <exon start="103406" stop="103303"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104656" stop="104563"/>
              <exon start="103406" stop="103303"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104656" stop="104563"/>
              <exon start="103406" stop="103303"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104654" stop="104563"/>
              <exon start="103406" stop="103303"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104640" stop="104563"/>
              <exon start="103406" stop="103303"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104635" stop="104563"/>
              <exon start="103406" stop="103303"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="101032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102652" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102542" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100946" stop="100919"/>
              <exon start="100821" stop="100554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAGAGAGAGATGGCTTCCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT : TGAATATGAAGAAGAGGGTAGGGTCTCATGTGAACTGCAGCTCAGAAGATGAGAGTTGTACTTCTGCATCTTCCGAGCATTTACGGGAACATGTAGAGGAAAAG : AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> K  K  E  R  E  M  A  S  H  L  S  F  S  T  P  S  A  L  W  G  S  Y  L  N  P  K  S  S  S  L  S  Q   : L  N  M  K  K  R  V  G  S  H  V  N  C  S  S  E  D  E  S  C  T  S  A  S  S  E  H  L  R  E  H  V  E  E  K  :  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </first_frame>
            <second_frame>  K  K  R  E  R  W  L  P  T  S  H  F  L  L  L  Q  L  Y  G  V  H  T  *  T  P  N  L  P  L  *  V  S  :  *  I  *  R  R  G  *  G  L  M  *  T  A  A  Q  K  M  R  V  V  L  L  H  L  P  S  I  Y  G  N  M  *  R  K  R :   D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </second_frame>
            <third_frame>   K  R  E  R  D  G  F  P  P  L  I  F  Y  S  F  S  S  M  G  F  I  L  K  P  Q  I  F  L  F  K  S  V :   E  Y  E  E  E  G  R  V  S  C  E  L  Q  L  R  R  *  E  L  Y  F  C  I  F  R  A  F  T  G  T  C  R  G  K   : E  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104659" stop="104563"/>
                    <exon start="103406" stop="103303"/>
                    <exon start="102687" stop="102522"/>
                    <exon start="101431" stop="101339"/>
                    <exon start="101050" stop="100920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEREMASHLSFSTPSALWGSYLNPKSSSLSQLNMKKRVGSHVNCSSEDESCTSASSEHLREHVEEKRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104637" e_stop="104563"/>
            <exon e_start="102687" e_stop="102522"/>
            <exon e_start="101431" e_stop="101339"/>
            <exon e_start="101050" e_stop="100919"/>
            <exon e_start="100821" e_stop="100420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104637" e_stop="104563" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.952">
            <gDNA_intron_boundary i_start="104562" i_stop="102688" i_length="1875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102687" e_stop="102522" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101431" e_stop="101339" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101050" e_stop="100919" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100821" e_stop="100420" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104637" stop="104563"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104637" stop="104563"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104636" stop="104563"/>
