<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:29:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584672" ref_strand="+" ref_description="SGN-U584672 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|37903683|gb|AAP46144.1| (e_value=0) ferric-chelate reductase [Lycopersicon esculentum]; (*ATH) AT1G01580.1 (e_value=0)  Symbol: None | ferric-chelate reductase, putative, similar to ferric-chelate reductase (FRO1) (Pisum sativum) GI:15341529; contains Pfam profile: PF01794 ferric reductase like transmembrane component | chr1:209395-213041 FORWARD | Aliases: F22L4.12,... ; (*SWP) sp|Q96PH1|NOX5_HUMAN (e_value=6e-20) NADPH oxidase 5 OS=Homo sapiens GN=NOX5; ">
      <seq>gtcctaaagttgtctttttttattataacaaaaaaataaaagtgaaaaaatggctcaaacatcctcttcctctccttctcttaaagcttcatcaagtgttaccaatgatcttcaagcaactataatggctctaatactaattgttactattgggtattttctacttttgatagtaacaccaactaatatgtatagacaaatatggacacccaagattaaagctcacactaccaactccacatactttggagctcaaggaaggactttgttgatgaacacatttcctctcatatttattgctgtcttgggatgtgtatacctccatttatggaagaaatccaataataaaaacatcaacagatttgagaagaaacaaaagttggctatatggaggaggccaataatcatgaaggggctgggaattgtatcaagaatagagcttggtttttttgtgatgtttattgcactcttagtttggacttttgcttcttacttgcacattatttttcccactattacaccaaaatccgtagcaaacagtggagaaaaagtatgggaagccaagttggaagattcagggctaagattgggacttgttggaaatatatgcttaacatttctatttgttccagtcacaagaggctcatctgtgttacaagtatttggtttgacatcagaagctagtgttaaatatcatatatggcttggccatattgtaatgactcttttttctgctcatggcatttgttacattatctattgggcttccactcatcaattgtctgagatgctgaaatggggaaaaactgatatatcaaatttggctggtgaattggcattgctttctggattggtgttgtggatagcaacatttcctaaaattaggagaaagatgtttgaactcttcttctacactcatcatttctacattctctttgtcgtcttcttcgtcttccatgttggtgtttcttacgcttgcatcatgcttcctggtttcttcctcttcatggttggtcgattcttgagattcttacagtcacgatcaaatgttcgtttagtctctgctcgtgttctgccatgtgaaactcttgaactcaatttctccaagactaaaggtttaagttacacaccaactagcatcatgtttgtgaatgtacctagcatttcaaaattgcaatggcatccttttaccatcacttcaagtagtaatttggagccagagaaaatcagtgttgccattaagggtgaaggaagttggtccaaaaaactctaccagatgatctcctcccctaattctgtcgatcgtcttaacgtctctgttgaaggaccttatggacctccttccacacattttctaaggcatgatttattggttatgataagtggaggaagtggaattactcctttcatttccatcattagggagctaattcatacaagtgagtcacaaaaatgcaagacaccagaaatcctacttattagtgtgttcaagaattcggaagatctcaccatgttggaccttctccttcctatatctggtgctccatcagaaacttgtaaactggggctacaaatcgaggcttttgtaacgagagaaaagcaaccagtatcgacagaagacaagaagaatgtgaggactatatggttcaagcccaacccatctgataagcctatcactccaattcttggacaaaacaattggctctggcttggtgctatcatatcatgttccttcctcattttcctgatttccttgggggtcttgaatagatattacatatatccaatcgacaataatactaatgacatattttcgtatccaataaaggcggtgttgaatatgctaatcatttgcatatctatagtcatcacaagtagtgctgcatttgtttggaacaagagacagagtgggactgatgcaaaacagattcagaacatggaaggtgcaactcctatggcttcgcctaattcttggttctataatgccgatagggagatggaaagtttgccccaacaatcactttttcaatcaactaatctccattttggtgaaaggcctgacctcaaaagaatattgtttgagaggaaagaatcaagtgttggagttttagtgtgtggcccaaaaaggatgagacatgaagttgctaacatatgttcatctggtttagcatccaatcttcattttgagtccatcagtttcagttggtgagttagagaatataatgcattctatgcaatggagaaaaataagatggaagtttttttgtttgtttgtgtgcttatgctttggttgattgaattttgcatgtaacatgcttcctttgtactgagtaaatgtaaaaagatacagttaattctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="18279" stop="14517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18067" g_stop="17811" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17810" i_stop="17608" i_length="203">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17607" g_stop="17505" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="360" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17504" i_stop="17367" i_length="138">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17366" g_stop="17175" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="552" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17174" i_stop="17077" i_length="98">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17076" g_stop="16842" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="787" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16841" i_stop="16755" i_length="87">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16754" g_stop="16427" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="1115" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16426" i_stop="16337" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16336" g_stop="16093" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1359" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16092" i_stop="15987" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15986" g_stop="15277" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1360" r_stop="2069" r_length="710" r_score="0.999"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15276" i_stop="15110" i_length="167">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15109" g_stop="14817" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="2070" r_stop="2363" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U584672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18067" e_stop="17811"/>
          <exon e_start="17607" e_stop="17505"/>
          <exon e_start="17366" e_stop="17175"/>
          <exon e_start="17076" e_stop="16842"/>
          <exon e_start="16754" e_stop="16427"/>
          <exon e_start="16336" e_stop="16093"/>
          <exon e_start="15986" e_stop="15277"/>
          <exon e_start="15109" e_stop="14817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCAAGTGTTACCAATGATCTTCAAGCAACTATAATGGCTCTAATATTAATTGTTACTATTGGGTATTTTCTACTTTTGATAGTAACACCAACTAATATGTATAGACAAATATGGACACCCAAGATTAAAGCTCACACTACCAACTCCACATACTTTGGAGCTCAAGGTATATACTTTCGAGGCGAAACCAGAAATTTCGTTAAGAATATTAAAAGAACCTATTTACTTTGTATAATTTTCTAGTTGCACCTTAGTCTATGCTGAGGTTATACATATAAAAGTTGCTTATCATGATTGTTGGTATATATGGTTGTTGGATAAAGATAGAAATTATGAATTTATGTTTAATTTTTTTTTTTTCAAAAACAGGAAGGACTTTGTTGATGAACACATTTCCTCTCATATTTATTGCTGTCTTGGGATGTGTATACCTCCATTTATGGAAGAAATCCAATAATAAAAACATCAACAGGTCAGTAAGGATATCTCCGACTCAAACATTAAATTTTATAAGCACTATTTTAGCGTAATTAACTCTAATTTACTGTATCAAATTTTACTCTTAACAAAAAAAATTAATTTATTTTTGTTTGTATTTTGTGATTAACAGATTTGAGAAGAAACAAAAGTTGGCTATATGGAGGAGGCCAATAATCATGAAGGGGCTGGGAATTGTATCAAGAATAGAGCTTGGTTTTTTTGTGATGTTTATTGCACTCTTAGTTTGGACTTTTGCTTCTTACTTGCACATTATTTTTCCCACTATTACACCAAAATCCGTAGCAAACAGTGGAGAAAAAGTGTAAGTATATATTCCGAAACAAAGTAATTTGAGATAACTATTTTTAAAAATCACGACAGATAATTTGAGCGTTGACGGATTGAATTGGTTATTGACAGATGGGAAGCCAAGTTGGAAGATTCAGGGCTAAGATTGGGACTTGTTGGAAATATATGCTTAACATTTCTATTTGTTCCAGTCACAAGAGGCTCATCTGTGTTACAAGTATTTGGTTTGACATCAGAAGCTAGTGTTAAATATCATATATGGCTTGGCCATATTGTAATGACTCTTTTTTCTGCTCATGGCATTTGTTACATTATCTATTGGGCTTCCACTCATCAATTGTCTGAGGTAATATACGATAGTCTGTAAAGTTGTTGTCATTGTAATTATCATACTGGTATTAGTAATTAATGATTGTTGATTGAAATGAAACAGATGCTGAAATGGGGAAAAACTGATATATCAAATTTGGCTGGTGAATTGGCATTGCTTTCTGGATTGGTGTTGTGGATAGCAACATTTCCTAAAATTAGGAGAAAGATGTTTGAACTCTTCTTCTACACTCATCATTTCTACATTCTCTTTGTCGTCTTCTTCGTCTTCCATGTTGGTGTTTCTTACGCTTGCATCATGCTTCCTGGTTTCTTCCTCTTCATGGTTGATCGATTCTTGAGATTCTTACAGTCACGATCAAATGTTCGTTTAGTCTCTGCTCGTGTTCTGCCATGTGAAACTCTTGAACTCAATTTCTCCAAGACTAAAGGTAAATTGATGAAAATTTCATAAATATTCAATTTTGTGACAAACAAGTCCATAACAATTTTGATCAATTTGTTTATGAATATTGTTGCAGGTTTAAGTTACACACCAACTAGCATCATGTTTGTGAATGTACCTAGCATTTCAAAATTGCAATGGCATCCTTTTACCATCACTTCAAGTAGTAATTTGGAGCCAGAGAAAATCAGTGTTGCCATTAAGGGTGAAGGAAGTTGGTCCAAAAAACTCTACCAGATGATCTCTTCCCCTAATTCTGTCGATCGTCTTAACGTCTCTGTTGAAGGACCTTATGGACCTCCTTCCACACATTTTCTAAGGTATGTATGAGTTATGACTAGTTCAAGTCGAATTTAATTCAGAGTTCGCGTACTACTACTATATGTTACAATGATAAACTAAAGTTCTGTTTTTGTTTTTTTGAAGGCATGATTTATTGGTTATGATAAGTGGAGGAAGTGGAATTACTCCTTTCATTTCCATCATTAGGGAGCTAATTCATACAAGTGAGTCACAAAAATGCAAGACACCAGAAATCCTACTTATTAGTGTGTTCAAGAATTCGGAAGATCTCACCATGTTGGACCTTCTCCTTCCTATATCTGGTGCTCCATCAGAAACTTGTAAACTGGGGCTACAAATCGAGGCTTTTGTAACGAGAGAAAAGCAACCAGTATCGACAGAAGACAAGAAGAATGTGAGGACTATATGGTTCAAGCCCAACCCATCTGATAAGCCTATCACTCCAATTCTTGGACAAAACAATTGGCTCTGGCTTGGTGCTATCATATCATGTTCCTTCCTCATTTTCTTGATTTCCTTGGGGGTCTTGAATAGATATTACATATATCCAATCGACAATAATACTAATGACATATTTTCGTATCCAATAAAGGCGGTGTTGAATATGCTAATCATTTGCATATCTATAGTCATCACAAGTAGTGCTGCATTTGTTTGGAACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAAGTAAGTTCTCGATCACAAAAGGATATTACTAATAATAACAAGTAACTCGTCATATCAAGCTTCATACATAACATGGAATTTTAGTTAGTTGAATTGTAAATAAGGTACATAACATCACAAATACGCAATATTAGAATGTCTTATTCAAATTGCTCAACTTTATGCAGGAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGTCCATCAGTTTCAGTTGGTGAGTTAGAGAATATAATGCATTCTATGCAATGGAG-AAAATAAGATGGAAGTTTTTTTGTTTGTTTGTGTGCTTATGCTTTGGTTGATTGAATTTTGCATGTAACATGCTTCCTTTGTACTGAGTAAATGTAAAAAGATACAGTTAATTCTGTTTT</genome_strand>
        <mrna_strand>GTCCTAAAGTTGTCTTTTTTTATTATAACAAAAAAATAAAAGTGAAAAAATGGCTCAAACATCCTCTTCCTCTCCTTCTCTTAAAGCTTCATCAAGTGTTACCAATGATCTTCAAGCAACTATAATGGCTCTAATACTAATTGTTACTATTGGGTATTTTCTACTTTTGATAGTAACACCAACTAATATGTATAGACAAATATGGACACCCAAGATTAAAGCTCACACTACCAACTCCACATACTTTGGAGCTCAAG...........................................................................................................................................................................................................GAAGGACTTTGTTGATGAACACATTTCCTCTCATATTTATTGCTGTCTTGGGATGTGTATACCTCCATTTATGGAAGAAATCCAATAATAAAAACATCAACAG..........................................................................................................................................ATTTGAGAAGAAACAAAAGTTGGCTATATGGAGGAGGCCAATAATCATGAAGGGGCTGGGAATTGTATCAAGAATAGAGCTTGGTTTTTTTGTGATGTTTATTGCACTCTTAGTTTGGACTTTTGCTTCTTACTTGCACATTATTTTTCCCACTATTACACCAAAATCCGTAGCAAACAGTGGAGAAAAAGT..................................................................................................ATGGGAAGCCAAGTTGGAAGATTCAGGGCTAAGATTGGGACTTGTTGGAAATATATGCTTAACATTTCTATTTGTTCCAGTCACAAGAGGCTCATCTGTGTTACAAGTATTTGGTTTGACATCAGAAGCTAGTGTTAAATATCATATATGGCTTGGCCATATTGTAATGACTCTTTTTTCTGCTCATGGCATTTGTTACATTATCTATTGGGCTTCCACTCATCAATTGTCTGAG.......................................................................................ATGCTGAAATGGGGAAAAACTGATATATCAAATTTGGCTGGTGAATTGGCATTGCTTTCTGGATTGGTGTTGTGGATAGCAACATTTCCTAAAATTAGGAGAAAGATGTTTGAACTCTTCTTCTACACTCATCATTTCTACATTCTCTTTGTCGTCTTCTTCGTCTTCCATGTTGGTGTTTCTTACGCTTGCATCATGCTTCCTGGTTTCTTCCTCTTCATGGTTGGTCGATTCTTGAGATTCTTACAGTCACGATCAAATGTTCGTTTAGTCTCTGCTCGTGTTCTGCCATGTGAAACTCTTGAACTCAATTTCTCCAAGACTAAAG..........................................................................................GTTTAAGTTACACACCAACTAGCATCATGTTTGTGAATGTACCTAGCATTTCAAAATTGCAATGGCATCCTTTTACCATCACTTCAAGTAGTAATTTGGAGCCAGAGAAAATCAGTGTTGCCATTAAGGGTGAAGGAAGTTGGTCCAAAAAACTCTACCAGATGATCTCCTCCCCTAATTCTGTCGATCGTCTTAACGTCTCTGTTGAAGGACCTTATGGACCTCCTTCCACACATTTTCTAAG..........................................................................................................GCATGATTTATTGGTTATGATAAGTGGAGGAAGTGGAATTACTCCTTTCATTTCCATCATTAGGGAGCTAATTCATACAAGTGAGTCACAAAAATGCAAGACACCAGAAATCCTACTTATTAGTGTGTTCAAGAATTCGGAAGATCTCACCATGTTGGACCTTCTCCTTCCTATATCTGGTGCTCCATCAGAAACTTGTAAACTGGGGCTACAAATCGAGGCTTTTGTAACGAGAGAAAAGCAACCAGTATCGACAGAAGACAAGAAGAATGTGAGGACTATATGGTTCAAGCCCAACCCATCTGATAAGCCTATCACTCCAATTCTTGGACAAAACAATTGGCTCTGGCTTGGTGCTATCATATCATGTTCCTTCCTCATTTTCCTGATTTCCTTGGGGGTCTTGAATAGATATTACATATATCCAATCGACAATAATACTAATGACATATTTTCGTATCCAATAAAGGCGGTGTTGAATATGCTAATCATTTGCATATCTATAGTCATCACAAGTAGTGCTGCATTTGTTTGGAACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAA.......................................................................................................................................................................GAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGTCCATCAGTTTCAGTTGGTGAGTTAGAGAATATAATGCATTCTATGCAATGGAGAAAAATAAGATGGAAGTTTTTTTGTTTGTTTGTGTGCTTATGCTTTGGTTGATTGAATTTTGCATGTAACATGCTTCCTTTGTACTGAGTAAATGTAAAAAGATACAGTTAATTCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590767" ref_strand="+" ref_description="SGN-U590767 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349817|emb|CAO39673.1| (e_value=7e-51) unnamed; (*ATH) AT1G01580.1 (e_value=3e-45)  Symbol: None | ferric-chelate reductase, putative, similar to ferric-chelate reductase (FRO1) (Pisum sativum) GI:15341529; contains Pfam profile: PF01794 ferric reductase like transmembrane component | chr1:209395-213041 FORWARD | Aliases: F22L4.12,... ; ">
      <seq>gatgtatataacaagttcactactactatatatttccaatttatattcaacaaaagctaattttgttacaagaaaaatggaggtgatgaataggagatcatcatcattttctgatggaaaaattagaatgatacaaggagcaatattagctttagcacttacaatatttcttgggaatttaatgatgtggattattatgccaacttttacatattatcaaaaatgggtccctgttcttgttgctgccaccaattccacattctttgatattcaaggtcccattatgatgaacttcacattcccaatcttattcatagctgttttgggttgtctttatgttcatctagagaagaaaaaaagtgatattgtcacttcatcatattgcaataaggattggttgaagatattgaaaaagccaaaaatcatcaaatcattaggaatagtgacatggatagaactattttttctagccatgtttattattctatgtgtttggtatttctcagcatttgtctattttcactatagtaccattactacttatgcagcaactaaaggagttgaagtgtggcaagcaagaatcgataggttggctttagtaatagggttaacagggaatatatgtttaacatttctattttatccagtaagtagaggctcttcaattttgcctcttttgggattaacttcagaaggcagcatcaaatatcatatatggttgggacatatggctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="18793" stop="21495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19093" g_stop="19367" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19368" i_stop="19824" i_length="457">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19825" g_stop="19933" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="384" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19934" i_stop="20011" i_length="78">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20012" g_stop="20194" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="567" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20195" i_stop="21026" i_length="832">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21027" g_stop="21195" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="736" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U590767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19093" e_stop="19367"/>
          <exon e_start="19825" e_stop="19933"/>
          <exon e_start="20012" e_stop="20194"/>
          <exon e_start="21027" e_stop="21195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTATATAACAAGTTCACTACTACTATATATTTCCAATTTATATTCAACAAAAGCTAATTTTGTTACAAGAAAAATGGAGGTGATGAATAGGAGATCATCATCATTTTCTGATGGAAAAATTAGAATGATACAAGGAGCAATATTAGCTTTAGCACTTACAATATTTCTTGGGAATTTAATGATGTGGATTATTATGCCAACTTTTACATATTATCAAAAATGGGTCCCTGTTCTTGTTGCTGCCACCAATTCCACATTCTTTGATATTCAAGGTATTTTAATTTTAATTATGTATTCCATTTTCCCATCCTCGAGGCGTGAATTTAGGATTTGAATATTATAAAATTGAGTTTGGAAGTATACTAGTACTAAAAACACGCGAATTTCTGATGGAAATTTTCGTCCTTGGAGAAAAATTGTTTGGCAATTTGCGTGTTTTTAATAGTGTATGTGTATAAGGTTCGTCAGTGGATCTTTTAATATATCTGTGTATAAGATTTAAATCAAAATTACATACTGAGTTTGAATGAGCTCGTCAGTACTTAATAACTACATTCACTCTTGCCTTTTTGGAAATTTTCTAATAAAATTAGAACGACACAGAAAATAAACCTAGCAAGAAAATTGGACTTCCTTTATTTTCTTTTGCATGTTTCTATTTTTTTTTCATGTCGAGATGAGGGTAAATAAAAGAAATTATAATTTTGATTTTTGGTGTTATTTTTACAGGTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTGGTATATGATATATATATTTTTTTATTTTGGTTTGTGATTATGATATATTTAATTGTTTTTATTGTTGTTTAATTTCAGCAATAAGGATTGGTTGAAGATATTGAAAAAGCCAAAAATCATCAAATCATTAGGAATAGTGACATGGATAGAACTATTTTTTCTAGCCATGTTTATTATTCTATGTGTTTGGTATTTCTCAGCATTTGTCTATTTTCACTATAGTACCATTACTACTTATGCAGCAACTAAAGGAGTTGAAGTGTAAGTTTCTCCGATTCGGTTTCGATTATATTATCTGTCTTTTAAGATTTTTACACGCAATACTAAATCTTTATTTATTAGTGACCAATTTTTTAAAGTAAAATAAGTCAAAAACCAAAGTAGGATATCCTGATATATCAACCACTTATAAATTTTAGTTTTTTTGACTTATATAAGTTTAGTACTATAGTATTTAATAGTGTCCCACTTCATCAATTAATACTTCACTAATTAGAGAATTATGGATGAATTAATTTAGAAAAAAGCGTGTAAATTAAATTATTTTTGCTTGTCTATAAAGTCAAATATTATTTTGGAATAAGTTTTAATTTTTCAAACGACTTACATTTGAGACGGAAGAGAGTGACAATAAATGAATGAATATTATGATGGTTCACTATTATATTCACGAAGAATACTTACGTAGTCAAATATTTTGAAACGAGTTTAATTTGTTAAACGACTAATATTTGAAATTGAAAAACGTGATAATAATTGAAGGAACATTGTTATTATATTCATGAATACTTAAATAGTCAAATATTTTGAAACAAGTTCAATTTATTAAATGACTAATATTTGAGACCGAAAAGAGTGAATGAATTATATTTATGAATATTTAAGTAGTCTTGACTCAAGTGTAAAAATTTAATTTTTAATTTTTTATATCACTTTATTAATCACTTATTTTATTTTGCAATATTAGTTTTGAGGGATTGTGATAATTGGTCATAATATTCACAATCTTACTTCTTCCAAGACCTAATTTTATTTTTGTTTCTTCTGATCGTTGAACCTGATCGACTAGACTTTTTTTTGTCAAATTTTGTAGGTGGCAAGCAAGAATCGATAGGTTGGCTTTAGTAATAGGGTTAACAGGGAATATATGTTTAACATTTCTATTTTATCCAGTAAGTAGAGGCTCTTCAATTTTGCCTCTTTTGGGATTAACTTCAGAAGGCAGCATCAAATATCATATATGGTTGGGACATATGGCTATG</genome_strand>
        <mrna_strand>GATGTATATAACAAGTTCACTACTACTATATATTTCCAATTTATATTCAACAAAAGCTAATTTTGTTACAAGAAAAATGGAGGTGATGAATAGGAGATCATCATCATTTTCTGATGGAAAAATTAGAATGATACAAGGAGCAATATTAGCTTTAGCACTTACAATATTTCTTGGGAATTTAATGATGTGGATTATTATGCCAACTTTTACATATTATCAAAAATGGGTCCCTGTTCTTGTTGCTGCCACCAATTCCACATTCTTTGATATTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTG..............................................................................CAATAAGGATTGGTTGAAGATATTGAAAAAGCCAAAAATCATCAAATCATTAGGAATAGTGACATGGATAGAACTATTTTTTCTAGCCATGTTTATTATTCTATGTGTTTGGTATTTCTCAGCATTTGTCTATTTTCACTATAGTACCATTACTACTTATGCAGCAACTAAAGGAGTTGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGCAAGAATCGATAGGTTGGCTTTAGTAATAGGGTTAACAGGGAATATATGTTTAACATTTCTATTTTATCCAGTAAGTAGAGGCTCTTCAATTTTGCCTCTTTTGGGATTAACTTCAGAAGGCAGCATCAAATATCATATATGGTTGGGACATATGGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579766" ref_strand="+" ref_description="SGN-U579766 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157349817|emb|CAO39673.1| (e_value=5e-40) unnamed; (*ATH) AT1G01580.1 (e_value=4e-34)  Symbol: None | ferric-chelate reductase, putative, similar to ferric-chelate reductase (FRO1) (Pisum sativum) GI:15341529; contains Pfam profile: PF01794 ferric reductase like transmembrane component | chr1:209395-213041 FORWARD | Aliases: F22L4.12,... ; ">
      <seq>ctactactatatatttccaatttatattcaacaaaagctaattttgttacaagaaaaatggaggtgatgaataggagatcatcatcattttctgatggaaaaattagaatgatacaaggagcaatattagctttagcacttacaatatttcttgggaatttaatgatgtggattattatgccaacttttacatattatcaaaaatgggtccctgttcttgttgctgccaccaattccacattctttgatattcaaggtcccattatgatgaacttcacattcccaatcttattcatagctgttttgggttgtctttatgttcatctagagaagaaaaaaagtgatattgtcacttcatcatattgcaataaggattggttgaagatattgaaaaagccaaaaatcatcaaatcattaggaatagtgacatggatagaactattttttctagccatgtttattattctatgtgtttggtatttctcagcatttgtctattttcactatagtaccattactacttatgcagcaactaaaggagttgaagtgtggcaagcaagaatcgataggttggctttagtaatagggttaacagggaatatatgtttaacatttctattttatccagtaagtagaggctcttcaattttgcctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="18812" stop="21437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19112" g_stop="19367" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19368" i_stop="19824" i_length="457">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19825" g_stop="19933" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="365" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19934" i_stop="20011" i_length="78">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20012" g_stop="20194" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="548" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20195" i_stop="21026" i_length="832">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21027" g_stop="21137" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="659" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U579766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19112" e_stop="19367"/>
          <exon e_start="19825" e_stop="19933"/>
          <exon e_start="20012" e_stop="20194"/>
          <exon e_start="21027" e_stop="21137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTACTATATATTTCCAATTTATATTCAACAAAAGCTAATTTTGTTACAAGAAAAATGGAGGTGATGAATAGGAGATCATCATCATTTTCTGATGGAAAAATTAGAATGATACAAGGAGCAATATTAGCTTTAGCACTTACAATATTTCTTGGGAATTTAATGATGTGGATTATTATGCCAACTTTTACATATTATCAAAAATGGGTCCCTGTTCTTGTTGCTGCCACCAATTCCACATTCTTTGATATTCAAGGTATTTTAATTTTAATTATGTATTCCATTTTCCCATCCTCGAGGCGTGAATTTAGGATTTGAATATTATAAAATTGAGTTTGGAAGTATACTAGTACTAAAAACACGCGAATTTCTGATGGAAATTTTCGTCCTTGGAGAAAAATTGTTTGGCAATTTGCGTGTTTTTAATAGTGTATGTGTATAAGGTTCGTCAGTGGATCTTTTAATATATCTGTGTATAAGATTTAAATCAAAATTACATACTGAGTTTGAATGAGCTCGTCAGTACTTAATAACTACATTCACTCTTGCCTTTTTGGAAATTTTCTAATAAAATTAGAACGACACAGAAAATAAACCTAGCAAGAAAATTGGACTTCCTTTATTTTCTTTTGCATGTTTCTATTTTTTTTTCATGTCGAGATGAGGGTAAATAAAAGAAATTATAATTTTGATTTTTGGTGTTATTTTTACAGGTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTGGTATATGATATATATATTTTTTTATTTTGGTTTGTGATTATGATATATTTAATTGTTTTTATTGTTGTTTAATTTCAGCAATAAGGATTGGTTGAAGATATTGAAAAAGCCAAAAATCATCAAATCATTAGGAATAGTGACATGGATAGAACTATTTTTTCTAGCCATGTTTATTATTCTATGTGTTTGGTATTTCTCAGCATTTGTCTATTTTCACTATAGTACCATTACTACTTATGCAGCAACTAAAGGAGTTGAAGTGTAAGTTTCTCCGATTCGGTTTCGATTATATTATCTGTCTTTTAAGATTTTTACACGCAATACTAAATCTTTATTTATTAGTGACCAATTTTTTAAAGTAAAATAAGTCAAAAACCAAAGTAGGATATCCTGATATATCAACCACTTATAAATTTTAGTTTTTTTGACTTATATAAGTTTAGTACTATAGTATTTAATAGTGTCCCACTTCATCAATTAATACTTCACTAATTAGAGAATTATGGATGAATTAATTTAGAAAAAAGCGTGTAAATTAAATTATTTTTGCTTGTCTATAAAGTCAAATATTATTTTGGAATAAGTTTTAATTTTTCAAACGACTTACATTTGAGACGGAAGAGAGTGACAATAAATGAATGAATATTATGATGGTTCACTATTATATTCACGAAGAATACTTACGTAGTCAAATATTTTGAAACGAGTTTAATTTGTTAAACGACTAATATTTGAAATTGAAAAACGTGATAATAATTGAAGGAACATTGTTATTATATTCATGAATACTTAAATAGTCAAATATTTTGAAACAAGTTCAATTTATTAAATGACTAATATTTGAGACCGAAAAGAGTGAATGAATTATATTTATGAATATTTAAGTAGTCTTGACTCAAGTGTAAAAATTTAATTTTTAATTTTTTATATCACTTTATTAATCACTTATTTTATTTTGCAATATTAGTTTTGAGGGATTGTGATAATTGGTCATAATATTCACAATCTTACTTCTTCCAAGACCTAATTTTATTTTTGTTTCTTCTGATCGTTGAACCTGATCGACTAGACTTTTTTTTGTCAAATTTTGTAGGTGGCAAGCAAGAATCGATAGGTTGGCTTTAGTAATAGGGTTAACAGGGAATATATGTTTAACATTTCTATTTTATCCAGTAAGTAGAGGCTCTTCAATTTTGCCTCTTTT</genome_strand>
        <mrna_strand>CTACTACTATATATTTCCAATTTATATTCAACAAAAGCTAATTTTGTTACAAGAAAAATGGAGGTGATGAATAGGAGATCATCATCATTTTCTGATGGAAAAATTAGAATGATACAAGGAGCAATATTAGCTTTAGCACTTACAATATTTCTTGGGAATTTAATGATGTGGATTATTATGCCAACTTTTACATATTATCAAAAATGGGTCCCTGTTCTTGTTGCTGCCACCAATTCCACATTCTTTGATATTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTG..............................................................................CAATAAGGATTGGTTGAAGATATTGAAAAAGCCAAAAATCATCAAATCATTAGGAATAGTGACATGGATAGAACTATTTTTTCTAGCCATGTTTATTATTCTATGTGTTTGGTATTTCTCAGCATTTGTCTATTTTCACTATAGTACCATTACTACTTATGCAGCAACTAAAGGAGTTGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGCAAGAATCGATAGGTTGGCTTTAGTAATAGGGTTAACAGGGAATATATGTTTAACATTTCTATTTTATCCAGTAAGTAGAGGCTCTTCAATTTTGCCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593643" ref_strand="+" ref_description="SGN-U593643 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ccgggccccccctcgaggcgtgaatttaggatttgaatattataaaattgagtttggaagtatactagtactaaaaacacgcgaatttctgatggaaattttcgtccttggagaaaaattgtttggcaatttgcgtgtttttaatagtgtatgtgtataaggttcgtcagtggatcttttaatatatctgtgtataagatttaaatcaaaattacatactgagtttgaatgagctcgtcagtacttaataactacattcactcttgcctttttggaaattttctaataaaattagaacgacacagaaaataaacctagcaagaaaattggacttcctttattttcttttgcatgtttctattttttttttcatgtcgagatgagggtaaataaaagaaattataattttgatttttggtgttatttttacaggtcccattatgatgaacttcacattcccaatcttattcatagctgttttgggttgtctttatgttcatctagagaagaaaaaaagtgatattgtcacttcatcatattggtatatgatatatatatttttttattttggtttgtgattatgatatatttaattgtttttattgttgtttaatttcagcaataaggattggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="19099" stop="20327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19394" g_stop="20027" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U593643" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19394" e_stop="20027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCCATCCTCGAGGCGTGAATTTAGGATTTGAATATTATAAAATTGAGTTTGGAAGTATACTAGTACTAAAAACACGCGAATTTCTGATGGAAATTTTCGTCCTTGGAGAAAAATTGTTTGGCAATTTGCGTGTTTTTAATAGTGTATGTGTATAAGGTTCGTCAGTGGATCTTTTAATATATCTGTGTATAAGATTTAAATCAAAATTACATACTGAGTTTGAATGAGCTCGTCAGTACTTAATAACTACATTCACTCTTGCCTTTTTGGAAATTTTCTAATAAAATTAGAACGACACAGAAAATAAACCTAGCAAGAAAATTGGACTTCCTTTATTTTCTTTTGCATGTTTCTA-TTTTTTTTTCATGTCGAGATGAGGGTAAATAAAAGAAATTATAATTTTGATTTTTGGTGTTATTTTTACAGGTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTGGTATATGATATATATATTTTTTTATTTTGGTTTGTGATTATGATATATTTAATTGTTTTTATTGTTGTTTAATTTCAGCAATAAGGATTGGTTG</genome_strand>
