<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:29:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201934" ref_strand="+" ref_description="SGN-E201934 [cLEC-7-I13]">
      <seq>atttacaaaggtagagtccacttgcgcctctgtttcgatggtggatatcatgtgatggacgaagcagcacatgtttgtagtgattaccgtccaactgcaaggcaactatggaaagcaccaattgggactgtcgaattagggataattggatgtaagaatctgttgcccatgaaaggcaaagggtctacggatgcttatgcagttgccaaatatggtaacaagtgggtacgcactcgtaccatatctgatagtttagaacctaggtggaatgagcagtacacttggagagtttatgatccatccactgtgttgactatcggagtatttgatggctgctcggaagtagcatttgaatcagatgagtgcatgaggccagattttcggattggtaaggtgcgtgtccgtatttctacattgacaacaggtaaagtgtacaggaatactctcccattacttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="19902" stop="20962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20202" g_stop="20662" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E201934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20202" e_stop="20662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTT</genome_strand>
        <mrna_strand>ATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTCTCCCATTACTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311683" ref_strand="+" ref_description="SGN-E311683 [cLEZ-9-B24]">
      <seq>ttttttttttttttaggagcaattcataacatacgtctctcttcataaataagtatcgagtacatgtacaaaaactatctatatttgttcggactcttcagaaatgtcgccaagtttattgggttttccattagtgaagttttggaggatcccacatgggtgcaacaataacttcaaagagtttgagcatcataagaagctaaatagatatcacttgtcgaacccctattcagctttctagggaggacaatggcggtgtctctgaatttatccaagttgacgacatgtataaatgtctctcacctttgacaacatcgccagaggtatacgattcgagttctttcatgtcttcctctgtcaattttacagataaggatcctacgttttcgttgaagtttccaatcttcgtagtgcctggtatagggcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="26060" stop="27079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26349" g_stop="26779" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E311683" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26349" e_stop="26779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAAATAATTTAGGAGCAATTCATAACATACGTCTCTCTTCATAAATAAGTATCGAGTACATGTACAAAAACTATCTATATTTGTTCGGACTCTTCAGAAATGTCGCCAAGTTTATTGGGTTTTCCATTAGTGAAGTTTTGGAGGATCCCACATGGGTGCAACAATAACTTCAAAGAGTTTGAGCATCATAAGAAGCTAAATAGATATCACTTGTCGAACCCCTATTCAGCTTTCTAGGGAGGACAATGGCGGTGTCTCTGAATTTATCCAAGTTGACGACATGTATAAATGTCTCTCACCTTTGACAACATCGCCAGAGGTATACGATTCGAGTTCTTTCATGTCTTCCTCTGTCAATTTTACAGATAAGGATCCTACGTTTTCGTTGAAGTTTCCAATCTTCGTAGTGCCTGGTATAGGGCATACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTAGGAGCAATTCATAACATACGTCTCTCTTCATAAATAAGTATCGAGTACATGTACAAAAACTATCTATATTTGTTCGGACTCTTCAGAAATGTCGCCAAGTTTATTGGGTTTTCCATTAGTGAAGTTTTGGAGGATCCCACATGGGTGCAACAATAACTTCAAAGAGTTTGAGCATCATAAGAAGCTAAATAGATATCACTTGTCGAACCCCTATTCAGCTTTCTAGGGAGGACAATGGCGGTGTCTCTGAATTTATCCAAGTTGACGACATGTATAAATGTCTCTCACCTTTGACAACATCGCCAGAGGTATACGATTCGAGTTCTTTCATGTCTTCCTCTGTCAATTTTACAGATAAGGATCCTACGTTTTCGTTGAAGTTTCCAATCTTCGTAGTGCCTGGTATAGGGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422251" ref_strand="-" ref_description="SGN-E422251 [STM-40-K21]">
      <seq>aggggcaaagttgattgaaagcttgcctgatggtgactttcgcaagaatttccctaggttcaagccagagaattttgagcataacaagcaagtatttgagaaaatcaatctaatggctgcaaggaaaggatgcactccttcacaattagcattggcatggattcttcaccaaggagatgatgtatgccctataccaggcactacgaagattgaaaacttcaacgaaaacgtaggagccttatctgtaaaattgacagtggaagacatgaaagaactcgaatcgtatacctctggtgatgttgtcaaaggtgagagacatgtatacatgtcgtcaacttggataaattcagagacaccgccattgtcctccctagaaagctgaataggggtttgacaagtgatatctatttggcttcttatgatgctcaaactgtccgaagatattgttgcacctatgtcggatcttccaaaaatgcactatggaaaaacatggtaatatttttgaagactccgaacaacatagatgacttttgtaatgtacttgtacttatgaagcgagatgtatgttatggattgctcctaaattatttagtactgacttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="74507" stop="26053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28113" g_stop="28068" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26913" g_stop="26353" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="591" r_length="545" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="632"/>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E422251" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422251" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28113" e_stop="28068"/>
          <exon e_start="26913" e_stop="26353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAGGTTAGACCACATAAATCAAAACTGTGACTGCTTATGTGTTCTCTATTTTATAGATATGTATGTTGCGAATTTGCAGCGCGCACCAACTTGATGTTTTTAGTTGCATTTGAATTTAGTATCTTGTTATCTCTTTGTGCATTAATGTTTTACAGAGATTCTCAGAATACTCTGTAAGGTAAAGCCTTTGCCAAATCATGCTCATAAATGCCTTTTCCTCAGAACCCCTTTTGACTATGGTGATTGATGATCATGATCTGTTCTGGATACATAAAATGCAGAATAATAGGAAAATTTTCAAGGACATTTCTATTGACAGCTTCTCTAGGAATAGCTTAATGAAATATGTAAGTCCTTATTGTAACCCTTCTTGTAATCTGGAAATTCTACTGGTTCTGTCTGACACTAACTAAGCATGGAGTGATCTGGTTTTACCAAGCATGCAGTAATTTGACCAGCTGCTAAGATGGATATGTGATCATATAATATTAAATAAAATAAAAAATGATCCATATTCGCTAGAAGTGCTAGTAGCATTGAGAATGAAACAAGAGAAGTGCGCTTGAGATGGTTTGACATGTCTTGTGTCGACCTACGGATGCACCAGTTTGTAGTTGTGAAACTATAGCCAGTGGAGGTGTTGAAAAGGAGGCGAGGTAGAATCTTGAAATACTTACAAATTGCTAAGGATAAATGCGTACTTAGCAAAAAATATGGCACAGTAGAAGATAAAGAACCATATATAGGTGATATCTTGCTGTGGAGACTAGGATTTAGTCTTTCTTTTAAGAACTTCTAATATCGTCTTATATGTTTAACTTATATTTTGCTTTTATTTTATCTGATATGATGATGAAGTGAGTTGAATTTAAGTGGAGAAGTGAAAACTTTATGTAGTCGATTCCAACTTATTTGTAATTGAGGCATAGTTAGAATTGCAGTTATTATTCCAGGTTCAGGAAAAAATATCCTAAACTTCCAACTCACCCTTTCATCGATGCATCTGTTGACTGATTTAACGCACCATCTATCAAGATAAACATTTTGGCACAACCTTTTTGGTCCGTGAAATATATAGCTAGTGTAATTGTTGCACGAATGTATCTTTGTATTTTAACTGCGACATTAATTTATTATTTTGTTGGTTTGCTTTGTAGAATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGAATTGCTCCTAAATTATTTA</genome_strand>
        <mrna_strand>AGGGGCAAAGTTGATTGAAAGCTTGCCTGATGGTGACTTTCGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGAGAAAATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGAAAACTTCAACGAAAACGTAGGAGCCTTATCTGTAAAATTGACAGTGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGTGATGTTGTCAAAGGTGAGAGACATGTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTTGACAAGTGATATCTATTTGGCTTCTTATGATGCTCAAACTGTCCGAAGATATTGTTGCACCTATGTCGGATCTTCCAAAAATGCACT-ATGG-------AA-AAACATGGTAATATTTTTGAAGACTCCGAAC-AACATAGATGACTTTTGTA-ATGTACTTG-TAC----TTATGAAGCGAGATGTATGTTATGGATTGCTCCTAAATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711431" ref_strand="+" ref_description="SGN-E711431 [FB02AA02]">
      <seq>cccgtgatggtcccctatagtcctctcggacgaggattcttaccatcaggggcaaagctgatcgaaagcttggctgatgatgactttcgcaagaatttccctaggttcaagccagagaattttgagcataacaagcaagtatttgtgaatatcaatctaatggctgcaaggaaaggatgcactccttcacaattagcattggcatggattcttcaccaaggagatgatgtatgccctataccaggcactacgaagattggaaacttcaacgaaaacgtaggatccttatctgtaaaattgacagaggaagacatgaaagaactcgaatcgtatacctctggcgatgttgtcaaaggtgagagacatttatacatgtcgtcaacttggataaattcagagacaccgccattgtcctccctagaaagctgaataggggttcgacaagtgatatctatttagcttcttatgatgctcaaactctttgaagttattgttgcacccatgtgggatcctccaaaacttcactaatggaaaacccaataaacttggcgacatttctgaagagtccgaacaaatatagatagtttttgtacatgtactcgatacttatttatgaagagagacgtatgttatgannnanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="75749" stop="26072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28253" g_stop="28250" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28249" i_stop="28157" i_length="93">
            <donor d_prob="0.405" d_score="0.00"/>
            <acceptor a_prob="0.149" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28156" g_stop="28068" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="93" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26913" g_stop="26372" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="635" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="656"/>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E711431" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28253" e_stop="28250"/>
          <exon e_start="28156" e_stop="28068"/>