              <exon start="102687" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102652" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102542" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100946" stop="100919"/>
              <exon start="100821" stop="100554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCTCTCATTTTCTACTCCTTCAGCTCTATGGGGTTCATACTTAAACCCCAAATCTTCCTCTTTAAGTCAGT : AGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> P  T  S  H  F  L  L  L  Q  L  Y  G  V  H  T  *  T  P  N  L  P  L  *  V  S  :  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </first_frame>
            <second_frame>  P  P  L  I  F  Y  S  F  S  S  M  G  F  I  L  K  P  Q  I  F  L  F  K  S  V :   D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </second_frame>
            <third_frame>   H  L  S  F  S  T  P  S  A  L  W  G  S  Y  L  N  P  K  S  S  S  L  S  Q   : *  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104568" stop="104563"/>
                    <exon start="102687" stop="102522"/>
                    <exon start="101431" stop="101339"/>
                    <exon start="101050" stop="100920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="102694" e_stop="102522"/>
            <exon e_start="101431" e_stop="101339"/>
            <exon e_start="101050" e_stop="100919"/>
            <exon e_start="100821" e_stop="100420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.954" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="102694" e_stop="102522" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102521" i_stop="101432" i_length="1090"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101431" e_stop="101339" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101338" i_stop="101051" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101050" e_stop="100919" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100918" i_stop="100822" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100821" e_stop="100420" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102694" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102652" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102542" stop="102522"/>
              <exon start="101431" stop="101339"/>
              <exon start="101050" stop="100919"/>
              <exon start="100821" stop="100420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100946" stop="100919"/>
              <exon start="100821" stop="100554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACAGAGATCTCAAACATCAGTCTCACGGAGATGGTGTCTGACCTGCCTATGCTCAACTGGAGCTCTGATAACTGCTTCTGGAAATCCAATTTCTGAACCAAGAGCAATTGCCTTAGATGGAAATGAAAGTCCTGGCTGTCGGAATTGTGGGGGTAGTGGCGCTATAATTT : GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTAAACAGAAAACGAGCTAAAGACGTTTATGAGTTCACTGAGTGCCCCAATTGTTACG : GACGAGGGAAACTAGTATGTCCTGTATGTTTAGGAACTGGTTTACCTAATAATAAAGGTCTTCTTAGGCGGCCAGACGCAAGGAAGTTACTTGACAAGATGTATAATGGACGACTGTTGCCAAACTCATAAG : GTTGAAAGCTGTACTACACCAGAAGGACAATGAGAAGAGACTCAAAGTAACTATGGATGTAACAACTATTGTGTTGTTGAGTGTACCTGTTAAATCTCTCGATGAACTCTCGTTCTCTCCCTGATCTCTCTTGATACCGGGGTAGTAGTATTCCCGGACTATCATCGACCCCTCCACCATTCTGGAAAGAAATGGGAAGTAGTATCTGCCACATGATAGAGTTAGCATATCAATTATTTCGGAATATTGTGAGAGAAGAGCAATAATTTGGTGTTCAATTTGCATATTGTCTTCATATCTCATAACAATAGAGAATAAAAGAAGAGAAAACAGACTGTTTTGTACTTTGGATTGTATCTGGAAAATTGTTACTTAAAGTTTGTACCATCTATTATTTTTTAA</gDNA_template>