        <mrna_strand>CCGGGCCCCCCCTCGAGGCGTGAATTTAGGATTTGAATATTATAAAATTGAGTTTGGAAGTATACTAGTACTAAAAACACGCGAATTTCTGATGGAAATTTTCGTCCTTGGAGAAAAATTGTTTGGCAATTTGCGTGTTTTTAATAGTGTATGTGTATAAGGTTCGTCAGTGGATCTTTTAATATATCTGTGTATAAGATTTAAATCAAAATTACATACTGAGTTTGAATGAGCTCGTCAGTACTTAATAACTACATTCACTCTTGCCTTTTTGGAAATTTTCTAATAAAATTAGAACGACACAGAAAATAAACCTAGCAAGAAAATTGGACTTCCTTTATTTTCTTTTGCATGTTTCTATTTTTTTTTTCATGTCGAGATGAGGGTAAATAAAAGAAATTATAATTTTGATTTTTGGTGTTATTTTTACAGGTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTGGTATATGATATATATATTTTTTTATTTTGGTTTGTGATTATGATATATTTAATTGTTTTTATTGTTGTTTAATTTCAGCAATAAGGATTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600589" ref_strand="+" ref_description="SGN-U600589 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caccagatcacaatccctcaaaactaatattgcaaaataaaataagtgattaataaagtgatataaaaaattaaaaattaaatttttacacttgagtcaagactacttaaatattcataaatataattcattcactcttttcggtctcaaatattagtcatttaataaattgaacttgtttcaaaatatttgactatttaagtattcatgaatataataacaatgttccttcaattattatcacgtttttcaatttcaaatattagtcgtttaacaaattaaactcgtttcaaaatatttgactacgtaagtattcttcgtgaatataatagtgaaccatcataatattcattcatttattgtcactctcttccgtctcaaatgtaagtcgtttgaaaaattaaaacttattccaaaataatatttgactttatagacaagcaaaaataatttaatttacacgcttttttctaaattaattcatccataattctctaattagtgaagtattaattgatgaagtgggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="21217" stop="20094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20925" g_stop="20394" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U600589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20925" e_stop="20394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAATTATCACAATCCCTCAAAACTAATATTGCAAAATAAAATAAGTGATTAATAAAGTGATATAAAAAATTAAAAATTAAATTTTTACACTTGAGTCAAGACTACTTAAATATTCATAAATATAATTCATTCACTCTTTTCGGTCTCAAATATTAGTCATTTAATAAATTGAACTTGTTTCAAAATATTTGACTATTTAAGTATTCATGAATATAATAACAATGTTCCTTCAATTATTATCACGTTTTTCAATTTCAAATATTAGTCGTTTAACAAATTAAACTCGTTTCAAAATATTTGACTACGTAAGTATTCTTCGTGAATATAATAGTGAACCATCATAATATTCATTCATTTATTGTCACTCTCTTCCGTCTCAAATGTAAGTCGTTTGAAAAATTAAAACTTATTCCAAAATAATATTTGACTTTATAGACAAGCAAAAATAATTTAATTTACACGCTTTTTTCTAAATTAATTCATCCATAATTCTCTAATTAGTGAAGTATTAATTGATGAAGTGGGACAC</genome_strand>
        <mrna_strand>CACCAG--ATCACAATCCCTCAAAACTAATATTGCAAAATAAAATAAGTGATTAATAAAGTGATATAAAAAATTAAAAATTAAATTTTTACACTTGAGTCAAGACTACTTAAATATTCATAAATATAATTCATTCACTCTTTTCGGTCTCAAATATTAGTCATTTAATAAATTGAACTTGTTTCAAAATATTTGACTATTTAAGTATTCATGAATATAATAACAATGTTCCTTCAATTATTATCACGTTTTTCAATTTCAAATATTAGTCGTTTAACAAATTAAACTCGTTTCAAAATATTTGACTACGTAAGTATTCTTCGTGAATATAATAGTGAACCATCATAATATTCATTCATTTATTGTCACTCTCTTCCGTCTCAAATGTAAGTCGTTTGAAAAATTAAAACTTATTCCAAAATAATATTTGACTTTATAGACAAGCAAAAATAATTTAATTTACACGCTTTTTTCTAAATTAATTCATCCATAATTCTCTAATTAGTGAAGTATTAATTGATGAAGTGGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582746" ref_strand="+" ref_description="SGN-U582746 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|37903683|gb|AAP46144.1| (e_value=2e-132) ferric-chelate reductase [Lycopersicon esculentum]; (*ATH) AT1G01580.1 (e_value=2e-105)  Symbol: None | ferric-chelate reductase, putative, similar to ferric-chelate reductase (FRO1) (Pisum sativum) GI:15341529; contains Pfam profile: PF01794 ferric reductase like transmembrane component | chr1:209395-213041 FORWARD | Aliases: F22L4.12,... ; (*SWP) sp|Q9Y5S8|NOX1_HUMAN (e_value=2e-19) NADPH oxidase 1 OS=Homo sapiens GN=NOX1; ">
      <seq>ccacactggaatgttctatgcctgcattatgcttcctggtttcttcctcttcttgatcgatcgatacttgagattcttgcaatccaagcaacaagttcgtttgatttcagcccgagttttgacttgtgaaactgttgaactcaacttctccaaaatatcaggtttggagtactctcctacgagcattatgttcctaaacgtgccaagcatatccaaattgcagtggcatccattcactgtaacttcaaacagtaacctagaatcagatacaattagtgttgtcatcaaatgtgaaggaagctggactaagaagctttacagtgtcatgtcattgcctaaaccagtcgatcgtcttgatgtttctgttgaaggaccctatggacctgcttccactcatttcctaaggcatgatacattggtgttgatcagtggagggagtggaataactccattcatttccatcgtcagagagctgattcatatgagctcaacactgaaatgcaaaactccaaagatcttattagttagtgtgttcaggaatacttcacaactctctatgttagaccttctttatcctatagcaggcactccttcaggatgttcttctaatcttgacctacaagttgaggcttatataaccagagagattgaaccagcacaagaaaaatccgaacccctacggaccattttgttcaaacctgaccactctgatgcacccataacccccattttaggccagaacaattggctctggcttgcagctataatatcgtcttcatttgctttgtaccttctatttgtgggacttctttaccaatactatgtttaccctatggaccatggtactaaccaggtattcccataccacacaagggctttattcaacatgttgtttatagcagctgctatagtaattacagcaagtgcagccttcctatggaacaagaagaaaagtgctagggaaactaagcagattcaggacatggcagattcagcaaaatctttgaactcattaatagcttatgctgatcaagagctagaaagtcttccccaacagtcgctcgacaaatctatcaagacacattatggccacagacctgatctcaagcgaatattgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="24259" stop="26161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24559" g_stop="24719" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24720" i_stop="24801" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24802" g_stop="25045" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="405" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25046" i_stop="25145" i_length="100">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25146" g_stop="25849" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="1109" r_length="704" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25850" i_stop="25945" i_length="96">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25946" g_stop="25958" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1122" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U582746" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1122</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24559" e_stop="24719"/>
          <exon e_start="24802" e_stop="25045"/>
          <exon e_start="25146" e_stop="25849"/>
          <exon e_start="25946" e_stop="25958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACTGGAATGTTCTATGCCTGCATTATGCTTCCTGGTTTCTTCCTCTTCTTGATCGATCGATACTTGAGATTCTTGCAATCCAAGCAACAAGTTCGTTTGATTTCAGCCCGAGTTTTGACTTGTGAAACTGTTGAACTCAACTTCTCCAAAATATCAGGTTAGCTACATTTCCATCTCTCATTTTCCAGGTTACAGATATCAGTTTTTATGGACAGACGATTACTTGTTCTAATTTGTAGGTTTGGAGTACTCTCCTACGAGCATTATGTTCCTAAACGTGCCAAGCATATCCAAATTGCAGTGGCATCCATTCACTGTAACTTCAAACAGTAACCTAGAATCAGATACAATTAGTGTTGTCATCAAATGTGAAGGAAGCTGGACTAAGAAGCTTTACAGTGTCATGTCATTGCCTAAACCAGTCGATCGTCTTGATGTTTCTGTTGAAGGACCCTATGGACCTGCTTCCACTCATTTCCTAAGGTCAGATATGTTTTACAGTTATCAGTGTGAAGATTTTTTACTCGAGTCGATGTAGTTTCACTATGATATTTGGTGATGGTGTGGTCAATTTTGATGACAGGCATGATACATTGGTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTACAGCAAGTGCAGCCTTCCTATGGAACAAGAAGAAAAGTGCTAGGGAAACTAAGCAGATTCAGGACATGGCAGATTCAGCAAAATCTTTGAACTCATTAATAGCTTATGCTGATCAAGAGCTAGAAAGTCTTCCTCAACAGTCGCTCGACAAATCTATCAAGACACATTATGGCCACAGACCTGATCTCAAGCGTAATTACTACAATATCTTTGCATAATCAGAACTACTACGTAGTACTTCGTTTCCAAACTCTCTATGCTTAGTAACTAAATGAAATTCTCTTGCAGGAATATTGCTAGA</genome_strand>
        <mrna_strand>CCACACTGGAATGTTCTATGCCTGCATTATGCTTCCTGGTTTCTTCCTCTTCTTGATCGATCGATACTTGAGATTCTTGCAATCCAAGCAACAAGTTCGTTTGATTTCAGCCCGAGTTTTGACTTGTGAAACTGTTGAACTCAACTTCTCCAAAATATCAG..................................................................................GTTTGGAGTACTCTCCTACGAGCATTATGTTCCTAAACGTGCCAAGCATATCCAAATTGCAGTGGCATCCATTCACTGTAACTTCAAACAGTAACCTAGAATCAGATACAATTAGTGTTGTCATCAAATGTGAAGGAAGCTGGACTAAGAAGCTTTACAGTGTCATGTCATTGCCTAAACCAGTCGATCGTCTTGATGTTTCTGTTGAAGGACCCTATGGACCTGCTTCCACTCATTTCCTAAG....................................................................................................GCATGATACATTGGTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTACAGCAAGTGCAGCCTTCCTATGGAACAAGAAGAAAAGTGCTAGGGAAACTAAGCAGATTCAGGACATGGCAGATTCAGCAAAATCTTTGAACTCATTAATAGCTTATGCTGATCAAGAGCTAGAAAGTCTTCCCCAACAGTCGCTCGACAAATCTATCAAGACACATTATGGCCACAGACCTGATCTCAAGC................................................................................................GAATATTGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603701" ref_strand="+" ref_description="SGN-U603701 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aggaagtttcagaccttgtttagtctaatttctcagacaaatacagcttctattcaaatcccatgaaccttatttcctcttccaaaggctacttacaataccttacatattatattcaacaaaagtaatgttatctggggcaccatacccagatacctattttaacacacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="26648" stop="25871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26348" g_stop="26171" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U603701" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26348" e_stop="26171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTTTCAGACCTTGTTTAGTCTAATTTCTCAGACAAATACAGCTTCTATTCAAATCCCATGAACCTTATTTCCTCTTCCAAAGGCTACTTACAATACCTTACATATTATATTCAACAAAAAGTAATGTTATCTTGGGCAACCATACCCAGAATACCTATTTTAAACACACATAT</genome_strand>
        <mrna_strand>AGGAAGTTTCAGACCTTGTTTAGTCTAATTTCTCAGACAAATACAGCTTCTATTCAAATCCCATGAACCTTATTTCCTCTTCCAAAGGCTACTTACAATACCTTACATATTATATTCAAC-AAAAGTAATGTTATCTGGGGC-ACCATACCCAG-ATACCTATTTT-AACACACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569501" ref_strand="+" ref_description="SGN-U569501 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|87162909|gb|ABD28704.1| (e_value=2e-61) WD40-like; (*ATH) AT5G28350.1 (e_value=2e-57) | Symbol: None | expressed protein | chr5:10320143-10326949 FORWARD | Aliases: F21B23.3, F21B23_3; ">
      <seq>gcacatgttgcttctgttaagaatattttagaaagtcatgcaagctatttgatgtctggaaaagaactgtcaaagctcgttgcatttgtaaagggcacgcagtttgatcttgtggaatatttgcagcgagaaagatatggaagtgctcgtttggacaactttgcttcaggctttgaactgattgggcaaaagcttcagatggaaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaagttcaaagagtggattgtagtattggccacacttttgaggcggtctgaggtcttgtttgatttatttcagcatgatttacgcttgtggaaagcatatagcattactttaaagacccatccatcttttgtccaataccatgacttgcttgaaagtttggatgaaaaactttcatccacttcaaatttagaagaaaaatgagctctctggatgtaaagagcaccgttggtcagctttgctagaaaatggttaaaagagcttccagtgagatcttctacttcaagctttaaccccaccaacttgaaatcagcataaatgtctactgctctattgggaagggggttgagcggctctgcagatgagatttttggttcctgttctactttacccaactgtgtcctgcagaaatttattttgtagataggcgtatcattgctattagttctctttggtttccatggtcctgtttctttttcatgatttatagtttgtatcaacttctagctttttcaacaagggtgtggggtgatcataatgaaaagggacacctcttgtatgaaagatctgatcttccgatgaatagagaatagaaaagattttgtgcattactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="28734" stop="26476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28434" g_stop="28321" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28244" g_stop="28167" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="192" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27715" g_stop="27599" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="309" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.583" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27414" g_stop="27352" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="372" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27351" i_stop="27274" i_length="78">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27273" g_stop="26776" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="870" r_length="498" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U569501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28434" e_stop="28321"/>
          <exon e_start="28244" e_stop="28167"/>
          <exon e_start="27715" e_stop="27599"/>
          <exon e_start="27414" e_stop="27352"/>
          <exon e_start="27273" e_stop="26776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACATGTTGCTTCTGTTAAGAATATTTTAGAAAGTCATGCAAGCTATTTGATGTCTGGAAAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTGGTATGATTGACAAAAAAATCAGGTTGTATCTTATTATGTTATTAAAAACAGATCATGTGATATAAATGTCTTGCAGGAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAGGTACTAACAAGTATTGCTTGTGAACGATATTTTGAATGCCACAAATGTATCATCATAATAGATGTTTCATATCAGATGGATGATAGGGTGAATTATGTCCACAAACTATTTTAAGCTCTTGCATCACAAGGGGCATTTGTCTCCAGAGAAAATGAGAAGTTTCTACTTCATGATCAAGTTATGAGTTTATTGATTTTTGTGTTTATAAAAGTACTCCTAAATTAATTTCAATCTCTTGGTTTCATGCTTTGTTAGTGTTCCTTATTTATGTCCATAGATGTTCCTGTTCATGTAACAACTTTTGACTTATGCTAATGATGCCCGAATTTCTTTTTTAAGATGTAATTCTGTTAATATGTTTGCTGATATGCATTCTTAAAGTATGTTCAGCTATAACTGTTGTTGAACTTAAAGACTCATACTGATAATCTTGTTTCGTTTGAATCATCAGCTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAGGTTTGGCTAACTTCCTTTAACTGGATATAGGATACTACAGATATGTTGCCTTAACTACATGAAAAATGAGTTGCCATCAGTTTTACTGTGTTCCCATACGGAAGAGCCTTAAATTCTGCTTATTTTGAGAATTGCTTTTATTAGTTGCAACTCACACGAGGTTCCTTTTGTTATTTTTGCTTAGGTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGCATTACTGC</genome_strand>
        <mrna_strand>GCACATGTTGCTTCTGTTAAGAATATTTTAGAAAGTCATGCAAGCTATTTGATGTCTGGAAAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTG............................................................................GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTTTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG........................................................................................................................................................................................GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAG..............................................................................ACCCATCCATCTTTTGTCCAATACCATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGCGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAAAAGATTTTGTGCATTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594920" ref_strand="+" ref_description="SGN-U594920 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87162909|gb|ABD28704.1| (e_value=6e-42) WD40-like; (*ATH) AT5G28350.1 (e_value=4e-39) | Symbol: None | expressed protein | chr5:10320143-10326949 FORWARD | Aliases: F21B23.3, F21B23_3; ">
      <seq>gaagaactgtcaaagctcgttgcatttgtaaagggcacgccagtttgatcttgtggaatatttgcagcgagaaagatatggaagtgctcgtctggacaactttgcttcaggctttgaactgattgggcaaaagcttcagatggaaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaagttcaaagagtggattgtagtattggccacacttttgaggcggtctgaggtcttgtttgatttatttcagcatgatttacgcttgtggaaagcatatagcattactttaaaggtaaatttgatacattatttctttggttacattgactttatttgtgcatcttactgtggttttcctgttcatcttcagacccatccatcttttgtccaatacgatgacttgcttgaaagtttggatgaaaaactttcatccacttcaaatttagaagaaaaatgagctctctggatgtaaagagcaccgttggtcagctttgctagaaaatggttaaaagagcttccagtgagatcttctacttcaagctttaaccccaccaacttgaaatcagcataaatgtctactgctctattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="28673" stop="26753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28374" g_stop="28321" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76">
            <donor d_prob="0.888" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28244" g_stop="28167" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27715" g_stop="27599" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="250" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.583" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27414" g_stop="27053" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="612" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U594920" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28374" e_stop="28321"/>
          <exon e_start="28244" e_stop="28167"/>
          <exon e_start="27715" e_stop="27599"/>
          <exon e_start="27414" e_stop="27053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACG-CAGTTTGATCTTGTGGTATGATTGACAAAAAAATCAGGTTGTATCTTATTATGTTATTAAAAACAGATCATGTGATATAAATGTCTTGCAGGAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAGGTACTAACAAGTATTGCTTGTGAACGATATTTTGAATGCCACAAATGTATCATCATAATAGATGTTTCATATCAGATGGATGATAGGGTGAATTATGTCCACAAACTATTTTAAGCTCTTGCATCACAAGGGGCATTTGTCTCCAGAGAAAATGAGAAGTTTCTACTTCATGATCAAGTTATGAGTTTATTGATTTTTGTGTTTATAAAAGTACTCCTAAATTAATTTCAATCTCTTGGTTTCATGCTTTGTTAGTGTTCCTTATTTATGTCCATAGATGTTCCTGTTCATGTAACAACTTTTGACTTATGCTAATGATGCCCGAATTTCTTTTTTAAGATGTAATTCTGTTAATATGTTTGCTGATATGCATTCTTAAAGTATGTTCAGCTATAACTGTTGTTGAACTTAAAGACTCATACTGATAATCTTGTTTCGTTTGAATCATCAGCTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAGGTTTGGCTAACTTCCTTTAACTGGATATAGGATACTACAGATATGTTGCCTTAACTACATGAAAAATGAGTTGCCATCAGTTTTACTGTGTTCCCATACGGAAGAGCCTTAAATTCTGCTTATTTTGAGAATTGCTTTTATTAGTTGCAACTCACACGAGGTTCCTTTTGTTATTTTTGCTTAGGTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGG</genome_strand>
        <mrna_strand>GAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCCAGTTTGATCTTGTG............................................................................GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG........................................................................................................................................................................................GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603913" ref_strand="+" ref_description="SGN-U603913 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147860649|emb|CAN81454.1| (e_value=8e-82) hypothetical; (*ATH) AT5G28350.1 (e_value=6e-78) | Symbol: None | expressed protein | chr5:10320143-10326949 FORWARD | Aliases: F21B23.3, F21B23_3; ">
      <seq>tcaatcatgactgcaaagagctttcctgcatcaatgcgttttattcctgatcggctccctagagaaggcattgcaggaaatggtggtctgccaacttctttggatctgtcagtccgagagcctacccgatgcttaatactaaggacaaatggagagctttcacttcttgatttggatgaggggagagaaagagaacttacggactccgtagagttgttttgggttacctgtggtcagtcagaggagaaagcaagcttgattgaggaagtttcatggttagactatggccaccgtggaatgcaggtttggtatccatctcctggtgctgatgtttttaagcaagaggattttttgcagttggatccggagctggattttgatcgtgaggtttatcctcttggtttgcttccaaatgctggagttgtagttggcgtctcccagagaatgtcattttccgcatgtacagagtttccatgtttcgagccatcacctcaagctcagactattttgcattgcctacttcgacatcttctacagaaggataaaaaagaagaagctctaagattggcacaattatcagctgagaaacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="34467" stop="30380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34167" g_stop="34040" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34039" i_stop="33904" i_length="136">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33903" g_stop="33729" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="303" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33728" i_stop="33633" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33632" g_stop="33579" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="357" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33578" i_stop="32802" i_length="777">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32801" g_stop="32622" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="537" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32621" i_stop="30737" i_length="1885">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30736" g_stop="30681" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="593" r_length="56" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U603913" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34167" e_stop="34040"/>
          <exon e_start="33903" e_stop="33729"/>
          <exon e_start="33632" e_stop="33579"/>
          <exon e_start="32801" e_stop="32622"/>
          <exon e_start="30736" e_stop="30681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCATGACTGCAAAGAGCCATCCTGCATCAATGCGTTTTATTCCTGATCAGCTCCCAAGAGAAGGCATTGCAGGAAATGGTGGTCTGCCAACTTCTTTGGATCTGTCAGTCCGAGAGCCTACCCGGTATGTACTTATTGCTGAATGTTTACATCTCTGAGTTGGACCCTGCATTGCTGCATGCTAGTATCGATGTGTACTGATAAGTGATATGTGCTTTAGGACTTTGTTGTCATTTTCTAGTTCTTGCATGTACTTTCAGATGCTTAATACTAAGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGAGAACTTACGGACTCCGTAGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCAAGCTTGATTGAGGAAGTTTCATGGTTAGACTATGGCCACCGTGGAATGCAGGTAACAGTTTTCTTTTACACTTAGAGTTATTTTGTACAATTCTGTACTTACCTTACATGTCTGATTTATATACTGGTTAAAAGCTCCTTATTACAGGTTTGGTATCCATCTCCTGGTGCTGATGTTTTTAAGCAAGAGGATTTTTTGCAGGTATTCAAGTTGTTATTGCTGTAGTCCACATAGTGTTTTGTTTTTGATTTTACACTATCTATAATTGTCCATATTTTAGTTATTAGTAGCTCTTTAGTGATTCAAGAAATATAGCCTTTGGTCTGTTTTGATATGCACTGGTCTATGTGAAAAGTTTGCTTCCCTTTTCTTTCTTTTCTCTTGAGGGGAGGAGTTGGGAAAGAAGATTAAAGAGAAACTGTCAGTATCAACAAGATCAGGGGAAGTAAAAAGAAGCCTAGATATTTTCTGGTATAGGTTGTTTTGGGAAATTGGAAGTGCTTAAGCATTTCTCAAGGTCAAACACTTTGGGGCTAATTTAAGTTAAAAACAGTGGAGTCCTGAGTAAAATATAACTGAAGGGTGGAACCTGCATTGAAGTTTAATTGTTTAAATAATGGATCATTTCATGATGTCATTTGAAAGAGAATTGAAATACCTGCATGGATGTACTTCTTGCCTAAAGAGTTAAGATTCATCTTTTGACAGATTTAAGCATCAGAGTATTATTATTGATCATCTTTAGTTTATGACCAAACTAAGGTCCATGAATAGTAAGCATTACTGCACCACCAGTTATGACCTTAGCTTGTCATTTATTGCCCCGGATCATTAACTACCATCACGCATAAATTCTCTTAAAAAAGAGAGCCTATTATCATGCACAGACCTAAAATCTCATGACCTGTCTTTCCCTTTATGTCTAAAATCGCATCTACTGTTCTTTCATTTATTTGAATCTACGGTGTGAACTTGTAGTTGGATCCGGAGCTGGATTTTGATCGTGAGGTTTATCCTCTTGGTTTGCTTCCAAATGCTGGAGTTGTAGTTGGCGTCTCCCAGAGAATGTCATTTTCCGCATGTACAGAGTTTCCATGTTTCGAGCCATCACCTCAAGCTCAGACTATTTTGCATTGCCTACTTCGACATCTTCTACAGGTACCTAGCAGTTGTTACATTCATAGGGTAAAGTGAAACCACTGATGGAATATCTTTTTATTGATAAAAAGGTGGAAGTTTGCAAACATGTTATCTTTCTTTAGTGACGATTAAATTTTAATTCTAAATTAAGAAAAATAAATATCTTTCTTCAAGGAAGTTGATGTTGACATTTCTGTCAAATCTTTGCTTTTGATTTTCCATATGGAGAAGTGCCAAGTGCTACATTTTCTTTTAGATAGAGTTATAGTATATAACAATGCAATTTCATTACTCATTATATGCTTTGAGAGAGAGAAGAAAGAGGAGTAATGGTGTGTAACCATGAAATTGCATTACCCCAGGTGTGAGCCGTGGGAATGGAGCTCATTTTTCACTTTACAGTATGCTAGAAATTTTAAATTTGTAAGATCGTAATTACATAATTTCTATTAAATGATAGTACAGTATAATGGGATTCAGCATTCATTATAATTTGTCCCAAATCAAATCACGAAGTTCTTCCAACCCTAGTTGAATGTTTTCTTTTGTTTATCACAGCTATTTGAGGTATTTTCTGTGCATTAGAATGATGATTAATTTATATTTAAAAATATTATTAGATATTTAGAAAATGAGAAGTACCACAAGATGAAACGTTTTGCACTTGAGGAATAGTTTTTTGTTTTATTGAGTTATAAATGTGATTTTTGATTTAGAAGGGATTTTCAAGATTGGAAAGGGGGTGGATTTCAAAGATTACTAGCCTTCATATCCAAGTCAATCCGGTGGATAGCCTCGATGGTTGGTGGTTGGCCTAGGAAATGGATTGTTCTTTCTGAAGTCCTTATGAGAAACTTTTGTTTAAGGTGGAGTCTGATTTCCCATGTACTGCAATATGGGTTTCAATTGTGCTGAGAAATGTGTGTTTTTTCACATGGCTAGCTACTAGAGGGATGATTTTGAAAGCGGAAGGTTATCTCCGTCAATTGATGTTGCATGTGTAAGGAGGTGGGCAAGGACGTGGGTCATCTTCTTATACATTGTGGGCTAACCAATGAGATTATGGTGGGATATGTTTAGGTGGTTTGGCACCCCTTTGGCAATGCCAAATACTGTGAAAGAGTTGATGTTTTGTTGGTAGAGTGGGAGGAGGAGAAGATGAAGGGCTTGGAAAGTGGTTCCGCTTGCTTTCATGTGGGTTGTTTGGATAGAGAAATAAGAGAGCTTTTGTAGGAGTGGAATCGAGTTTCTCTCAGTTGAGGAGTAGTCTCCGATCGCTCATTTTCCTTTGGTCTAAACAGAAAGTTCCAGTTAGACTGGGTGGAGTTTGTAGAGAATCAATCATGTTTTATAAATTTACTTTTTGGTATATACCCATTGAGTCATTGTATATGGTCAGTTTGGCAATGTTTATTAATAAAAATACTAATACTTATACTTGATCAATTTTTTTTTTTGAAAAATGCGATTTTTGATAAGAGAAGTGAGAAGTCACAAGTACACAAAACTTTTCATGATAAGGTAGCAATCTTCTTATTTATCTGACAAAATGTAAAGTAAATTTTTTTGTTTGTAGGAAGATTTTTATACAGCTCAATTTGTGGACGCTTATGCATTTAATGGTTCATGTTTAATCCTGATCCATGCATCTGTTAGTTGGTATTCATGTTCCTATTTCTATAATCAATATTTTGGTAGACAATTTTTTTGTATAATCCATATTTTTCCCCTTTTTCTTTTTTGTTTCTGTGTGTGTTTTAGGTGTCTTTGTTTTCATCTGAATAAGCATTCATTTCCATGAGGCTGCTTTAATCTTTATAGTTTGTTAACCGCGAGGATTCACATGAAACAGAATTAACAAACAACTTCATTTTTGTGATGATCTCTCTTACTGTTTTGGCAGAGGGATAAAAAGGAAGAAGCTCTAAGATTGGCACAATTATCAGCTGAGAAGCCACA</genome_strand>
        <mrna_strand>TCAATCATGACTGCAAAGAGCTTTCCTGCATCAATGCGTTTTATTCCTGATCGGCTCCCTAGAGAAGGCATTGCAGGAAATGGTGGTCTGCCAACTTCTTTGGATCTGTCAGTCCGAGAGCCTACCCG........................................................................................................................................ATGCTTAATACTAAGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGAGAACTTACGGACTCCGTAGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCAAGCTTGATTGAGGAAGTTTCATGGTTAGACTATGGCCACCGTGGAATGCAG................................................................................................GTTTGGTATCCATCTCCTGGTGCTGATGTTTTTAAGCAAGAGGATTTTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCCGGAGCTGGATTTTGATCGTGAGGTTTATCCTCTTGGTTTGCTTCCAAATGCTGGAGTTGTAGTTGGCGTCTCCCAGAGAATGTCATTTTCCGCATGTACAGAGTTTCCATGTTTCGAGCCATCACCTCAAGCTCAGACTATTTTGCATTGCCTACTTCGACATCTTCTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATAAAAAAGAAGAAGCTCTAAGATTGGCACAATTATCAGCTGAGAAACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562872" ref_strand="+" ref_description="SGN-U562872 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tttgtaatattgaatgatcactttgcatagaataagtcatcctcttacgcaagtcaattattatctgaattaccataatctacaagctaagaaaggaagaataatctaaaagtattgtactaaattcaagtagagatcaagggattttcctgccaaaaaaaagaaagtttcaactcattgaacatgattagatttgggttctccagcaccaggagggggataattggctggtgggtaaccctgaggtggctgctgtggtgatgggtaaccctgaggctgctgctgtggtggtgggtaaccctgaggctgctgctgtggtggtgggtaaccctgaggcgtctgctgtggtggtggataaccttgagggtgctgttgtggtggataaccctgaggctgctgctgaggtggtggataatcctgaggttgttgctgaggtggttggtactcctgagggttttgctgagatggaggataaccctgaggatgttgtggtggtggtggattaccatggggttgtgggggatatcctagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="43336" stop="44467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43635" g_stop="44168" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U562872" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43635" e_stop="44168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAATATTGAATGATCACTCCGCATAGAATAAGTCATCCTCTTACACAAGTCAATTATTATCTGAATTACCATAATCTACAAGCTAAGAAATGAAGAATAATCTAAAAGTATTGTACTAAATTCAAGTAGAGATCAATGGATTTTCCTGCCAAAAAAAAGAAAGTTTCAACTCATTGAACATGATTAGATTTGGGTTCTCCAGCACCAGGAGGGGGATAATTGGCTGGTGGGTAACCCTGAGGTGGCTGCTGTGGTGATGGGTAACCCTGAGGCTGCTGCTGTGGTGGTGGGTAACCCTGAGGCTGCTGCTGTGGTGGTGGGTAACCCTGAGGCGTCTGCTGTGGTGGTGGATAACCTTGAGGCTGCTGTTGTGGTGGATAACCCTGAGGCTGCTGCTGAGGTGGTGGATAATCCTGAGGTTGTTGCTGAGGTGGTTGGTACTCCTGAGGGTTTTGCTGAGATGGAGGATAACCCTGAGGATGTTGTGGTGGTGGTGGATTACCATGGGGTTGTGGGGGATATCCTTGAGG</genome_strand>