          <exon e_start="26913" e_stop="26372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTGACAGATATCTTAGGTCAACCCCCTTGCATCAAATTACTAGCAAATGAGTGTTTGTTCTGATACTTGTCATTTTCGGAGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAGGTTAGACCACATAAATCAAAACTGTGACTGCTTATGTGTTCTCTATTTTATAGATATGTATGTTGCGAATTTGCAGCGCGCACCAACTTGATGTTTTTAGTTGCATTTGAATTTAGTATCTTGTTATCTCTTTGTGCATTAATGTTTTACAGAGATTCTCAGAATACTCTGTAAGGTAAAGCCTTTGCCAAATCATGCTCATAAATGCCTTTTCCTCAGAACCCCTTTTGACTATGGTGATTGATGATCATGATCTGTTCTGGATACATAAAATGCAGAATAATAGGAAAATTTTCAAGGACATTTCTATTGACAGCTTCTCTAGGAATAGCTTAATGAAATATGTAAGTCCTTATTGTAACCCTTCTTGTAATCTGGAAATTCTACTGGTTCTGTCTGACACTAACTAAGCATGGAGTGATCTGGTTTTACCAAGCATGCAGTAATTTGACCAGCTGCTAAGATGGATATGTGATCATATAATATTAAATAAAATAAAAAATGATCCATATTCGCTAGAAGTGCTAGTAGCATTGAGAATGAAACAAGAGAAGTGCGCTTGAGATGGTTTGACATGTCTTGTGTCGACCTACGGATGCACCAGTTTGTAGTTGTGAAACTATAGCCAGTGGAGGTGTTGAAAAGGAGGCGAGGTAGAATCTTGAAATACTTACAAATTGCTAAGGATAAATGCGTACTTAGCAAAAAATATGGCACAGTAGAAGATAAAGAACCATATATAGGTGATATCTTGCTGTGGAGACTAGGATTTAGTCTTTCTTTTAAGAACTTCTAATATCGTCTTATATGTTTAACTTATATTTTGCTTTTATTTTATCTGATATGATGATGAAGTGAGTTGAATTTAAGTGGAGAAGTGAAAACTTTATGTAGTCGATTCCAACTTATTTGTAATTGAGGCATAGTTAGAATTGCAGTTATTATTCCAGGTTCAGGAAAAAATATCCTAAACTTCCAACTCACCCTTTCATCGATGCATCTGTTGACTGATTTAACGCACCATCTATCAAGATAAACATTTTGGCACAACCTTTTTGGTCCGTGAAATATATAGCTAGTGTAATTGTTGCACGAATGTATCTTTGTATTTTAACTGCGACATTAATTTATTATTTTGTTGGTTTGCTTTGTAGAATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGA</genome_strand>
        <mrna_strand>CCCG.............................................................................................TGATGGTCCCCTATAGTCCTCTCGGACGAGGATTCTTACCATCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691626" ref_strand="+" ref_description="SGN-E691626 [LH_Ea06J16]">
      <seq>ggcccttttactaatgaaatactcatcggcaaggctattaaaggaataagagagaaagcacaaatagctaccaagtttggtatccgttttgaagatggaaatatgggcatttggggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagactggatatccactgcattgatctctattatgtacatcgcatcgatactcagttgccaattgaagtcacgatgggagaactgaagaaacttgttgaagagggcaaaataaaatatataggactatcagaggcttgtgcatcaacaatcagaagggcccatgctgtgcatccaataacagctgttcagatggaatggtctttgtggactaaagatctggaggaagaaatagttcctacttgcatagaacttggcatagggattgtcccctatagtcctcttggacgaggattcttctcatcagggacaaaactgatcgaaagcttgcctgatgatgactttcgcaagaatttccctacgttcaagccagagaattttgagcataacaagcaagtatttgtgaatatcaatcttatggctgcaaggaaaggatgcactccttcacaattagcattggcatggattcttcaccaaggagatgatgtatgccctataccaggcactacgaagattggaaacttcaacgaaaacgtaggatccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29784" stop="26417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29484" g_stop="29452" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="231" r_length="198" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28250" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="404" r_length="173" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79">
            <donor d_prob="0.405" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28170" g_stop="28068" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="507" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26913" g_stop="26717" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="704" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E691626" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29484" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28250"/>
          <exon e_start="28170" e_stop="28068"/>
          <exon e_start="26913" e_stop="26717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGA-GGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAGGTGACAGATATCTTAGGTCAACCCCCTTGCATCAAATTACTAGCAAATGAGTGTTTGTTCTGATACTTGTCATTTTCGGAGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAGGTTAGACCACATAAATCAAAACTGTGACTGCTTATGTGTTCTCTATTTTATAGATATGTATGTTGCGAATTTGCAGCGCGCACCAACTTGATGTTTTTAGTTGCATTTGAATTTAGTATCTTGTTATCTCTTTGTGCATTAATGTTTTACAGAGATTCTCAGAATACTCTGTAAGGTAAAGCCTTTGCCAAATCATGCTCATAAATGCCTTTTCCTCAGAACCCCTTTTGACTATGGTGATTGATGATCATGATCTGTTCTGGATACATAAAATGCAGAATAATAGGAAAATTTTCAAGGACATTTCTATTGACAGCTTCTCTAGGAATAGCTTAATGAAATATGTAAGTCCTTATTGTAACCCTTCTTGTAATCTGGAAATTCTACTGGTTCTGTCTGACACTAACTAAGCATGGAGTGATCTGGTTTTACCAAGCATGCAGTAATTTGACCAGCTGCTAAGATGGATATGTGATCATATAATATTAAATAAAATAAAAAATGATCCATATTCGCTAGAAGTGCTAGTAGCATTGAGAATGAAACAAGAGAAGTGCGCTTGAGATGGTTTGACATGTCTTGTGTCGACCTACGGATGCACCAGTTTGTAGTTGTGAAACTATAGCCAGTGGAGGTGTTGAAAAGGAGGCGAGGTAGAATCTTGAAATACTTACAAATTGCTAAGGATAAATGCGTACTTAGCAAAAAATATGGCACAGTAGAAGATAAAGAACCATATATAGGTGATATCTTGCTGTGGAGACTAGGATTTAGTCTTTCTTTTAAGAACTTCTAATATCGTCTTATATGTTTAACTTATATTTTGCTTTTATTTTATCTGATATGATGATGAAGTGAGTTGAATTTAAGTGGAGAAGTGAAAACTTTATGTAGTCGATTCCAACTTATTTGTAATTGAGGCATAGTTAGAATTGCAGTTATTATTCCAGGTTCAGGAAAAAATATCCTAAACTTCCAACTCACCCTTTCATCGATGCATCTGTTGACTGATTTAACGCACCATCTATCAAGATAAACATTTTGGCACAACCTTTTTGGTCCGTGAAATATATAGCTAGTGTAATTGTTGCACGAATGTATCTTTGTATTTTAACTGCGACATTAATTTATTATTTTGTTGGTTTGCTTTGTAGAATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATC</genome_strand>
        <mrna_strand>GGCCCTTTTACTAATGAAATACTCATCGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGCACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATATGGGCATTTGGGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTGGATATCCACTGCATTGATCTCTATTATGTACATCGCATCGATACTCAGTTGCCAATTGAAGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTGAAGAAACTTGTTGAAGAGGGCAAAATAAAATATATAGGACTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTGCATCCAATAACAGCTGTTCAGATGGAATGGTCTTTGTGGACTAAAGATCTGGAGGAAGAAATAGTTCCTACTTGCAT...............................................................................AGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTTGGACGAGGATTCTTCTCATCAGGGACAAAACTGATCGAAAGCTTGCCTGATGATGACTTTCGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCCCTACGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTTATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422250" ref_strand="+" ref_description="SGN-E422250 [STM-40-K21]">
      <seq>agaaaatggaaggaacgacgccattcgacgtaccgatgataaagctaggttcacaaggtctagatgtatccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgccgaagcccgagcccgaaatgatcaagctacttcatcacgctattgatactggagtgaccttactcgatacttctgatgtctatgggcctcttactaatgaaatcctcattggcaaggctattaaaggaataagagagagtacaaatagctaccaagtttggtatacgttttgaagatggaaataggggcatttgtggtgaacctgcatatgtaagggcttgttgtgaggccagcttgaagagactggatatcgactgcattgatctgtattatgttcatcgcatcgatactcagttgccaattgacgtcacgatgggagaactgaagaaactcgttgaagagggtaaaataaaatacataggtctatcagaggcttgtgcatcaacaatcagaagggcccatgctgttcatccaataacagctgttcagatggaatggtctttgtggactagagatctggaggaagaagtagttcctacttgcagagaacttggcatagggattgtaccttatagtcctcttggacgaggatacttctcagcaggggcaaangtgattgaaagcttgcctgatggtgactttcgcaagaatttccctanggttcagccagagaattttgagcataacnagcaagtatttgagaaatcaatctaatggctgcaaggaaaggatgcactcctttcacattagcattggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29984" stop="26502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29684" g_stop="29452" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="429" r_length="196" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.530" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28250" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="602" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79">
            <donor d_prob="0.405" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28170" g_stop="28068" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="705" r_length="103" r_score="0.903"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26913" g_stop="26802" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="816" r_length="111" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E422250" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29684" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28250"/>
          <exon e_start="28170" e_stop="28068"/>
          <exon e_start="26913" e_stop="26802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGA-GGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAGGTGACAGATATCTTAGGTCAACCCCCTTGCATCAAATTACTAGCAAATGAGTGTTTGTTCTGATACTTGTCATTTTCGGAGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAGGTTAGACCACATAAATCAAAACTGTGACTGCTTATGTGTTCTCTATTTTATAGATATGTATGTTGCGAATTTGCAGCGCGCACCAACTTGATGTTTTTAGTTGCATTTGAATTTAGTATCTTGTTATCTCTTTGTGCATTAATGTTTTACAGAGATTCTCAGAATACTCTGTAAGGTAAAGCCTTTGCCAAATCATGCTCATAAATGCCTTTTCCTCAGAACCCCTTTTGACTATGGTGATTGATGATCATGATCTGTTCTGGATACATAAAATGCAGAATAATAGGAAAATTTTCAAGGACATTTCTATTGACAGCTTCTCTAGGAATAGCTTAATGAAATATGTAAGTCCTTATTGTAACCCTTCTTGTAATCTGGAAATTCTACTGGTTCTGTCTGACACTAACTAAGCATGGAGTGATCTGGTTTTACCAAGCATGCAGTAATTTGACCAGCTGCTAAGATGGATATGTGATCATATAATATTAAATAAAATAAAAAATGATCCATATTCGCTAGAAGTGCTAGTAGCATTGAGAATGAAACAAGAGAAGTGCGCTTGAGATGGTTTGACATGTCTTGTGTCGACCTACGGATGCACCAGTTTGTAGTTGTGAAACTATAGCCAGTGGAGGTGTTGAAAAGGAGGCGAGGTAGAATCTTGAAATACTTACAAATTGCTAAGGATAAATGCGTACTTAGCAAAAAATATGGCACAGTAGAAGATAAAGAACCATATATAGGTGATATCTTGCTGTGGAGACTAGGATTTAGTCTTTCTTTTAAGAACTTCTAATATCGTCTTATATGTTTAACTTATATTTTGCTTTTATTTTATCTGATATGATGATGAAGTGAGTTGAATTTAAGTGGAGAAGTGAAAACTTTATGTAGTCGATTCCAACTTATTTGTAATTGAGGCATAGTTAGAATTGCAGTTATTATTCCAGGTTCAGGAAAAAATATCCTAAACTTCCAACTCACCCTTTCATCGATGCATCTGTTGACTGATTTAACGCACCATCTATCAAGATAAACATTTTGGCACAACCTTTTTGGTCCGTGAAATATATAGCTAGTGTAATTGTTGCACGAATGTATCTTTGTATTTTAACTGCGACATTAATTTATTATTTTGTTGGTTTGCTTTGTAGAATTTCCCTA-GGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCAT</genome_strand>