            <first_frame> G  T  E  I  S  N  I  S  L  T  E  M  V  S  D  L  P  M  L  N  W  S  S  D  N  C  F  W  K  S  N  F  *  T  K  S  N  C  L  R  W  K  *  K  S  W  L  S  E  L  W  G  *  W  R  Y  N  L :   *  Y  V  W  W  Y  R  K  M  E  S  S  K  Q  K  T  S  *  R  R  L  *  V  H  *  V  P  Q  L  L  R :   T  R  E  T  S  M  S  C  M  F  R  N  W  F  T  *  *  *  R  S  S  *  A  A  R  R  K  E  V  T  *  Q  D  V  *  W  T  T  V  A  K  L  I  R :   L  K  A  V  L  H  Q  K  D  N  E  K  R  L  K  V  T  M  D  V  T  T  I  V  L  L  S  V  P  V  K  S  L  D  E  L  S  F  S  P  *  S  L  L  I  P  G  *  *  Y  S  R  T  I  I  D  P  S  T  I  L  E  R  N  G  K  *  Y  L  P  H  D  R  V  S  I  S  I  I  S  E  Y  C  E  R  R  A  I  I  W  C  S  I  C  I  L  S  S  Y  L  I  T  I  E  N  K  R  R  E  N  R  L  F  C  T  L  D  C  I  W  K  I  V  T  *  S  L  Y  H  L  L  F  F   </first_frame>
            <second_frame>  E  Q  R  S  Q  T  S  V  S  R  R  W  C  L  T  C  L  C  S  T  G  A  L  I  T  A  S  G  N  P  I  S  E  P  R  A  I  A  L  D  G  N  E  S  P  G  C  R  N  C  G  G  S  G  A  I  I   : C  D  M  C  G  G  T  G  K  W  K  A  L  N  R  K  R  A  K  D  V  Y  E  F  T  E  C  P  N  C  Y   : G  R  G  K  L  V  C  P  V  C  L  G  T  G  L  P  N  N  K  G  L  L  R  R  P  D  A  R  K  L  L  D  K  M  Y  N  G  R  L  L  P  N  S  *   : G  *  K  L  Y  Y  T  R  R  T  M  R  R  D  S  K  *  L  W  M  *  Q  L  L  C  C  *  V  Y  L  L  N  L  S  M  N  S  R  S  L  P  D  L  S  *  Y  R  G  S  S  I  P  G  L  S  S  T  P  P  P  F  W  K  E  M  G  S  S  I  C  H  M  I  E  L  A  Y  Q  L  F  R  N  I  V  R  E  E  Q  *  F  G  V  Q  F  A  Y  C  L  H  I  S  *  Q  *  R  I  K  E  E  K  T  D  C  F  V  L  W  I  V  S  G  K  L  L  L  K  V  C  T  I  Y  Y  F  L  </second_frame>
            <third_frame>   N  R  D  L  K  H  Q  S  H  G  D  G  V  *  P  A  Y  A  Q  L  E  L  *  *  L  L  L  E  I  Q  F  L  N  Q  E  Q  L  P  *  M  E  M  K  V  L  A  V  G  I  V  G  V  V  A  L  *  F  :  V  I  C  V  V  V  Q  E  N  G  K  L  *  T  E  N  E  L  K  T  F  M  S  S  L  S  A  P  I  V  T  :  D  E  G  N  *  Y  V  L  Y  V  *  E  L  V  Y  L  I  I  K  V  F  L  G  G  Q  T  Q  G  S  Y  L  T  R  C  I  M  D  D  C  C  Q  T  H  K  :  V  E  S  C  T  T  P  E  G  Q  *  E  E  T  Q  S  N  Y  G  C  N  N  Y  C  V  V  E  C  T  C  *  I  S  R  *  T  L  V  L  S  L  I  S  L  D  T  G  V  V  V  F  P  D  Y  H  R  P  L  H  H  S  G  K  K  W  E  V  V  S  A  T  *  *  S  *  H  I  N  Y  F  G  I  L  *  E  K  S  N  N  L  V  F  N  L  H  I  V  F  I  S  H  N  N  R  E  *  K  K  R  K  Q  T  V  L  Y  F  G  L  Y  L  E  N  C  Y  L  K  F  V  P  S  I  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102693" stop="102522"/>
                    <exon start="101431" stop="101339"/>