        <mrna_strand>TTTGTAATATTGAATGATCACTTTGCATAGAATAAGTCATCCTCTTACGCAAGTCAATTATTATCTGAATTACCATAATCTACAAGCTAAGAAAGGAAGAATAATCTAAAAGTATTGTACTAAATTCAAGTAGAGATCAAGGGATTTTCCTGCCAAAAAAAAGAAAGTTTCAACTCATTGAACATGATTAGATTTGGGTTCTCCAGCACCAGGAGGGGGATAATTGGCTGGTGGGTAACCCTGAGGTGGCTGCTGTGGTGATGGGTAACCCTGAGGCTGCTGCTGTGGTGGTGGGTAACCCTGAGGCTGCTGCTGTGGTGGTGGGTAACCCTGAGGCGTCTGCTGTGGTGGTGGATAACCTTGAGGGTGCTGTTGTGGTGGATAACCCTGAGGCTGCTGCTGAGGTGGTGGATAATCCTGAGGTTGTTGCTGAGGTGGTTGGTACTCCTGAGGGTTTTGCTGAGATGGAGGATAACCCTGAGGATGTTGTGGTGGTGGTGGATTACCATGGGGTTGTGGGGGATATCCTAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600025" ref_strand="+" ref_description="SGN-U600025 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30690206|ref|NP_850445.1| (e_value=1e-54) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G46060.2 (e_value=1e-56) | Symbol: None | transmembrane protein-related, contains weak similarity to Swiss-Prot:Q9HCN3 transmembrane protein 8 precursor (M83 protein) (Homo sapiens) | chr2:18948172-18952129 REVERSE | Aliases: None; ">
      <seq>gctactctttctagcttcatatatgcaactactgtgctcaaaccttatgaatggagatacattagtgtggacttaccaccatggttctcttcggtgactattgctttggaatccaatattggcgttgacctgaatagaataggaaaagcaagtactttgccgatgatctgcttccgagaaggaagtccgccccttccagatgttcataacacttctcttacaggtctagtgatagaccacatttccaatagttcctttggaggatcacaagatcttcaaatggttgagaagtgctaccccatgcagaaaagtatatccttgatgttgacaaatgagcagattcgtccaggaatatggtattttgggttatttaatggcatcggacctttaaggacacaatcaaaaatgattaatcgaggacattcatactcattcagtggtaacttaactgtggaaggctgtacaaattcagctatgctggggaaattctgcaaccaaacaattagtttactctcatgttcggatacctatttatctcctcaaagtggaatagccaatatgactacctgtggaggtaccgagaacagctgtcttgacgtcgctgggtcaaaagtctactcattggatgtagtgagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="51494" stop="56162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51794" g_stop="51860" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51861" i_stop="53459" i_length="1599">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53460" g_stop="53518" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="126" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53519" i_stop="53753" i_length="235">
            <donor d_prob="0.618" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53754" g_stop="53856" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="229" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53857" i_stop="53940" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53941" g_stop="54050" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="339" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54051" i_stop="54188" i_length="138">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54189" g_stop="54257" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="408" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54258" i_stop="55362" i_length="1105">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55363" g_stop="55507" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="553" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55508" i_stop="55775" i_length="268">
            <donor d_prob="0.786" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55776" g_stop="55862" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="640" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U600025" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51794" e_stop="51860"/>
          <exon e_start="53460" e_stop="53518"/>
          <exon e_start="53754" e_stop="53856"/>
          <exon e_start="53941" e_stop="54050"/>
          <exon e_start="54189" e_stop="54257"/>
          <exon e_start="55363" e_stop="55507"/>
          <exon e_start="55776" e_stop="55862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTCTTTCTAGCTTCATATATGCAACTACTGTGCTCAAACCTTATGAATGGAGATACATTAGTGGTAATTTTTTTTTTGGATTAGTTGATTAAAGTTTGTATTTTTATCCTTTTTCTCAAAGGGGTTTTGATTATTTTTTGTTTGTTTTTGGGAGGGTTGTTGTGGTATGTGAATTTTAAGTTTCATTCTGGGACCTTGACGAAATTTGGGATGATGGGGTTTGATTCTTGTAGAATTCTTGATATCTGGTTTTATTTGGATGATTTTTCTGTACTTGTTGCTATATTTCTTGTGTTCATCAAATGCAAGAATCGGTGAATGTAGTGAGAGATGTATGAGAGGGATAATTTGAGTTGTTGTTTTTACTTATTGATGGTTTATGGATCACTTGTTCATTCATGTATCAGGTGCACTGGGAGGGGGGTGGGGTGGGGGAGGGATTCTGGGACCTCGACGAAATTTGGGATACTGAGGGTTGATTCTTCTAGAATTCTTGATATCTATTCCTGTATTCATCAATGCAAGAATAGATGAGTGCATCTAGAGATGTATGAGAGCAATAATTCGAGTTGCTTGTTTCATTTTTGAGTTGTTTTTACTGATTGATGGTCTATGGATCACTCGTTTCACTTGATTATTAGTTGCGCTGGGAGGGAGATGGGGTGGGGGAGAGTTTGACGGAGCAGGGGAGGGATTCTCGGATCTTGACGAAAATTGGGATACCGGGGTTTGATTATCTTAAATTCTTGATATCTATTTCTTGCATTCATCAATGCAAGAATAGATGAATGCAGTGAGAGATGTATGAGGGCAATATTCCGAGTTGCTTGTTTCTTTTTTGAGTTGTTTTAACTGATTGATGGTCTACGGATCACTTGTATAACTAATGTATCAGTTGCACTGGGAGGGGATGGATGAAGTTAGAGGTACTGGGTTTGATTCTTTTAGAGTTTTTTTAACCTGTTTCTCTGTATTCATCAATGCATGAATAGATTAATGCAGTTAGAGATGTATGAGAGCAATATTTCGAGTTGCTTGGTTCGTTTGAGTTGTTTTAACTGATTGATGGTCTATGGATCACTCGTTTACTGATGTATCAGTTGCTTTGATGTAAATATGTAATTGCTTGTTCTGATTCAACCAACTGGTTTTGTTTATTTATTCTTGTTAGCATTTCCATAGTTTCAAAACAAAAAAAATCCTTGGTCATGAGCTGCTCGCTCTGTTATTCAGTTGTTGTGGATTTAGCTTGTTCTCTGCCTTAGTGTTTGTAATGTTCTATTATTAATTACTCCATTCTAGCTATCTTGGTTTTGTTTGTGAAGTATCAGTGTTTACATCTATCTATGTAATTTTTTGAAAACTGGGTTTTTACAGGCAGATTAGTGCTATCTTATTTTCTATGTATATTTTTGAGAAGTGTTCTTTACAGACAGATTAATGCTATCTTATTTTTTAGTCTCGGTTTTTCAAATGGTTCCAATCTGGATCTTCTTATTTGATGGATATCCTTAGAGATGTTTCTGCGTTGGTTGTATCACGGATAATTGTGTGAGGAAGTGTTGAATGGAGAATATACTGTGTTGTGACTTCACACAGTTTAAGGTTTCTTTCCGTTTTAATTTATGGCTTACTGGTTTTGGTTTCCATGCCTTTCTGCAGTGGACTTACCACCATGGTTCTCTTCGGTGACTATTGCTTTGGAATCCAATATTGGCGTTGTAAGTGCATGACCGAAACTTGCCTCATTGAAATGTTCTGCTTATAACTTTGGAATCTCTTTTTTGGTTGTCTTTAATATGATTATGCAATTTGCTCCTTTTGCCACTACAATTTCTCTGTTTACTTCCGTAATATTGGTGTTAGAGGATTTTTGTCGCTGACCATCATACCATGCTTTTAATCCCAATAATTATCCTTCTACAATCTTTAATTCCTGAATTTAACTGCATGCAGGACCTGAATAGAATAGGAAAAGCAAGTACTTTGCCGATGATCTGCTTCCGAGAAGGAAGTCCGCCCCTTCCAGATGTTCATAACACTTCTATTACAGGTCTAGGTACAAAAATCATTCTCTTAACTGACTGAGCATGCCAAATCATGTGGCCACGAAGTAACTAATAATCTTAGTTTTTCTCTGTAGTGATAGACCACATTTCCAATAGTTCCTTTGGAGGATCACAAGATCTTCAAATGGTTGAGAAGTGCTACCCCATGCAGAAAAGTATATCCTTGATGTTGACAAATGAGCAGGTTTATTCTTAACTTTGTAATATATGTGGGCTAGTTTCTTCTTTGTAGTATACTAGCTTCTCCATTTGAGAGATAAATTTCTTTTCAGTGGAGGTCTTATGCATATTTACTTGGGGTTTGAAATAAGTTTTTTCGCAGATTCGTCCAGGAATATGGTATTTTGGGTTATTTAATGGCATCGGACCTTTAAGGACACAATCAAAAATGGTACTTGCTCTGACTTATTTATATTCCGCATCTTGTTCATTATCTTTTGCACTTCTTTCTTATGGACATTTCTATTTGAGTTTTCAACATATGATCAGATAGACATTATTTATTTGTTTAAATGATCTTCTGATGTATCTGAACATCTCTATGTGATCAATTAATACCCTGTGTTTTTTTAAAGTTTAGTAAAAGAATTGAACTCGATTTTCTCTCCTATTTACTACAGAGATAATAATTAAATTATCACTACATTTATCTCTTTGTCTACCTAAGCAGAGGAATTTAAAGAGGAAAGGCCTGCTACTCCTCTTCTTTGGCTTGAACCTAAAAGATGGTGCAAAATGAAAGAGGAGAGCTAACATGATTGATCTTATTTGGGGTTAATCATTCACATGAGCTCTTCCAGTCAGACTTCCACCAGCTCTGTTGCTACTGAACCTTAGAGAAATGCGGGGAGATGGCTTGCACCTGCTCTTTTGTGGTTGTCATGCATTTTGTGAAACTAGTGAAAAGGATTTCTAAGTGGAAAGAAATTAAGAAGTGATAGATTTGTGAGAGCGTTGTAGTTTATGTTTCTAATAAAGGAACAACACCGCTAGATTAAGAATGGGCTTGAATCTAACAAAGCTCTAAGATACGAGTACACATTAGTGAGGAAGTGCTCCGCCTAAGAGAGAAGCCTGCTCTCTTCCTTGTGGGCAGTTGTTAGTGAGGAGGAATACATACTGAAAATTGTTTCCTCCAAACTTGTAATGAAACTTTCCTCTGTAAATACTTGCCAGCAGTTTTGGTACTTTTTAATACAATACCTATATAAATCAAAAAAACATAATTTGTATCCTCCAAAAGGTAGCAGGTGTGTCTTCAGTTCCACTGGATTGTTTACTTGTATGATGATGATTTGTGTTCCTTTGTCATAACAATGAAAGAAATACTACTTCAATTAAAGTGAAGATTCTAAGAATCAAATCTCACTCCCCAACCCTTGGAGTGAAGCTTACCACTGTGAAACAAATATCTTTCTTTTAAAGTCGTAATACCATCATTTCAACAGTTTAATATCTTAACTAGCTAATTTCTATTGACTGGTTTCTCTTTGCAGATTAATCGAGGACATTCATACTCATTCAGTGGTAATATAACTGTGGAAGGCTGTACAAATTCAGCTATGCTGGGGAAATTCTGCAACCAAACAATTAGTTTACTCTCATGTTCGGATACCTATTTATCTCCTCAAAGTGAAATAGGTATGCAAATTTGTTAGAGTGTGTGACCATCTCATCTAACATATTTGTTAGAGACAGTACACTTTAATTTACTTGATTATATTCAGGGTCCTGTGTCTTTTTTCACGGGCTAAAGCATGTGAAAATTCTCTTTGATAATGGGTGGTAGTGACATTCGATATCAGGACCTCTGCTTGCTCTGAGATCATGTCACTCTAAAAGCTTAAGCTGGTAGAGAGAGCATACTTTTATTTACTTGAGTATATCCTTAAATCTTATAAAACTGCAGCCAATATGACTACCTGTGGAGGTACCGAGAACAGCTGTCTTGACGTCGCTGGGTCAAAAGTCTACTCATTGGATGTAGTGAGTATTG</genome_strand>
        <mrna_strand>GCTACTCTTTCTAGCTTCATATATGCAACTACTGTGCTCAAACCTTATGAATGGAGATACATTAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACTTACCACCATGGTTCTCTTCGGTGACTATTGCTTTGGAATCCAATATTGGCGTT...........................................................................................................................................................................................................................................GACCTGAATAGAATAGGAAAAGCAAGTACTTTGCCGATGATCTGCTTCCGAGAAGGAAGTCCGCCCCTTCCAGATGTTCATAACACTTCTCTTACAGGTCTAG....................................................................................TGATAGACCACATTTCCAATAGTTCCTTTGGAGGATCACAAGATCTTCAAATGGTTGAGAAGTGCTACCCCATGCAGAAAAGTATATCCTTGATGTTGACAAATGAGCAG..........................................................................................................................................ATTCGTCCAGGAATATGGTATTTTGGGTTATTTAATGGCATCGGACCTTTAAGGACACAATCAAAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCGAGGACATTCATACTCATTCAGTGGTAACTTAACTGTGGAAGGCTGTACAAATTCAGCTATGCTGGGGAAATTCTGCAACCAAACAATTAGTTTACTCTCATGTTCGGATACCTATTTATCTCCTCAAAGTGGAATAG............................................................................................................................................................................................................................................................................CCAATATGACTACCTGTGGAGGTACCGAGAACAGCTGTCTTGACGTCGCTGGGTCAAAAGTCTACTCATTGGATGTAGTGAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563000" ref_strand="+" ref_description="SGN-U563000 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147773363|emb|CAN75717.1| (e_value=1e-73) hypothetical; (*ATH) AT2G46060.2 (e_value=6e-63) | Symbol: None | transmembrane protein-related, contains weak similarity to Swiss-Prot:Q9HCN3 transmembrane protein 8 precursor (M83 protein) (Homo sapiens) | chr2:18948172-18952129 REVERSE | Aliases: None; ">
      <seq>gttttttaagttatatgatgcaagtgataaatctgttagcttttatatcatatatgctagaggaggaacatggagttttgggttaaggcacccaatttccaacagggataggtcgacagttgaaactaccatgtctatccccctagagagatgcccagcgaaatgctcttcgcacggggcatgcaagtctgtgttggattcaagtggtcccacattctacagtttctgtgattgtgatcgacccactggaggctttgattgcagtgttgaactggtttcttcttcaggacaaatgtggcaatcgatttcccttattggatccaatgctgcagctttgctccctgcttactgggccctccgtcataaggcatttgctgaatgggttctttacacatcaagtggtatctcaagtggcccgtatcatgcatgtgatcttggcacttggtgtccattatcctatcatgtcttacagttcatggatttctggctctctttcctggctgttgttagtacttttgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="56627" stop="58650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56927" g_stop="57148" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57149" i_stop="57231" i_length="83">
            <donor d_prob="0.692" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57232" g_stop="57296" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="287" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57297" i_stop="57825" i_length="529">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.195" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57826" g_stop="57905" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="367" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57906" i_stop="58106" i_length="201">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58107" g_stop="58211" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="472" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58212" i_stop="58299" i_length="88">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58300" g_stop="58350" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="523" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U563000" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56927" e_stop="57148"/>
          <exon e_start="57232" e_stop="57296"/>
          <exon e_start="57826" e_stop="57905"/>
          <exon e_start="58107" e_stop="58211"/>
          <exon e_start="58300" e_stop="58350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTAAGTTATATGATGCAAGTGATAAATCTGTTAGCTTTTATATCATATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAGGTTCATATATGACGATTTCTGAAGATTAAGCTATTGGGTTCTCCACTTCTCATGTTCTCATGCAATAAATCTGTCTTTTTCAGTTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAGGTAAAACATTGTATCTTTGTGCCATTCGGAATTATGTCAGTGTCTTTAGCCATTTTAAGAGAACTGTTGCTACATCCTCTGTGGTTTCTTTGTTTGTTTGTTTGTATTTTTGAAAGTCTTCACTTAGCACTTAAAATTGAATCTGGAACTAGACGTTGCAGATTAGAGTAACTGGTTACTGTTTGCGCAATCAGTACCATATCGAGTAAACCTTTCAATTTATTCAATGTATGATAATATGAGGAGCAACATTTGTGTGTTCTGAGTGGTGATAGCTTGCTCTGATCATGATTTTGTTTAAACCATTTCAATTGCTGCATGTGTTTCACCAACAAAAATAAAAAATAACAAATTGAAACATTATGTTGCCAACATGTCTTTTAACATGCTATTTGCTATTGCTAGTACACTCTTGATTATTATTTGTTTGCTTATGTTTTGCTAACATTTTAACTCAGTTAGTTCTCATTAGTAGCCAATTAATTAGGCAATGGATCTTTTAAAGGACAAGTGCTGAAAACTCATGTAGGACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAGGTGATTAGCTAATCCCATAACATCTTCTGATTGATATTCAAGTGAAGAGGCTGTTAAAATCAGATATCTAGGGTTAATTTCAGTAGACAAACTTTTTCAGAGTGTGAGTATAATAATTTTTTTTCAGTGGACAAGCGGATGAACTTGAGGTAGAGCTATACCTTGGATTCTTCATTTTTCTATGCCTCCTTTCTTCTGCAGGCATTTGCTGAATGGGTTCTTTACACATCAAGTGGTATCTCAAGTGGCCTGTATCATGCATGTGATCTTGGCACTTGGTGTCCATTATCCTATCATGTCTTACAGGTATCACTCCTATGCATTTTGCTATATTGCATTTTTTCGTTTGGTGGCTAAGTAATTATATGGTTTCCTTTTTGTTGATTGGCCCCAGTTCATGGATTTCTGGCTCTCTTTCATGGCTGTTGTTAGTACTTTTGTTTAC</genome_strand>
        <mrna_strand>GTTTTTTAAGTTATATGATGCAAGTGATAAATCTGTTAGCTTTTATATCATATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCCAACAGGGATAGGTCGACAGTTGAAACTACCATGTCTATCCCCCTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCCCACATTCTACAG...................................................................................TTTCTGTGATTGTGATCGACCCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAG.........................................................................................................................................................................................................GCATTTGCTGAATGGGTTCTTTACACATCAAGTGGTATCTCAAGTGGCCCGTATCATGCATGTGATCTTGGCACTTGGTGTCCATTATCCTATCATGTCTTACAG........................................................................................TTCATGGATTTCTGGCTCTCTTTCCTGGCTGTTGTTAGTACTTTTGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563116" ref_strand="+" ref_description="SGN-U563116 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349822|emb|CAO39678.1| (e_value=4e-38) unnamed; (*ATH) AT2G46060.1 (e_value=6e-33) | Symbol: None | transmembrane protein-related, contains weak similarity to Swiss-Prot:Q9HCN3 transmembrane protein 8 precursor (M83 protein) (Homo sapiens) | chr2:18948172-18952172 REVERSE | Aliases: T3F17.29; ">
      <seq>taggctctgttcattgggttcctcattgaattctttagtcagcatagatggatttccttttcaacagaaatttgtttgaacatgctcgacagatgggaaactgtaaaagcatgggttcataatttcattcggtctcttctgaagcgctttcggtggcgctttctacttgcgggattcactgcattagcaatagctgctattagctggaaacttgaaacaagtcaaaattactggatatggcacagtgcatggcatgttacgatatatacttcttcatttctttttctctgttcaaaagcaacagcagttaactgtgataacgaacaacctcgatcagagaactatgagttggctcggcaaaattctttcaatggtagtagcgaaagaggtggtagatagttcgtaatagaatctacttcagctcaagcacataacatatagaggctagagctgcttgatgccgagaacgtacgatgaactgcaccaagaaggcacttctcttcattaggcaagtgattacaagcaaatgtttgtcaatcgtttttaacaataaaaaaaaatgtttgttagtcattgtcaaatagttttctttttctttaaagttttacttgctaagggatacaccattggtgtcctttttataggaaccaaaagcagaaaaggtccattttgtgtagtcaggaaagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="58270" stop="59769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58568" g_stop="58659" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58660" i_stop="58777" i_length="118">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58778" g_stop="58930" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="245" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58931" i_stop="59025" i_length="95">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59026" g_stop="59470" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="690" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U563116" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58568" e_stop="58659"/>
          <exon e_start="58778" e_stop="58930"/>
          <exon e_start="59026" e_stop="59470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCTGTTCATTGGGTTCCTCATTGAATTCTTTAGTCATCATAGATGGATTTCCTTTTCAACAGAAATTTGTTTGAACATGCTCAACAGGTAGGTGGAATTTTTGTTCTAAAAATTTAGACATGTAAATTTTTAGAACAAATATATAAATTTTATATATTTGTTTTAATATCTAACAAAATTCAGCTAAGTATGATTTTGAATGCAGATGGGAAACTGTAAAAGCATGGGTTCATAATTTCATTCGGTCTCTTCTGAAGCGCTTTCGGTGGCGCTTTCTACTTGCGGGATTCACTGCATTAGCAATAGCTGCTATTAGCTGGAAACTTGAAACAAGTCAAAATTACTGGATATGGCACAGGTCTGAAGAGCTATCAAGCATTTCTCCTACGTTTTTTTGATTCTCTCTCTCTTTCCTACTCTTTCTCTGACATCTTTCATATCTCGTTTCTGCAGTGCATGGCATGTTACGATATATACTTCTTCATTTCTTTTTCTCTGTTCAAAAGCAACAGCAGTTAACTGTGATAACGAACAACCTCGATCAGAGAACTATGAGTTGGCTCGGCAAAATTCTTTCAATGGTAGTAGCGAAAGAGGTGGTAGATAGTTCGTAATAGAATCTACTTCAGCTCAAGCACATAACATATAGAGGCTAGAGCTGCTTGATGCCGAGAACGTACGATGAACTGCACCAAGAAGGCACTTCTCTTCATTAGGCAAGTGATTACAAGCAAATGTTTGTCAATCGTTTTTAACAATAAAAAAAAATGTTTGTTAGTCATTGTCAAATAGTTTTCTTTTTCTTTAAAGTTTTACTTGCTAAGGGATACACCATTGGTGTCCTTTTTATAGGAACCAAAAGCAGAAAAGGTCCATTTTGTGTAGTCAGGAAAGTTAT</genome_strand>
        <mrna_strand>TAGGCTCTGTTCATTGGGTTCCTCATTGAATTCTTTAGTCAGCATAGATGGATTTCCTTTTCAACAGAAATTTGTTTGAACATGCTCGACAG......................................................................................................................ATGGGAAACTGTAAAAGCATGGGTTCATAATTTCATTCGGTCTCTTCTGAAGCGCTTTCGGTGGCGCTTTCTACTTGCGGGATTCACTGCATTAGCAATAGCTGCTATTAGCTGGAAACTTGAAACAAGTCAAAATTACTGGATATGGCACAG...............................................................................................TGCATGGCATGTTACGATATATACTTCTTCATTTCTTTTTCTCTGTTCAAAAGCAACAGCAGTTAACTGTGATAACGAACAACCTCGATCAGAGAACTATGAGTTGGCTCGGCAAAATTCTTTCAATGGTAGTAGCGAAAGAGGTGGTAGATAGTTCGTAATAGAATCTACTTCAGCTCAAGCACATAACATATAGAGGCTAGAGCTGCTTGATGCCGAGAACGTACGATGAACTGCACCAAGAAGGCACTTCTCTTCATTAGGCAAGTGATTACAAGCAAATGTTTGTCAATCGTTTTTAACAATAAAAAAAAATGTTTGTTAGTCATTGTCAAATAGTTTTCTTTTTCTTTAAAGTTTTACTTGCTAAGGGATACACCATTGGTGTCCTTTTTATAGGAACCAAAAGCAGAAAAGGTCCATTTTGTGTAGTCAGGAAAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577032" ref_strand="+" ref_description="SGN-U577032 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|171854683|dbj|BAG16531.1| (e_value=1e-96) putative; (*ATH) AT4G00335.1 (e_value=2e-39) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr4:145928-148334 FORWARD | Aliases: None; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-22) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290/At3g02291; ">
      <seq>gtgtggttattggtaaagcttctgtttttcctccttttgtcttgtttctagtgtgccactacctctgtattgaattgtccctcttcatacagacggagaaggtaatgtgttgggaaataagacatatacttggataactaaaacatctgcaagatgggtggttgctgttgctcttcaaggaagcctccccagcttcatggaacacaagtattttactattttcctccagcttctgaagagtatgagtccctgacatctgatgatagtgctgctattgcatttacctctgagctcctggatgatttaaacgtagatagatcaacacccgacacttaccgctctccccctgcaccaattccatttgaagtagatttggggcatccacagtcaagaggaggttcccagttcatagatgaaacattacttcaacgtagctatgagataactaattgtaaagatattaagttttctgatcgcaaagctgaaacagagtctcttcttgcctccctaaagaaagcagggattgaccttgtaaaatctaatccatctattattaaatcagcagaagaagaggatgtttgtcctacttgtcttgaagaatatgatgtcgacaatccaagaatagtctcaaaatgtaaccaccattttcatctttcatgcattcttgagtggatggaaagaagtcaaacatgcccaatatgcgatcaggaaatggtatacgaagctctatgaaaactaattaaaagttccttagatgctggtcgtcaacatgaggctgttgtttttcacttggcggcttggcctgtattcacttgttcactcatgaaagtgtaaattctctatgtatatgaagcttacgttggtaaatcccgcccttgatgaagatgcgagttgcatatatatgctgatgggagttaatttgcgggcgaagaacaaaaaaacaagttgtagttttgcatttggtgcctggaagattaaattctgaaaacgcgtctttttggtcatgattcttctgagttccaagtgttgtacagtgaacccttttggtggttgtaattttatgttcaattgctgtacagattcttctgtcaaagattatggcaatggcatagtcattaaagtttcatagactcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="64842" stop="68929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65142" g_stop="65211" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65212" i_stop="66554" i_length="1343">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66555" g_stop="66703" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="219" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67332" g_stop="67710" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="598" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130">
            <donor d_prob="0.302" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67841" g_stop="67950" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="708" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68200" g_stop="68629" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="1138" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U577032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1138</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65142" e_stop="65211"/>
          <exon e_start="66555" e_stop="66703"/>
          <exon e_start="67332" e_stop="67710"/>
          <exon e_start="67841" e_stop="67950"/>
          <exon e_start="68200" e_stop="68629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGTTATTGGTAAAGCTTCTGTTTTTCCTCCTTTTGTCTTGTTTCTAGTGTGCCACTACCTCTGTATGTAAGTCTTCTTGAAAGTTGAAACGGAAAGTGTGTAATTTTCAACCTTCTGAATTCTATTTTGTCTGGTCTATTGGTCAGGTTCTGTAAAGATTCTGTTTTTTGCTGAGTTTGTTCAATTAATTTCTGTTGTCTTTTAGCAAAGGAGTTCGCTCTAGTTCTTTCTGGTGTGCCACTGCTATTTTAATGTGTTCTTTTGAAACTGAAGGTGGTTCTAGCCAATTTATATAGAATTTGTTGAACCCAACTAGTTCAAGATTGACTGATTGAGACATAGTTGTTTAGGTCTAGTCTATTAATCAGTTTTTTGGTCTAATAATTCTGTTTTGCTTGTGTTTGTATTATTACGTCTCGTGTTTTTTTGGTGTGCCATTGTCCTTGTATGTGTATGCTTCTGAGACTGAAAGTGGGTGCAGTTAGAAATTCTGCACTGTTACTGGGTTTGGGTATATTTATCAGGTTTCTAGTGTAGTGCTTCTGTTTTCTCTGTTTTGCTAATATTTCACTTTACTTAGTTAATGTTTTCTCGAAAGCTTAGTTTCTTCGATATCATCGATGAATTTTGGTACCGGAATTGTGTTATCAAGAGTTTGACTGCTAGTACTTGTTGGTTCATGTTAACCTCAATAGTTTTTTAGGGTATGATTTATAGGTTTTTTTAAACTTCTGGGGAACTTCTCTTTTTAGCTCAGTATTTGTTTGTTATGGTTAGAATATTCATTGGAGTGTTAAAGCTTACTGCTTTGTTTATTGTTATTGCAATTTCCATTGCTTTTTGAAGATAGTTACCTGCTAACTCCCAATAGTATATGTACGGTTAGCTCCTTCCACCAAGCCCTAGCAAATTGGAAAAGAATCACCAAGTGTTTTTTTCTCTGCTCGGTTTGAACCCTAGTCTCCAAGGTATGCACCCACCCCATTGACAATTAGGATACACCTTTGGGTAATTATATAAGCTTGAGTGTACATATTACATCATTTTCTTCTCTAAGTCGGTCCTTGTGCAATCTTTGTTACACGTTCAAGACAAAGTAATCACAGAATATGGACTCTTCTGTATGTTATGGAGAGAAAAGTATAGAAGAGCAAATGCACTTCTTCAAACTATAAACTAAGTACTTAGCTTGCTTTGAGGGTTAATTTAATTCTAAACTGTTATAGTTGATGTGTACTATGTTGGATCAAAGTAGCTTTATGTTCTTGTTTCAAGAAGCTCTTTTATGTGGTATTCTTGATCCTGGTCTTCTTCTTGAATTTATATGTTGCCTTACTGGCTGTTACCATTCATTTCTTTTTGTGCCTGTAAAATACTAAATGTCCATCTCTTCTTTTGCATTTCTGCAGTGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTATGTTAGTGATCTGTTCCAATCACTCTACATATGGAAACATGCAACTAGCTTAAGCGCTTTCAATTTTGTCCTATTAATTCATTTACTTTCTGTAACCTTGTGTTATTTGCTCTAGTCTGTGTAAATAGTATCATATTTCTTAAAATGGTAGTTCATTGAATTGGAAGTGGAACAGTTTCTTATTGCCTTTATGGTGCTTAGTCCGATTGACTTGACGTGAGATTTCACATTTTTAAGTGGAAAAAAACTCCTTTTTACTGTTTGATTGGTTTATCACTTGTATTGCATTGCTACAGCTCATACATTCTGCGATTAAGCTTCACTTAAAGAGATTCACCAATTTTGTCCAAGGAGAAGCTTATATATTGGGATCAGTTCATGGTTCCTTATAAACCTGAACACAGTGGATGTCTTTCAGGATAATACTCAAACTTGTAGGAAAAAGAACACAACGTATTTTGTATATACTAACTGTACACTTCTAAAGTCATGTCAATCAGTTTTACTACTCATGTCCTATGTAGACGGACTGGCACTTTGTTTGTTCATGATGTATTTTCTAATCTTTTTGTTATGGCATTCTTCTAGTCTCAAACTCTTACTTTAGATTTCTAATCTTCTTTATGCAGTTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAGGTATACACATGAACATCATTCGAGGGGTGACTTCAAGTTTATCCCTCCTCTCTATGTTTTTCTTGTTTATCTGCTATATAATCCCCCTGCGCTGAAGTTTGAATGTCTATATTTTGCACTTGTTTTGCAGAATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAGGTCTACTTTGTTTTCCTTTTCTACCGCTCCCCCCTCAATTCCTTTTTCTATCTTCCTTTGTTTGTGTCATCAGTTTCCCAAGAAGGATTTGGTTTTTTTTCATTTTATTGCTCTTCATTATCATCGCCATTTGACAACAAACCAAGTTCAAGCTCCTTTGATATCTTCAATGTCTTGATTATAAAATCCGAATCATCTTGGTTGCTGAGATTCATAAAGTGAGCGAGACTGTTGATTTTCTTGATGCAGGAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTC</genome_strand>