        <mrna_strand>AGAAAATGGAAGGAACGACGCCATTCGACGTACCGATGATAAAGCTAGGTTCACAAGGTCTAGATGTATCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCGAAGCCCGAGCCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTGACCTTACTCGATACTTCTGATGTCTATGGGCCTCTTACTAATGAAATCCTCATTGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAG--AGTACAAATAGCTACCAAGTTTGGTATACGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCATATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTGGATATCGACTGCATTGATCTGTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGACGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTGAAGAAACTCGTTGAAGAGGGTAAAATAAAATACATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTTCAGATGGAATGGTCTTTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAG...............................................................................AGAACTTGGCATAGGGATTGTACCTTATAGTCCTCTTGGACGAGGATACTTCTCAGCAGGGGCAAANGTGATTGAAAGCTTGCCTGATGGTGACTTTCGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCCCTANGGTTC-AGCCAGAGAATTTTGAGCATAACNAGCAAGTATTTGAGAA-ATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTTCACATTAGCATTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573517" ref_strand="+" ref_description="SGN-E573517 [32840]">
      <seq>agaaaatggaagaaacgacaccgttcgacataccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgccgaagcccgagcccgaaatgatcaagttacttcatcacgctattgatactggagtgaccttactcgatacttctgatgtctatgggcctcttactaatgaaatcctcattgacaaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatacgttttgaagatggaaataggggcatttgtggtgaacctgcatatgtaagggcttgttgtgaggccagcttgaagagactggatatcgactgcattgatctgtattatgttcatcgcattgatactcagttgccaattgaagtcacgatgggagaactgaagaaactcgttgaagagggtaaaataaaatatataggtctatcagaggcttgtgcatcaacaatcagaagggcccatgctgttcatccaataacagctgttcagatggaatggtctttgtggactagagatctggaggaagaagtagttcctacttgcagagaacttggcatagggattgtaccttatagtcctcttggacggggattcttctcagcaggggcaaagttgattgaaagcttgcctgatggtgactttcgcaagaatttccctaggttcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29984" stop="26594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29684" g_stop="29452" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="431" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.530" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28250" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="604" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79">
            <donor d_prob="0.405" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28170" g_stop="28068" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="707" r_length="103" r_score="0.913"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26913" g_stop="26894" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="727" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E573517" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29684" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28250"/>
          <exon e_start="28170" e_stop="28068"/>
          <exon e_start="26913" e_stop="26894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGA-GGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAGGTGACAGATATCTTAGGTCAACCCCCTTGCATCAAATTACTAGCAAATGAGTGTTTGTTCTGATACTTGTCATTTTCGGAGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAGGTTAGACCACATAAATCAAAACTGTGACTGCTTATGTGTTCTCTATTTTATAGATATGTATGTTGCGAATTTGCAGCGCGCACCAACTTGATGTTTTTAGTTGCATTTGAATTTAGTATCTTGTTATCTCTTTGTGCATTAATGTTTTACAGAGATTCTCAGAATACTCTGTAAGGTAAAGCCTTTGCCAAATCATGCTCATAAATGCCTTTTCCTCAGAACCCCTTTTGACTATGGTGATTGATGATCATGATCTGTTCTGGATACATAAAATGCAGAATAATAGGAAAATTTTCAAGGACATTTCTATTGACAGCTTCTCTAGGAATAGCTTAATGAAATATGTAAGTCCTTATTGTAACCCTTCTTGTAATCTGGAAATTCTACTGGTTCTGTCTGACACTAACTAAGCATGGAGTGATCTGGTTTTACCAAGCATGCAGTAATTTGACCAGCTGCTAAGATGGATATGTGATCATATAATATTAAATAAAATAAAAAATGATCCATATTCGCTAGAAGTGCTAGTAGCATTGAGAATGAAACAAGAGAAGTGCGCTTGAGATGGTTTGACATGTCTTGTGTCGACCTACGGATGCACCAGTTTGTAGTTGTGAAACTATAGCCAGTGGAGGTGTTGAAAAGGAGGCGAGGTAGAATCTTGAAATACTTACAAATTGCTAAGGATAAATGCGTACTTAGCAAAAAATATGGCACAGTAGAAGATAAAGAACCATATATAGGTGATATCTTGCTGTGGAGACTAGGATTTAGTCTTTCTTTTAAGAACTTCTAATATCGTCTTATATGTTTAACTTATATTTTGCTTTTATTTTATCTGATATGATGATGAAGTGAGTTGAATTTAAGTGGAGAAGTGAAAACTTTATGTAGTCGATTCCAACTTATTTGTAATTGAGGCATAGTTAGAATTGCAGTTATTATTCCAGGTTCAGGAAAAAATATCCTAAACTTCCAACTCACCCTTTCATCGATGCATCTGTTGACTGATTTAACGCACCATCTATCAAGATAAACATTTTGGCACAACCTTTTTGGTCCGTGAAATATATAGCTAGTGTAATTGTTGCACGAATGTATCTTTGTATTTTAACTGCGACATTAATTTATTATTTTGTTGGTTTGCTTTGTAGAATTTCCCTAGGTTCAAGCC</genome_strand>
        <mrna_strand>AGAAAATGGAAGAAACGACACCGTTCGACATACCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCGAAGCCCGAGCCCGAAATGATCAAGTTACTTCATCACGCTATTGATACTGGAGTGACCTTACTCGATACTTCTGATGTCTATGGGCCTCTTACTAATGAAATCCTCATTGACAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATACGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCATATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTGGATATCGACTGCATTGATCTGTATTATGTTCATCGCATTGATACTCAGTTGCCAATTGAAGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTGAAGAAACTCGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTTCAGATGGAATGGTCTTTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAG...............................................................................AGAACTTGGCATAGGGATTGTACCTTATAGTCCTCTTGGACGGGGATTCTTCTCAGCAGGGGCAAAGTTGATTGAAAGCTTGCCTGATGGTGACTTTCGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCCCTAGGTTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450103" ref_strand="+" ref_description="SGN-E450103 [cSTS-8-K12]">
      <seq>gaaaatggaagagacgacaccgttcgacataccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgccgaagcccgagcccgaaatgatcaagttacttcatcacgctattgatactggagtgaccttactcgatacttctgatgtctatgggcctcttactaatgaaatcctcattggcaaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatacgttttgaagatggaaataggggcatttgtggtgaacctgcatatgtaagggcttgttgtgaggccagcttgaagagactggatatcgactgcattgatctgtattatgttcatcgcatcgatactcagttgccaattgaagtcacgatgggagaactgaagaaactcgttgaagagggtaaaataaaatatataggtctatcagaggcttgtgcatcaacaatcagaagggcccatgctgttcatccaataacagctgttcagatggaatggtctttgtggactagagatctggaggaagaagtagttcctacttgcagagaacttggcatagggattgtaccttatagtcctcttggacgaggattcttctcagcaggggcaaagttgattgaaagcttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29983" stop="27785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29683" g_stop="29452" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="430" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.530" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28250" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="603" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79">
            <donor d_prob="0.405" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28170" g_stop="28085" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="689" r_length="86" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E450103" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29683" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28250"/>
          <exon e_start="28170" e_stop="28085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGA-GGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAGGTGACAGATATCTTAGGTCAACCCCCTTGCATCAAATTACTAGCAAATGAGTGTTTGTTCTGATACTTGTCATTTTCGGAGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTG</genome_strand>