                    <exon start="101050" stop="100920"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQRSQTSVSRRWCLTCLCSTGALITASGNPISEPRAIALDGNESPGCRNCGGSGAIICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARKLLDKMYNGRLLPNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="112260" PGL_stop="105776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112260" e_stop="112234"/>
            <exon e_start="112067" e_stop="111994"/>
            <exon e_start="111905" e_stop="111836"/>
            <exon e_start="110808" e_stop="110753"/>
            <exon e_start="110308" e_stop="110237"/>
            <exon e_start="110108" e_stop="110014"/>
            <exon e_start="109936" e_stop="109870"/>
            <exon e_start="109793" e_stop="109664"/>
            <exon e_start="109556" e_stop="109338"/>
            <exon e_start="109253" e_stop="109117"/>
            <exon e_start="108475" e_stop="108301"/>
            <exon e_start="108212" e_stop="108122"/>
            <exon e_start="107229" e_stop="107072"/>
            <exon e_start="106523" e_stop="106335"/>
            <exon e_start="106140" e_stop="105776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.511" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112260" e_stop="112234" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112233" i_stop="112068" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112067" e_stop="111994" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.987">
            <gDNA_intron_boundary i_start="111993" i_stop="111906" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111905" e_stop="111836" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.511" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111835" i_stop="110809" i_length="1027"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110808" e_stop="110753" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.960">
            <gDNA_intron_boundary i_start="110752" i_stop="110309" i_length="444"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="110308" e_stop="110237" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.938" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110236" i_stop="110109" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110108" e_stop="110014" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="110013" i_stop="109937" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="109936" e_stop="109870" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.895" acc_prob="0.998">
            <gDNA_intron_boundary i_start="109869" i_stop="109794" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="109793" e_stop="109664" e_length="130"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109663" i_stop="109557" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="109556" e_stop="109338" e_length="219"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="109337" i_stop="109254" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="109253" e_stop="109117" e_length="137"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="109116" i_stop="108476" i_length="641"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="108475" e_stop="108301" e_length="175"/>
          </exon>
          <intron i_serial="11" don_prob="0.957" acc_prob="0.984">