        <mrna_strand>GTGTGGTTATTGGTAAAGCTTCTGTTTTTCCTCCTTTTGTCTTGTTTCTAGTGTGCCACTACCTCTGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG..................................................................................................................................AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG.........................................................................................................................................................................................................................................................GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567685" ref_strand="+" ref_description="SGN-U567685 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gaaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="84816" stop="84007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84516" g_stop="84307" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U567685" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84516" e_stop="84307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATAAGAG-AAAATGGTCTGTGAAGAAAAATAGAGTGTGAACGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCTTG</genome_strand>
        <mrna_strand>GAAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597204" ref_strand="+" ref_description="SGN-U597204 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147866080|emb|CAN80959.1| (e_value=1e-18) hypothetical; (*ATH) AT2G46040.1 (e_value=8e-14) | Symbol: None | ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein, contains Pfam profiles PF01388: ARID/BRIGHT DNA binding domain, PF01448: ELM2 domain | chr2:18942374-18945520 REVERSE | Aliases: T3F17.31; ">
      <seq>catcaaaacccccttcaaatccagctcaaggtccatccgaacagcactaaaacccaaagcactcttcttaacctcactcttttcattatcaggttgctcaagtttcaccattgctctgttcaatgcatccaagtacttaacatacaccaacttcaaagccgaaccagttgttaaatcaaacccacactctacagcaaccacaccccaagaccgacttgcacaaaccctttcgtacccacccttctccctcacaaccaagaacagttcgcacaaatccaccgccttcccatcaccgagcatccgaggaaatggcctaaaacacaaacacccattaaccttttttaacaaacgattaacaagaacactatcaagcttcgaaacattttctactgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="87591" stop="86595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87291" g_stop="86895" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U597204" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87291" e_stop="86895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAACCCCCTTCAAATCCAGCTCAAGGTCCATCCGAACAGCACTAAAACCCAAAGCACTCTTCTTAACCTCACTCTTTTCATTATCAGGTTGCTCAAGTTTCACCATTGCTCTGTTCAATGCATCCAAGTACTTAACATACACCAACTTCAAAGCCGAACCAGTTGTTAAATCAAACCCACACTCTACAGCAACCACACCCCAAGACCGACTTGCACAAACCCTTTCGTACCCACCCTTCTCCCTCACAACCAAGAACAGTTCGCACAAATCCACCGCCTTCCCATCACCGAGCATCCGAGGAAATGGCCTAAAACACAAACACCCATTAACCTCTTTTAACAAACGATTAACAAGAACACTATCAAGCTTCGAAACATTTTCTACTGACCTG</genome_strand>
        <mrna_strand>CATCAAAACCCCCTTCAAATCCAGCTCAAGGTCCATCCGAACAGCACTAAAACCCAAAGCACTCTTCTTAACCTCACTCTTTTCATTATCAGGTTGCTCAAGTTTCACCATTGCTCTGTTCAATGCATCCAAGTACTTAACATACACCAACTTCAAAGCCGAACCAGTTGTTAAATCAAACCCACACTCTACAGCAACCACACCCCAAGACCGACTTGCACAAACCCTTTCGTACCCACCCTTCTCCCTCACAACCAAGAACAGTTCGCACAAATCCACCGCCTTCCCATCACCGAGCATCCGAGGAAATGGCCTAAAACACAAACACCCATTAACCTTTTTTAACAAACGATTAACAAGAACACTATCAAGCTTCGAAACATTTTCTACTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566829" ref_strand="+" ref_description="SGN-U566829 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157349828|emb|CAO39684.1| (e_value=5e-60) unnamed; (*ATH) AT4G11400.1 (e_value=2e-42)  Symbol: None | ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein, similar to BRG1-binding protein ELD/OSA1 (Homo sapiens) GI:18568414; contains Pfam profiles PF01388: ... ; ">
      <seq>gcaaaaacagaaaatgcatccatctatgtatgatgataatagtgggtctgagcagctaaggtgcagccaaagggtccaatctgcaaaagattattcgaaaaaaatcaggttctcatattgatgcaactctgataaacagacctaccgactcttctgcagagtcaggagtttggtggaaccgtcggcgtaagaaaatagcatcaattgggtcggagttccaagcagatattcctgagtggaataaggacatctatgaatctgactctaaatggttgggcacccgaatctggccactggataaaaatgaacagcgcagaatattaattgaaagagatcctgctgggaaaggaagggatgatacatgtggttgtgaatatgcaggttcttatgactgcattaggtttcacctatctgagaagagaaagaagcttgaagttgagctaggatccgccttttatcactggaaatttgactgcatgggtgaaaaggttgcactctcttggacatcaaatgacaaacagaaattccatgatatagcaaagtcgatccctttatctgaggatgaaagtttcagttactggcctgacctttttaagttcttccctcacagaagcagagaatctttggtaagctactatttcaatgtctacaatctacaccgcataggtcagaagaataggatgaatactagttacgttgacagtgatgatgatgaatcagggtgtggacctaggtctatttcttttgggcgggatcctaagtcctccatctcttgttccacaaagaaagcacgtctagatcccatatagtaactacaggtgggtggatggatgttaacatcaatggctttttgttcagaaatgtaaattcgcggagtctcttgttctcttttacatcagcaatatttttgggtcggtggatacaatgggtttgaggggagttttacagatatcaatttttgttctgcatttctcaatgatatacagtttatactccctttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="89819" stop="91415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90119" g_stop="91115" g_length="997"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1002" r_length="1002" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U566829" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>997</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90119" e_stop="91115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAACAGAAAATGCATCCATCTATGTATGATAATAATAGTGGGTCTGAGCAGCTAAGGTGCAGCCAAAGGGTCCAATCTGCAAAAGATTATTCG-AAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTCCAATCTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAACACGTCTAGATCCCATATAGTAAC-A-A-ACAGGTGGATGGATGTTAACATCAATGGC-TTTTGTTCAGAAATGTAAATTCGCGGAGTCTCTTGTTCTCTTTTACATCAGCAATATTTTTTGGGTCTGTGGATACAATGAGTTTGAGGGGAGTTTTACAGATATCAATTTTTGTTCTGCATTTCTCAATG-TATACAGTTTATACTCCCTTTAG</genome_strand>
        <mrna_strand>GCAAAAACAGAAAATGCATCCATCTATGTATGATGATAATAGTGGGTCTGAGCAGCTAAGGTGCAGCCAAAGGGTCCAATCTGCAAAAGATTATTCGAAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGGAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAATGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTACAATCTACACCGCATAGGTCAGAAGAATAGGATGAATACTAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAGCACGTCTAGATCCCATATAGTAACTACAGGTGGGTGGATGGATGTTAACATCAATGGCTTTTTGTTCAGAAATGTAAATTCGCGGAGTCTCTTGTTCTCTTTTACATCAGCAATA-TTTTTGGGTCGGTGGATACAATGGGTTTGAGGGGAGTTTTACAGATATCAATTTTTGTTCTGCATTTCTCAATGATATACAGTTTATACTCCCTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579048" ref_strand="+" ref_description="SGN-U579048 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|147789691|emb|CAN74060.1| (e_value=9e-95) hypothetical; (*ATH) AT5G41340.1 (e_value=1e-83) | Symbol: None | ubiquitin-conjugating enzyme 4 (UBC4), E2; identical to gi:431265, SP:P42748 | chr5:16555351-16557358 REVERSE | Aliases: MYC6.5, MYC6_5; (*SWP) sp|P16577|UBC4_WHEAT (e_value=9e-85) Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4; ">
      <seq>ttttagtattacaaagaactcttttttttctctctctctagaatcatccaaaagaagaaagcaaccatgtcttctccaagcaaacgccgtgaaatggaccttatgaaactaatgatgagcgattacaaggtggagatgattaatgatggcatgcaagagttttatgtgcattttcatggacctgctgaaagtccttatcatggcggtgtgtggaaaataagggtggaacttcctgatgcttacccatataaatctccatccattggttttattaataaaatctaccacccaaatgttgatgagatgtctggctcagtttgtttagatgttatcaatcagacttggagtcccatgtttgatttggtaaatgtgtttgaagtgtttcttccacaacttctcttgtatccaaatccatcagacccattgaatggagaggctgctgcccttatgatgcgagaccgggctgcctatgaactaagagttaaagaattttgtcagaaatatgccaagcctgaagatgttggagctgctgcccctgaggagaagtcaagtgatgaggagttgagtgaagctgaatatgattcagctgatgatgcagttgcaggccctgttgatccatgaccgactcccgcactcattgactttatgtatctgtaaatgatgttcttagtcctgtttaatatcaagctgaactacaaagttcaagacaatgttccccttgttttattagtttagcttcaatgtaaataatttcaccctttaattactgtgttcatatttgctgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="+" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="93401" stop="97203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93701" g_stop="93810" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93937" g_stop="94016" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="190" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94600" g_stop="94714" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="305" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94807" g_stop="94859" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="358" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.494" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94974" g_stop="95095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="480" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95152" g_stop="95158" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="487" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96604" g_stop="96910" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="794" r_length="307" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="+" ref_id="SGN-U579048" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93701" e_stop="93810"/>
          <exon e_start="93937" e_stop="94016"/>
          <exon e_start="94600" e_stop="94714"/>
          <exon e_start="94807" e_stop="94859"/>
          <exon e_start="94974" e_stop="95095"/>
          <exon e_start="95152" e_stop="95158"/>
          <exon e_start="96604" e_stop="96910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACTGTGAATCTTTAATCATTCTTGTTAAAAATTTGATCTTTTTTTGTTCTTGTTAAGTTTGAGTTAGTTTTTTGTTTGATTTTTTTATTTCTTTTGATTCTATATATTTGTTTTGTTTGTTTATATTAGAATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAAGTAATCTTCTTTGCCTTTTTTCTCAATCTTTTTTTTTTTGCCTTTGTGTTAAAGCTTTTAGCTTTTTGAGGTTTTTCTTTGAGAGGGTCTTTGTTGTTTTTGATTATTGATTGTGTTTATTTGAGTTGTCCTCTGATGGTGTTTTTTGTTTTGGTTTTTGATCAAGATTCTTTAAAGGGTATGAGGAAAAGAGTGGAAATTAACTTGGGTAGTTAATGTATACCCCAGTTTGCTTCTATCTGCCCTCTATTTGTGAAATTGAATCAGGAAATTGCCATTAAAATTCATTAAGGCTGCTTGGGTATGTCTGGAATTCCTTTGGGTCTTAAAGTAGAATAGATAAAGGGTCATCTTTTGGTTCTGTAGTTAGTAGTTTTGCTTATATCTGCTTATTGTCTCTTCACCAGTGGATCTTCAAGTTACATCTTGCTTTAAGTGGAATTCAATTTGAAAGACTTCTTTTGGGGGTGGGGGTGGGGTTGTTTTGCTCAACTTGTTTGGGACTGAAGCATAGTAGCAGTGGTTGTTATTGAGATGGGTCGTTTTCTTCAGCTTCTGCTCATACTGATGGTGGTTTTGGCAGGTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGATGTAAGTGCTGATACCGGTACAAGTGAAGGAGATTTAATCATTCTTGTTTTCTTTAACGAAGGTCTTACATTTTACAAGTAATCATTTTTCAGGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTGGTAATTAGAAATCACAGCACCTATAAATCATAATTCTGTACTTTGAAAAGTTTTACTTACTTCTCTAAAAATATAATTATGAGTAAGTTATTTAAGTATTAAACAACCTTGCAGATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGAGTTAAAGGTATTGACACATTCTAATGCCTTTATTTACTCACTTGAATCAATTGCAGGTTCAAGGTACTAACCATAAGCATTCTGTTATAGACAGTGTGTTCTATAATTAAACTGTGTTTACCTTTTCAAGTTTAGAGTAAGTTCTAATGAGGTGTTCTCATTCGTTAGAAACATATATGTTTTAAGCTGTCAAATGCCATCTAGTAATGCACCAACATCGGCTTAAGATCTCGCTTCACCTTCTTCCCATAGAAGAAGCAATCTTGGTGGGTAAAAGCAAAGTGTGGCCAGCATTCCCAATTCTAGTCCTGTTTTACAAACTACATTGTTCTCCAATCCTGATGTCCTTATTAGCACCACTTATAAAATTGAAATACAAAAAGAAATAATGTAGTTAGTGTCTTTGCTGCATTTTATGTGGACCTTCAAGTCAAAACTAAAATCAAAGAGATGGGAACACTGATTGGTTCTGGGGAATTGTACTGGTAGGAAGTAGGGACAAACCAAACTGAATATTATCGCCGTGAAATTCAAGTTGAGTACTTAGAGAAGAACTGAAATTTCTTTGCTTAATGCTCTGGGGAATCGTACTGGTACCAAGATAGCTTAAACTGAGACCTGCGTTTTCAGGCGCGACCCATTTATGCTTCTCTGATTTTGGTGATACTGTCAACTTCAATTGTGACTATTTGCTATTCACAATTGATTGTTCCTATTTCCTTTGTGTCTCTTGTGGGTATCACACTGTCTATTACTAAACAAGTCCTTGCAAATTTGGATAAATTTTGAAAATTCTTTATGAAGTATTGGTTTGTATGCACTGCAAATGAACGGCCAAGACGAGTATTGAGACGAAGCATTAAAGTTAAAGGTCATATGATTAGTGTGCAGCATAATTGCTCTATTGCACAAGTGTTTAGATGCTCTTTTTTTATGTTCTGGTTTTTGAAAATGGGGAAGGCAGTGAAATGGTTGTGCAACTTCCTAAACTGAAGTGCTTGTCTTCTATTGTTATTCGAAATGTTTATTTTCCACCGTTTTACTCATTCTCTAACTGGTTTAAGAGTTAATGGGGTGATGGATGTGTCTTGGTGTATCTGCACATGTTGGCACGGCAATAATGGAGTGTGAAGAGATTCTCAAAAGTTGCAGGGTTAACAAGTTTGCTGGTTTAATAGGCTTGAGTGGAGGGAAATCTATTATTTTTAGCCTTTGCATAAAAATGTTGATGGTATAAACGTTGTGTCATTCCGCAAGTGGATTAGCTGAATAGATGTTTGCACTGTCATGGTCCATTATGCGATAGCAAGTATAGCTGATATTTTTTCTCTTCTGATGCATGAATATATGGAAGGTTATTACCTTTATAGATTCGTGTACCACGAGTTAGAATGATGATTGAACATGCTAGTAGGTTGGAACCATTACATTTAATAGGTCACTTCTCTGCATTTTCCTTAGAGCTCAACATATGTTATTAACGTGGTGTTTACATGCTTTGTATCCAGAATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCTG</genome_strand>
        <mrna_strand>TTTTAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT..............................................................................................................................AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT............................................................................................GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG..................................................................................................................ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA........................................................GTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578774" ref_strand="-" ref_description="SGN-U578774 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147789690|emb|CAN74059.1| (e_value=1e-78) hypothetical; (*ATH) AT2G46020.1 (e_value=7e-68)  Symbol: None | transcription regulatory protein SNF2, putative, similar to SP:P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal dom... ; (*SWP) sp|Q6EVK6|BRM_ARATH (e_value=7e-67) ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM; ">
      <seq>ggaacccacaagggaaagttgggataataagctcatgaatgccagcggggcttatagtggagggactaagatgtctgaggtcattcaaagaaagtgcaaaactgtcgttaccaaactccaaaagaaaatagagaagggaggtcatcaaataattccgctgctacacggtctgtggaaaagaattggtagttctggttgcatgggtgggtcagaggatagtccgtttggtttacagacaattgatctacgcgttgatgagtctgagtacagcggagtgctcgaatttgtgtctgatgtgcagctgatgttaaaacgtgcagtacagtacttcggtttctcacatgaggtgagatctgaagcaaggaaagtgcatgatcttttctttgacatcttgaagatagaatttccggagactgattttcgagaagcaaggaattccatttcttttgctggaccagcagcttctactacacccgcgtcttcacggctgatgcctgtaggtcaaaacaagagacacaaactgataaatgaaatggaacccgactctagcccactgctgaagccgcagacacgtggaacactccatgccggtgaagatgccaaggctaagagtcatatggctcaaagagaaacaagatttggtggtagcagtagccgggagcttagccaacaggatgattcacgcccattcactcatcccggggagcttgttatttgcaaaaagaaaagaaaagatagagagaagttgggtttgaaacccgggagtagttctgctggtcctgtctcaccacctggtgtcagccgcagtatcagaagtcctggctcactcccaactgtgaaggaggggggaaggttaaaccagcagacaccccaacagttgaatggcagtggtagcagtagctctgttggctgggcaaaccctgtgaagagattgagatcagattctgcaagaagacggcaaagtcatttatgattattgttttgttaaaggtgtacactgtaatgcaagtagtagctgtactgagtgaggtgctgtgaataaccggcccttcggttttttcatacctcctgacctgtgtacttccccatttcatccccagcctcacctgtatgataaatttgcttttaaacataggtttcttaatgtctaccattggcaactgcttgtcagtgatgattctctccttctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="100488" stop="97773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100189" g_stop="100096" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100095" i_stop="99464" i_length="632">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99463" g_stop="99212" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="346" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98919" g_stop="98073" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="1193" r_length="847" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U578774" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578774" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100189" e_stop="100096"/>
          <exon e_start="99463" e_stop="99212"/>
          <exon e_start="98919" e_stop="98073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCCACAAGGGAAAGTTGGGATAATAAGCTCATGAATGCCAGCGGGACTTATAGTGGAGGGACTAAGATGTCTGAGGTCATTCAAAGAAAGGTAAAATTTAAAAATACTTGGAAGTAATTCCCCTGTTACTTAAGTATAAACTAATTTTTATTGGATTATTTTATGGATACTGCATCTATACTGGAGTTAGGAAGAAGGAATCGGTTGTGTGGCACATTTTGTCATAGGTTCTTCTTTATTATTCAAATGAGTATTAGAGCTGAAAGGATACAGAAGATTCATATAGCCAACTGTGATTAGATTGGGATTGAGGCCTAATTGATTGATTAATCTAAATTTTAAAACATTGAATTGTATTATATACCTTTCTAGTTGAAAGTTTATACCTCAATCTATGATCAGTTTCCTGTTATCTGAATATTTAACAAGGCGACAGCTTTGACAAATATATGCTTGATTAGGCTAGGACTATATTTCTTTTCCCTCAGTAATTATGGTTGGATGGCTGCCTTACTTGAACACAATGGTGGACTGGTTCAGAGTAGTGTTAATCAACTATGCCTCAGCCTCAAGCAAGTTGGAGCTCATTTTGTATCTGTTTGCATAAAGAAGAATAGAAGAAACATTACTCATGGCTGTGTGTCAGTCTTTCCCTCTCTTTTGTTGCCGATATTATTCCTGATCTTGTGCATGTGTTTTTTCTTTCTATTGGCTATTTGCAGTGCAAAACTGTCGTTACCAAACTCCAAAAGAAAATAGAGAAGGGAGGTCATCAAATAATTCCGCTGCTACACGGTCTGTGGAAAAGAATTGGTAGTTCTGGTTGCATGGGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAGGTATGATCTAATTCTGCTCAATGTTACGGTCATTATGGGCCATGTGTTCATATTCATCTCATCTCCTTGACACTACCTTGGCAGAAAAGATATACAACTGCCAGTCTAAGAAATTTATCTCTATGTTCGTTTTCCTGATGTTTACTACATCATTGAATAAGAATTATGTATAATGAACTGGCATAACCAGTGAAAAGAGATCATTGTTGAGTGGTTCACCAATTATCATGTCATGCTCATACCCAGCTTCCTCCATGTTCTTTCTGTAATTTTTCTACTATTATGATCACAGGTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAAGAAAAGATAGAGAGAAGTTGGGTTTGAAACCCGGGAGTAGTTCTGCTGGTCCTGTCTCACCACCTGGTGTCAGCCGCAGTATCAGAAGTCCTGGCTCACTCCCAACTGTGAAGGAGGGGGGAAGGTTAAACCAGCAGACACCCCAACAGTTGAATGGCAGTGGTAGCAGTAGCTCTGTTGGCTGGGCAAACCCTGTGAAGAGATTGAGATCAGATTCTGCAAGAAGACGGCAAAGTCATTTATGATTATTGTTTTGTTAAAGGTGTACACTGTAATGCAAGTAGTAGCTGTACTGAGTGAGGTGCTGTGAATAACCGGCCCTTCGGTATTTTCATACCTCCTGACCTGTGTACTTCCCCATTTCATCCCCAGCCTCACCTGTATGATAAATTTGCTTTTAAACATAGGTTTCTTAATGTCTACCATTGGCAACTGCTTGTCAGTGATAATTCTCTCCTTCTCCAT</genome_strand>
        <mrna_strand>GGAACCCACAAGGGAAAGTTGGGATAATAAGCTCATGAATGCCAGCGGGGCTTATAGTGGAGGGACTAAGATGTCTGAGGTCATTCAAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAACTGTCGTTACCAAACTCCAAAAGAAAATAGAGAAGGGAGGTCATCAAATAATTCCGCTGCTACACGGTCTGTGGAAAAGAATTGGTAGTTCTGGTTGCATGGGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAG....................................................................................................................................................................................................................................................................................................GTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAAGAAAAGATAGAGAGAAGTTGGGTTTGAAACCCGGGAGTAGTTCTGCTGGTCCTGTCTCACCACCTGGTGTCAGCCGCAGTATCAGAAGTCCTGGCTCACTCCCAACTGTGAAGGAGGGGGGAAGGTTAAACCAGCAGACACCCCAACAGTTGAATGGCAGTGGTAGCAGTAGCTCTGTTGGCTGGGCAAACCCTGTGAAGAGATTGAGATCAGATTCTGCAAGAAGACGGCAAAGTCATTTATGATTATTGTTTTGTTAAAGGTGTACACTGTAATGCAAGTAGTAGCTGTACTGAGTGAGGTGCTGTGAATAACCGGCCCTTCGGTTTTTTCATACCTCCTGACCTGTGTACTTCCCCATTTCATCCCCAGCCTCACCTGTATGATAAATTTGCTTTTAAACATAGGTTTCTTAATGTCTACCATTGGCAACTGCTTGTCAGTGATGATTCTCTCCTTCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571955" ref_strand="+" ref_description="SGN-U571955 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147789690|emb|CAN74059.1| (e_value=4e-43) hypothetical; (*ATH) AT2G46020.1 (e_value=4e-27)  Symbol: None | transcription regulatory protein SNF2, putative, similar to SP:P22082 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal dom... ; (*SWP) sp|Q6EVK6|BRM_ARATH (e_value=3e-26) ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM; ">
      <seq>ccgaggtcaaagaatgtcttattcagtagtggtgttggagtggactccagtggattagctcctgagatctgagaagaaaagggggaggcctaaaggtaagaaggttcctatttacacagaattggatgatgacaacggtgagttctctgaagcaagttctggggagaggaatggatattcagaccatgaagatggtgaaattggggaattcgaagatgatgaatttagtggtgcaggtggtgttacaccagttaacaaagaccagtcagaagaagatggtcccagttttgctgatagatatgaataccaccaaggtccacaaggtgctataaagactcgtgtacccgatcaattaggttcatcaggatcatcttcagacaaccaaaggccgacacagatagtatcatcgtctgtttcatctcagcagaaatttggatctctttctgcattggatgccagacccagttctcgggccaaaaggatggcagatgaattagaggaaggagaaattgcagtatctggagactcacatgtggatccccagcaatctggtagttggatccaagatcgtgatgaaggtgaagacgaacaggtgttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0034P21-cBhH0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0034P21.2" temp_strand="-" temp_description="C01HBa0034P21.2  AC238507.3 htgs_phase:2 submitted_to_sgn_as:C01HBa0034P21 upload_account_name:manual">
        <position start="101503" stop="100219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101209" g_stop="100727" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100726" i_stop="100636" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100635" g_stop="100519" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="601" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0034P21.2" gen_strand="-" ref_id="SGN-U571955" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0034P21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101209" e_stop="100727"/>
          <exon e_start="100635" e_stop="100519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCTCAAAGAATGTCTTATTCAGTAGTGGTGTTGGTGTGGACTCCAGTGGATTAGCTCCTGA-ATCTGAGAAGAAAAGGGGGCGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGCCCATGAAGATGGTGAAATTGGGGAATTCGAAGATGATGAATTTAGTGGTGCAGTTGGTGTTACACCAGTTAACAAAGACCAGTCAGAAGAAGATGGTCCCAGTTTTGCTGATAGATATGAATACCACCAAGGTCCACAAGGTGCTATAAAGACTCGTGTACCCGATCAATTAGGTTCATCAGGATCATCTTCAGACAACCAAAGGCCGACACAGATAGTATCATCGTCTGTTTCATCTCAGCAGAAATTTGGATCTCTTTCTGCATTGGATGCCAGACCCAGTTCTCGGGCCAAAAGGATGGTGAGAAGATTCATTCCCTTTTCCTTTGAAGGTGTACATCCAGTACTCATAACACTTAATAACTTCCATATTTTTCATCTTTAAATTTCAGGCAGATGAATTAGAGGAAGGAGAAATTGCAGTATCTGGAGACTCACATGTGGATCTCCAGCAATCTGGTAGTTGGATCCAAGATCGTGATGAAGGTGAAGACGAACAGGTGTTGCAG</genome_strand>
        <mrna_strand>CCGAGGTCAAAGAATGTCTTATTCAGTAGTGGTGTTGGAGTGGACTCCAGTGGATTAGCTCCTGAGATCTGAGAAGAAAAGGGGGAGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGACCATGAAGATGGTGAAATTGGGGAATTCGAAGATGATGAATTTAGTGGTGCAGGTGGTGTTACACCAGTTAACAAAGACCAGTCAGAAGAAGATGGTCCCAGTTTTGCTGATAGATATGAATACCACCAAGGTCCACAAGGTGCTATAAAGACTCGTGTACCCGATCAATTAGGTTCATCAGGATCATCTTCAGACAACCAAAGGCCGACACAGATAGTATCATCGTCTGTTTCATCTCAGCAGAAATTTGGATCTCTTTCTGCATTGGATGCCAGACCCAGTTCTCGGGCCAAAAGGATG...........................................................................................GCAGATGAATTAGAGGAAGGAGAAATTGCAGTATCTGGAGACTCACATGTGGATCCCCAGCAATCTGGTAGTTGGATCCAAGATCGTGATGAAGGTGAAGACGAACAGGTGTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="18067" PGL_stop="14817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18067" e_stop="17811"/>
            <exon e_start="17607" e_stop="17505"/>
            <exon e_start="17366" e_stop="17175"/>
            <exon e_start="17076" e_stop="16842"/>
            <exon e_start="16754" e_stop="16427"/>
            <exon e_start="16336" e_stop="16093"/>
            <exon e_start="15986" e_stop="15277"/>
            <exon e_start="15109" e_stop="14817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="0.999"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="18067" e_stop="17811" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17810" i_stop="17608" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17607" e_stop="17505" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17504" i_stop="17367" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17366" e_stop="17175" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.771">