        <mrna_strand>GAAAATGGAAGAGACGACACCGTTCGACATACCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCGAAGCCCGAGCCCGAAATGATCAAGTTACTTCATCACGCTATTGATACTGGAGTGACCTTACTCGATACTTCTGATGTCTATGGGCCTCTTACTAATGAAATCCTCATTGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATACGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCATATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTGGATATCGACTGCATTGATCTGTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTGAAGAAACTCGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTTCAGATGGAATGGTCTTTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAG...............................................................................AGAACTTGGCATAGGGATTGTACCTTATAGTCCTCTTGGACGAGGATTCTTCTCAGCAGGGGCAAAGTTGATTGAAAGCTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448039" ref_strand="+" ref_description="SGN-E448039 [cSTS-1-F17]">
      <seq>agaaaatggaaggaacgacgccattcgacgtaccgatgataaagctaggttcacaaggtctagatgtatccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgccgaagcccgagcccgaaatgatcaagctacttcatcacgctattgatactggagtgaccttactcgatacttctgatgtctatgggcctcttactaatgaaatcctcattggcaaggctattaaaggaataagagagagtacaaatagctaccaagtttggtatacgttttgaagatggaaataggggcatttgtggtgaacctgcatatgtaagggcttgttgtgaggccagcttgaagagactggatatcgactgcattgatctgtattatgttcatcgcatcgatactcagttgccaattgacgtcacgatgggagaactgaagaaactcgttgaagagggtaaaataaaatacataggtctatcagaggcttgtgcatcaacaatcagaagggcccatgctgttcatccaataacagctgttcagatggaatggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29984" stop="27992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29684" g_stop="29452" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="429" r_length="196" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.530" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28292" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="560" r_length="131" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E448039" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29684" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGA-GGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATT</genome_strand>
        <mrna_strand>AGAAAATGGAAGGAACGACGCCATTCGACGTACCGATGATAAAGCTAGGTTCACAAGGTCTAGATGTATCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCGAAGCCCGAGCCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTGACCTTACTCGATACTTCTGATGTCTATGGGCCTCTTACTAATGAAATCCTCATTGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAG--AGTACAAATAGCTACCAAGTTTGGTATACGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCATATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTGGATATCGACTGCATTGATCTGTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGACGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTGAAGAAACTCGTTGAAGAGGGTAAAATAAAATACATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTTCAGATGGAATGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367505" ref_strand="+" ref_description="SGN-E367505 [cLPT-7-C16]">
      <seq>gcgttcgacccgagggtgaagctagggtcacatggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggccctcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatcggcaaggctattaaagggataagagagagagtgcaaatagctaccaagtttggtatacgttttgaagatggaaacaggggcatttgtggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagacttgatatcgactgcattgatctctattatgttcatcgcatcgatactcagttgccaattgaagtcacgatgggagaactaaaaaaactcgttgaagagggcaaaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29956" stop="28081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29664" g_stop="29452" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="408" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28421" g_stop="28392" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="438" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E367505" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29664" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
          <exon e_start="28421" e_stop="28392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTCAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTGAAGAAACTCGTTGAAGAG</genome_strand>
        <mrna_strand>GCGTTCGAC---CCGAGGGTGAAGCTAGGGTCACATGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCTCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGGATAAGAGAGAGAGTGCAAATAGCTACCAAGTTTGGTATACGTTTTGAAGATGGAAACAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTAAAAAAACTCGTTGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452531" ref_strand="+" ref_description="SGN-E452531 [cSTS-17-K5]">
      <seq>gctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgccgaagcccgagcccgaaatgatcaagttacttcatcacgctattgatactggagtgaccttactcgatacttctgatgtctatgggcctcttactaatgaaatcctcattggtaaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatacgttttgaagatggaaataggggcatttgtggtgaacctgcatatgtaagggcttgttgtgaggccagcttgaagagactggatatcgactgcattgatctgtattatgttcatcgcatcgatactcagttgccaattgaagtcacggtttgacatctttgctccaaatttctatttttgtagtgtacttcatcactcttaagttttaaaaagtagttgcgttatatgatttgcgtggctaatcaggtaaatcctatttcattgatcatagcctcctatagagtcaattttttcccaagttagttatccaaaagtactacttgtacttggtttgattggtatatcagtccatgttttatgcgacacaccttgntaagtctatgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="77234" stop="28503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29641" g_stop="29452" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="28805" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="597" r_length="407" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E452531" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29641" e_stop="29452"/>
          <exon e_start="29208" e_stop="28805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAG---CCTATAGAGTCAATTTTTTTCCAAGTT-GTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTT</genome_strand>
        <mrna_strand>GCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCGAAGCCCGAGCCCGAAATGATCAAGTTACTTCATCACGCTATTGATACTGGAGTGACCTTACTCGATACTTCTGATGTCTATGGGCCTCTTACTAATGAAATCCTCATTGGTAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATACGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCATATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTGGATATCGACTGCATTGATCTGTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGTAGTGTACTTCATCACTC-TTAAGTTTTAAAAAGTAGTTGCGTTATATGATTTGCGTGGCTAATCAGGTAAATCCTATTTCATTGATCATAGCCTCCTATAGAGTCAATTTTTTCCCAAGTTAGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335970" ref_strand="+" ref_description="SGN-E335970 [cTOE-6-D23]">
      <seq>agaaaatggaagtaacgacgccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatcggcaaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatccgttttgaagatggaaataggggcatttgtggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagacttgatatcgactgcattgatctctattatgttcatcgcatcgatactcagttgccaattgaagtcacgatgggagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29984" stop="28700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29684" g_stop="29452" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29208" g_stop="29011" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="431" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E335970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29684" e_stop="29452"/>
          <exon e_start="29208" e_stop="29011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG</genome_strand>
        <mrna_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337251" ref_strand="+" ref_description="SGN-E337251 [cTOE-7-K18]">
      <seq>gaggaagtaaccgaccgcccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="29977" stop="29158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29683" g_stop="29458" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E337251" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29683" e_stop="29458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATC</genome_strand>
        <mrna_strand>GAGGAAGTAACCGACCGC-CCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="33657" stop="32707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33357" g_stop="33006" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33357" e_stop="33006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAGGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTA-TTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439930" ref_strand="+" ref_description="SGN-E439930 [cSTA-14-M1]">