            <gDNA_intron_boundary i_start="108300" i_stop="108213" i_length="88"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="108212" e_stop="108122" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108121" i_stop="107230" i_length="892"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="107229" e_stop="107072" e_length="158"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.922">
            <gDNA_intron_boundary i_start="107071" i_stop="106524" i_length="548"/>
          </intron>
          <exon e_serial="14" e_score="0.995">
            <gDNA_exon_boundary e_start="106523" e_stop="106335" e_length="189"/>
          </exon>
          <intron i_serial="14" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106334" i_stop="106141" i_length="194"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="106140" e_stop="105776" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112260" stop="112234"/>
              <exon start="112067" stop="111994"/>
              <exon start="111905" stop="111836"/>
              <exon start="110808" stop="110753"/>
              <exon start="110308" stop="110237"/>
              <exon start="110108" stop="110014"/>
              <exon start="109936" stop="109870"/>
              <exon start="109793" stop="109664"/>
              <exon start="109556" stop="109433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112063" stop="111994"/>
              <exon start="111905" stop="111836"/>
              <exon start="110808" stop="110753"/>
              <exon start="110308" stop="110237"/>
              <exon start="110108" stop="110014"/>
              <exon start="109936" stop="109870"/>
              <exon start="109793" stop="109664"/>
              <exon start="109556" stop="109372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109888" stop="109870"/>
              <exon start="109793" stop="109664"/>
              <exon start="109556" stop="109338"/>
              <exon start="109253" stop="109117"/>
              <exon start="108475" stop="108301"/>
              <exon start="108212" stop="108191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109344" stop="109338"/>
              <exon start="109253" stop="109117"/>
              <exon start="108475" stop="108301"/>
              <exon start="108212" stop="108122"/>
              <exon start="107229" stop="107072"/>
              <exon start="106523" stop="106506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107143" stop="107072"/>
              <exon start="106523" stop="106335"/>
              <exon start="106140" stop="105817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107143" stop="107072"/>
              <exon start="106523" stop="106335"/>
              <exon start="106140" stop="105817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106463" stop="106335"/>
              <exon start="106140" stop="105776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTGCTAGTGGTCCCTTGGCTTTGGAG : GTCGCACTGAAGTTTGAGCATCGAAACAGCAAAGGCTGTAGCTATGGCCCTCCATATGAGTGGCAGGTTTACAA : TACTCTTGGAGGCAGCCATGGAGTGCCTAGAGTGCATTATAAAGGACGGGCAGGAGAGTATTATGTGATG : GTTATGGACATGCTAGGCCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAATC : AATGTCAGCAGAAATGGTGGCTTGTATTGCAGTTGAGTCATTGTCGATTTTGGAAAAGCTGCATGCGAAAGG : TTATGTTCATGGAGATGTGAAGCCAGAAAACTTTTTACTTGGCCAGCCATCAACACCACAAGAGAAGAAGTTGTTCCTAGTTGACTTGGGACTGG : CCACAAAGTGGAAAGACACTTCAAAAGGGCAGCATGTCGGATATGATCAGCGTCCTGACACGTTCAG : AGGGACTGTTCGCTATGCAAGTGCACATGCTCACTTGGGAAGGACTGCCAGTAGAAGAGATGATTTGGAATCACTTGCATATACACTAATTTTTCTTCATCGAGGCAGGCTCCCATGGCAGGGCTATCAG : GGTGATAACAAATCATTTTTAGTCTGTAAAAAAAAGATGGCAACATCTCCAGAGATGCTTTGTTGCTTCTGCCCTGCACCTTTTAGAGAATTTCTTGATACAGTAATTAACATGAAGTTTGATGAAGAACCGAAATATTCAAAGTTAATCTCTTTATTTGGGAGCTTGCTTGGAGCTGATCCTGCTATAAGGCCGATCAACACAGATGGTGCTCAAAAG : GCTATTCAAGTTGGCCAAAAGCGGGGGAGACTAACTTTAAATGAGGAAGAAGAGCAGCCTCAGAAGAAAATTCGAATCGGTGTTCCTGCGACGCAATGGATTTCAATATATAATGCCAGAAAGCCGATGAAACAGAG : GTACCATTACAATGTAGCAGACACAAGATTGGCACAGCATGTGGAGAAAGGGTCTGTGGATGGTTTGTCTATAAGTTGTGTAGCATCATGTTCTAGCTTATGGGCTATCATCATGGATGCTGGAACGAACTTCACTAGCCAAGTTTATGAGCTGTCACCTTTCTTCTTACACAAG : GAGTGGATTATGGAGCAATGGGAGAAAAACTATTATATTAGTTCTCTTGCTGGTGGCATAAATGGAGCCTCTTTAGTAGTAATGTCAAAAG : GCACACAGTTCACTCAACAGTCTTATAAAGTCAGTGAGTCATTTCCCTTCAAGTGGATAAGCAAGAAATGGAAAGAAGGGTTCCATGTGACCTCCATGGCAACTGCTAACACTAGGTGGGCTGTTGTTATGTCACGCAATTCAGGCTTCAGTGATCAG : GTGGTAGAGCTTGATTTCCTTTATCCTAGTGAGGGTATTCATAAGAGGTGGGATAATGGTTATCGTATTACGGCAACAGCTGCTACGCCAGACCAAGCTGCTCTTATCCTGAGTGTACCTCGCCGAAGACCTGGTGATGAGACTCAAGAAACTCTGCGAACATCTCAGTTTCCCAGCACACATGTTAAG : GAAAAATGGGGAAAGAATCTGTATCTTTCTTGTCTATGCTATGGACGCACTGTATCTTAAAACAAATCGTGACCAAATTGTTGTAACCCGACATTTGGATCTTATATCTTGTTGTTTCATTGTCCAAGTGTAAATGGATGGTGGTGGTGGTAAGAAGTTAGATGTGTCTTAGAATGTTATGCTATAGGAGAACTTTTAGTTTGTCTTAAAATTATGAAAATGTTGTAGCTGCTCTGTGTAACAGCTTTCTGCTTATGATGTTGTTGTTATCCTACTAGTACAGGAACAATTGTTCTTGCTGCAATAATTGTTTCGTGTACTCAAATTTCTGGGGAAAGTTTTAATGTTATCTTTACCTATCGATT</gDNA_template>
            <first_frame> R  A  S  G  P  L  A  L  E  :  V  A  L  K  F  E  H  R  N  S  K  G  C  S  Y  G  P  P  Y  E  W  Q  V  Y  N :   T  L  G  G  S  H  G  V  P  R  V  H  Y  K  G  R  A  G  E  Y  Y  V  M  :  V  M  D  M  L  G  P  S  L  W  D  V  W  N  S  S  G  Q  S :   M  S  A  E  M  V  A  C  I  A  V  E  S  L  S  I  L  E  K  L  H  A  K  G :   Y  V  H  G  D  V  K  P  E  N  F  L  L  G  Q  P  S  T  P  Q  E  K  K  L  F  L  V  D  L  G  L   : A  T  K  W  K  D  T  S  K  G  Q  H  V  G  Y  D  Q  R  P  D  T  F  R :   G  T  V  R  Y  A  S  A  H  A  H  L  G  R  T  A  S  R  R  D  D  L  E  S  L  A  Y  T  L  I  F  L  H  R  G  R  L  P  W  Q  G  Y  Q  :  G  D  N  K  S  F  L  V  C  K  K  K  M  A  T  S  P  E  M  L  C  C  F  C  P  A  P  F  R  E  F  L  D  T  V  I  N  M  K  F  D  E  E  P  K  Y  S  K  L  I  S  L  F  G  S  L  L  G  A  D  P  A  I  R  P  I  N  T  D  G  A  Q  K  :  A  I  Q  V  G  Q  K  R  G  R  L  T  L  N  E  E  E  E  Q  P  Q  K  K  I  R  I  G  V  P  A  T  Q  W  I  S  I  Y  N  A  R  K  P  M  K  Q  R :   Y  H  Y  N  V  A  D  T  R  L  A  Q  H  V  E  K  G  S  V  D  G  L  S  I  S  C  V  A  S  C  S  S  L  W  A  I  I  M  D  A  G  T  N  F  T  S  Q  V  Y  E  L  S  P  F  F  L  H  K  :  E  W  I  M  E  Q  W  E  K  N  Y  Y  I  S  S  L  A  G  G  I  N  G  A  S  L  V  V  M  S  K   : G  T  Q  F  T  Q  Q  S  Y  K  V  S  E  S  F  P  F  K  W  I  S  K  K  W  K  E  G  F  H  V  T  S  M  A  T  A  N  T  R  W  A  V  V  M  S  R  N  S  G  F  S  D  Q  :  V  V  E  L  D  F  L  Y  P  S  E  G  I  H  K  R  W  D  N  G  Y  R  I  T  A  T  A  A  T  P  D  Q  A  A  L  I  L  S  V  P  R  R  R  P  G  D  E  T  Q  E  T  L  R  T  S  Q  F  P  S  T  H  V  K  :  E  K  W  G  K  N  L  Y  L  S  C  L  C  Y  G  R  T  V  S  *  N  K  S  *  P  N  C  C  N  P  T  F  G  S  Y  I  L  L  F  H  C  P  S  V  N  G  W  W  W  W  *  E  V  R  C  V  L  E  C  Y  A  I  G  E  L  L  V  C  L  K  I  M  K  M  L  *  L  L  C  V  T  A  F  C  L  *  C  C  C  Y  P  T  S  T  G  T  I  V  L  A  A  I  I  V  S  C  T  Q  I  S  G  E  S  F  N  V  I  F  T  Y  R   </first_frame>