            <gDNA_intron_boundary i_start="17174" i_stop="17077" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17076" e_stop="16842" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16841" i_stop="16755" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="16754" e_stop="16427" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="16426" i_stop="16337" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="16336" e_stop="16093" e_length="244"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16092" i_stop="15987" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="15986" e_stop="15277" e_length="710"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15276" i_stop="15110" i_length="167"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="15109" e_stop="14817" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18067" stop="17811"/>
              <exon start="17607" stop="17505"/>
              <exon start="17366" stop="17175"/>
              <exon start="17076" stop="16842"/>
              <exon start="16754" stop="16427"/>
              <exon start="16336" stop="16093"/>
              <exon start="15986" stop="15277"/>
              <exon start="15109" stop="14817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCAAGTGTTACCAATGATCTTCAAGCAACTATAATGGCTCTAATATTAATTGTTACTATTGGGTATTTTCTACTTTTGATAGTAACACCAACTAATATGTATAGACAAATATGGACACCCAAGATTAAAGCTCACACTACCAACTCCACATACTTTGGAGCTCAAG : GAAGGACTTTGTTGATGAACACATTTCCTCTCATATTTATTGCTGTCTTGGGATGTGTATACCTCCATTTATGGAAGAAATCCAATAATAAAAACATCAACAG : ATTTGAGAAGAAACAAAAGTTGGCTATATGGAGGAGGCCAATAATCATGAAGGGGCTGGGAATTGTATCAAGAATAGAGCTTGGTTTTTTTGTGATGTTTATTGCACTCTTAGTTTGGACTTTTGCTTCTTACTTGCACATTATTTTTCCCACTATTACACCAAAATCCGTAGCAAACAGTGGAGAAAAAGT : ATGGGAAGCCAAGTTGGAAGATTCAGGGCTAAGATTGGGACTTGTTGGAAATATATGCTTAACATTTCTATTTGTTCCAGTCACAAGAGGCTCATCTGTGTTACAAGTATTTGGTTTGACATCAGAAGCTAGTGTTAAATATCATATATGGCTTGGCCATATTGTAATGACTCTTTTTTCTGCTCATGGCATTTGTTACATTATCTATTGGGCTTCCACTCATCAATTGTCTGAG : ATGCTGAAATGGGGAAAAACTGATATATCAAATTTGGCTGGTGAATTGGCATTGCTTTCTGGATTGGTGTTGTGGATAGCAACATTTCCTAAAATTAGGAGAAAGATGTTTGAACTCTTCTTCTACACTCATCATTTCTACATTCTCTTTGTCGTCTTCTTCGTCTTCCATGTTGGTGTTTCTTACGCTTGCATCATGCTTCCTGGTTTCTTCCTCTTCATGGTTGATCGATTCTTGAGATTCTTACAGTCACGATCAAATGTTCGTTTAGTCTCTGCTCGTGTTCTGCCATGTGAAACTCTTGAACTCAATTTCTCCAAGACTAAAG : GTTTAAGTTACACACCAACTAGCATCATGTTTGTGAATGTACCTAGCATTTCAAAATTGCAATGGCATCCTTTTACCATCACTTCAAGTAGTAATTTGGAGCCAGAGAAAATCAGTGTTGCCATTAAGGGTGAAGGAAGTTGGTCCAAAAAACTCTACCAGATGATCTCTTCCCCTAATTCTGTCGATCGTCTTAACGTCTCTGTTGAAGGACCTTATGGACCTCCTTCCACACATTTTCTAAG : GCATGATTTATTGGTTATGATAAGTGGAGGAAGTGGAATTACTCCTTTCATTTCCATCATTAGGGAGCTAATTCATACAAGTGAGTCACAAAAATGCAAGACACCAGAAATCCTACTTATTAGTGTGTTCAAGAATTCGGAAGATCTCACCATGTTGGACCTTCTCCTTCCTATATCTGGTGCTCCATCAGAAACTTGTAAACTGGGGCTACAAATCGAGGCTTTTGTAACGAGAGAAAAGCAACCAGTATCGACAGAAGACAAGAAGAATGTGAGGACTATATGGTTCAAGCCCAACCCATCTGATAAGCCTATCACTCCAATTCTTGGACAAAACAATTGGCTCTGGCTTGGTGCTATCATATCATGTTCCTTCCTCATTTTCTTGATTTCCTTGGGGGTCTTGAATAGATATTACATATATCCAATCGACAATAATACTAATGACATATTTTCGTATCCAATAAAGGCGGTGTTGAATATGCTAATCATTTGCATATCTATAGTCATCACAAGTAGTGCTGCATTTGTTTGGAACAAGAGACAGAGTGGGACTGATGCAAAACAGATTCAGAACATGGAAGGTGCAACTCCTATGGCTTCGCCTAATTCTTGGTTCTATAATGCCGATAGGGAGATGGAAAGTTTGCCCCAACAATCACTTTTTCAATCAACTAATCTCCATTTTGGTGAAAGGCCTGACCTCAAAA : GAATATTGTTTGAGAGGAAAGAATCAAGTGTTGGAGTTTTAGTGTGTGGCCCAAAAAGGATGAGACATGAAGTTGCTAACATATGTTCATCTGGTTTAGCATCCAATCTTCATTTTGAGTCCATCAGTTTCAGTTGGTGAGTTAGAGAATATAATGCATTCTATGCAATGGAGAAAATAAGATGGAAGTTTTTTTGTTTGTTTGTGTGCTTATGCTTTGGTTGATTGAATTTTGCATGTAACATGCTTCCTTTGTACTGAGTAAATGTAAAAAGATACAGTTAATTCTGTTTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  K  C  Y  Q  *  S  S  S  N  Y  N  G  S  N  I  N  C  Y  Y  W  V  F  S  T  F  D  S  N  T  N  *  Y  V  *  T  N  M  D  T  Q  D  *  S  S  H  Y  Q  L  H  I  L  W  S  S  R :   K  D  F  V  D  E  H  I  S  S  H  I  Y  C  C  L  G  M  C  I  P  P  F  M  E  E  I  Q  *  *  K  H  Q  Q  :  I  *  E  E  T  K  V  G  Y  M  E  E  A  N  N  H  E  G  A  G  N  C  I  K  N  R  A  W  F  F  C  D  V  Y  C  T  L  S  L  D  F  C  F  L  L  A  H  Y  F  S  H  Y  Y  T  K  I  R  S  K  Q  W  R  K  S  :  M  G  S  Q  V  G  R  F  R  A  K  I  G  T  C  W  K  Y  M  L  N  I  S  I  C  S  S  H  K  R  L  I  C  V  T  S  I  W  F  D  I  R  S  *  C  *  I  S  Y  M  A  W  P  Y  C  N  D  S  F  F  C  S  W  H  L  L  H  Y  L  L  G  F  H  S  S  I  V  *   : D  A  E  M  G  K  N  *  Y  I  K  F  G  W  *  I  G  I  A  F  W  I  G  V  V  D  S  N  I  S  *  N  *  E  K  D  V  *  T  L  L  L  H  S  S  F  L  H  S  L  C  R  L  L  R  L  P  C  W  C  F  L  R  L  H  H  A  S  W  F  L  P  L  H  G  *  S  I  L  E  I  L  T  V  T  I  K  C  S  F  S  L  C  S  C  S  A  M  *  N  S  *  T  Q  F  L  Q  D  *  R :   F  K  L  H  T  N  *  H  H  V  C  E  C  T  *  H  F  K  I  A  M  A  S  F  Y  H  H  F  K  *  *  F  G  A  R  E  N  Q  C  C  H  *  G  *  R  K  L  V  Q  K  T  L  P  D  D  L  F  P  *  F  C  R  S  S  *  R  L  C  *  R  T  L  W  T  S  F  H  T  F  S  K  :  A  *  F  I  G  Y  D  K  W  R  K  W  N  Y  S  F  H  F  H  H  *  G  A  N  S  Y  K  *  V  T  K  M  Q  D  T  R  N  P  T  Y  *  C  V  Q  E  F  G  R  S  H  H  V  G  P  S  P  S  Y  I  W  C  S  I  R  N  L  *  T  G  A  T  N  R  G  F  C  N  E  R  K  A  T  S  I  D  R  R  Q  E  E  C  E  D  Y  M  V  Q  A  Q  P  I  *  *  A  Y  H  S  N  S  W  T  K  Q  L  A  L  A  W  C  Y  H  I  M  F  L  P  H  F  L  D  F  L  G  G  L  E  *  I  L  H  I  S  N  R  Q  *  Y  *  *  H  I  F  V  S  N  K  G  G  V  E  Y  A  N  H  L  H  I  Y  S  H  H  K  *  C  C  I  C  L  E  Q  E  T  E  W  D  *  C  K  T  D  S  E  H  G  R  C  N  S  Y  G  F  A  *  F  L  V  L  *  C  R  *  G  D  G  K  F  A  P  T  I  T  F  S  I  N  *  S  P  F  W  *  K  A  *  P  Q  K :   N  I  V  *  E  E  R  I  K  C  W  S  F  S  V  W  P  K  K  D  E  T  *  S  C  *  H  M  F  I  W  F  S  I  Q  S  S  F  *  V  H  Q  F  Q  L  V  S  *  R  I  *  C  I  L  C  N  G  E  N  K  M  E  V  F  L  F  V  C  V  L  M  L  W  L  I  E  F  C  M  *  H  A  S  F  V  L  S  K  C  K  K  I  Q  L  I  L  F  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  S  S  V  T  N  D  L  Q  A  T  I  M  A  L  I  L  I  V  T  I  G  Y  F  L  L  L  I  V  T  P  T  N  M  Y  R  Q  I  W  T  P  K  I  K  A  H  T  T  N  S  T  Y  F  G  A  Q   : G  R  T  L  L  M  N  T  F  P  L  I  F  I  A  V  L  G  C  V  Y  L  H  L  W  K  K  S  N  N  K  N  I  N  R :   F  E  K  K  Q  K  L  A  I  W  R  R  P  I  I  M  K  G  L  G  I  V  S  R  I  E  L  G  F  F  V  M  F  I  A  L  L  V  W  T  F  A  S  Y  L  H  I  I  F  P  T  I  T  P  K  S  V  A  N  S  G  E  K  V :   W  E  A  K  L  E  D  S  G  L  R  L  G  L  V  G  N  I  C  L  T  F  L  F  V  P  V  T  R  G  S  S  V  L  Q  V  F  G  L  T  S  E  A  S  V  K  Y  H  I  W  L  G  H  I  V  M  T  L  F  S  A  H  G  I  C  Y  I  I  Y  W  A  S  T  H  Q  L  S  E  :  M  L  K  W  G  K  T  D  I  S  N  L  A  G  E  L  A  L  L  S  G  L  V  L  W  I  A  T  F  P  K  I  R  R  K  M  F  E  L  F  F  Y  T  H  H  F  Y  I  L  F  V  V  F  F  V  F  H  V  G  V  S  Y  A  C  I  M  L  P  G  F  F  L  F  M  V  D  R  F  L  R  F  L  Q  S  R  S  N  V  R  L  V  S  A  R  V  L  P  C  E  T  L  E  L  N  F  S  K  T  K   : G  L  S  Y  T  P  T  S  I  M  F  V  N  V  P  S  I  S  K  L  Q  W  H  P  F  T  I  T  S  S  S  N  L  E  P  E  K  I  S  V  A  I  K  G  E  G  S  W  S  K  K  L  Y  Q  M  I  S  S  P  N  S  V  D  R  L  N  V  S  V  E  G  P  Y  G  P  P  S  T  H  F  L  R :   H  D  L  L  V  M  I  S  G  G  S  G  I  T  P  F  I  S  I  I  R  E  L  I  H  T  S  E  S  Q  K  C  K  T  P  E  I  L  L  I  S  V  F  K  N  S  E  D  L  T  M  L  D  L  L  L  P  I  S  G  A  P  S  E  T  C  K  L  G  L  Q  I  E  A  F  V  T  R  E  K  Q  P  V  S  T  E  D  K  K  N  V  R  T  I  W  F  K  P  N  P  S  D  K  P  I  T  P  I  L  G  Q  N  N  W  L  W  L  G  A  I  I  S  C  S  F  L  I  F  L  I  S  L  G  V  L  N  R  Y  Y  I  Y  P  I  D  N  N  T  N  D  I  F  S  Y  P  I  K  A  V  L  N  M  L  I  I  C  I  S  I  V  I  T  S  S  A  A  F  V  W  N  K  R  Q  S  G  T  D  A  K  Q  I  Q  N  M  E  G  A  T  P  M  A  S  P  N  S  W  F  Y  N  A  D  R  E  M  E  S  L  P  Q  Q  S  L  F  Q  S  T  N  L  H  F  G  E  R  P  D  L  K   : R  I  L  F  E  R  K  E  S  S  V  G  V  L  V  C  G  P  K  R  M  R  H  E  V  A  N  I  C  S  S  G  L  A  S  N  L  H  F  E  S  I  S  F  S  W  *  V  R  E  Y  N  A  F  Y  A  M  E  K  I  R  W  K  F  F  C  L  F  V  C  L  C  F  G  *  L  N  F  A  C  N  M  L  P  L  Y  *  V  N  V  K  R  Y  S  *  F  C  F </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  H  Q  V  L  P  M  I  F  K  Q  L  *  W  L  *  Y  *  L  L  L  L  G  I  F  Y  F  *  *  *  H  Q  L  I  C  I  D  K  Y  G  H  P  R  L  K  L  T  L  P  T  P  H  T  L  E  L  K  :  E  G  L  C  *  *  T  H  F  L  S  Y  L  L  L  S  W  D  V  Y  T  S  I  Y  G  R  N  P  I  I  K  T  S  T   : D  L  R  R  N  K  S  W  L  Y  G  G  G  Q  *  S  *  R  G  W  E  L  Y  Q  E  *  S  L  V  F  L  *  C  L  L  H  S  *  F  G  L  L  L  L  T  C  T  L  F  F  P  L  L  H  Q  N  P  *  Q  T  V  E  K  K   : Y  G  K  P  S  W  K  I  Q  G  *  D  W  D  L  L  E  I  Y  A  *  H  F  Y  L  F  Q  S  Q  E  A  H  L  C  Y  K  Y  L  V  *  H  Q  K  L  V  L  N  I  I  Y  G  L  A  I  L  *  *  L  F  F  L  L  M  A  F  V  T  L  S  I  G  L  P  L  I  N  C  L  R :   C  *  N  G  E  K  L  I  Y  Q  I  W  L  V  N  W  H  C  F  L  D  W  C  C  G  *  Q  H  F  L  K  L  G  E  R  C  L  N  S  S  S  T  L  I  I  S  T  F  S  L  S  S  S  S  S  S  M  L  V  F  L  T  L  A  S  C  F  L  V  S  S  S  S  W  L  I  D  S  *  D  S  Y  S  H  D  Q  M  F  V  *  S  L  L  V  F  C  H  V  K  L  L  N  S  I  S  P  R  L  K  :  V  *  V  T  H  Q  L  A  S  C  L  *  M  Y  L  A  F  Q  N  C  N  G  I  L  L  P  S  L  Q  V  V  I  W  S  Q  R  K  S  V  L  P  L  R  V  K  E  V  G  P  K  N  S  T  R  *  S  L  P  L  I  L  S  I  V  L  T  S  L  L  K  D  L  M  D  L  L  P  H  I  F  *   : G  M  I  Y  W  L  *  *  V  E  E  V  E  L  L  L  S  F  P  S  L  G  S  *  F  I  Q  V  S  H  K  N  A  R  H  Q  K  S  Y  L  L  V  C  S  R  I  R  K  I  S  P  C  W  T  F  S  F  L  Y  L  V  L  H  Q  K  L  V  N  W  G  Y  K  S  R  L  L  *  R  E  K  S  N  Q  Y  R  Q  K  T  R  R  M  *  G  L  Y  G  S  S  P  T  H  L  I  S  L  S  L  Q  F  L  D  K  T  I  G  S  G  L  V  L  S  Y  H  V  P  S  S  F  S  *  F  P  W  G  S  *  I  D  I  T  Y  I  Q  S  T  I  I  L  M  T  Y  F  R  I  Q  *  R  R  C  *  I  C  *  S  F  A  Y  L  *  S  S  Q  V  V  L  H  L  F  G  T  R  D  R  V  G  L  M  Q  N  R  F  R  T  W  K  V  Q  L  L  W  L  R  L  I  L  G  S  I  M  P  I  G  R  W  K  V  C  P  N  N  H  F  F  N  Q  L  I  S  I  L  V  K  G  L  T  S  K  :  E  Y  C  L  R  G  K  N  Q  V  L  E  F  *  C  V  A  Q  K  G  *  D  M  K  L  L  T  Y  V  H  L  V  *  H  P  I  F  I  L  S  P  S  V  S  V  G  E  L  E  N  I  M  H  S  M  Q  W  R  K  *  D  G  S  F  F  V  C  L  C  A  Y  A  L  V  D  *  I  L  H  V  T  C  F  L  C  T  E  *  M  *  K  D  T  V  N  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18066" stop="17811"/>
                    <exon start="17607" stop="17505"/>
                    <exon start="17366" stop="17175"/>
                    <exon start="17076" stop="16842"/>
                    <exon start="16754" stop="16427"/>
                    <exon start="16336" stop="16093"/>
                    <exon start="15986" stop="15277"/>
                    <exon start="15109" stop="14970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2205</number_coding_nucleotides>
                  <number_encoded_amino_acids>735</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFSSSVTNDLQATIMALILIVTIGYFLLLIVTPTNMYRQIWTPKIKAHTTNSTYFGAQGRTLLMNTFPLIFIAVLGCVYLHLWKKSNNKNINRFEKKQKLAIWRRPIIMKGLGIVSRIELGFFVMFIALLVWTFASYLHIIFPTITPKSVANSGEKVWEAKLEDSGLRLGLVGNICLTFLFVPVTRGSSVLQVFGLTSEASVKYHIWLGHIVMTLFSAHGICYIIYWASTHQLSEMLKWGKTDISNLAGELALLSGLVLWIATFPKIRRKMFELFFYTHHFYILFVVFFVFHVGVSYACIMLPGFFLFMVDRFLRFLQSRSNVRLVSARVLPCETLELNFSKTKGLSYTPTSIMFVNVPSISKLQWHPFTITSSSNLEPEKISVAIKGEGSWSKKLYQMISSPNSVDRLNVSVEGPYGPPSTHFLRHDLLVMISGGSGITPFISIIRELIHTSESQKCKTPEILLISVFKNSEDLTMLDLLLPISGAPSETCKLGLQIEAFVTREKQPVSTEDKKNVRTIWFKPNPSDKPITPILGQNNWLWLGAIISCSFLIFLISLGVLNRYYIYPIDNNTNDIFSYPIKAVLNMLIICISIVITSSAAFVWNKRQSGTDAKQIQNMEGATPMASPNSWFYNADREMESLPQQSLFQSTNLHFGERPDLKRILFERKESSVGVLVCGPKRMRHEVANICSSGLASNLHFESISFSW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19093" PGL_stop="21195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19093" e_stop="19367"/>
            <exon e_start="19825" e_stop="19933"/>
            <exon e_start="20012" e_stop="20194"/>
            <exon e_start="21027" e_stop="21195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.499" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19093" e_stop="19367" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19368" i_stop="19824" i_length="457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19825" e_stop="19933" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.499" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19934" i_stop="20011" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20012" e_stop="20194" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20195" i_stop="21026" i_length="832"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21027" e_stop="21195" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19093" stop="19367"/>
              <exon start="19825" stop="19933"/>
              <exon start="20012" stop="20194"/>
              <exon start="21027" stop="21195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19112" stop="19367"/>
              <exon start="19825" stop="19933"/>
              <exon start="20012" stop="20194"/>
              <exon start="21027" stop="21137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGTATATAACAAGTTCACTACTACTATATATTTCCAATTTATATTCAACAAAAGCTAATTTTGTTACAAGAAAAATGGAGGTGATGAATAGGAGATCATCATCATTTTCTGATGGAAAAATTAGAATGATACAAGGAGCAATATTAGCTTTAGCACTTACAATATTTCTTGGGAATTTAATGATGTGGATTATTATGCCAACTTTTACATATTATCAAAAATGGGTCCCTGTTCTTGTTGCTGCCACCAATTCCACATTCTTTGATATTCAAG : GTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTG : CAATAAGGATTGGTTGAAGATATTGAAAAAGCCAAAAATCATCAAATCATTAGGAATAGTGACATGGATAGAACTATTTTTTCTAGCCATGTTTATTATTCTATGTGTTTGGTATTTCTCAGCATTTGTCTATTTTCACTATAGTACCATTACTACTTATGCAGCAACTAAAGGAGTTGAAGT : GTGGCAAGCAAGAATCGATAGGTTGGCTTTAGTAATAGGGTTAACAGGGAATATATGTTTAACATTTCTATTTTATCCAGTAAGTAGAGGCTCTTCAATTTTGCCTCTTTTGGGATTAACTTCAGAAGGCAGCATCAAATATCATATATGGTTGGGACATATGGCTATG</gDNA_template>
            <first_frame> D  V  Y  N  K  F  T  T  T  I  Y  F  Q  F  I  F  N  K  S  *  F  C  Y  K  K  N  G  G  D  E  *  E  I  I  I  I  F  *  W  K  N  *  N  D  T  R  S  N  I  S  F  S  T  Y  N  I  S  W  E  F  N  D  V  D  Y  Y  A  N  F  Y  I  L  S  K  M  G  P  C  S  C  C  C  H  Q  F  H  I  L  *  Y  S  R :   S  H  Y  D  E  L  H  I  P  N  L  I  H  S  C  F  G  L  S  L  C  S  S  R  E  E  K  K  *  Y  C  H  F  I  I  L  :  Q  *  G  L  V  E  D  I  E  K  A  K  N  H  Q  I  I  R  N  S  D  M  D  R  T  I  F  S  S  H  V  Y  Y  S  M  C  L  V  F  L  S  I  C  L  F  S  L  *  Y  H  Y  Y  L  C  S  N  *  R  S  *  S  :  V  A  S  K  N  R  *  V  G  F  S  N  R  V  N  R  E  Y  M  F  N  I  S  I  L  S  S  K  *  R  L  F  N  F  A  S  F  G  I  N  F  R  R  Q  H  Q  I  S  Y  M  V  G  T  Y  G  Y  </first_frame>
            <second_frame>  M  Y  I  T  S  S  L  L  L  Y  I  S  N  L  Y  S  T  K  A  N  F  V  T  R  K  M  E  V  M  N  R  R  S  S  S  F  S  D  G  K  I  R  M  I  Q  G  A  I  L  A  L  A  L  T  I  F  L  G  N  L  M  M  W  I  I  M  P  T  F  T  Y  Y  Q  K  W  V  P  V  L  V  A  A  T  N  S  T  F  F  D  I  Q   : G  P  I  M  M  N  F  T  F  P  I  L  F  I  A  V  L  G  C  L  Y  V  H  L  E  K  K  K  S  D  I  V  T  S  S  Y  C :   N  K  D  W  L  K  I  L  K  K  P  K  I  I  K  S  L  G  I  V  T  W  I  E  L  F  F  L  A  M  F  I  I  L  C  V  W  Y  F  S  A  F  V  Y  F  H  Y  S  T  I  T  T  Y  A  A  T  K  G  V  E  V :   W  Q  A  R  I  D  R  L  A  L  V  I  G  L  T  G  N  I  C  L  T  F  L  F  Y  P  V  S  R  G  S  S  I  L  P  L  L  G  L  T  S  E  G  S  I  K  Y  H  I  W  L  G  H  M  A  M </second_frame>
            <third_frame>   C  I  *  Q  V  H  Y  Y  Y  I  F  P  I  Y  I  Q  Q  K  L  I  L  L  Q  E  K  W  R  *  *  I  G  D  H  H  H  F  L  M  E  K  L  E  *  Y  K  E  Q  Y  *  L  *  H  L  Q  Y  F  L  G  I  *  *  C  G  L  L  C  Q  L  L  H  I  I  K  N  G  S  L  F  L  L  L  P  P  I  P  H  S  L  I  F  K  :  V  P  L  *  *  T  S  H  S  Q  S  Y  S  *  L  F  W  V  V  F  M  F  I  *  R  R  K  K  V  I  L  S  L  H  H  I   : A  I  R  I  G  *  R  Y  *  K  S  Q  K  S  S  N  H  *  E  *  *  H  G  *  N  Y  F  F  *  P  C  L  L  F  Y  V  F  G  I  S  Q  H  L  S  I  F  T  I  V  P  L  L  L  M  Q  Q  L  K  E  L  K   : C  G  K  Q  E  S  I  G  W  L  *  *  *  G  *  Q  G  I  Y  V  *  H  F  Y  F  I  Q  *  V  E  A  L  Q  F  C  L  F  W  D  *  L  Q  K  A  A  S  N  I  I  Y  G  W  D  I  W  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19094" stop="19367"/>
                    <exon start="19825" stop="19933"/>
                    <exon start="20012" stop="20194"/>
                    <exon start="21027" stop="21195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYITSSLLLYISNLYSTKANFVTRKMEVMNRRSSSFSDGKIRMIQGAILALALTIFLGNLMMWIIMPTFTYYQKWVPVLVAATNSTFFDIQGPIMMNFTFPILFIAVLGCLYVHLEKKKSDIVTSSYCNKDWLKILKKPKIIKSLGIVTWIELFFLAMFIILCVWYFSAFVYFHYSTITTYAATKGVEVWQARIDRLALVIGLTGNICLTFLFYPVSRGSSILPLLGLTSEGSIKYHIWLGHMAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19394" e_stop="20027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="19394" e_stop="20027" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19394" stop="20027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCCCATCCTCGAGGCGTGAATTTAGGATTTGAATATTATAAAATTGAGTTTGGAAGTATACTAGTACTAAAAACACGCGAATTTCTGATGGAAATTTTCGTCCTTGGAGAAAAATTGTTTGGCAATTTGCGTGTTTTTAATAGTGTATGTGTATAAGGTTCGTCAGTGGATCTTTTAATATATCTGTGTATAAGATTTAAATCAAAATTACATACTGAGTTTGAATGAGCTCGTCAGTACTTAATAACTACATTCACTCTTGCCTTTTTGGAAATTTTCTAATAAAATTAGAACGACACAGAAAATAAACCTAGCAAGAAAATTGGACTTCCTTTATTTTCTTTTGCATGTTTCTATTTTTTTTTCATGTCGAGATGAGGGTAAATAAAAGAAATTATAATTTTGATTTTTGGTGTTATTTTTACAGGTCCCATTATGATGAACTTCACATTCCCAATCTTATTCATAGCTGTTTTGGGTTGTCTTTATGTTCATCTAGAGAAGAAAAAAAGTGATATTGTCACTTCATCATATTGGTATATGATATATATATTTTTTTATTTTGGTTTGTGATTATGATATATTTAATTGTTTTTATTGTTGTTTAATTTCAGCAATAAGGATTGGTTG</gDNA_template>
            <first_frame> I  F  P  S  S  R  R  E  F  R  I  *  I  L  *  N  *  V  W  K  Y  T  S  T  K  N  T  R  I  S  D  G  N  F  R  P  W  R  K  I  V  W  Q  F  A  C  F  *  *  C  M  C  I  R  F  V  S  G  S  F  N  I  S  V  Y  K  I  *  I  K  I  T  Y  *  V  *  M  S  S  S  V  L  N  N  Y  I  H  S  C  L  F  G  N  F  L  I  K  L  E  R  H  R  K  *  T  *  Q  E  N  W  T  S  F  I  F  F  C  M  F  L  F  F  F  H  V  E  M  R  V  N  K  R  N  Y  N  F  D  F  W  C  Y  F  Y  R  S  H  Y  D  E  L  H  I  P  N  L  I  H  S  C  F  G  L  S  L  C  S  S  R  E  E  K  K  *  Y  C  H  F  I  I  L  V  Y  D  I  Y  I  F  L  F  W  F  V  I  M  I  Y  L  I  V  F  I  V  V  *  F  Q  Q  *  G  L  V  </first_frame>
            <second_frame>  F  S  H  P  R  G  V  N  L  G  F  E  Y  Y  K  I  E  F  G  S  I  L  V  L  K  T  R  E  F  L  M  E  I  F  V  L  G  E  K  L  F  G  N  L  R  V  F  N  S  V  C  V  *  G  S  S  V  D  L  L  I  Y  L  C  I  R  F  K  S  K  L  H  T  E  F  E  *  A  R  Q  Y  L  I  T  T  F  T  L  A  F  L  E  I  F  *  *  N  *  N  D  T  E  N  K  P  S  K  K  I  G  L  P  L  F  S  F  A  C  F  Y  F  F  F  M  S  R  *  G  *  I  K  E  I  I  I  L  I  F  G  V  I  F  T  G  P  I  M  M  N  F  T  F  P  I  L  F  I  A  V  L  G  C  L  Y  V  H  L  E  K  K  K  S  D  I  V  T  S  S  Y  W  Y  M  I  Y  I  F  F  Y  F  G  L  *  L  *  Y  I  *  L  F  L  L  L  F  N  F  S  N  K  D  W  L </second_frame>
            <third_frame>   F  P  I  L  E  A  *  I  *  D  L  N  I  I  K  L  S  L  E  V  Y  *  Y  *  K  H  A  N  F  *  W  K  F  S  S  L  E  K  N  C  L  A  I  C  V  F  L  I  V  Y  V  Y  K  V  R  Q  W  I  F  *  Y  I  C  V  *  D  L  N  Q  N  Y  I  L  S  L  N  E  L  V  S  T  *  *  L  H  S  L  L  P  F  W  K  F  S  N  K  I  R  T  T  Q  K  I  N  L  A  R  K  L  D  F  L  Y  F  L  L  H  V  S  I  F  F  S  C  R  D  E  G  K  *  K  K  L  *  F  *  F  L  V  L  F  L  Q  V  P  L  *  *  T  S  H  S  Q  S  Y  S  *  L  F  W  V  V  F  M  F  I  *  R  R  K  K  V  I  L  S  L  H  H  I  G  I  *  Y  I  Y  F  F  I  L  V  C  D  Y  D  I  F  N  C  F  Y  C  C  L  I  S  A  I  R  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19712" stop="19912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QENWTSFIFFCMFLFFFHVEMRVNKRNYNFDFWCYFYRSHYDELHIPNLIHSCFGLSLCSSREEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20925" PGL_stop="20394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20925" e_stop="20394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="20925" e_stop="20394" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20925" stop="20394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCAATTATCACAATCCCTCAAAACTAATATTGCAAAATAAAATAAGTGATTAATAAAGTGATATAAAAAATTAAAAATTAAATTTTTACACTTGAGTCAAGACTACTTAAATATTCATAAATATAATTCATTCACTCTTTTCGGTCTCAAATATTAGTCATTTAATAAATTGAACTTGTTTCAAAATATTTGACTATTTAAGTATTCATGAATATAATAACAATGTTCCTTCAATTATTATCACGTTTTTCAATTTCAAATATTAGTCGTTTAACAAATTAAACTCGTTTCAAAATATTTGACTACGTAAGTATTCTTCGTGAATATAATAGTGAACCATCATAATATTCATTCATTTATTGTCACTCTCTTCCGTCTCAAATGTAAGTCGTTTGAAAAATTAAAACTTATTCCAAAATAATATTTGACTTTATAGACAAGCAAAAATAATTTAATTTACACGCTTTTTTCTAAATTAATTCATCCATAATTCTCTAATTAGTGAAGTATTAATTGATGAAGTGGGACAC</gDNA_template>
            <first_frame> D  Q  L  S  Q  S  L  K  T  N  I  A  K  *  N  K  *  L  I  K  *  Y  K  K  L  K  I  K  F  L  H  L  S  Q  D  Y  L  N  I  H  K  Y  N  S  F  T  L  F  G  L  K  Y  *  S  F  N  K  L  N  L  F  Q  N  I  *  L  F  K  Y  S  *  I  *  *  Q  C  S  F  N  Y  Y  H  V  F  Q  F  Q  I  L  V  V  *  Q  I  K  L  V  S  K  Y  L  T  T  *  V  F  F  V  N  I  I  V  N  H  H  N  I  H  S  F  I  V  T  L  F  R  L  K  C  K  S  F  E  K  L  K  L  I  P  K  *  Y  L  T  L  *  T  S  K  N  N  L  I  Y  T  L  F  S  K  L  I  H  P  *  F  S  N  *  *  S  I  N  *  *  S  G  T  </first_frame>
            <second_frame>  T  N  Y  H  N  P  S  K  L  I  L  Q  N  K  I  S  D  *  *  S  D  I  K  N  *  K  L  N  F  Y  T  *  V  K  T  T  *  I  F  I  N  I  I  H  S  L  F  S  V  S  N  I  S  H  L  I  N  *  T  C  F  K  I  F  D  Y  L  S  I  H  E  Y  N  N  N  V  P  S  I  I  I  T  F  F  N  F  K  Y  *  S  F  N  K  L  N  S  F  Q  N  I  *  L  R  K  Y  S  S  *  I  *  *  *  T  I  I  I  F  I  H  L  L  S  L  S  S  V  S  N  V  S  R  L  K  N  *  N  L  F  Q  N  N  I  *  L  Y  R  Q  A  K  I  I  *  F  T  R  F  F  L  N  *  F  I  H  N  S  L  I  S  E  V  L  I  D  E  V  G  H </second_frame>
            <third_frame>   P  I  I  T  I  P  Q  N  *  Y  C  K  I  K  *  V  I  N  K  V  I  *  K  I  K  N  *  I  F  T  L  E  S  R  L  L  K  Y  S  *  I  *  F  I  H  S  F  R  S  Q  I  L  V  I  *  *  I  E  L  V  S  K  Y  L  T  I  *  V  F  M  N  I  I  T  M  F  L  Q  L  L  S  R  F  S  I  S  N  I  S  R  L  T  N  *  T  R  F  K  I  F  D  Y  V  S  I  L  R  E  Y  N  S  E  P  S  *  Y  S  F  I  Y  C  H  S  L  P  S  Q  M  *  V  V  *  K  I  K  T  Y  S  K  I  I  F  D  F  I  D  K  Q  K  *  F  N  L  H  A  F  F  *  I  N  S  S  I  I  L  *  L  V  K  Y  *  L  M  K  W  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0034P21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24559" PGL_stop="25958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24559" e_stop="24719"/>
            <exon e_start="24802" e_stop="25045"/>
            <exon e_start="25146" e_stop="25849"/>
            <exon e_start="25946" e_stop="25958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24559" e_stop="24719" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="24720" i_stop="24801" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24802" e_stop="25045" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25046" i_stop="25145" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="25146" e_stop="25849" e_length="704"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="25850" i_stop="25945" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25946" e_stop="25958" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24559" stop="24719"/>
              <exon start="24802" stop="25045"/>
              <exon start="25146" stop="25849"/>