      <seq>tttgcattgtatctgagacatggttgtggtaagaggatgatgtactattttcgagagtcgtatcgcgcgccgcgatggatattatatttcgagggacgtatcgcgcgccgcgaaggttactattttatcgagggtcgtgtcgtgcaccgcgacagatgcatggatacatatgtcccccatgggtcccagactgagagacagcgggtgtgtatcgttaagaaagacatgcatcacgatatttgacattgcatctcatggcattgcacatttttattattgatgaacttgaacatgtgtttttgctgatcttgtgattgtttctctgtgaagcttgtgactgttgaatattgagttgttattgagaatgtgtaaactgatagagcgtggttattgattggtgttcttggtaaactgttaggctgtagcgtggaggtttagatagggcgtaaggagtacccgtattcttttcacttaacttgtgtttagaggtttgcttgttgggtaccgcgtggtttggtactcaccccttgcttttataattttttgtaggttacgagcccgaatttttgtgatatcttccattctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="80921" stop="37609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38489" g_stop="37908" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E439930" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38489" e_stop="37908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCATTGTATCTGAGACATGATTGTGGTATAAGGATG-TAT-C-AT-TTCGAGGATCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTA--TTATCGAGGGTCATGTCGTGCGCCGCGACAGATGTATGGACAGATATGTCCCCCATGGATCCCGGACTGATAGACAGCGGGTGTGTATCGTTAAGAAAGACATGCATCACGATATTTGACATTGCATCTCATGGTATTGCACATTTTTATTATTGATGAACTTGAACATGT-ATTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAACTGATAGAGTGTGGTTATTGAGTGGTGTGTTTGGTAAACTGTTAGGATGTAGCGTGGAGGTTTAGATA-GGCGTAAGGAGTACCCATATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTCTACAAATTTTTGTAGGTTACGAGCCCGGATTTTTGTGATACCTTCCATTCTCTTCA</genome_strand>
        <mrna_strand>TTTGCATTGTATCTGAGACATGGTTGTGGTAAGAGGATGATGTACTATTTTCGAGAGTCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGAAGGTTACTATTTTATCGAGGGTCGTGTCGTGCACCGCGACAGATGCATGGATACATATGTCCCCCATGGGTCCCAGACTGAGAGACAGCGGGTGTGTATCGTTAAGAAAGACATGCATCACGATATTTGACATTGCATCTCATGGCATTGCACATTTTTATTATTGATGAACTTGAACATGTGTTTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAACTGATAGAGCGTGGTTATTGATTGGTGTTCTTGGTAAACTGTTAGGCTGTAGCGTGGAGGTTTAGATAGGGCGTAAGGAGTACCCGTATTCTTTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTTTATAATTTTTTGTAGGTTACGAGCCCGAATTTTTGTGATATCTTCCATTCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559841" ref_strand="+" ref_description="SGN-E559841 [19400]">
      <seq>cgaggcttggaaccgaagacttggtcttcgtagcagctgaaccatttactgagcactgcctgctttttttcctaatagaaacggacaggactgcgaaagaccaaactgtccttgcagttgctagcataccgctcaccacaattgacgtcgagtggatgaccgtaaggtggcatccagatggttcacatttgaagatcctaacgaaagaggagaatttacaaaggtagagtccacttgcgcctttgttttgatggtggatatcatgtgatggacgaagcagcccatgtttgtagtgattatcgtccaaccgcaaggcaactatggaaagcaccaattgggactgttgaattagggattattggatgcaagaatctgttgcccatgaaagacaaggggtctacggatgcttatgcagttgctaaatatggtaacaagtgggtacgcactcgtaccatatcagatagtttagaacctaggtggaatgagcagtacacttggagagtttatgatccatccactgtgttgactatcggagtatttgatggctgctcggaagtagtattcgaatcagatgagtgcatgaggccaaattttcggattggtaaggtgcgtgtgcgtatttctacatttgaacaaacagcggaagcgtgtacaaaaaatactttcccattacttttgttaatcacaagcttggttttgaagaaaatggggggaaattgaattagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="19690" stop="68295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67277" g_stop="67995" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E559841" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67277" e_stop="67995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTCTTGGAAT-GAAGACTTGGTCTTCGTAGCAGCTGAACCATTTACAGAGAACCACTTGCTATTTTTCCTAATAGAAACGGACAGAACTGCGAAAGAGCAAACCGTCCTTGCAGTTGCTAGCATACCCCTCCCTACAATCGAGCGTCGAGTAGATGACCGTAAGGTGGCGTCTAGATGGTTCACATTTGAAGATCCTAACGAGGAGAAGAGAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACA-TTG-AC-AACAG-GTAA-AGTGTAC-AGGAATACTTTCCCATTACTTTTGTT-ATCACAAAC-TGG-TTTGAAGAAAAT-GGGGGAAATTGAATTAGCAG</genome_strand>
        <mrna_strand>CGAGGCTTGGAACCGAAGACTTGGTCTTCGTAGCAGCTGAACCATTTACTGAGCACTGCCTGCTTTTTTTCCTAATAGAAACGGACAGGACTGCGAAAGACCAAACTGTCCTTGCAGTTGCTAGCATACCGCTCACCACAATTGA-CGTCGAGTGGATGACCGTAAGGTGGCATCCAGATGGTTCACATTTGAAGATCCTAACGA-AAGAGGAGAATTTACAAAGGTAGAGTCCACTTGCGCCTTTGTTTTGATGGTGGATATCATGTGATGGACGAAGCAGCCCATGTTTGTAGTGATTATCGTCCAACCGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTTGAATTAGGGATTATTGGATGCAAGAATCTGTTGCCCATGAAAGACAAGGGGTCTACGGATGCTTATGCAGTTGCTAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCAGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGTATTCGAATCAGATGAGTGCATGAGGCCAAATTTTCGGATTGGTAAGGTGCGTGTGCGTATTTCTACATTTGAACAAACAGCGGAAGCGTGTACAAAAAATACTTTCCCATTACTTTTGTTAATCACAAGCTTGGTTTTGAAGAAAATGGGGGGAAATTGAATTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201934" ref_strand="+" ref_description="SGN-E201934 [cLEC-7-I13]">
      <seq>atttacaaaggtagagtccacttgcgcctctgtttcgatggtggatatcatgtgatggacgaagcagcacatgtttgtagtgattaccgtccaactgcaaggcaactatggaaagcaccaattgggactgtcgaattagggataattggatgtaagaatctgttgcccatgaaaggcaaagggtctacggatgcttatgcagttgccaaatatggtaacaagtgggtacgcactcgtaccatatctgatagtttagaacctaggtggaatgagcagtacacttggagagtttatgatccatccactgtgttgactatcggagtatttgatggctgctcggaagtagcatttgaatcagatgagtgcatgaggccagattttcggattggtaaggtgcgtgtccgtatttctacattgacaacaggtaaagtgtacaggaatactctcccattacttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="67191" stop="68251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67491" g_stop="67951" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E201934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67491" e_stop="67951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTT</genome_strand>
        <mrna_strand>ATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTCTCCCATTACTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555432" ref_strand="+" ref_description="SGN-E555432 [cTSC-3-F22]">
      <seq>ttttcaatgataatagttacttatggactaatacagttatggaaattaatattgaaatacatagtgacctttctgagatgacatatatagaaatgaaaaaaaaaaacttctgaactattataacataaaaataggctaatgcacagcacaagcgcgagtatatttactagtacttaaatagaactagagcattctgtctgaaagtgaaggcaaccttctaaagaaattcaaagcaggggaaggcattctatccctaaatatgggatggcggaggtagtaaaatccaaaggccataaacaccattttagatggtaccaagtataaaatgaatgccacgacaaagcacagcccaataaatatccctgtggctcgagggtcacgccaagttaccaatgcttgcactctctccccttgtgttgcgaaatctcccaagattgtctgaacccgttccccaagcatgcgcagtttatcatatctggctcgtaccaattcgttaggtctagtgcaaggcattgcatcaaactcttcatcaagctcatctctgtctagtgactctgccagtgagatctttggatcaaagtggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="69336" stop="68150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69035" g_stop="68450" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E555432" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69035" e_stop="68450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGT</genome_strand>
        <mrna_strand>TTTTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAAAATCCAAAGGCCATAAACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553825" ref_strand="+" ref_description="SGN-E553825 [cTSC-2-F22]">
      <seq>ttttcaatgataatagttacttatggactaatacagttatggaaattaatattgaaatacatagtgacctttctgagatgacatatatagaaatgaaaaaaaaaaacttctgaactattataacataaaaataggctaatgcacagcacaagcgcgagtatatttactagtacttaaatagaactagagcattctgtctgaaagtgaaggcaaccttctaaagaaattcaaagcaggggaaggcattctatccctaaatatgggatggcggaggtagtagaatccaaaggccatagacaccattttagatggtaccaagtataaaatgaatgccacgacaaagcacagcccaataaatatccctgtggctcgagggtcacgccaagttaccaatgcttgcactctctccccttgtgttgcgaaatctcccaagattgtctgaacccgttccccaagcatgcgcagtttatcatatctggctcgtaccaattcgttaggtctagtgcaaggcattgcatcaaactcttcatcaagctcatctctgtctagtgactctgccagtgagatctttggatcaaagtggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="69336" stop="68150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69035" g_stop="68450" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E553825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69035" e_stop="68450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGT</genome_strand>
        <mrna_strand>TTTTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311683" ref_strand="+" ref_description="SGN-E311683 [cLEZ-9-B24]">