            <second_frame>  V  L  V  V  P  W  L  W  R :   S  H  *  S  L  S  I  E  T  A  K  A  V  A  M  A  L  H  M  S  G  R  F  T   : I  L  L  E  A  A  M  E  C  L  E  C  I  I  K  D  G  Q  E  S  I  M  *  W :   L  W  T  C  *  A  L  A  Y  G  M  Y  G  I  P  L  G  N   : Q  C  Q  Q  K  W  W  L  V  L  Q  L  S  H  C  R  F  W  K  S  C  M  R  K   : V  M  F  M  E  M  *  S  Q  K  T  F  Y  L  A  S  H  Q  H  H  K  R  R  S  C  S  *  L  T  W  D  W  :  P  Q  S  G  K  T  L  Q  K  G  S  M  S  D  M  I  S  V  L  T  R  S   : E  G  L  F  A  M  Q  V  H  M  L  T  W  E  G  L  P  V  E  E  M  I  W  N  H  L  H  I  H  *  F  F  F  I  E  A  G  S  H  G  R  A  I  R :   V  I  T  N  H  F  *  S  V  K  K  R  W  Q  H  L  Q  R  C  F  V  A  S  A  L  H  L  L  E  N  F  L  I  Q  *  L  T  *  S  L  M  K  N  R  N  I  Q  S  *  S  L  Y  L  G  A  C  L  E  L  I  L  L  *  G  R  S  T  Q  M  V  L  K  R :   L  F  K  L  A  K  S  G  G  D  *  L  *  M  R  K  K  S  S  L  R  R  K  F  E  S  V  F  L  R  R  N  G  F  Q  Y  I  M  P  E  S  R  *  N  R   : G  T  I  T  M  *  Q  T  Q  D  W  H  S  M  W  R  K  G  L  W  M  V  C  L  *  V  V  *  H  H  V  L  A  Y  G  L  S  S  W  M  L  E  R  T  S  L  A  K  F  M  S  C  H  L  S  S  Y  T  R :   S  G  L  W  S  N  G  R  K  T  I  I  L  V  L  L  L  V  A  *  M  E  P  L  *  *  *  C  Q  K  :  A  H  S  S  L  N  S  L  I  K  S  V  S  H  F  P  S  S  G  *  A  R  N  G  K  K  G  S  M  *  P  P  W  Q  L  L  T  L  G  G  L  L  L  C  H  A  I  Q  A  S  V  I  R :   W  *  S  L  I  S  F  I  L  V  R  V  F  I  R  G  G  I  M  V  I  V  L  R  Q  Q  L  L  R  Q  T  K  L  L  L  S  *  V  Y  L  A  E  D  L  V  M  R  L  K  K  L  C  E  H  L  S  F  P  A  H  M  L  R :   K  N  G  E  R  I  C  I  F  L  V  Y  A  M  D  A  L  Y  L  K  T  N  R  D  Q  I  V  V  T  R  H  L  D  L  I  S  C  C  F  I  V  Q  V  *  M  D  G  G  G  G  K  K  L  D  V  S  *  N  V  M  L  *  E  N  F  *  F  V  L  K  L  *  K  C  C  S  C  S  V  *  Q  L  S  A  Y  D  V  V  V  I  L  L  V  Q  E  Q  L  F  L  L  Q  *  L  F  R  V  L  K  F  L  G  K  V  L  M  L  S  L  P  I  D  </second_frame>
            <third_frame>   C  *  W  S  L  G  F  G   : G  R  T  E  V  *  A  S  K  Q  Q  R  L  *  L  W  P  S  I  *  V  A  G  L  Q  :  Y  S  W  R  Q  P  W  S  A  *  S  A  L  *  R  T  G  R  R  V  L  C  D   : G  Y  G  H  A  R  P  *  L  M  G  C  M  E  F  L  W  A  I  :  N  V  S  R  N  G  G  L  Y  C  S  *  V  I  V  D  F  G  K  A  A  C  E  R  :  L  C  S  W  R  C  E  A  R  K  L  F  T  W  P  A  I  N  T  T  R  E  E  V  V  P  S  *  L  G  T  G :   H  K  V  E  R  H  F  K  R  A  A  C  R  I  *  S  A  S  *  H  V  Q  :  R  D  C  S  L  C  K  C  T  C  S  L  G  K  D  C  Q  *  K  R  *  F  G  I  T  C  I  Y  T  N  F  S  S  S  R  Q  A  P  M  A  G  L  S   : G  *  *  Q  I  I  F  S  L  *  K  K  D  G  N  I  S  R  D  A  L  L  L  L  P  C  T  F  *  R  I  S  *  Y  S  N  *  H  E  V  *  *  R  T  E  I  F  K  V  N  L  F  I  W  E  L  A  W  S  *  S  C  Y  K  A  D  Q  H  R  W  C  S  K   : G  Y  S  S  W  P  K  A  G  E  T  N  F  K  *  G  R  R  A  A  S  E  E  N  S  N  R  C  S  C  D  A  M  D  F  N  I  *  C  Q  K  A  D  E  T  E  :  V  P  L  Q  C  S  R  H  K  I  G  T  A  C  G  E  R  V  C  G  W  F  V  Y  K  L  C  S  I  M  F  *  L  M  G  Y  H  H  G  C  W  N  E  L  H  *  P  S  L  *  A  V  T  F  L  L  T  Q   : G  V  D  Y  G  A  M  G  E  K  L  L  Y  *  F  S  C  W  W  H  K  W  S  L  F  S  S  N  V  K  R :   H  T  V  H  S  T  V  L  *  S  Q  *  V  I  S  L  Q  V  D  K  Q  E  M  E  R  R  V  P  C  D  L  H  G  N  C  *  H  *  V  G  C  C  Y  V  T  Q  F  R  L  Q  *  S   : G  G  R  A  *  F  P  L  S  *  *  G  Y  S  *  E  V  G  *  W  L  S  Y  Y  G  N  S  C  Y  A  R  P  S  C  S  Y  P  E  C  T  S  P  K  T  W  *  *  D  S  R  N  S  A  N  I  S  V  S  Q  H  T  C  *   : G  K  M  G  K  E  S  V  S  F  L  S  M  L  W  T  H  C  I  L  K  Q  I  V  T  K  L  L  *  P  D  I  W  I  L  Y  L  V  V  S  L  S  K  C  K  W  M  V  V  V  V  R  S  *  M  C  L  R  M  L  C  Y  R  R  T  F  S  L  S  *  N  Y  E  N  V  V  A  A  L  C  N  S  F  L  L  M  M  L  L  L  S  Y  *  Y  R  N  N  C  S  C  C  N  N  C  F  V  Y  S  N  F  W  G  K  F  *  C  Y  L  Y  L  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0053J01.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112260" stop="112234"/>
                    <exon start="112067" stop="111994"/>
                    <exon start="111905" stop="111836"/>
                    <exon start="110808" stop="110753"/>
                    <exon start="110308" stop="110237"/>
                    <exon start="110108" stop="110014"/>
                    <exon start="109936" stop="109870"/>
                    <exon start="109793" stop="109664"/>
                    <exon start="109556" stop="109338"/>
                    <exon start="109253" stop="109117"/>
                    <exon start="108475" stop="108301"/>
                    <exon start="108212" stop="108122"/>
                    <exon start="107229" stop="107072"/>
                    <exon start="106523" stop="106335"/>
                    <exon start="106140" stop="106081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1617</number_coding_nucleotides>
                  <number_encoded_amino_acids>539</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASGPLALEVALKFEHRNSKGCSYGPPYEWQVYNTLGGSHGVPRVHYKGRAGEYYVMVMDMLGPSLWDVWNSSGQSMSAEMVACIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWKDTSKGQHVGYDQRPDTFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPAPFREFLDTVINMKFDEEPKYSKLISLFGSLLGADPAIRPINTDGAQKAIQVGQKRGRLTLNEEEEQPQKKIRIGVPATQWISIYNARKPMKQRYHYNVADTRLAQHVEKGSVDGLSISCVASCSSLWAIIMDAGTNFTSQVYELSPFFLHKEWIMEQWEKNYYISSLAGGINGASLVVMSKGTQFTQQSYKVSESFPFKWISKKWKEGFHVTSMATANTRWAVVMSRNSGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATPDQAALILSVPRRRPGDETQETLRTSQFPSTHVKEKWGKNLYLSCLCYGRTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 189 chains have been computed
$ 
$ memory statistics:
$ 309368 bytes spliced alignments in total
$ 147 spliced alignments have been stored
$ 2104 bytes was the average size of a spliced alignment
$ 30576 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1698 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 204 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:34:45
-->