              <exon start="25946" stop="25958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACACTGGAATGTTCTATGCCTGCATTATGCTTCCTGGTTTCTTCCTCTTCTTGATCGATCGATACTTGAGATTCTTGCAATCCAAGCAACAAGTTCGTTTGATTTCAGCCCGAGTTTTGACTTGTGAAACTGTTGAACTCAACTTCTCCAAAATATCAG : GTTTGGAGTACTCTCCTACGAGCATTATGTTCCTAAACGTGCCAAGCATATCCAAATTGCAGTGGCATCCATTCACTGTAACTTCAAACAGTAACCTAGAATCAGATACAATTAGTGTTGTCATCAAATGTGAAGGAAGCTGGACTAAGAAGCTTTACAGTGTCATGTCATTGCCTAAACCAGTCGATCGTCTTGATGTTTCTGTTGAAGGACCCTATGGACCTGCTTCCACTCATTTCCTAAG : GCATGATACATTGGTGTTGATCAGTGGAGGGAGTGGAATAACTCCATTCATTTCCATCGTCAGAGAGCTGATTCATATGAGCTCAACACTGAAATGCAAAACTCCAAAGATCTTATTAGTTAGTGTGTTCAGGAATACTTCACAACTCTCTATGTTAGACCTTCTTTATCCTATAGCAGGCACTCCTTCAGGATGTTCTTCTAATCTTGACCTACAAGTTGAGGCTTATATAACCAGAGAGATTGAACCAGCACAAGAAAAATCCGAACCCCTACGGACCATTTTGTTCAAACCTGACCACTCTGATGCACCCATAACCCCCATTTTAGGCCAGAACAATTGGCTCTGGCTTGCAGCTATAATATCGTCTTCATTTGCTTTGTACCTTCTATTTGTGGGACTTCTTTACCAATACTATGTTTACCCTATGGACCATGGTACTAACCAGGTATTCCCATACCACACAAGGGCTTTATTCAACATGTTGTTTATAGCAGCTGCTATAGTAATTACAGCAAGTGCAGCCTTCCTATGGAACAAGAAGAAAAGTGCTAGGGAAACTAAGCAGATTCAGGACATGGCAGATTCAGCAAAATCTTTGAACTCATTAATAGCTTATGCTGATCAAGAGCTAGAAAGTCTTCCTCAACAGTCGCTCGACAAATCTATCAAGACACATTATGGCCACAGACCTGATCTCAAGC : GAATATTGCTAGA</gDNA_template>
            <first_frame> P  H  W  N  V  L  C  L  H  Y  A  S  W  F  L  P  L  L  D  R  S  I  L  E  I  L  A  I  Q  A  T  S  S  F  D  F  S  P  S  F  D  L  *  N  C  *  T  Q  L  L  Q  N  I  R :   F  G  V  L  S  Y  E  H  Y  V  P  K  R  A  K  H  I  Q  I  A  V  A  S  I  H  C  N  F  K  Q  *  P  R  I  R  Y  N  *  C  C  H  Q  M  *  R  K  L  D  *  E  A  L  Q  C  H  V  I  A  *  T  S  R  S  S  *  C  F  C  *  R  T  L  W  T  C  F  H  S  F  P  K  :  A  *  Y  I  G  V  D  Q  W  R  E  W  N  N  S  I  H  F  H  R  Q  R  A  D  S  Y  E  L  N  T  E  M  Q  N  S  K  D  L  I  S  *  C  V  Q  E  Y  F  T  T  L  Y  V  R  P  S  L  S  Y  S  R  H  S  F  R  M  F  F  *  S  *  P  T  S  *  G  L  Y  N  Q  R  D  *  T  S  T  R  K  I  R  T  P  T  D  H  F  V  Q  T  *  P  L  *  C  T  H  N  P  H  F  R  P  E  Q  L  A  L  A  C  S  Y  N  I  V  F  I  C  F  V  P  S  I  C  G  T  S  L  P  I  L  C  L  P  Y  G  P  W  Y  *  P  G  I  P  I  P  H  K  G  F  I  Q  H  V  V  Y  S  S  C  Y  S  N  Y  S  K  C  S  L  P  M  E  Q  E  E  K  C  *  G  N  *  A  D  S  G  H  G  R  F  S  K  I  F  E  L  I  N  S  L  C  *  S  R  A  R  K  S  S  S  T  V  A  R  Q  I  Y  Q  D  T  L  W  P  Q  T  *  S  Q  A :   N  I  A  R </first_frame>
            <second_frame>  H  T  G  M  F  Y  A  C  I  M  L  P  G  F  F  L  F  L  I  D  R  Y  L  R  F  L  Q  S  K  Q  Q  V  R  L  I  S  A  R  V  L  T  C  E  T  V  E  L  N  F  S  K  I  S   : G  L  E  Y  S  P  T  S  I  M  F  L  N  V  P  S  I  S  K  L  Q  W  H  P  F  T  V  T  S  N  S  N  L  E  S  D  T  I  S  V  V  I  K  C  E  G  S  W  T  K  K  L  Y  S  V  M  S  L  P  K  P  V  D  R  L  D  V  S  V  E  G  P  Y  G  P  A  S  T  H  F  L  R :   H  D  T  L  V  L  I  S  G  G  S  G  I  T  P  F  I  S  I  V  R  E  L  I  H  M  S  S  T  L  K  C  K  T  P  K  I  L  L  V  S  V  F  R  N  T  S  Q  L  S  M  L  D  L  L  Y  P  I  A  G  T  P  S  G  C  S  S  N  L  D  L  Q  V  E  A  Y  I  T  R  E  I  E  P  A  Q  E  K  S  E  P  L  R  T  I  L  F  K  P  D  H  S  D  A  P  I  T  P  I  L  G  Q  N  N  W  L  W  L  A  A  I  I  S  S  S  F  A  L  Y  L  L  F  V  G  L  L  Y  Q  Y  Y  V  Y  P  M  D  H  G  T  N  Q  V  F  P  Y  H  T  R  A  L  F  N  M  L  F  I  A  A  A  I  V  I  T  A  S  A  A  F  L  W  N  K  K  K  S  A  R  E  T  K  Q  I  Q  D  M  A  D  S  A  K  S  L  N  S  L  I  A  Y  A  D  Q  E  L  E  S  L  P  Q  Q  S  L  D  K  S  I  K  T  H  Y  G  H  R  P  D  L  K   : R  I  L  L   </second_frame>
            <third_frame>   T  L  E  C  S  M  P  A  L  C  F  L  V  S  S  S  S  *  S  I  D  T  *  D  S  C  N  P  S  N  K  F  V  *  F  Q  P  E  F  *  L  V  K  L  L  N  S  T  S  P  K  Y  Q  :  V  W  S  T  L  L  R  A  L  C  S  *  T  C  Q  A  Y  P  N  C  S  G  I  H  S  L  *  L  Q  T  V  T  *  N  Q  I  Q  L  V  L  S  S  N  V  K  E  A  G  L  R  S  F  T  V  S  C  H  C  L  N  Q  S  I  V  L  M  F  L  L  K  D  P  M  D  L  L  P  L  I  S  *   : G  M  I  H  W  C  *  S  V  E  G  V  E  *  L  H  S  F  P  S  S  E  S  *  F  I  *  A  Q  H  *  N  A  K  L  Q  R  S  Y  *  L  V  C  S  G  I  L  H  N  S  L  C  *  T  F  F  I  L  *  Q  A  L  L  Q  D  V  L  L  I  L  T  Y  K  L  R  L  I  *  P  E  R  L  N  Q  H  K  K  N  P  N  P  Y  G  P  F  C  S  N  L  T  T  L  M  H  P  *  P  P  F  *  A  R  T  I  G  S  G  L  Q  L  *  Y  R  L  H  L  L  C  T  F  Y  L  W  D  F  F  T  N  T  M  F  T  L  W  T  M  V  L  T  R  Y  S  H  T  T  Q  G  L  Y  S  T  C  C  L  *  Q  L  L  *  *  L  Q  Q  V  Q  P  S  Y  G  T  R  R  K  V  L  G  K  L  S  R  F  R  T  W  Q  I  Q  Q  N  L  *  T  H  *  *  L  M  L  I  K  S  *  K  V  F  L  N  S  R  S  T  N  L  S  R  H  I  M  A  T  D  L  I  S  S  :  E  Y  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24560" stop="24719"/>
                    <exon start="24802" stop="25045"/>
                    <exon start="25146" stop="25849"/>
                    <exon start="25946" stop="25956"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTGMFYACIMLPGFFLFLIDRYLRFLQSKQQVRLISARVLTCETVELNFSKISGLEYSPTSIMFLNVPSISKLQWHPFTVTSNSNLESDTISVVIKCEGSWTKKLYSVMSLPKPVDRLDVSVEGPYGPASTHFLRHDTLVLISGGSGITPFISIVRELIHMSSTLKCKTPKILLVSVFRNTSQLSMLDLLYPIAGTPSGCSSNLDLQVEAYITREIEPAQEKSEPLRTILFKPDHSDAPITPILGQNNWLWLAAIISSSFALYLLFVGLLYQYYVYPMDHGTNQVFPYHTRALFNMLFIAAAIVITASAAFLWNKKKSARETKQIQDMADSAKSLNSLIAYADQELESLPQQSLDKSIKTHYGHRPDLKRILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26348" PGL_stop="26171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26348" e_stop="26171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="26348" e_stop="26171" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26348" stop="26171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAGTTTCAGACCTTGTTTAGTCTAATTTCTCAGACAAATACAGCTTCTATTCAAATCCCATGAACCTTATTTCCTCTTCCAAAGGCTACTTACAATACCTTACATATTATATTCAACAAAAAGTAATGTTATCTTGGGCAACCATACCCAGAATACCTATTTTAAACACACATAT</gDNA_template>
            <first_frame> R  K  F  Q  T  L  F  S  L  I  S  Q  T  N  T  A  S  I  Q  I  P  *  T  L  F  P  L  P  K  A  T  Y  N  T  L  H  I  I  F  N  K  K  *  C  Y  L  G  Q  P  Y  P  E  Y  L  F  *  T  H  I  </first_frame>
            <second_frame>  G  S  F  R  P  C  L  V  *  F  L  R  Q  I  Q  L  L  F  K  S  H  E  P  Y  F  L  F  Q  R  L  L  T  I  P  Y  I  L  Y  S  T  K  S  N  V  I  L  G  N  H  T  Q  N  T  Y  F  K  H  T  Y </second_frame>
            <third_frame>   E  V  S  D  L  V  *  S  N  F  S  D  K  Y  S  F  Y  S  N  P  M  N  L  I  S  S  S  K  G  Y  L  Q  Y  L  T  Y  Y  I  Q  Q  K  V  M  L  S  W  A  T  I  P  R  I  P  I  L  N  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0034P21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28434" PGL_stop="26776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28434" e_stop="28321"/>
            <exon e_start="28244" e_stop="28167"/>
            <exon e_start="27715" e_stop="27599"/>
            <exon e_start="27414" e_stop="27352"/>
            <exon e_start="27273" e_stop="26776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="0.987"/>
          <exon-intron don_prob="0.828" acc_prob="0.583" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28434" e_stop="28321" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="28244" e_stop="28167" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27715" e_stop="27599" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.583">
            <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27414" e_stop="27352" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27351" i_stop="27274" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="27273" e_stop="26776" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28434" stop="28321"/>
              <exon start="28244" stop="28167"/>
              <exon start="27715" stop="27599"/>
              <exon start="27414" stop="27352"/>
              <exon start="27273" stop="26776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACATGTTGCTTCTGTTAAGAATATTTTAGAAAGTCATGCAAGCTATTTGATGTCTGGAAAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTG : GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG : CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG : GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAG : ACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGGAAGGGGGTTGAGCGGCTCTGCAGATGAGATTTTTGGTTCCTGTTCTACTTTACCCAACTGTGTCCTGCAGAAATTTATTTTGTAGATAGGTGTATCATTGCTATTAGTTCTCTTTGGTTTCCATGGTCCTGTTTCTTTTTCATGATTTATAGTTTGTATCAACTTCTAGCTTTTTCAACAAGGGTGTGGGGTGATCATAATGAAAAGGGACACCTCTTGTATGAAAGATCTGATCTTCCGATGAATAGAGAATAGAGAAGATTTTGTGCATTACTGC</gDNA_template>
            <first_frame> A  H  V  A  S  V  K  N  I  L  E  S  H  A  S  Y  L  M  S  G  K  E  L  S  K  L  V  A  F  V  K  G  T  Q  F  D  L  V  :  E  Y  L  Q  R  E  R  Y  G  S  A  R  L  D  N  F  A  S  G  F  E  L  I  G  Q  K  :  L  Q  M  E  T  L  Q  S  R  L  D  A  E  F  L  L  S  H  M  C  S  V  K  F  K  E  W  I  V  V  L  A  T  L  L  R  R  S  E  :  V  L  F  D  L  F  Q  H  D  L  R  L  W  K  A  Y  S  I  T  L  K  :  T  H  P  S  F  V  Q  Y  D  D  L  L  E  S  L  D  E  K  L  S  S  T  S  N  L  E  E  K  *  A  L  W  M  *  R  A  P  L  V  S  F  A  R  K  W  L  K  E  L  P  V  R  S  S  T  S  S  F  N  P  T  N  L  K  S  A  *  M  S  T  A  L  L  G  R  G  L  S  G  S  A  D  E  I  F  G  S  C  S  T  L  P  N  C  V  L  Q  K  F  I  L  *  I  G  V  S  L  L  L  V  L  F  G  F  H  G  P  V  S  F  S  *  F  I  V  C  I  N  F  *  L  F  Q  Q  G  C  G  V  I  I  M  K  R  D  T  S  C  M  K  D  L  I  F  R  *  I  E  N  R  E  D  F  V  H  Y  C </first_frame>
            <second_frame>  H  M  L  L  L  L  R  I  F  *  K  V  M  Q  A  I  *  C  L  E  K  N  C  Q  S  S  L  H  L  *  R  A  R  S  L  I  L  W :   N  I  C  S  E  K  D  M  E  V  L  V  W  T  T  L  L  Q  A  L  N  *  L  G  K  S :   F  R  W  K  H  C  K  V  V  *  M  Q  S  S  F  C  L  I  C  A  L  *  S  S  K  S  G  L  *  Y  W  P  H  F  *  G  G  L  R :   S  C  L  I  Y  F  S  M  I  Y  A  C  G  K  H  I  A  L  L  *  R :   P  I  H  L  L  S  N  T  M  T  C  L  K  V  W  M  K  N  F  H  P  L  Q  I  *  K  K  N  E  L  S  G  C  K  E  H  R  W  S  A  L  L  E  N  G  *  K  S  F  Q  *  D  L  L  L  Q  A  L  T  P  P  T  *  N  Q  H  K  C  L  L  L  Y  W  E  G  G  *  A  A  L  Q  M  R  F  L  V  P  V  L  L  Y  P  T  V  S  C  R  N  L  F  C  R  *  V  Y  H  C  Y  *  F  S  L  V  S  M  V  L  F  L  F  H  D  L  *  F  V  S  T  S  S  F  F  N  K  G  V  G  *  S  *  *  K  G  T  P  L  V  *  K  I  *  S  S  D  E  *  R  I  E  K  I  L  C  I  T   </second_frame>
            <third_frame>   T  C  C  F  C  *  E  Y  F  R  K  S  C  K  L  F  D  V  W  K  R  T  V  K  A  R  C  I  C  K  G  H  A  V  *  S  C   : G  I  F  A  A  R  K  I  W  K  C  S  S  G  Q  L  C  F  R  L  *  T  D  W  A  K   : A  S  D  G  N  I  A  K  S  F  R  C  R  V  P  F  V  S  Y  V  L  C  E  V  Q  R  V  D  C  S  I  G  H  T  F  E  A  V  *   : G  L  V  *  F  I  S  A  *  F  T  L  V  E  S  I  *  H  Y  F  K   : D  P  S  I  F  C  P  I  R  *  L  A  *  K  F  G  *  K  T  F  I  H  F  K  F  R  R  K  M  S  S  L  D  V  K  S  T  V  G  Q  L  C  *  K  M  V  K  R  A  S  S  E  I  F  Y  F  K  L  *  P  H  Q  L  E  I  S  I  N  V  Y  C  S  I  G  K  G  V  E  R  L  C  R  *  D  F  W  F  L  F  Y  F  T  Q  L  C  P  A  E  I  Y  F  V  D  R  C  I  I  A  I  S  S  L  W  F  P  W  S  C  F  F  F  M  I  Y  S  L  Y  Q  L  L  A  F  S  T  R  V  W  G  D  H  N  E  K  G  H  L  L  Y  E  R  S  D  L  P  M  N  R  E  *  R  R  F  C  A  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28434" stop="28321"/>
                    <exon start="28244" stop="28167"/>
                    <exon start="27715" stop="27599"/>
                    <exon start="27414" stop="27352"/>
                    <exon start="27273" stop="27187"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGSARLDNFASGFELIGQKLQMETLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFDLFQHDLRLWKAYSITLKTHPSFVQYDDLLESLDEKLSSTSNLEEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27025" stop="26798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWFLFYFTQLCPAEIYFVDRCIIAISSLWFPWSCFFFMIYSLYQLLAFSTRVWGDHNEKGHLLYERSDLPMNRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28374" e_stop="28321"/>
            <exon e_start="28244" e_stop="28167"/>
            <exon e_start="27715" e_stop="27599"/>
            <exon e_start="27414" e_stop="27053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="0.944"/>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.583" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="28374" e_stop="28321" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28320" i_stop="28245" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28244" e_stop="28167" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="28166" i_stop="27716" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27715" e_stop="27599" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.583">
            <gDNA_intron_boundary i_start="27598" i_stop="27415" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27414" e_stop="27053" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28374" stop="28321"/>
              <exon start="28244" stop="28167"/>
              <exon start="27715" stop="27599"/>
              <exon start="27414" stop="27053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAACTGTCAAAGCTCGTTGCATTTGTAAAGGGCACGCAGTTTGATCTTGTG : GAATATTTGCAGCGAGAAAGATATGGAAGTGCTCGTCTGGACAACTTTGCTTCAGGCTTTGAACTGATTGGGCAAAAG : CTTCAGATGGAAACATTGCAAAGTCGTTTAGATGCAGAGTTCCTTTTGTCTCATATGTGCTCTGTGAAGTTCAAAGAGTGGATTGTAGTATTGGCCACACTTTTGAGGCGGTCTGAG : GTCTTGTTTGATTTATTTCAGCATGATTTACGCTTGTGGAAAGCATATAGCATTACTTTAAAGGTAAATTTGATACATTATTTCTTTGGTTACATTGACTTTATTTGTGCATCTTACTGTGGTTTTCCTGTTCATCTTCAGACCCATCCATCTTTTGTCCAATACGATGACTTGCTTGAAAGTTTGGATGAAAAACTTTCATCCACTTCAAATTTAGAAGAAAAATGAGCTCTCTGGATGTAAAGAGCACCGTTGGTCAGCTTTGCTAGAAAATGGTTAAAAGAGCTTCCAGTGAGATCTTCTACTTCAAGCTTTAACCCCACCAACTTGAAATCAGCATAAATGTCTACTGCTCTATTGGG</gDNA_template>
            <first_frame> K  E  L  S  K  L  V  A  F  V  K  G  T  Q  F  D  L  V  :  E  Y  L  Q  R  E  R  Y  G  S  A  R  L  D  N  F  A  S  G  F  E  L  I  G  Q  K  :  L  Q  M  E  T  L  Q  S  R  L  D  A  E  F  L  L  S  H  M  C  S  V  K  F  K  E  W  I  V  V  L  A  T  L  L  R  R  S  E  :  V  L  F  D  L  F  Q  H  D  L  R  L  W  K  A  Y  S  I  T  L  K  V  N  L  I  H  Y  F  F  G  Y  I  D  F  I  C  A  S  Y  C  G  F  P  V  H  L  Q  T  H  P  S  F  V  Q  Y  D  D  L  L  E  S  L  D  E  K  L  S  S  T  S  N  L  E  E  K  *  A  L  W  M  *  R  A  P  L  V  S  F  A  R  K  W  L  K  E  L  P  V  R  S  S  T  S  S  F  N  P  T  N  L  K  S  A  *  M  S  T  A  L  L   </first_frame>
            <second_frame>  K  N  C  Q  S  S  L  H  L  *  R  A  R  S  L  I  L  W :   N  I  C  S  E  K  D  M  E  V  L  V  W  T  T  L  L  Q  A  L  N  *  L  G  K  S :   F  R  W  K  H  C  K  V  V  *  M  Q  S  S  F  C  L  I  C  A  L  *  S  S  K  S  G  L  *  Y  W  P  H  F  *  G  G  L  R :   S  C  L  I  Y  F  S  M  I  Y  A  C  G  K  H  I  A  L  L  *  R  *  I  *  Y  I  I  S  L  V  T  L  T  L  F  V  H  L  T  V  V  F  L  F  I  F  R  P  I  H  L  L  S  N  T  M  T  C  L  K  V  W  M  K  N  F  H  P  L  Q  I  *  K  K  N  E  L  S  G  C  K  E  H  R  W  S  A  L  L  E  N  G  *  K  S  F  Q  *  D  L  L  L  Q  A  L  T  P  P  T  *  N  Q  H  K  C  L  L  L  Y  W  </second_frame>
            <third_frame>   R  T  V  K  A  R  C  I  C  K  G  H  A  V  *  S  C   : G  I  F  A  A  R  K  I  W  K  C  S  S  G  Q  L  C  F  R  L  *  T  D  W  A  K   : A  S  D  G  N  I  A  K  S  F  R  C  R  V  P  F  V  S  Y  V  L  C  E  V  Q  R  V  D  C  S  I  G  H  T  F  E  A  V  *   : G  L  V  *  F  I  S  A  *  F  T  L  V  E  S  I  *  H  Y  F  K  G  K  F  D  T  L  F  L  W  L  H  *  L  Y  L  C  I  L  L  W  F  S  C  S  S  S  D  P  S  I  F  C  P  I  R  *  L  A  *  K  F  G  *  K  T  F  I  H  F  K  F  R  R  K  M  S  S  L  D  V  K  S  T  V  G  Q  L  C  *  K  M  V  K  R  A  S  S  E  I  F  Y  F  K  L  *  P  H  Q  L  E  I  S  I  N  V  Y  C  S  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28374" stop="28321"/>
                    <exon start="28244" stop="28167"/>
                    <exon start="27715" stop="27599"/>
                    <exon start="27414" stop="27187"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELSKLVAFVKGTQFDLVEYLQRERYGSARLDNFASGFELIGQKLQMETLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFDLFQHDLRLWKAYSITLKVNLIHYFFGYIDFICASYCGFPVHLQTHPSFVQYDDLLESLDEKLSSTSNLEEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="34167" PGL_stop="30681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34167" e_stop="34040"/>
            <exon e_start="33903" e_stop="33729"/>
            <exon e_start="33632" e_stop="33579"/>
            <exon e_start="32801" e_stop="32622"/>
            <exon e_start="30736" e_stop="30681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.903" e_score="0.969"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="34167" e_stop="34040" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.903">
            <gDNA_intron_boundary i_start="34039" i_stop="33904" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33903" e_stop="33729" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="33728" i_stop="33633" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33632" e_stop="33579" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33578" i_stop="32802" i_length="777"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32801" e_stop="32622" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.867" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32621" i_stop="30737" i_length="1885"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="30736" e_stop="30681" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34167" stop="34040"/>
              <exon start="33903" stop="33729"/>
              <exon start="33632" stop="33579"/>
              <exon start="32801" stop="32622"/>
              <exon start="30736" stop="30681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATCATGACTGCAAAGAGCCATCCTGCATCAATGCGTTTTATTCCTGATCAGCTCCCAAGAGAAGGCATTGCAGGAAATGGTGGTCTGCCAACTTCTTTGGATCTGTCAGTCCGAGAGCCTACCCG : ATGCTTAATACTAAGGACAAATGGAGAGCTTTCACTTCTTGATTTGGATGAGGGGAGAGAAAGAGAACTTACGGACTCCGTAGAGTTGTTTTGGGTTACCTGTGGTCAGTCAGAGGAGAAAGCAAGCTTGATTGAGGAAGTTTCATGGTTAGACTATGGCCACCGTGGAATGCAG : GTTTGGTATCCATCTCCTGGTGCTGATGTTTTTAAGCAAGAGGATTTTTTGCAG : TTGGATCCGGAGCTGGATTTTGATCGTGAGGTTTATCCTCTTGGTTTGCTTCCAAATGCTGGAGTTGTAGTTGGCGTCTCCCAGAGAATGTCATTTTCCGCATGTACAGAGTTTCCATGTTTCGAGCCATCACCTCAAGCTCAGACTATTTTGCATTGCCTACTTCGACATCTTCTACAG : AGGGATAAAAAGGAAGAAGCTCTAAGATTGGCACAATTATCAGCTGAGAAGCCACA</gDNA_template>
            <first_frame> S  I  M  T  A  K  S  H  P  A  S  M  R  F  I  P  D  Q  L  P  R  E  G  I  A  G  N  G  G  L  P  T  S  L  D  L  S  V  R  E  P  T  R :   C  L  I  L  R  T  N  G  E  L  S  L  L  D  L  D  E  G  R  E  R  E  L  T  D  S  V  E  L  F  W  V  T  C  G  Q  S  E  E  K  A  S  L  I  E  E  V  S  W  L  D  Y  G  H  R  G  M  Q  :  V  W  Y  P  S  P  G  A  D  V  F  K  Q  E  D  F  L  Q  :  L  D  P  E  L  D  F  D  R  E  V  Y  P  L  G  L  L  P  N  A  G  V  V  V  G  V  S  Q  R  M  S  F  S  A  C  T  E  F  P  C  F  E  P  S  P  Q  A  Q  T  I  L  H  C  L  L  R  H  L  L  Q  :  R  D  K  K  E  E  A  L  R  L  A  Q  L  S  A  E  K  P   </first_frame>
            <second_frame>  Q  S  *  L  Q  R  A  I  L  H  Q  C  V  L  F  L  I  S  S  Q  E  K  A  L  Q  E  M  V  V  C  Q  L  L  W  I  C  Q  S  E  S  L  P   : D  A  *  Y  *  G  Q  M  E  S  F  H  F  L  I  W  M  R  G  E  K  E  N  L  R  T  P  *  S  C  F  G  L  P  V  V  S  Q  R  R  K  Q  A  *  L  R  K  F  H  G  *  T  M  A  T  V  E  C  R :   F  G  I  H  L  L  V  L  M  F  L  S  K  R  I  F  C  S :   W  I  R  S  W  I  L  I  V  R  F  I  L  L  V  C  F  Q  M  L  E  L  *  L  A  S  P  R  E  C  H  F  P  H  V  Q  S  F  H  V  S  S  H  H  L  K  L  R  L  F  C  I  A  Y  F  D  I  F  Y  R :   G  I  K  R  K  K  L  *  D  W  H  N  Y  Q  L  R  S  H  </second_frame>
            <third_frame>   N  H  D  C  K  E  P  S  C  I  N  A  F  Y  S  *  S  A  P  K  R  R  H  C  R  K  W  W  S  A  N  F  F  G  S  V  S  P  R  A  Y  P  :  M  L  N  T  K  D  K  W  R  A  F  T  S  *  F  G  *  G  E  R  K  R  T  Y  G  L  R  R  V  V  L  G  Y  L  W  S  V  R  G  E  S  K  L  D  *  G  S  F  M  V  R  L  W  P  P  W  N  A   : G  L  V  S  I  S  W  C  *  C  F  *  A  R  G  F  F  A   : V  G  S  G  A  G  F  *  S  *  G  L  S  S  W  F  A  S  K  C  W  S  C  S  W  R  L  P  E  N  V  I  F  R  M  Y  R  V  S  M  F  R  A  I  T  S  S  S  D  Y  F  A  L  P  T  S  T  S  S  T   : E  G  *  K  G  R  S  S  K  I  G  T  I  I  S  *  E  A  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34167" stop="34040"/>
                    <exon start="33903" stop="33729"/>
                    <exon start="33632" stop="33579"/>
                    <exon start="32801" stop="32622"/>
                    <exon start="30736" stop="30683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIMTAKSHPASMRFIPDQLPREGIAGNGGLPTSLDLSVREPTRCLILRTNGELSLLDLDEGRERELTDSVELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPSPGADVFKQEDFLQLDPELDFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKKEEALRLAQLSAEKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="43635" PGL_stop="44168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43635" e_stop="44168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="43635" e_stop="44168" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43635" stop="44168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTAATATTGAATGATCACTCCGCATAGAATAAGTCATCCTCTTACACAAGTCAATTATTATCTGAATTACCATAATCTACAAGCTAAGAAATGAAGAATAATCTAAAAGTATTGTACTAAATTCAAGTAGAGATCAATGGATTTTCCTGCCAAAAAAAAGAAAGTTTCAACTCATTGAACATGATTAGATTTGGGTTCTCCAGCACCAGGAGGGGGATAATTGGCTGGTGGGTAACCCTGAGGTGGCTGCTGTGGTGATGGGTAACCCTGAGGCTGCTGCTGTGGTGGTGGGTAACCCTGAGGCTGCTGCTGTGGTGGTGGGTAACCCTGAGGCGTCTGCTGTGGTGGTGGATAACCTTGAGGCTGCTGTTGTGGTGGATAACCCTGAGGCTGCTGCTGAGGTGGTGGATAATCCTGAGGTTGTTGCTGAGGTGGTTGGTACTCCTGAGGGTTTTGCTGAGATGGAGGATAACCCTGAGGATGTTGTGGTGGTGGTGGATTACCATGGGGTTGTGGGGGATATCCTTGAGG</gDNA_template>
            <first_frame> I  L  I  L  N  D  H  S  A  *  N  K  S  S  S  Y  T  S  Q  L  L  S  E  L  P  *  S  T  S  *  E  M  K  N  N  L  K  V  L  Y  *  I  Q  V  E  I  N  G  F  S  C  Q  K  K  E  S  F  N  S  L  N  M  I  R  F  G  F  S  S  T  R  R  G  I  I  G  W  W  V  T  L  R  W  L  L  W  *  W  V  T  L  R  L  L  L  W  W  W  V  T  L  R  L  L  L  W  W  W  V  T  L  R  R  L  L  W  W  W  I  T  L  R  L  L  L  W  W  I  T  L  R  L  L  L  R  W  W  I  I  L  R  L  L  L  R  W  L  V  L  L  R  V  L  L  R  W  R  I  T  L  R  M  L  W  W  W  W  I  T  M  G  L  W  G  I  S  L  R </first_frame>
            <second_frame>  S  *  Y  *  M  I  T  P  H  R  I  S  H  P  L  T  Q  V  N  Y  Y  L  N  Y  H  N  L  Q  A  K  K  *  R  I  I  *  K  Y  C  T  K  F  K  *  R  S  M  D  F  P  A  K  K  K  K  V  S  T  H  *  T  *  L  D  L  G  S  P  A  P  G  G  G  *  L  A  G  G  *  P  *  G  G  C  C  G  D  G  *  P  *  G  C  C  C  G  G  G  *  P  *  G  C  C  C  G  G  G  *  P  *  G  V  C  C  G  G  G  *  P  *  G  C  C  C  G  G  *  P  *  G  C  C  *  G  G  G  *  S  *  G  C  C  *  G  G  W  Y  S  *  G  F  C  *  D  G  G  *  P  *  G  C  C  G  G  G  G  L  P  W  G  C  G  G  Y  P  *   </second_frame>
            <third_frame>   L  N  I  E  *  S  L  R  I  E  *  V  I  L  L  H  K  S  I  I  I  *  I  T  I  I  Y  K  L  R  N  E  E  *  S  K  S  I  V  L  N  S  S  R  D  Q  W  I  F  L  P  K  K  R  K  F  Q  L  I  E  H  D  *  I  W  V  L  Q  H  Q  E  G  D  N  W  L  V  G  N  P  E  V  A  A  V  V  M  G  N  P  E  A  A  A  V  V  V  G  N  P  E  A  A  A  V  V  V  G  N  P  E  A  S  A  V  V  V  D  N  L  E  A  A  V  V  V  D  N  P  E  A  A  A  E  V  V  D  N  P  E  V  V  A  E  V  V  G  T  P  E  G  F  A  E  M  E  D  N  P  E  D  V  V  V  V  V  D  Y  H  G  V  V  G  D  I  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43826" stop="44167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWVLQHQEGDNWLVGNPEVAAVVMGNPEAAAVVVGNPEAAAVVVGNPEASAVVVDNLEAAVVVDNPEAAAEVVDNPEVVAEVVGTPEGFAEMEDNPEDVVVVVDYHGVVGDILE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43896" stop="44168"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVTLRLLLWWWVTLRLLLWWWVTLRRLLWWWITLRLLLWWITLRLLLRWWIILRLLLRWLVLLRVLLRWRITLRMLWWWWITMGLWGISLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51794" PGL_stop="55862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51794" e_stop="51860"/>