      <seq>ttttttttttttttaggagcaattcataacatacgtctctcttcataaataagtatcgagtacatgtacaaaaactatctatatttgttcggactcttcagaaatgtcgccaagtttattgggttttccattagtgaagttttggaggatcccacatgggtgcaacaataacttcaaagagtttgagcatcataagaagctaaatagatatcacttgtcgaacccctattcagctttctagggaggacaatggcggtgtctctgaatttatccaagttgacgacatgtataaatgtctctcacctttgacaacatcgccagaggtatacgattcgagttctttcatgtcttcctctgtcaattttacagataaggatcctacgttttcgttgaagtttccaatcttcgtagtgcctggtatagggcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="73352" stop="74371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73641" g_stop="74071" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E311683" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73641" e_stop="74071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAAATAATTTAGGAGCAATTCATAACATACGTCTCTCTTCATAAATAAGTATCGAGTACATGTACAAAAACTATCTATATTTGTTCGGACTCTTCAGAAATGTCGCCAAGTTTATTGGGTTTTCCATTAGTGAAGTTTTGGAGGATCCCACATGGGTGCAACAATAACTTCAAAGAGTTTGAGCATCATAAGAAGCTAAATAGATATCACTTGTCGAACCCCTATTCAGCTTTCTAGGGAGGACAATGGCGGTGTCTCTGAATTTATCCAAGTTGACGACATGTATAAATGTCTCTCACCTTTGACAACATCGCCAGAGGTATACGATTCGAGTTCTTTCATGTCTTCCTCTGTCAATTTTACAGATAAGGATCCTACGTTTTCGTTGAAGTTTCCAATCTTCGTAGTGCCTGGTATAGGGCATACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTAGGAGCAATTCATAACATACGTCTCTCTTCATAAATAAGTATCGAGTACATGTACAAAAACTATCTATATTTGTTCGGACTCTTCAGAAATGTCGCCAAGTTTATTGGGTTTTCCATTAGTGAAGTTTTGGAGGATCCCACATGGGTGCAACAATAACTTCAAAGAGTTTGAGCATCATAAGAAGCTAAATAGATATCACTTGTCGAACCCCTATTCAGCTTTCTAGGGAGGACAATGGCGGTGTCTCTGAATTTATCCAAGTTGACGACATGTATAAATGTCTCTCACCTTTGACAACATCGCCAGAGGTATACGATTCGAGTTCTTTCATGTCTTCCTCTGTCAATTTTACAGATAAGGATCCTACGTTTTCGTTGAAGTTTCCAATCTTCGTAGTGCCTGGTATAGGGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335970" ref_strand="+" ref_description="SGN-E335970 [cTOE-6-D23]">
      <seq>agaaaatggaagtaacgacgccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatcggcaaggctattaaaggaataagagagaaagtacaaatagctaccaagtttggtatccgttttgaagatggaaataggggcatttgtggtgaacctgcgtatgtaagggcttgttgtgaggccagcttgaagagacttgatatcgactgcattgatctctattatgttcatcgcatcgatactcagttgccaattgaagtcacgatgggagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="77277" stop="28700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76977" g_stop="76745" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76744" i_stop="76502" i_length="243">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76501" g_stop="76304" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="431" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76303" i_stop="75714" i_length="590">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75713" g_stop="75702" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="443" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E335970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76977" e_stop="76745"/>
          <exon e_start="76501" e_stop="76304"/>
          <exon e_start="75713" e_stop="75702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAGGTGAAGATGTCTTTTTTTTCAAACAAGTAATTGCAAAGTGCTGCAGGAATTAGTTGTACTTCCTTTTTACTTTGTTGTACATGTCTGATCCTGTAGTTTTTCAATTGTTCACTGAGAAAAAAAAATGAAATTTCAGGATTAAATCTTCCAGAGAGTCGAATCTGTATCCTATAGATTTACGTTTTCTACCTGAGTTTTATAGATATGTTATATGTTCATGTTAATCTACCTGATTTTATGTAGGCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTTGTTAAGTCTATGCTACTCTTCCATTTTTGCTTCTCTTCATTTTACGATTTTATTGATGTGTCATTTTACAAACTTCTTCAATTTATGATAAACATGTTCATAACAAGATATTTCTGAAATACTTAAAATTGGAAATGAATTCTCGAGACAAAAGGTTCTCCCAGCATTTGTGAATTCCGTCATACCTAGTTATTAAGTGATGTCGTTTCATAAACTAGTTTCTCGCAATAAGGTTTTTGTGTTGCCATTCAGATTCTATGATTTATGCGTTTGTCTGAAGGTCTATGTGACACACATTCAACTGCGGAATCTGTAGTATCATTACTATATTACAAAATTGTGCTATATATGTTCTAATACTGCTTGCATAAATACTGTTTTAAGATGGGAGAACTG</genome_strand>
        <mrna_strand>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG...................................................................................................................................................................................................................................................GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337251" ref_strand="+" ref_description="SGN-E337251 [cTOE-7-K18]">
      <seq>gaggaagtaaccgaccgcccgttcgacgttccgaggataaagctaggttcacaaggtctagaagtttccaggatcgggctgggctgtatgagtatgtccggtaactacggcccgcccaagcccgaggccgaaatgatcaagctacttcatcacgctattgatactggagtcaccttactcgatacttctgatgtctatggccctcttactaatgaaatactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="77270" stop="76451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76976" g_stop="76751" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E337251" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76976" e_stop="76751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATC</genome_strand>
        <mrna_strand>GAGGAAGTAACCGACCGC-CCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543016" ref_strand="+" ref_description="SGN-E543016 [TUS-64-J21](-)">
      <seq>cagtttcaaacccattgccatgtggagataactgtggtgtaagcatcaactggcatttgttcacagactataggggtggatggtctgccaggatcaccatcttcaactgggaggatgctgcttttgctgattggttcactgcggtggaattggacaaagcagcggctggttttgacgcagtgtattcattcaatggaactatgttagatggggttaataataccatattcatgcagggccttccaggcttgaactatatagtagcagaagcagatggagctaatccagcgaaagatccccgagtacctgggaaacaacaatcagtaatctcattcacaaagaagaatatcccaaacatcaacgttgctgctggtgatgggtttccaacaaaattatacttcaatggagaagagtgctcattgccaaagctactcccaacaagcagttcatctagaatatcttcattcactgtcactacttccattcttgcagcagttgtggtttttatgttggtgcgacaatagcagtgagctgtggcgttttctcttcgtttcatacctgccaattgattcattctttagcgtctgctaccaggttttaatgctggtgaccaatctttcaatcagtttgtcggattatgtattcagggacgtgggtttttcggcgagttttgatttgtaactatttattacactctggaattctcattccangacaatatttgactttaaagttaatacctgttatattagcagataagataagaatacctcagtttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="102918" stop="101537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102618" g_stop="101842" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="782" polyA_stop="794"/>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E543016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102618" e_stop="101842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCA-GACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</genome_strand>
        <mrna_strand>CAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCANGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739269" ref_strand="-" ref_description="SGN-E739269 [LC16DA08]">
      <seq>agataactgtggtgtaagcatcaactgggcatttgttcacagactataggggtggatggtctgccaggatcaccatcttcaactgggaggatgctgcttttgctgattggttcactgcggtggaattggacaaagcagcggctggttttgacgcagtgtattcattcaatggaactatgttagatggggttaataataccatattcatgcagggccttccaggcttgaactatatagtagcagaagcagatggagctaatccagcgaaagatccccgagtacctgggaaacaacaatcagtaatctcattcacaaagaagaatatcccaaacatcaacgttgctgctggtgatgggtttccaacaaaattatacttcaatggagaagagtgctcattgccaaagctactcccaacaagcagttcatctagaatatcttcattcactgtcactacttccattcttgcagcagttgtggtttttatgttggtgcgacaatagcagtgagctgtggcgttttctcttcgtttcatacctgccaattgattcattctttagcgtctgctaccaggttttaatgctggtgaccaatctttcaatcagtttgtcggattatgtattcagggacgtgggtttttcggcgagttttgatttgtaactatttattacactctggaattctcattccagacaatatttgactttaaagttaatacctgttatattagcagataagataagaatacctcagtttgtcaaaaaaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="102893" stop="101537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102593" g_stop="101842" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="767"/>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E739269" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739269" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102593" e_stop="101842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAACTGTGGTGTAAGCATCAACT-GGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCAGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</genome_strand>
        <mrna_strand>AGATAACTGTGGTGTAAGCATCAACTGGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCAGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709103" ref_strand="+" ref_description="SGN-E709103 [FA42CG11]">