            <exon e_start="53460" e_stop="53518"/>
            <exon e_start="53754" e_stop="53856"/>
            <exon e_start="53941" e_stop="54050"/>
            <exon e_start="54189" e_stop="54257"/>
            <exon e_start="55363" e_stop="55507"/>
            <exon e_start="55776" e_stop="55862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.517" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.618" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.483" e_score="0.990"/>
          <exon-intron don_prob="0.964" acc_prob="0.058" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="0.990" e_score="0.979"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51794" e_stop="51860" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.517" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51861" i_stop="53459" i_length="1599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53460" e_stop="53518" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.618" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53519" i_stop="53753" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="53754" e_stop="53856" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.483">
            <gDNA_intron_boundary i_start="53857" i_stop="53940" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53941" e_stop="54050" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.058">
            <gDNA_intron_boundary i_start="54051" i_stop="54188" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54189" e_stop="54257" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54258" i_stop="55362" i_length="1105"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="55363" e_stop="55507" e_length="145"/>
          </exon>
          <intron i_serial="6" don_prob="0.786" acc_prob="0.990">
            <gDNA_intron_boundary i_start="55508" i_stop="55775" i_length="268"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55776" e_stop="55862" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51794" stop="51860"/>
              <exon start="53460" stop="53518"/>
              <exon start="53754" stop="53856"/>
              <exon start="53941" stop="54050"/>
              <exon start="54189" stop="54257"/>
              <exon start="55363" stop="55507"/>
              <exon start="55776" stop="55862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTACTCTTTCTAGCTTCATATATGCAACTACTGTGCTCAAACCTTATGAATGGAGATACATTAGTG : TGGACTTACCACCATGGTTCTCTTCGGTGACTATTGCTTTGGAATCCAATATTGGCGTT : GACCTGAATAGAATAGGAAAAGCAAGTACTTTGCCGATGATCTGCTTCCGAGAAGGAAGTCCGCCCCTTCCAGATGTTCATAACACTTCTATTACAGGTCTAG : TGATAGACCACATTTCCAATAGTTCCTTTGGAGGATCACAAGATCTTCAAATGGTTGAGAAGTGCTACCCCATGCAGAAAAGTATATCCTTGATGTTGACAAATGAGCAG : ATTCGTCCAGGAATATGGTATTTTGGGTTATTTAATGGCATCGGACCTTTAAGGACACAATCAAAAATG : ATTAATCGAGGACATTCATACTCATTCAGTGGTAATATAACTGTGGAAGGCTGTACAAATTCAGCTATGCTGGGGAAATTCTGCAACCAAACAATTAGTTTACTCTCATGTTCGGATACCTATTTATCTCCTCAAAGTGAAATAG : CCAATATGACTACCTGTGGAGGTACCGAGAACAGCTGTCTTGACGTCGCTGGGTCAAAAGTCTACTCATTGGATGTAGTGAGTATTG</gDNA_template>
            <first_frame> A  T  L  S  S  F  I  Y  A  T  T  V  L  K  P  Y  E  W  R  Y  I  S   : V  D  L  P  P  W  F  S  S  V  T  I  A  L  E  S  N  I  G  V  :  D  L  N  R  I  G  K  A  S  T  L  P  M  I  C  F  R  E  G  S  P  P  L  P  D  V  H  N  T  S  I  T  G  L   : V  I  D  H  I  S  N  S  S  F  G  G  S  Q  D  L  Q  M  V  E  K  C  Y  P  M  Q  K  S  I  S  L  M  L  T  N  E  Q  :  I  R  P  G  I  W  Y  F  G  L  F  N  G  I  G  P  L  R  T  Q  S  K  M  :  I  N  R  G  H  S  Y  S  F  S  G  N  I  T  V  E  G  C  T  N  S  A  M  L  G  K  F  C  N  Q  T  I  S  L  L  S  C  S  D  T  Y  L  S  P  Q  S  E  I   : A  N  M  T  T  C  G  G  T  E  N  S  C  L  D  V  A  G  S  K  V  Y  S  L  D  V  V  S  I  </first_frame>
            <second_frame>  L  L  F  L  A  S  Y  M  Q  L  L  C  S  N  L  M  N  G  D  T  L  V  :  W  T  Y  H  H  G  S  L  R  *  L  L  L  W  N  P  I  L  A  L :   T  *  I  E  *  E  K  Q  V  L  C  R  *  S  A  S  E  K  E  V  R  P  F  Q  M  F  I  T  L  L  L  Q  V  *  :  *  *  T  T  F  P  I  V  P  L  E  D  H  K  I  F  K  W  L  R  S  A  T  P  C  R  K  V  Y  P  *  C  *  Q  M  S  R :   F  V  Q  E  Y  G  I  L  G  Y  L  M  A  S  D  L  *  G  H  N  Q  K  * :   L  I  E  D  I  H  T  H  S  V  V  I  *  L  W  K  A  V  Q  I  Q  L  C  W  G  N  S  A  T  K  Q  L  V  Y  S  H  V  R  I  P  I  Y  L  L  K  V  K  *  :  P  I  *  L  P  V  E  V  P  R  T  A  V  L  T  S  L  G  Q  K  S  T  H  W  M  *  *  V  L </second_frame>
            <third_frame>   Y  S  F  *  L  H  I  C  N  Y  C  A  Q  T  L  *  M  E  I  H  *  C :   G  L  T  T  M  V  L  F  G  D  Y  C  F  G  I  Q  Y  W  R   : *  P  E  *  N  R  K  S  K  Y  F  A  D  D  L  L  P  R  R  K  S  A  P  S  R  C  S  *  H  F  Y  Y  R  S  S :   D  R  P  H  F  Q  *  F  L  W  R  I  T  R  S  S  N  G  *  E  V  L  P  H  A  E  K  Y  I  L  D  V  D  K  *  A   : D  S  S  R  N  M  V  F  W  V  I  *  W  H  R  T  F  K  D  T  I  K  N   : D  *  S  R  T  F  I  L  I  Q  W  *  Y  N  C  G  R  L  Y  K  F  S  Y  A  G  E  I  L  Q  P  N  N  *  F  T  L  M  F  G  Y  L  F  I  S  S  K  *  N  S :   Q  Y  D  Y  L  W  R  Y  R  E  Q  L  S  *  R  R  W  V  K  S  L  L  I  G  C  S  E  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51794" stop="51860"/>
                    <exon start="53460" stop="53518"/>
                    <exon start="53754" stop="53856"/>
                    <exon start="53941" stop="54050"/>
                    <exon start="54189" stop="54257"/>
                    <exon start="55363" stop="55507"/>
                    <exon start="55776" stop="55861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATLSSFIYATTVLKPYEWRYISVDLPPWFSSVTIALESNIGVDLNRIGKASTLPMICFREGSPPLPDVHNTSITGLVIDHISNSSFGGSQDLQMVEKCYPMQKSISLMLTNEQIRPGIWYFGLFNGIGPLRTQSKMINRGHSYSFSGNITVEGCTNSAMLGKFCNQTISLLSCSDTYLSPQSEIANMTTCGGTENSCLDVAGSKVYSLDVVSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56927" PGL_stop="58350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56927" e_stop="57148"/>
            <exon e_start="57232" e_stop="57296"/>
            <exon e_start="57826" e_stop="57905"/>
            <exon e_start="58107" e_stop="58211"/>
            <exon e_start="58300" e_stop="58350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.692" acc_prob="0.964" e_score="0.973"/>
          <exon-intron don_prob="0.993" acc_prob="0.195" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="56927" e_stop="57148" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.692" acc_prob="0.964">
            <gDNA_intron_boundary i_start="57149" i_stop="57231" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="57232" e_stop="57296" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.195">
            <gDNA_intron_boundary i_start="57297" i_stop="57825" i_length="529"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57826" e_stop="57905" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57906" i_stop="58106" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="58107" e_stop="58211" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58212" i_stop="58299" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="58300" e_stop="58350" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56927" stop="57148"/>
              <exon start="57232" stop="57296"/>
              <exon start="57826" stop="57905"/>
              <exon start="58107" stop="58211"/>
              <exon start="58300" stop="58350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTTAAGTTATATGATGCAAGTGATAAATCTGTTAGCTTTTATATCATATATGCTAGAGGAGGAACATGGAGTTTTGGGTTAAGGCACCCAATTTCAAACAGGCATAGTTCGACAGTTGAAACTACCATGTCTATCTCACTAGAGAGATGCCCAGCGAAATGCTCTTCGCACGGGGCATGCAAGTCTGTGTTGGATTCAAGTGGTCTCACATTCTACAG : TTTCTGTGATTGTGATCGACGCACTGGAGGCTTTGATTGCAGTGTTGAACTGGTTTCTTCTTCAG : GACAAATGTGGCAATCGATTTCCCTTATTGGATCCAATGCTGCAGCTTTGCTCCCTGCTTACTGGGCCCTCCGTCATAAG : GCATTTGCTGAATGGGTTCTTTACACATCAAGTGGTATCTCAAGTGGCCTGTATCATGCATGTGATCTTGGCACTTGGTGTCCATTATCCTATCATGTCTTACAG : TTCATGGATTTCTGGCTCTCTTTCATGGCTGTTGTTAGTACTTTTGTTTAC</gDNA_template>
            <first_frame> V  F  *  V  I  *  C  K  *  *  I  C  *  L  L  Y  H  I  C  *  R  R  N  M  E  F  W  V  K  A  P  N  F  K  Q  A  *  F  D  S  *  N  Y  H  V  Y  L  T  R  E  M  P  S  E  M  L  F  A  R  G  M  Q  V  C  V  G  F  K  W  S  H  I  L  Q  :  F  L  *  L  *  S  T  H  W  R  L  *  L  Q  C  *  T  G  F  F  F  R :   T  N  V  A  I  D  F  P  Y  W  I  Q  C  C  S  F  A  P  C  L  L  G  P  P  S  *   : G  I  C  *  M  G  S  L  H  I  K  W  Y  L  K  W  P  V  S  C  M  *  S  W  H  L  V  S  I  I  L  S  C  L  T   : V  H  G  F  L  A  L  F  H  G  C  C  *  Y  F  C  L  </first_frame>
            <second_frame>  F  F  K  L  Y  D  A  S  D  K  S  V  S  F  Y  I  I  Y  A  R  G  G  T  W  S  F  G  L  R  H  P  I  S  N  R  H  S  S  T  V  E  T  T  M  S  I  S  L  E  R  C  P  A  K  C  S  S  H  G  A  C  K  S  V  L  D  S  S  G  L  T  F  Y  S :   F  C  D  C  D  R  R  T  G  G  F  D  C  S  V  E  L  V  S  S  S   : G  Q  M  W  Q  S  I  S  L  I  G  S  N  A  A  A  L  L  P  A  Y  W  A  L  R  H  K  :  A  F  A  E  W  V  L  Y  T  S  S  G  I  S  S  G  L  Y  H  A  C  D  L  G  T  W  C  P  L  S  Y  H  V  L  Q  :  F  M  D  F  W  L  S  F  M  A  V  V  S  T  F  V  Y </second_frame>
            <third_frame>   F  L  S  Y  M  M  Q  V  I  N  L  L  A  F  I  S  Y  M  L  E  E  E  H  G  V  L  G  *  G  T  Q  F  Q  T  G  I  V  R  Q  L  K  L  P  C  L  S  H  *  R  D  A  Q  R  N  A  L  R  T  G  H  A  S  L  C  W  I  Q  V  V  S  H  S  T   : V  S  V  I  V  I  D  A  L  E  A  L  I  A  V  L  N  W  F  L  L  Q  :  D  K  C  G  N  R  F  P  L  L  D  P  M  L  Q  L  C  S  L  L  T  G  P  S  V  I  R :   H  L  L  N  G  F  F  T  H  Q  V  V  S  Q  V  A  C  I  M  H  V  I  L  A  L  G  V  H  Y  P  I  M  S  Y  S :   S  W  I  S  G  S  L  S  W  L  L  L  V  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56928" stop="57148"/>
                    <exon start="57232" stop="57296"/>
                    <exon start="57826" stop="57905"/>
                    <exon start="58107" stop="58211"/>
                    <exon start="58300" stop="58350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFKLYDASDKSVSFYIIYARGGTWSFGLRHPISNRHSSTVETTMSISLERCPAKCSSHGACKSVLDSSGLTFYSFCDCDRRTGGFDCSVELVSSSGQMWQSISLIGSNAAALLPAYWALRHKAFAEWVLYTSSGISSGLYHACDLGTWCPLSYHVLQFMDFWLSFMAVVSTFVY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="58568" PGL_stop="59470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58568" e_stop="58659"/>
            <exon e_start="58778" e_stop="58930"/>
            <exon e_start="59026" e_stop="59470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.954" e_score="0.967"/>
          <exon-intron don_prob="0.776" acc_prob="0.554" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="58568" e_stop="58659" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.954">
            <gDNA_intron_boundary i_start="58660" i_stop="58777" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58778" e_stop="58930" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.554">
            <gDNA_intron_boundary i_start="58931" i_stop="59025" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="59026" e_stop="59470" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58568" stop="58659"/>
              <exon start="58778" stop="58930"/>
              <exon start="59026" stop="59470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCTCTGTTCATTGGGTTCCTCATTGAATTCTTTAGTCATCATAGATGGATTTCCTTTTCAACAGAAATTTGTTTGAACATGCTCAACAG : ATGGGAAACTGTAAAAGCATGGGTTCATAATTTCATTCGGTCTCTTCTGAAGCGCTTTCGGTGGCGCTTTCTACTTGCGGGATTCACTGCATTAGCAATAGCTGCTATTAGCTGGAAACTTGAAACAAGTCAAAATTACTGGATATGGCACAG : TGCATGGCATGTTACGATATATACTTCTTCATTTCTTTTTCTCTGTTCAAAAGCAACAGCAGTTAACTGTGATAACGAACAACCTCGATCAGAGAACTATGAGTTGGCTCGGCAAAATTCTTTCAATGGTAGTAGCGAAAGAGGTGGTAGATAGTTCGTAATAGAATCTACTTCAGCTCAAGCACATAACATATAGAGGCTAGAGCTGCTTGATGCCGAGAACGTACGATGAACTGCACCAAGAAGGCACTTCTCTTCATTAGGCAAGTGATTACAAGCAAATGTTTGTCAATCGTTTTTAACAATAAAAAAAAATGTTTGTTAGTCATTGTCAAATAGTTTTCTTTTTCTTTAAAGTTTTACTTGCTAAGGGATACACCATTGGTGTCCTTTTTATAGGAACCAAAAGCAGAAAAGGTCCATTTTGTGTAGTCAGGAAAGTTAT</gDNA_template>
            <first_frame> L  A  L  F  I  G  F  L  I  E  F  F  S  H  H  R  W  I  S  F  S  T  E  I  C  L  N  M  L  N  R :   W  E  T  V  K  A  W  V  H  N  F  I  R  S  L  L  K  R  F  R  W  R  F  L  L  A  G  F  T  A  L  A  I  A  A  I  S  W  K  L  E  T  S  Q  N  Y  W  I  W  H  S :   A  W  H  V  T  I  Y  T  S  S  F  L  F  L  C  S  K  A  T  A  V  N  C  D  N  E  Q  P  R  S  E  N  Y  E  L  A  R  Q  N  S  F  N  G  S  S  E  R  G  G  R  *  F  V  I  E  S  T  S  A  Q  A  H  N  I  *  R  L  E  L  L  D  A  E  N  V  R  *  T  A  P  R  R  H  F  S  S  L  G  K  *  L  Q  A  N  V  C  Q  S  F  L  T  I  K  K  N  V  C  *  S  L  S  N  S  F  L  F  L  *  S  F  T  C  *  G  I  H  H  W  C  P  F  Y  R  N  Q  K  Q  K  R  S  I  L  C  S  Q  E  S  Y </first_frame>
            <second_frame>  W  L  C  S  L  G  S  S  L  N  S  L  V  I  I  D  G  F  P  F  Q  Q  K  F  V  *  T  C  S  T   : D  G  K  L  *  K  H  G  F  I  I  S  F  G  L  F  *  S  A  F  G  G  A  F  Y  L  R  D  S  L  H  *  Q  *  L  L  L  A  G  N  L  K  Q  V  K  I  T  G  Y  G  T   : V  H  G  M  L  R  Y  I  L  L  H  F  F  F  S  V  Q  K  Q  Q  Q  L  T  V  I  T  N  N  L  D  Q  R  T  M  S  W  L  G  K  I  L  S  M  V  V  A  K  E  V  V  D  S  S  *  *  N  L  L  Q  L  K  H  I  T  Y  R  G  *  S  C  L  M  P  R  T  Y  D  E  L  H  Q  E  G  T  S  L  H  *  A  S  D  Y  K  Q  M  F  V  N  R  F  *  Q  *  K  K  M  F  V  S  H  C  Q  I  V  F  F  F  F  K  V  L  L  A  K  G  Y  T  I  G  V  L  F  I  G  T  K  S  R  K  G  P  F  C  V  V  R  K  V   </second_frame>
            <third_frame>   G  S  V  H  W  V  P  H  *  I  L  *  S  S  *  M  D  F  L  F  N  R  N  L  F  E  H  A  Q  Q  :  M  G  N  C  K  S  M  G  S  *  F  H  S  V  S  S  E  A  L  S  V  A  L  S  T  C  G  I  H  C  I  S  N  S  C  Y  *  L  E  T  *  N  K  S  K  L  L  D  M  A  Q  :  C  M  A  C  Y  D  I  Y  F  F  I  S  F  S  L  F  K  S  N  S  S  *  L  *  *  R  T  T  S  I  R  E  L  *  V  G  S  A  K  F  F  Q  W  *  *  R  K  R  W  *  I  V  R  N  R  I  Y  F  S  S  S  T  *  H  I  E  A  R  A  A  *  C  R  E  R  T  M  N  C  T  K  K  A  L  L  F  I  R  Q  V  I  T  S  K  C  L  S  I  V  F  N  N  K  K  K  C  L  L  V  I  V  K  *  F  S  F  S  L  K  F  Y  L  L  R  D  T  P  L  V  S  F  L  *  E  P  K  A  E  K  V  H  F  V  *  S  G  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58568" stop="58659"/>
                    <exon start="58778" stop="58930"/>
                    <exon start="59026" stop="59179"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LALFIGFLIEFFSHHRWISFSTEICLNMLNRWETVKAWVHNFIRSLLKRFRWRFLLAGFTALAIAAISWKLETSQNYWIWHSAWHVTIYTSSFLFLCSKATAVNCDNEQPRSENYELARQNSFNGSSERGGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="65142" PGL_stop="68629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65142" e_stop="65211"/>
            <exon e_start="66555" e_stop="66703"/>
            <exon e_start="67332" e_stop="67710"/>
            <exon e_start="67841" e_stop="67950"/>
            <exon e_start="68200" e_stop="68629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.302" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.803" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65142" e_stop="65211" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65212" i_stop="66554" i_length="1343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66555" e_stop="66703" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66704" i_stop="67331" i_length="628"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67332" e_stop="67710" e_length="379"/>
          </exon>
          <intron i_serial="3" don_prob="0.302" acc_prob="0.992">
            <gDNA_intron_boundary i_start="67711" i_stop="67840" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67841" e_stop="67950" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.813" acc_prob="0.803">
            <gDNA_intron_boundary i_start="67951" i_stop="68199" i_length="249"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68200" e_stop="68629" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65142" stop="65211"/>
              <exon start="66555" stop="66703"/>
              <exon start="67332" stop="67710"/>
              <exon start="67841" stop="67950"/>
              <exon start="68200" stop="68629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTGGTTATTGGTAAAGCTTCTGTTTTTCCTCCTTTTGTCTTGTTTCTAGTGTGCCACTACCTCTGTAT : TGAATTGTCCCTCTTCATACAGACGGAGAAGGTAATGTGTTGGGAAATAAGACATATACTTGGATAACTAAAACATCTGCAAGATGGGTGGTTGCTGTTGCTCTTCAAGGAAGCCTCCCCAGCTTCATGGAACACAAGTATTTTACTAT : TTTCCTCCAGCTTCTGAAGAGTATGAGTCCCTGACATCTGATGATAGTGCTGCTATTGCATTTACCTCTGAGCTCCTGGATGATTTAAACGTAGATAGATCAACACCCGACACTTACCGCTCTCCCCCTGCACCAATTCCATTTGAAGTAGATTTGGGGCATCCACAGTCAAGAGGAGGTTCCCAGTTCATAGATGAAACATTACTTCAACGTAGCTATGAGATAACTAATTGTAAAGATATTAAGTTTTCTGATCGCAAAGCTGAAACAGAGTCTCTTCTTGCCTCCCTAAAGAAAGCAGGGATTGACCTTGTAAAATCTAATCCATCTATTATTAAATCAGCAGAAGAAGAGGATGTTTGTCCTACTTGTCTTGAAG : AATATGATGTCGACAATCCAAGAATAGTCTCAAAATGTAACCACCATTTTCATCTTTCATGCATTCTTGAGTGGATGGAAAGAAGTCAAACATGCCCAATATGCGATCAG : GAAATGGTATACGAAGCTCTATGAAAACTAATTAAAAGTTCCTTAGATGCTGGTCGTCAACATGAGGCTGTTGTTTTTCACTTGGCGGCTTGGCCTGTATTCACTTGTTCACTCATGAAAGTGTAAATTCTCTATGTATATGAAGCTTACGTTGGTAAATCCCGCCCTTGATGAAGATGCGAGTTGCATATATATGCTGATGGGAGTTAATTTGCGGGCGAAGAACAAAAAAACAAGTTGTAGTTTTGCATTTGGTGCCTGGAAGATTAAATTCTGAAAACGCGTCTTTTTGGTCATGATTCTTCTGAGTTCCAAGTGTTGTACAGTGAACCCTTTTGGTGGTTGTAATTTTATGTTCAATTGCTGTACAGATTCTTCTGTCAAAGATTATGGCAATGGCATAGTCATTAAAGTTTCATAGACTCATTTC</gDNA_template>
            <first_frame> V  W  L  L  V  K  L  L  F  F  L  L  L  S  C  F  *  C  A  T  T  S  V   : L  N  C  P  S  S  Y  R  R  R  R  *  C  V  G  K  *  D  I  Y  L  D  N  *  N  I  C  K  M  G  G  C  C  C  S  S  R  K  P  P  Q  L  H  G  T  Q  V  F  Y  Y  :  F  P  P  A  S  E  E  Y  E  S  L  T  S  D  D  S  A  A  I  A  F  T  S  E  L  L  D  D  L  N  V  D  R  S  T  P  D  T  Y  R  S  P  P  A  P  I  P  F  E  V  D  L  G  H  P  Q  S  R  G  G  S  Q  F  I  D  E  T  L  L  Q  R  S  Y  E  I  T  N  C  K  D  I  K  F  S  D  R  K  A  E  T  E  S  L  L  A  S  L  K  K  A  G  I  D  L  V  K  S  N  P  S  I  I  K  S  A  E  E  E  D  V  C  P  T  C  L  E   : E  Y  D  V  D  N  P  R  I  V  S  K  C  N  H  H  F  H  L  S  C  I  L  E  W  M  E  R  S  Q  T  C  P  I  C  D  Q  :  E  M  V  Y  E  A  L  *  K  L  I  K  S  S  L  D  A  G  R  Q  H  E  A  V  V  F  H  L  A  A  W  P  V  F  T  C  S  L  M  K  V  *  I  L  Y  V  Y  E  A  Y  V  G  K  S  R  P  *  *  R  C  E  L  H  I  Y  A  D  G  S  *  F  A  G  E  E  Q  K  N  K  L  *  F  C  I  W  C  L  E  D  *  I  L  K  T  R  L  F  G  H  D  S  S  E  F  Q  V  L  Y  S  E  P  F  W  W  L  *  F  Y  V  Q  L  L  Y  R  F  F  C  Q  R  L  W  Q  W  H  S  H  *  S  F  I  D  S  F  </first_frame>
            <second_frame>  C  G  Y  W  *  S  F  C  F  S  S  F  C  L  V  S  S  V  P  L  P  L  Y  :  *  I  V  P  L  H  T  D  G  E  G  N  V  L  G  N  K  T  Y  T  W  I  T  K  T  S  A  R  W  V  V  A  V  A  L  Q  G  S  L  P  S  F  M  E  H  K  Y  F  T  I :   F  L  Q  L  L  K  S  M  S  P  *  H  L  M  I  V  L  L  L  H  L  P  L  S  S  W  M  I  *  T  *  I  D  Q  H  P  T  L  T  A  L  P  L  H  Q  F  H  L  K  *  I  W  G  I  H  S  Q  E  E  V  P  S  S  *  M  K  H  Y  F  N  V  A  M  R  *  L  I  V  K  I  L  S  F  L  I  A  K  L  K  Q  S  L  F  L  P  P  *  R  K  Q  G  L  T  L  *  N  L  I  H  L  L  L  N  Q  Q  K  K  R  M  F  V  L  L  V  L  K  :  N  M  M  S  T  I  Q  E  *  S  Q  N  V  T  T  I  F  I  F  H  A  F  L  S  G  W  K  E  V  K  H  A  Q  Y  A  I  R :   K  W  Y  T  K  L  Y  E  N  *  L  K  V  P  *  M  L  V  V  N  M  R  L  L  F  F  T  W  R  L  G  L  Y  S  L  V  H  S  *  K  C  K  F  S  M  Y  M  K  L  T  L  V  N  P  A  L  D  E  D  A  S  C  I  Y  M  L  M  G  V  N  L  R  A  K  N  K  K  T  S  C  S  F  A  F  G  A  W  K  I  K  F  *  K  R  V  F  L  V  M  I  L  L  S  S  K  C  C  T  V  N  P  F  G  G  C  N  F  M  F  N  C  C  T  D  S  S  V  K  D  Y  G  N  G  I  V  I  K  V  S  *  T  H  F </second_frame>
            <third_frame>   V  V  I  G  K  A  S  V  F  P  P  F  V  L  F  L  V  C  H  Y  L  C  I :   E  L  S  L  F  I  Q  T  E  K  V  M  C  W  E  I  R  H  I  L  G  *  L  K  H  L  Q  D  G  W  L  L  L  L  F  K  E  A  S  P  A  S  W  N  T  S  I  L  L   : F  S  S  S  F  *  R  V  *  V  P  D  I  *  *  *  C  C  Y  C  I  Y  L  *  A  P  G  *  F  K  R  R  *  I  N  T  R  H  L  P  L  S  P  C  T  N  S  I  *  S  R  F  G  A  S  T  V  K  R  R  F  P  V  H  R  *  N  I  T  S  T  *  L  *  D  N  *  L  *  R  Y  *  V  F  *  S  Q  S  *  N  R  V  S  S  C  L  P  K  E  S  R  D  *  P  C  K  I  *  S  I  Y  Y  *  I  S  R  R  R  G  C  L  S  Y  L  S  *  R :   I  *  C  R  Q  S  K  N  S  L  K  M  *  P  P  F  S  S  F  M  H  S  *  V  D  G  K  K  S  N  M  P  N  M  R  S   : G  N  G  I  R  S  S  M  K  T  N  *  K  F  L  R  C  W  S  S  T  *  G  C  C  F  S  L  G  G  L  A  C  I  H  L  F  T  H  E  S  V  N  S  L  C  I  *  S  L  R  W  *  I  P  P  L  M  K  M  R  V  A  Y  I  C  *  W  E  L  I  C  G  R  R  T  K  K  Q  V  V  V  L  H  L  V  P  G  R  L  N  S  E  N  A  S  F  W  S  *  F  F  *  V  P  S  V  V  Q  *  T  L  L  V  V  V  I  L  C  S  I  A  V  Q  I  L  L  S  K  I  M  A  M  A  *  S  L  K  F  H  R  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66626" stop="66703"/>
                    <exon start="67332" stop="67710"/>
                    <exon start="67841" stop="67950"/>
                    <exon start="68200" stop="68223"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NICKMGGCCCSSRKPPQLHGTQVFYYFPPASEEYESLTSDDSAAIAFTSELLDDLNVDRSTPDTYRSPPAPIPFEVDLGHPQSRGGSQFIDETLLQRSYEITNCKDIKFSDRKAETESLLASLKKAGIDLVKSNPSIIKSAEEEDVCPTCLEEYDVDNPRIVSKCNHHFHLSCILEWMERSQTCPICDQEMVYEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="84516" PGL_stop="84307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84516" e_stop="84307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="84516" e_stop="84307" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84516" stop="84307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAAGTATTCCATAGACTATAAGAGAAAATGGTCTGTGAAGAAAAATAGAGTGTGAACGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCTTG</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  R  L  *  E  K  M  V  C  E  E  K  *  S  V  N  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  L </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  K  Y  S  I  D  Y  K  R  K  W  S  V  K  K  N  R  V  *  T  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S   </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  S  I  P  *  T  I  R  E  N  G  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  H  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  V  I  S  V  A  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0034P21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87291" PGL_stop="86895"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87291" e_stop="86895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="87291" e_stop="86895" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87291" stop="86895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCAAAACCCCCTTCAAATCCAGCTCAAGGTCCATCCGAACAGCACTAAAACCCAAAGCACTCTTCTTAACCTCACTCTTTTCATTATCAGGTTGCTCAAGTTTCACCATTGCTCTGTTCAATGCATCCAAGTACTTAACATACACCAACTTCAAAGCCGAACCAGTTGTTAAATCAAACCCACACTCTACAGCAACCACACCCCAAGACCGACTTGCACAAACCCTTTCGTACCCACCCTTCTCCCTCACAACCAAGAACAGTTCGCACAAATCCACCGCCTTCCCATCACCGAGCATCCGAGGAAATGGCCTAAAACACAAACACCCATTAACCTCTTTTAACAAACGATTAACAAGAACACTATCAAGCTTCGAAACATTTTCTACTGACCTG</gDNA_template>