      <seq>cgatgtgtggacctccagtccgtgtaagccccacccaagtccctgatcctagtggattgttacctgctacatcagtatttgctagctggcaagttgtatgcaacatcacccaaccaaaaggagctagccccagatgctgtgtttctttctctgctttctacaatgaatctatcattccttgtccaacatgcgcctgtggttgtccttccaatactgctcgtacatgtagcacgaaagccccagctcttctcctcccatctcaggctcttctggttccatttgacaatagaaccaagatgtcccttgcctgggctgaaattaatcatcttccagtttcaaacccattgccatgtggagataactgtggtgtaagcatcaactggcatttgttcacagactataggggtggatggtctgccaggatcaccatcttcaactgggaggatgctgcttttgctgattggttcactgcggtggaattggacaaagcagcggctggttttgacgcagtgtattcattcaatggaactatgttagatggggttaataataccatattcatgcagggccttccaggcttgaactatatagtagcagaagcagatggagctaatccagcgaaagatccccgagtacctgggaaacaacaatcagtaatctcattcacaaagaagaatatcccaaacatcaacgttgctgctggtgatgggtttccaacaaaattatacttcaatggagaagagtgctcattgccaaagctactcccaacaagcagttcatctagaatatcttcattcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="103246" stop="101848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102948" g_stop="102148" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E709103" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102948" e_stop="102148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTG</genome_strand>
        <mrna_strand>CGATGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713284" ref_strand="+" ref_description="SGN-E713284 [FB08AH08]">
      <seq>gataactgtggtgtaagcatcaactggcatttgttcacagactataggggtggatggtctgccaggatcaccatcttcaactgggaggatgctgcttttgctgattggttcactgcggtggaattggacaaagcagcggctggttttgacgcagtgtattcattcaatggaactatgttagatggggttaataataccatattcatgcagggccttccaggcttgaactatatagtagcagaagcagatggagctaatccagcgaaagatccccgagtacctgggaaacaacatcagtaatctcattcacaaagaggaatatcccaaacatcaacgttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="102892" stop="101949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102592" g_stop="102249" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E713284" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102592" e_stop="102249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGC</genome_strand>
        <mrna_strand>GATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAAC-ATCAGTAATCTCATTCACAAAGAGGAATATCCCAAACATCAACGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543017" ref_strand="+" ref_description="SGN-E543017 [TUS-64-J21]">
      <seq>gaccaatgatacaaagttgggaatgatacctttttgttgtcggaatgggacaatcttgccacctgctatggacccaagcaagtctgtttcagcattccagatgaatgtctttaaaatgcctccagatcttaatcgatcctcattcactcctccacagaattggaagatcgaaggcagactgaatccagattacaagtgtggacctccagtccgtgtaagccccacccaagtccctgatcctagtggattgttacctgctacatcagtatttgctagctggcaagttgtatgcaacatcacccaaccaaaaggagctagccccagatgctgtgtttctttctctgctttctacaatgaatctatcattccttgtccaacatgcgcctgtggttgtccttccaatactgctcgtacatgtagcacgaaagccccagctcttctcctcccatctcaggctcttctggttccatttgacaatagaaccaagatgtcccttgcctgggctgaaattaatcatcttccagtttcaaacccattgccatgtggagataactgtggtgtaagcatcaactggcatttgttcacagactataggggtggatggtctgccaggatcaccatcttcaactgggaggatgctgcttttgctgattggttcactgcggtggaattggacaaagcagcggctggttttgacgcagtgtattcattcaatggaactatgttagatggggttaataataccatattcatgcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="103439" stop="102082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103139" g_stop="102382" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E543017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103139" e_stop="102382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGG</genome_strand>
        <mrna_strand>GACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559900" ref_strand="+" ref_description="SGN-E559900 [19469]">
      <seq>tctgacattgggtgagacattagtccacgccaagatggggatcttacaattatgtatgatatcctaagaacatatgattcaaattactgggcacaggttaccatcgcaaaccataacccccttggccgccttgataattggaaactaagttgggactggatgaaggatgagtttatttgggaaatgaaaggcgcatatccctctgttgttgatacttctgagtgtgtttttgggccacaggcaaaattttatcaaaaccttgacttttccactggtttgaactgtcagagaaggccgacactaattgatctgccgctggaaaagaccaatgatacaaagttgggaatgatacctttttgttgtcggaatgggacaatcttgccacctgctatggacccaagcaagtctgtttcagcattccagatgaatgtctttaaaatgcctccagatctcaatcgctcctcgtttactcctccacagaattggaagatcgaaggcagactgaatccagattataaatgtggacctccagtccgtgtaagccccacccaagtccctgatcctagtggattgttacctgctacatcagtatttgcaaagctggcaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="103763" stop="102553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103463" g_stop="102853" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E559900" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103463" e_stop="102853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGC-TAGCTGGCAAGTTG</genome_strand>
        <mrna_strand>TCTGACATTGGGTGAGACA-TTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCACAGGTTACCATCGCAAACCATAACCCCCTTGGCCGCCTTGATAATTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAAAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTCAATCGCTCCTCGTTTACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTATAAATGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCAAAGCTGGCAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731760" ref_strand="+" ref_description="SGN-E731760 [LA28AE01]">
      <seq>gtttatttgccctaaaccctctatgcaaggaaagagtgttatgcaagtatgctgtattaaagacgaaaatttcaagacaaatttgacgttgggtgagaaatttagtccacgccaagatggggatcttacaattatgtatgatatcctaagaacatatgattcaaattactgggctcaggttaccattgcaaaccataatccccttggtcgccttgataactggaaactaagttgggactggatgaaggatgagtttatttgggaaatgaaaggcgcatatccctctgttgttgatacttctgagtgtgtttttgggccacaggcaaaattttatcaaaaccttgacttttccactggtttgaactgtcagagaaggccgacactaattgatctgccgctggagaagaccaatgatacaaagttgggaatgatacctttttgttgtcggaatgggacaatcttgccacctgctatggacccaagcaagtctgtttcagcattccagatgaatgtctttgaaatgcctccagatcttaatcgatcctcattcactcctccacagaattggaagatcgaaggcagactgaatccagattacaagtgtggacctccagtccgtgtaagccccacacaagtccctgatcctaagtggattgttacctgctacatcagtatttgctaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="104562" stop="102560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104262" g_stop="104234" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104233" i_stop="103516" i_length="718">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103515" g_stop="102860" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="686" r_length="657" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E731760" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104262" e_stop="104234"/>
          <exon e_start="103515" e_stop="102860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTGCCCTAAACCCTCTATGCAAGGTACGGATCTTAGATTAAACATCATTGCTGCACCTCTTAATATAATATCTAAAATTAGCAGGACTGGTTATATGAATTCTCTCTAGTTTGAATAATTTGCAGAGGATATGAAATATTTTGGATTGATTCGTATGCAACTTTGTTTTTGTGCTTTACTTAATCAAATTTAGGCCAAAGTTATGGAGTAGTTCTTTTGTGCTACTTGCAAAGTACAAAATGGCTTTAGTTTAGATCTGTTGTTTAAGCTGATTCATTGTTGTTTTTTATGAATGATGCTGGAGGTTATATTAACATTCAAATTGGCCAAATAATCGTGTGTCCTGTACTATTTAACTTTCAATTTAGATTTATTGGAGAATGATGAAGATGGGTATTAGACCGATAACTTTCTGGAGAATTTGGTCCATTACTATGTCAACTTGGATGGAACATTATGTCTGAATCTTGACAACTGTATACGTTGTAAAGATTAGCTGTTATTTGACTGTCTTCTTATCTGGAATTCCTAATGTATAGTTTGTAAAATTTCTTGATTTGTTACTTGGAAGTATGATTAGCCATTGACATTTCAAGCTTCTCCCTTGAATCATTAAAGTGGTCTAGAACATGTATTATTTAGAAATTCTACCTGCCTTCAGTATATTCTTCCTTTTTTGTTTTAAAACAAAACTGTACTTTTTGCATATCATATCTGAATTGCCTATGCTTAACTGTTCAGGAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCT-AGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGG</genome_strand>
        <mrna_strand>GTTTATTTGCCCTAAACCCTCTATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTGAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACACAAGTCCCTGATCCTAAGTGGATTGTTACCTGCTACATCAGTATTTGCTAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698265" ref_strand="+" ref_description="SGN-E698265 [FA05DA12]">
      <seq>caacatttttctctctctttctcctaatcatcaccgtcgccggacaaacaactccgatggctgaagctccggcaccggcagccgacgactgtaacggtatattcttgcagtatgtgtttaattccggatctaaaatcaaacccactttgaaaactcgtcaaccctacaagtttcagtctattctcagtataactaacaacggacttgaggaacttaagttatggagggtttttgttgggtttcaacatgatgagattttggtttctgcttctaacgctctgcttgctgatggggaatcatttcctgctttagttggtaatggtactgtttttgctggatttccggctgccgatcttaagacagctgtggaaactgctggagatactacacagacgagtgttcaaatcaaaattgtgggtacccagtttggagttggctctcctaatgtacctatgccctccaatatctctttggaaaatgatgggtttatttgccctaaaccctctatgcaaggaaagagtgttatgcaagtatgctgtattaaagacgaaaatttcaagacaaatttgacgttgggtgagaaatttagtccacgccaagatggggatcttacaattatgtatgatatcctaagaacatatgattcaaattactgggctcaggttaccattgcaaaccataatccccttggtcgccttgataactggaaactaagttgggactggatgaaagatgagtttatttgggaaatgaaaggcgcatatccctctgttgttgatacttctgagtgtgtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="105046" stop="102930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104746" g_stop="104234" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104233" i_stop="103516" i_length="718">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103515" g_stop="103230" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="799" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E698265" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104746" e_stop="104234"/>