            <first_frame> H  Q  N  P  L  Q  I  Q  L  K  V  H  P  N  S  T  K  T  Q  S  T  L  L  N  L  T  L  F  I  I  R  L  L  K  F  H  H  C  S  V  Q  C  I  Q  V  L  N  I  H  Q  L  Q  S  R  T  S  C  *  I  K  P  T  L  Y  S  N  H  T  P  R  P  T  C  T  N  P  F  V  P  T  L  L  P  H  N  Q  E  Q  F  A  Q  I  H  R  L  P  I  T  E  H  P  R  K  W  P  K  T  Q  T  P  I  N  L  F  *  Q  T  I  N  K  N  T  I  K  L  R  N  I  F  Y  *  P  </first_frame>
            <second_frame>  I  K  T  P  F  K  S  S  S  R  S  I  R  T  A  L  K  P  K  A  L  F  L  T  S  L  F  S  L  S  G  C  S  S  F  T  I  A  L  F  N  A  S  K  Y  L  T  Y  T  N  F  K  A  E  P  V  V  K  S  N  P  H  S  T  A  T  T  P  Q  D  R  L  A  Q  T  L  S  Y  P  P  F  S  L  T  T  K  N  S  S  H  K  S  T  A  F  P  S  P  S  I  R  G  N  G  L  K  H  K  H  P  L  T  S  F  N  K  R  L  T  R  T  L  S  S  F  E  T  F  S  T  D  L </second_frame>
            <third_frame>   S  K  P  P  S  N  P  A  Q  G  P  S  E  Q  H  *  N  P  K  H  S  S  *  P  H  S  F  H  Y  Q  V  A  Q  V  S  P  L  L  C  S  M  H  P  S  T  *  H  T  P  T  S  K  P  N  Q  L  L  N  Q  T  H  T  L  Q  Q  P  H  P  K  T  D  L  H  K  P  F  R  T  H  P  S  P  S  Q  P  R  T  V  R  T  N  P  P  P  S  H  H  R  A  S  E  E  M  A  *  N  T  N  T  H  *  P  L  L  T  N  D  *  Q  E  H  Y  Q  A  S  K  H  F  L  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87290" stop="86895"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKTPFKSSSRSIRTALKPKALFLTSLFSLSGCSSFTIALFNASKYLTYTNFKAEPVVKSNPHSTATTPQDRLAQTLSYPPFSLTTKNSSHKSTAFPSPSIRGNGLKHKHPLTSFNKRLTRTLSSFETFSTDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="90119" PGL_stop="91115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90119" e_stop="91115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="90119" e_stop="91115" e_length="997"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90119" stop="91115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAAACAGAAAATGCATCCATCTATGTATGATAATAATAGTGGGTCTGAGCAGCTAAGGTGCAGCCAAAGGGTCCAATCTGCAAAAGATTATTCGAAAAAATCAGGTTCTCATATTGATGCAACTCTGATAAACAGACCTACCGACTCTTCTGCAGAGTCAGGAGTTTGGTGGAACCGTCGGCGTAAGAAAATAGCATCAATTGGGTCGGAGTTCCAAGCAGATATTCCTGAGTGTAATAAGGACATCTATGAATCTGACTCTAAATGGTTGGGCACCCGAATCTGGCCACTGGATAAAAATGAACAGCGCAGAATATTAATTGAAAGAGATCCTGCTGGGAAAGGAAGGGATGATACATGTGGTTGTGAATATGCAGGTTCTTATGACTGCATTAGGTTTCACCTATCTGAGAAGAGAAAGAAGCTTGAAGTTGAGCTAGGATCCGCCTTTTATCACTGGAAATTTGACTGCATGGGTGAAAAGGTTGCACTCTCTTGGACATCAAACGACAAACAGAAATTCCATGATATAGCAAAGTCGATCCCTTTATCTGAGGATGAAAGTTTCAGTTACTGGCCTGACCTTTTTAAGTTCTTCCCTCACAGAAGCAGAGAATCTTTGGTAAGCTACTATTTCAATGTCTCCAATCTACACCGCATAGGTCAGCAGAATAGGATGAATACAAGTTACGTTGACAGTGATGATGATGAATCAGGGTGTGGACCTAGGTCTATTTCTTTTGGGCGGGATCCTAAGTCCTCCATCTCTTGTTCCACAAAGAAAACACGTCTAGATCCCATATAGTAACAAACAGGTGGATGGATGTTAACATCAATGGCTTTTGTTCAGAAATGTAAATTCGCGGAGTCTCTTGTTCTCTTTTACATCAGCAATATTTTTTGGGTCTGTGGATACAATGAGTTTGAGGGGAGTTTTACAGATATCAATTTTTGTTCTGCATTTCTCAATGTATACAGTTTATACTCCCTTTAG</gDNA_template>
            <first_frame> A  K  T  E  N  A  S  I  Y  V  *  *  *  *  W  V  *  A  A  K  V  Q  P  K  G  P  I  C  K  R  L  F  E  K  I  R  F  S  Y  *  C  N  S  D  K  Q  T  Y  R  L  F  C  R  V  R  S  L  V  E  P  S  A  *  E  N  S  I  N  W  V  G  V  P  S  R  Y  S  *  V  *  *  G  H  L  *  I  *  L  *  M  V  G  H  P  N  L  A  T  G  *  K  *  T  A  Q  N  I  N  *  K  R  S  C  W  E  R  K  G  *  Y  M  W  L  *  I  C  R  F  L  *  L  H  *  V  S  P  I  *  E  E  K  E  A  *  S  *  A  R  I  R  L  L  S  L  E  I  *  L  H  G  *  K  G  C  T  L  L  D  I  K  R  Q  T  E  I  P  *  Y  S  K  V  D  P  F  I  *  G  *  K  F  Q  L  L  A  *  P  F  *  V  L  P  S  Q  K  Q  R  I  F  G  K  L  L  F  Q  C  L  Q  S  T  P  H  R  S  A  E  *  D  E  Y  K  L  R  *  Q  *  *  *  *  I  R  V  W  T  *  V  Y  F  F  W  A  G  S  *  V  L  H  L  L  F  H  K  E  N  T  S  R  S  H  I  V  T  N  R  W  M  D  V  N  I  N  G  F  C  S  E  M  *  I  R  G  V  S  C  S  L  L  H  Q  Q  Y  F  L  G  L  W  I  Q  *  V  *  G  E  F  Y  R  Y  Q  F  L  F  C  I  S  Q  C  I  Q  F  I  L  P  L  </first_frame>
            <second_frame>  Q  K  Q  K  M  H  P  S  M  Y  D  N  N  S  G  S  E  Q  L  R  C  S  Q  R  V  Q  S  A  K  D  Y  S  K  K  S  G  S  H  I  D  A  T  L  I  N  R  P  T  D  S  S  A  E  S  G  V  W  W  N  R  R  R  K  K  I  A  S  I  G  S  E  F  Q  A  D  I  P  E  C  N  K  D  I  Y  E  S  D  S  K  W  L  G  T  R  I  W  P  L  D  K  N  E  Q  R  R  I  L  I  E  R  D  P  A  G  K  G  R  D  D  T  C  G  C  E  Y  A  G  S  Y  D  C  I  R  F  H  L  S  E  K  R  K  K  L  E  V  E  L  G  S  A  F  Y  H  W  K  F  D  C  M  G  E  K  V  A  L  S  W  T  S  N  D  K  Q  K  F  H  D  I  A  K  S  I  P  L  S  E  D  E  S  F  S  Y  W  P  D  L  F  K  F  F  P  H  R  S  R  E  S  L  V  S  Y  Y  F  N  V  S  N  L  H  R  I  G  Q  Q  N  R  M  N  T  S  Y  V  D  S  D  D  D  E  S  G  C  G  P  R  S  I  S  F  G  R  D  P  K  S  S  I  S  C  S  T  K  K  T  R  L  D  P  I  *  *  Q  T  G  G  W  M  L  T  S  M  A  F  V  Q  K  C  K  F  A  E  S  L  V  L  F  Y  I  S  N  I  F  W  V  C  G  Y  N  E  F  E  G  S  F  T  D  I  N  F  C  S  A  F  L  N  V  Y  S  L  Y  S  L  * </second_frame>
            <third_frame>   K  N  R  K  C  I  H  L  C  M  I  I  I  V  G  L  S  S  *  G  A  A  K  G  S  N  L  Q  K  I  I  R  K  N  Q  V  L  I  L  M  Q  L  *  *  T  D  L  P  T  L  L  Q  S  Q  E  F  G  G  T  V  G  V  R  K  *  H  Q  L  G  R  S  S  K  Q  I  F  L  S  V  I  R  T  S  M  N  L  T  L  N  G  W  A  P  E  S  G  H  W  I  K  M  N  S  A  E  Y  *  L  K  E  I  L  L  G  K  E  G  M  I  H  V  V  V  N  M  Q  V  L  M  T  A  L  G  F  T  Y  L  R  R  E  R  S  L  K  L  S  *  D  P  P  F  I  T  G  N  L  T  A  W  V  K  R  L  H  S  L  G  H  Q  T  T  N  R  N  S  M  I  *  Q  S  R  S  L  Y  L  R  M  K  V  S  V  T  G  L  T  F  L  S  S  S  L  T  E  A  E  N  L  W  *  A  T  I  S  M  S  P  I  Y  T  A  *  V  S  R  I  G  *  I  Q  V  T  L  T  V  M  M  M  N  Q  G  V  D  L  G  L  F  L  L  G  G  I  L  S  P  P  S  L  V  P  Q  R  K  H  V  *  I  P  Y  S  N  K  Q  V  D  G  C  *  H  Q  W  L  L  F  R  N  V  N  S  R  S  L  L  F  S  F  T  S  A  I  F  F  G  S  V  D  T  M  S  L  R  G  V  L  Q  I  S  I  F  V  L  H  F  S  M  Y  T  V  Y  T  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90120" stop="90926"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKQKMHPSMYDNNSGSEQLRCSQRVQSAKDYSKKSGSHIDATLINRPTDSSAESGVWWNRRRKKIASIGSEFQADIPECNKDIYESDSKWLGTRIWPLDKNEQRRILIERDPAGKGRDDTCGCEYAGSYDCIRFHLSEKRKKLEVELGSAFYHWKFDCMGEKVALSWTSNDKQKFHDIAKSIPLSEDESFSYWPDLFKFFPHRSRESLVSYYFNVSNLHRIGQQNRMNTSYVDSDDDESGCGPRSISFGRDPKSSISCSTKKTRLDPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="93701" PGL_stop="96910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93701" e_stop="93810"/>
            <exon e_start="93937" e_stop="94016"/>
            <exon e_start="94600" e_stop="94714"/>
            <exon e_start="94807" e_stop="94859"/>
            <exon e_start="94974" e_stop="95095"/>
            <exon e_start="95152" e_stop="95158"/>
            <exon e_start="96604" e_stop="96910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.541" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.494" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.976" e_score="0.857"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93701" e_stop="93810" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93811" i_stop="93936" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93937" e_stop="94016" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.853">
            <gDNA_intron_boundary i_start="94017" i_stop="94599" i_length="583"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94600" e_stop="94714" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.541" acc_prob="0.859">
            <gDNA_intron_boundary i_start="94715" i_stop="94806" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94807" e_stop="94859" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.559" acc_prob="0.494">
            <gDNA_intron_boundary i_start="94860" i_stop="94973" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94974" e_stop="95095" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.842" acc_prob="0.967">
            <gDNA_intron_boundary i_start="95096" i_stop="95151" i_length="56"/>
          </intron>
          <exon e_serial="6" e_score="0.857">
            <gDNA_exon_boundary e_start="95152" e_stop="95158" e_length="7"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.976">
            <gDNA_intron_boundary i_start="95159" i_stop="96603" i_length="1445"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="96604" e_stop="96910" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93701" stop="93810"/>
              <exon start="93937" stop="94016"/>
              <exon start="94600" stop="94714"/>
              <exon start="94807" stop="94859"/>
              <exon start="94974" stop="95095"/>
              <exon start="95152" stop="95158"/>
              <exon start="96604" stop="96910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAGTATTACAAAGAACTCTTTTTTTTCTCTCTCTCTAGAATCATCCAAAAGAAGAAAGCAACCATGTCTTCTCCAAGCAAACGCCGTGAAATGGACCTTATGAAACT : AATGATGAGCGATTACAAGGTGGAGATGATTAATGATGGCATGCAAGAGTTTTATGTGCATTTTCATGGACCTGCTGAAA : GTCCTTATCATGGCGGTGTGTGGAAAATAAGGGTGGAACTTCCTGATGCTTACCCATATAAATCTCCATCCATTGGTTTTATTAATAAAATCTACCACCCAAATGTTGATGAGAT : GTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACTTGGAGTCCCATGTTTG : ATTTGGTAAATGTGTTTGAAGTGTTTCTTCCACAACTTCTCTTGTATCCAAATCCATCAGACCCATTGAATGGAGAGGCTGCTGCCCTTATGATGCGAGACCGGGCTGCCTATGAACTAAGA : GTTCAAG : AATTTTGTCAGAAATATGCCAAGCCTGAAGATGTTGGAGCTGCTGCCCCTGAGGAGAAGTCAAGTGATGAGGAGTTGAGTGAAGCTGAATATGATTCAGCTGATGATGCAGTTGCAGGCCCTGTTGATCCATGACCGACTCCCGCACTCATTGACTTTATGTATCTGTAAATGATGTTCTTAGTCCTGTTTAATATCAAGCTGAACTACAAAGTTCAAGACAATGTTCCCCTTGTTTTATTAGTTTAGCTTCAATGTAAATAATTTCACCCTTTAATTACTGTGTTCATATTTGCTGTTATCTGCTG</gDNA_template>
            <first_frame> F  *  Y  Y  K  E  L  F  F  F  S  L  S  R  I  I  Q  K  K  K  A  T  M  S  S  P  S  K  R  R  E  M  D  L  M  K  L :   M  M  S  D  Y  K  V  E  M  I  N  D  G  M  Q  E  F  Y  V  H  F  H  G  P  A  E   : S  P  Y  H  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  I  N  K  I  Y  H  P  N  V  D  E  M :   S  G  S  V  C  L  D  V  I  N  Q  T  W  S  P  M  F   : D  L  V  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  E  A  A  A  L  M  M  R  D  R  A  A  Y  E  L  R  :  V  Q   : E  F  C  Q  K  Y  A  K  P  E  D  V  G  A  A  A  P  E  E  K  S  S  D  E  E  L  S  E  A  E  Y  D  S  A  D  D  A  V  A  G  P  V  D  P  *  P  T  P  A  L  I  D  F  M  Y  L  *  M  M  F  L  V  L  F  N  I  K  L  N  Y  K  V  Q  D  N  V  P  L  V  L  L  V  *  L  Q  C  K  *  F  H  P  L  I  T  V  F  I  F  A  V  I  C   </first_frame>
            <second_frame>  F  S  I  T  K  N  S  F  F  S  L  S  L  E  S  S  K  R  R  K  Q  P  C  L  L  Q  A  N  A  V  K  W  T  L  *  N   : *  *  *  A  I  T  R  W  R  *  L  M  M  A  C  K  S  F  M  C  I  F  M  D  L  L  K  :  V  L  I  M  A  V  C  G  K  *  G  W  N  F  L  M  L  T  H  I  N  L  H  P  L  V  L  L  I  K  S  T  T  Q  M  L  M  R   : C  L  A  Q  F  V  *  M  L  S  I  R  L  G  V  P  C  L  :  I  W  *  M  C  L  K  C  F  F  H  N  F  S  C  I  Q  I  H  Q  T  H  *  M  E  R  L  L  P  L  *  C  E  T  G  L  P  M  N  *  E :   F  K  :  N  F  V  R  N  M  P  S  L  K  M  L  E  L  L  P  L  R  R  S  Q  V  M  R  S  *  V  K  L  N  M  I  Q  L  M  M  Q  L  Q  A  L  L  I  H  D  R  L  P  H  S  L  T  L  C  I  C  K  *  C  S  *  S  C  L  I  S  S  *  T  T  K  F  K  T  M  F  P  L  F  Y  *  F  S  F  N  V  N  N  F  T  L  *  L  L  C  S  Y  L  L  L  S  A  </second_frame>
            <third_frame>   L  V  L  Q  R  T  L  F  F  L  S  L  *  N  H  P  K  E  E  S  N  H  V  F  S  K  Q  T  P  *  N  G  P  Y  E  T  :  N  D  E  R  L  Q  G  G  D  D  *  *  W  H  A  R  V  L  C  A  F  S  W  T  C  *  K :   S  L  S  W  R  C  V  E  N  K  G  G  T  S  *  C  L  P  I  *  I  S  I  H  W  F  Y  *  *  N  L  P  P  K  C  *  *  D  :  V  W  L  S  L  F  R  C  Y  Q  S  D  L  E  S  H  V  * :   F  G  K  C  V  *  S  V  S  S  T  T  S  L  V  S  K  S  I  R  P  I  E  W  R  G  C  C  P  Y  D  A  R  P  G  C  L  *  T  K   : S  S  R :   I  L  S  E  I  C  Q  A  *  R  C  W  S  C  C  P  *  G  E  V  K  *  *  G  V  E  *  S  *  I  *  F  S  *  *  C  S  C  R  P  C  *  S  M  T  D  S  R  T  H  *  L  Y  V  S  V  N  D  V  L  S  P  V  *  Y  Q  A  E  L  Q  S  S  R  Q  C  S  P  C  F  I  S  L  A  S  M  *  I  I  S  P  F  N  Y  C  V  H  I  C  C  Y  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93707" stop="93810"/>
                    <exon start="93937" stop="94016"/>
                    <exon start="94600" stop="94714"/>
                    <exon start="94807" stop="94859"/>
                    <exon start="94974" stop="95095"/>
                    <exon start="95152" stop="95158"/>
                    <exon start="96604" stop="96737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYKELFFFSLSRIIQKKKATMSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPAESPYHGGVWKIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAAYELRVQEFCQKYAKPEDVGAAAPEEKSSDEELSEAEYDSADDAVAGPVDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="100189" PGL_stop="98073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100189" e_stop="100096"/>
            <exon e_start="99463" e_stop="99212"/>
            <exon e_start="98919" e_stop="98073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="100189" e_stop="100096" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="100095" i_stop="99464" i_length="632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99463" e_stop="99212" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99211" i_stop="98920" i_length="292"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="98919" e_stop="98073" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100189" stop="100096"/>
              <exon start="99463" stop="99212"/>
              <exon start="98919" stop="98073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578774" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACCCACAAGGGAAAGTTGGGATAATAAGCTCATGAATGCCAGCGGGACTTATAGTGGAGGGACTAAGATGTCTGAGGTCATTCAAAGAAAG : TGCAAAACTGTCGTTACCAAACTCCAAAAGAAAATAGAGAAGGGAGGTCATCAAATAATTCCGCTGCTACACGGTCTGTGGAAAAGAATTGGTAGTTCTGGTTGCATGGGTGGGTCAGAGGATAGTCCGTTTGGTTTACAGACAATTGATCTACGCGTTGATGAGTCTGAGTACAGCGGAGTGCTCGAATTTGTGTCTGATGTGCAGCTGATGTTAAAACGTGCAGTACAGTACTTCGGTTTCTCACATGAG : GTGAGATCTGAAGCAAGGAAAGTGCATGATCTTTTCTTTGACATCTTGAAGATAGAATTTCCGGAGACTGATTTTCGAGAAGCAAGGAATTCCATTTCTTTTGCTGGACCAGCAGCTTCTACTACACCCGCGTCTTCACGGCTGATGCCTGTAGGTCAAAACAAGAGACACAAACTGATAAATGAAATGGAACCCGACTCTAGCCCACTGCTGAAGCCGCAGACACGTGGAACACTCCATGCCGGTGAAGATGCCAAGGCTAAGAGTCATATGGCTCAAAGAGAAACAAGATTTGGTGGTAGCAGTAGCCGGGAGCTTAGCCAACAGGATGATTCACGCCCATTCACTCATCCCGGGGAGCTTGTTATTTGCAAAAAGAAAAGAAAAGATAGAGAGAAGTTGGGTTTGAAACCCGGGAGTAGTTCTGCTGGTCCTGTCTCACCACCTGGTGTCAGCCGCAGTATCAGAAGTCCTGGCTCACTCCCAACTGTGAAGGAGGGGGGAAGGTTAAACCAGCAGACACCCCAACAGTTGAATGGCAGTGGTAGCAGTAGCTCTGTTGGCTGGGCAAACCCTGTGAAGAGATTGAGATCAGATTCTGCAAGAAGACGGCAAAGTCATTTATGATTATTGTTTTGTTAAAGGTGTACACTGTAATGCAAGTAGTAGCTGTACTGAGTGAGGTGCTGTGAATAACCGGCCCTTCGGTATTTTCATACCTCCTGACCTGTGTACTTCCCCATTTCATCCCCAGCCTCACCTGTATGATAAATTTGCTTTTAAACATAGGTTTCTTAATGTCTACCATTGGCAACTGCTTGTCAGTGATAATTCTCTCCTTCTCCAT</gDNA_template>
            <first_frame> *  T  H  K  G  K  L  G  *  *  A  H  E  C  Q  R  D  L  *  W  R  D  *  D  V  *  G  H  S  K  K   : V  Q  N  C  R  Y  Q  T  P  K  E  N  R  E  G  R  S  S  N  N  S  A  A  T  R  S  V  E  K  N  W  *  F  W  L  H  G  W  V  R  G  *  S  V  W  F  T  D  N  *  S  T  R  *  *  V  *  V  Q  R  S  A  R  I  C  V  *  C  A  A  D  V  K  T  C  S  T  V  L  R  F  L  T  *   : G  E  I  *  S  K  E  S  A  *  S  F  L  *  H  L  E  D  R  I  S  G  D  *  F  S  R  S  K  E  F  H  F  F  C  W  T  S  S  F  Y  Y  T  R  V  F  T  A  D  A  C  R  S  K  Q  E  T  Q  T  D  K  *  N  G  T  R  L  *  P  T  A  E  A  A  D  T  W  N  T  P  C  R  *  R  C  Q  G  *  E  S  Y  G  S  K  R  N  K  I  W  W  *  Q  *  P  G  A  *  P  T  G  *  F  T  P  I  H  S  S  R  G  A  C  Y  L  Q  K  E  K  K  R  *  R  E  V  G  F  E  T  R  E  *  F  C  W  S  C  L  T  T  W  C  Q  P  Q  Y  Q  K  S  W  L  T  P  N  C  E  G  G  G  K  V  K  P  A  D  T  P  T  V  E  W  Q  W  *  Q  *  L  C  W  L  G  K  P  C  E  E  I  E  I  R  F  C  K  K  T  A  K  S  F  M  I  I  V  L  L  K  V  Y  T  V  M  Q  V  V  A  V  L  S  E  V  L  *  I  T  G  P  S  V  F  S  Y  L  L  T  C  V  L  P  H  F  I  P  S  L  T  C  M  I  N  L  L  L  N  I  G  F  L  M  S  T  I  G  N  C  L  S  V  I  I  L  S  F  S   </first_frame>
            <second_frame>  E  P  T  R  E  S  W  D  N  K  L  M  N  A  S  G  T  Y  S  G  G  T  K  M  S  E  V  I  Q  R  K  :  C  K  T  V  V  T  K  L  Q  K  K  I  E  K  G  G  H  Q  I  I  P  L  L  H  G  L  W  K  R  I  G  S  S  G  C  M  G  G  S  E  D  S  P  F  G  L  Q  T  I  D  L  R  V  D  E  S  E  Y  S  G  V  L  E  F  V  S  D  V  Q  L  M  L  K  R  A  V  Q  Y  F  G  F  S  H  E  :  V  R  S  E  A  R  K  V  H  D  L  F  F  D  I  L  K  I  E  F  P  E  T  D  F  R  E  A  R  N  S  I  S  F  A  G  P  A  A  S  T  T  P  A  S  S  R  L  M  P  V  G  Q  N  K  R  H  K  L  I  N  E  M  E  P  D  S  S  P  L  L  K  P  Q  T  R  G  T  L  H  A  G  E  D  A  K  A  K  S  H  M  A  Q  R  E  T  R  F  G  G  S  S  S  R  E  L  S  Q  Q  D  D  S  R  P  F  T  H  P  G  E  L  V  I  C  K  K  K  R  K  D  R  E  K  L  G  L  K  P  G  S  S  S  A  G  P  V  S  P  P  G  V  S  R  S  I  R  S  P  G  S  L  P  T  V  K  E  G  G  R  L  N  Q  Q  T  P  Q  Q  L  N  G  S  G  S  S  S  S  V  G  W  A  N  P  V  K  R  L  R  S  D  S  A  R  R  R  Q  S  H  L  *  L  L  F  C  *  R  C  T  L  *  C  K  *  *  L  Y  *  V  R  C  C  E  *  P  A  L  R  Y  F  H  T  S  *  P  V  Y  F  P  I  S  S  P  A  S  P  V  *  *  I  C  F  *  T  *  V  S  *  C  L  P  L  A  T  A  C  Q  *  *  F  S  P  S  P  </second_frame>
            <third_frame>   N  P  Q  G  K  V  G  I  I  S  S  *  M  P  A  G  L  I  V  E  G  L  R  C  L  R  S  F  K  E  S :   A  K  L  S  L  P  N  S  K  R  K  *  R  R  E  V  I  K  *  F  R  C  Y  T  V  C  G  K  E  L  V  V  L  V  A  W  V  G  Q  R  I  V  R  L  V  Y  R  Q  L  I  Y  A  L  M  S  L  S  T  A  E  C  S  N  L  C  L  M  C  S  *  C  *  N  V  Q  Y  S  T  S  V  S  H  M  R :   *  D  L  K  Q  G  K  C  M  I  F  S  L  T  S  *  R  *  N  F  R  R  L  I  F  E  K  Q  G  I  P  F  L  L  L  D  Q  Q  L  L  L  H  P  R  L  H  G  *  C  L  *  V  K  T  R  D  T  N  *  *  M  K  W  N  P  T  L  A  H  C  *  S  R  R  H  V  E  H  S  M  P  V  K  M  P  R  L  R  V  I  W  L  K  E  K  Q  D  L  V  V  A  V  A  G  S  L  A  N  R  M  I  H  A  H  S  L  I  P  G  S  L  L  F  A  K  R  K  E  K  I  E  R  S  W  V  *  N  P  G  V  V  L  L  V  L  S  H  H  L  V  S  A  A  V  S  E  V  L  A  H  S  Q  L  *  R  R  G  E  G  *  T  S  R  H  P  N  S  *  M  A  V  V  A  V  A  L  L  A  G  Q  T  L  *  R  D  *  D  Q  I  L  Q  E  D  G  K  V  I  Y  D  Y  C  F  V  K  G  V  H  C  N  A  S  S  S  C  T  E  *  G  A  V  N  N  R  P  F  G  I  F  I  P  P  D  L  C  T  S  P  F  H  P  Q  P  H  L  Y  D  K  F  A  F  K  H  R  F  L  N  V  Y  H  W  Q  L  L  V  S  D  N  S  L  L  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100188" stop="100096"/>
                    <exon start="99463" stop="99212"/>
                    <exon start="98919" stop="98293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPTRESWDNKLMNASGTYSGGTKMSEVIQRKCKTVVTKLQKKIEKGGHQIIPLLHGLWKRIGSSGCMGGSEDSPFGLQTIDLRVDESEYSGVLEFVSDVQLMLKRAVQYFGFSHEVRSEARKVHDLFFDILKIEFPETDFREARNSISFAGPAASTTPASSRLMPVGQNKRHKLINEMEPDSSPLLKPQTRGTLHAGEDAKAKSHMAQRETRFGGSSSRELSQQDDSRPFTHPGELVICKKKRKDREKLGLKPGSSSAGPVSPPGVSRSIRSPGSLPTVKEGGRLNQQTPQQLNGSGSSSSVGWANPVKRLRSDSARRRQSHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="101209" PGL_stop="100519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101209" e_stop="100727"/>
            <exon e_start="100635" e_stop="100519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="0.977"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="101209" e_stop="100727" e_length="483"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100726" i_stop="100636" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="100635" e_stop="100519" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101209" stop="100727"/>
              <exon start="100635" stop="100519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCCCTCAAAGAATGTCTTATTCAGTAGTGGTGTTGGTGTGGACTCCAGTGGATTAGCTCCTGAATCTGAGAAGAAAAGGGGGCGGCCTAAAGGTAAGAAGGTTCCTATTTACACAGAATTGGATGATGACAACGGTGAGTTCTCTGAAGCAAGTTCTGGGGAGAGGAATGGATATTCAGCCCATGAAGATGGTGAAATTGGGGAATTCGAAGATGATGAATTTAGTGGTGCAGTTGGTGTTACACCAGTTAACAAAGACCAGTCAGAAGAAGATGGTCCCAGTTTTGCTGATAGATATGAATACCACCAAGGTCCACAAGGTGCTATAAAGACTCGTGTACCCGATCAATTAGGTTCATCAGGATCATCTTCAGACAACCAAAGGCCGACACAGATAGTATCATCGTCTGTTTCATCTCAGCAGAAATTTGGATCTCTTTCTGCATTGGATGCCAGACCCAGTTCTCGGGCCAAAAGGATG : GCAGATGAATTAGAGGAAGGAGAAATTGCAGTATCTGGAGACTCACATGTGGATCTCCAGCAATCTGGTAGTTGGATCCAAGATCGTGATGAAGGTGAAGACGAACAGGTGTTGCAG</gDNA_template>
            <first_frame> K  P  S  K  N  V  L  F  S  S  G  V  G  V  D  S  S  G  L  A  P  E  S  E  K  K  R  G  R  P  K  G  K  K  V  P  I  Y  T  E  L  D  D  D  N  G  E  F  S  E  A  S  S  G  E  R  N  G  Y  S  A  H  E  D  G  E  I  G  E  F  E  D  D  E  F  S  G  A  V  G  V  T  P  V  N  K  D  Q  S  E  E  D  G  P  S  F  A  D  R  Y  E  Y  H  Q  G  P  Q  G  A  I  K  T  R  V  P  D  Q  L  G  S  S  G  S  S  S  D  N  Q  R  P  T  Q  I  V  S  S  S  V  S  S  Q  Q  K  F  G  S  L  S  A  L  D  A  R  P  S  S  R  A  K  R  M  :  A  D  E  L  E  E  G  E  I  A  V  S  G  D  S  H  V  D  L  Q  Q  S  G  S  W  I  Q  D  R  D  E  G  E  D  E  Q  V  L  Q </first_frame>
            <second_frame>  S  P  Q  R  M  S  Y  S  V  V  V  L  V  W  T  P  V  D  *  L  L  N  L  R  R  K  G  G  G  L  K  V  R  R  F  L  F  T  Q  N  W  M  M  T  T  V  S  S  L  K  Q  V  L  G  R  G  M  D  I  Q  P  M  K  M  V  K  L  G  N  S  K  M  M  N  L  V  V  Q  L  V  L  H  Q  L  T  K  T  S  Q  K  K  M  V  P  V  L  L  I  D  M  N  T  T  K  V  H  K  V  L  *  R  L  V  Y  P  I  N  *  V  H  Q  D  H  L  Q  T  T  K  G  R  H  R  *  Y  H  R  L  F  H  L  S  R  N  L  D  L  F  L  H  W  M  P  D  P  V  L  G  P  K  G  W :   Q  M  N  *  R  K  E  K  L  Q  Y  L  E  T  H  M  W  I  S  S  N  L  V  V  G  S  K  I  V  M  K  V  K  T  N  R  C  C   </second_frame>
            <third_frame>   A  L  K  E  C  L  I  Q  *  W  C  W  C  G  L  Q  W  I  S  S  *  I  *  E  E  K  G  A  A  *  R  *  E  G  S  Y  L  H  R  I  G  *  *  Q  R  *  V  L  *  S  K  F  W  G  E  E  W  I  F  S  P  *  R  W  *  N  W  G  I  R  R  *  *  I  *  W  C  S  W  C  Y  T  S  *  Q  R  P  V  R  R  R  W  S  Q  F  C  *  *  I  *  I  P  P  R  S  T  R  C  Y  K  D  S  C  T  R  S  I  R  F  I  R  I  I  F  R  Q  P  K  A  D  T  D  S  I  I  V  C  F  I  S  A  E  I  W  I  S  F  C  I  G  C  Q  T  Q  F  S  G  Q  K  D   : G  R  *  I  R  G  R  R  N  C  S  I  W  R  L  T  C  G  S  P  A  I  W  *  L  D  P  R  S  *  *  R  *  R  R  T  G  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0034P21.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101209" stop="100727"/>
                    <exon start="100635" stop="100519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPSKNVLFSSGVGVDSSGLAPESEKKRGRPKGKKVPIYTELDDDNGEFSEASSGERNGYSAHEDGEIGEFEDDEFSGAVGVTPVNKDQSEEDGPSFADRYEYHQGPQGAIKTRVPDQLGSSGSSSDNQRPTQIVSSSVSSQQKFGSLSALDARPSSRAKRMADELEEGEIAVSGDSHVDLQQSGSWIQDRDEGEDEQVLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 45944 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2187 bytes was the average size of a spliced alignment
$ 27264 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1514 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:29:56
-->