          <exon e_start="103515" e_stop="103230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTTTCTCTCTCTTTCTCCTAATCATCACCGTCGCCGGACAAACAACTCCGATGGCTGAAGCTCCGGCACCGGCAGCCGACGACTGTAACGGTATATTCTTGCAGTATGTGTTTAATTCCGGATCTAAAATCAAACCCACTTTGAAAACTCGTCAACCCTACAAGTTTCAGTCTATTCTCAGTATAACTAACAACGGACTTGAGGAACTTAAGTTATGGAGGGTTTTTGTTGGGTTTCAACATGATGAGATTTTGGTTTCTGCTTCTAACGCTCTGCTTGCTGATGGGGAATCATTTCCTGCTTTAGTTGGTAATGGTACTGTTTTTGCTGGATTTCCGGCTGCCGATCTTAAGACAGCTGTGGAAACTGCTGGAGATACTACACAGACGAGTGTTCAAATCAAAATTGTGGGTACCCAGTTTGGAGTTGGCTCTCCTAATGTACCTATGCCCTCCAATATCTCTTTGGAAAATGATGGGTTTATTTGCCCTAAACCCTCTATGCAAGGTACGGATCTTAGATTAAACATCATTGCTGCACCTCTTAATATAATATCTAAAATTAGCAGGACTGGTTATATGAATTCTCTCTAGTTTGAATAATTTGCAGAGGATATGAAATATTTTGGATTGATTCGTATGCAACTTTGTTTTTGTGCTTTACTTAATCAAATTTAGGCCAAAGTTATGGAGTAGTTCTTTTGTGCTACTTGCAAAGTACAAAATGGCTTTAGTTTAGATCTGTTGTTTAAGCTGATTCATTGTTGTTTTTTATGAATGATGCTGGAGGTTATATTAACATTCAAATTGGCCAAATAATCGTGTGTCCTGTACTATTTAACTTTCAATTTAGATTTATTGGAGAATGATGAAGATGGGTATTAGACCGATAACTTTCTGGAGAATTTGGTCCATTACTATGTCAACTTGGATGGAACATTATGTCTGAATCTTGACAACTGTATACGTTGTAAAGATTAGCTGTTATTTGACTGTCTTCTTATCTGGAATTCCTAATGTATAGTTTGTAAAATTTCTTGATTTGTTACTTGGAAGTATGATTAGCCATTGACATTTCAAGCTTCTCCCTTGAATCATTAAAGTGGTCTAGAACATGTATTATTTAGAAATTCTACCTGCCTTCAGTATATTCTTCCTTTTTTGTTTTAAAACAAAACTGTACTTTTTGCATATCATATCTGAATTGCCTATGCTTAACTGTTCAGGAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGG</genome_strand>
        <mrna_strand>CAACATTTTTCTCTCTCTTTCTCCTAATCATCACCGTCGCCGGACAAACAACTCCGATGGCTGAAGCTCCGGCACCGGCAGCCGACGACTGTAACGGTATATTCTTGCAGTATGTGTTTAATTCCGGATCTAAAATCAAACCCACTTTGAAAACTCGTCAACCCTACAAGTTTCAGTCTATTCTCAGTATAACTAACAACGGACTTGAGGAACTTAAGTTATGGAGGGTTTTTGTTGGGTTTCAACATGATGAGATTTTGGTTTCTGCTTCTAACGCTCTGCTTGCTGATGGGGAATCATTTCCTGCTTTAGTTGGTAATGGTACTGTTTTTGCTGGATTTCCGGCTGCCGATCTTAAGACAGCTGTGGAAACTGCTGGAGATACTACACAGACGAGTGTTCAAATCAAAATTGTGGGTACCCAGTTTGGAGTTGGCTCTCCTAATGTACCTATGCCCTCCAATATCTCTTTGGAAAATGATGGGTTTATTTGCCCTAAACCCTCTATGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAAGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="109854" stop="108924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109554" g_stop="109368" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109367" i_stop="109336" i_length="32">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109335" g_stop="109198" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="325" r_length="138" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109554" e_stop="109368"/>
          <exon e_start="109335" e_stop="109198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAATCTAGAGAAAACTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGTATAAAATTTGCATTTTTCTACAATTGAATTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATGTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTGTATATAAACCGAGAGTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="109854" stop="108924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109554" g_stop="109368" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109367" i_stop="109336" i_length="32">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109335" g_stop="109215" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="308" r_length="121" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109554" e_stop="109368"/>
          <exon e_start="109335" e_stop="109215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAATCTAGAGAAAACTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGTATAAAATTTGCATTTTTCTACAATTGAATTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATGTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337745" ref_strand="+" ref_description="SGN-E337745 [cTOE-17-P22]">
      <seq>cccttcccatttccattttccattttccatttttcactaacactacactctcaactcattcttctctactcaaaattttatcaaaaatgggagtgatgttagctttttcgatcctcataatcactatgatgataacgggtatgcaaaatgagggtaatttggtaaatgccaatgaaacaacttgggcaggttcaaagtatcagattgaatgtacaatgtgtgccgcatgtgacaacccttgcgccaccccatctccgccgccgcctcagccgccgtcgcctcctccaccgccttctacctcttataattgtcctcctccaccctctcctcctagttccgggggaaattactactactctccaccgccaccaccgccttcctcctccggcggcggcggcggcggtaattactactattcaccacctccaccttaccaaaattacccttctggacctactcctccacctccgaatccaattgttccgtattttccattctacttttacaatcctccaccgccttcacagtctgctgctattaagctcactgatttttcacccaaatcttctattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="132867" stop="134041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133167" g_stop="133741" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E337745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133167" e_stop="133741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCCCATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTC</genome_strand>
        <mrna_strand>CCCTTCCCATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706725" ref_strand="+" ref_description="SGN-E706725 [FA30DA07]">
      <seq>atttccattttccattttccatttttcactaacactacactctcaactcattcttctctactcaaaattttatcaaaaatgggagtgatgttagctttttcgatcctcataatcactatgatgataacgggtatgcaaaatgagggtaatttggtaaatgccaatgaaacaacttgggcaggttcaaagtatcagattgaatgtacaatgtgtgccgcatgtgacaacccttgcgccaccccatctccgccgccgcctcagccgccgtcgcctcctccaccgccttctacctcttataattgtcctcctccaccctctcctcctagttccgggggaaattactactactctccaccgccaccaccgccttcctcctccggcggcggcggcggcggtaattactactattcaccacctccaccttaccaaaattacccttctggacctactcctccacctccgaatccaattgttccgtattttccattctacttttacaatcctccaccgccttcacagtctgctgctattaagctcactgatttttcacccaaatcttctattttctttacggtgttcattgcgttgttgattttccattgaaattaatggggggaaattaaataaagtgtctggaatcgcacagatctacaaatgagagcaaagatattgaagaaaaaattggaaagctgtcttgtttctctcatcttctgtaaaattcttgaccattcttcttattatattctcctgtaattttagtttaacttaaattcatattcgtatagaatgtaacaaaactttagtcatttttgtaacaattataaactcaacttctcattcatattctatatattttcactgcaattttattgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="+" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="132875" stop="134350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133175" g_stop="134050" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="+" ref_id="SGN-E706725" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133175" e_stop="134050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTCTTTACGGTGTTCATTGCGTTGTTGATTTTCCATTGAAATTAATGGGGGGAAATTAAATAAAGTGTCTGGAATCGCACAGATCTACAAATGAGAGCAAAGATATTGAAG-AAAAATTGGAAAGCTGTCTTGTTTCTCTCATCTTCTGTAAAATTCTTGACCATTCTTCTTATTATATTCTCCTGTAATTTTAGTTTAACTTAAATTCATATTCGTATAGAATGTAACAAAACTTTAGTCATTTTTGTAACAATTATAAACTCAACTTCTCATTCATATTCTATATATTTTCACTGCAATTTTATTGCTTTT</genome_strand>
        <mrna_strand>ATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTCTTTACGGTGTTCATTGCGTTGTTGATTTTCCATTGAAATTAATGGGGGGAAATTAAATAAAGTGTCTGGAATCGCACAGATCTACAAATGAGAGCAAAGATATTGAAGAAAAAATTGGAAAGCTGTCTTGTTTCTCTCATCTTCTGTAAAATTCTTGACCATTCTTCTTATTATATTCTCCTGTAATTTTAGTTTAACTTAAATTCATATTCGTATAGAATGTAACAAAACTTTAGTCATTTTTGTAACAATTATAAACTCAACTTCTCATTCATATTCTATATATTTTCACTGCAATTTTATTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230382" ref_strand="+" ref_description="SGN-E230382 [cLEL-35-E15](-)">
      <seq>aagaaaatagaagatttgggtgaanaatcagtgagcttaatagcagcagactgtgaaggcggtggaggattgtaaaagtagaatggaaaatacggaacaattggattcggaggtggaggagtaggtccagaagggtaattttggtaaggtggaggtggtgaatagtagtaattaccgccgccgccgccgccggaggaggaaggcggtggtggcggtggagagtagtagtaatttcccccggaactaggaggagagggtggaggaggacaattataagaggtagaaggcggtggaggaggcgacggcggctgaggcggcggcggagatggggtggcgcaagggttgtcacatgcggcacacattgtacattcaatctgatactttgaacctgcccaagttgtttcattggcatttaccaaataaaccacattttgcataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="134043" stop="133003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133743" g_stop="133303" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E230382" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133743" e_stop="133303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATAGAAGATTTGGGTGAAAAATCAGTGAGCTTAATAGCAGCAGACTGTGAAGGCGGTGGAGGATTGTAAAAGTAGAATGGAAAATACGGAACAATTGGATTCGGAGGTGGAGGAGTAGGTCCAGAAGGGTAATTTTGGTAAGGTGGAGGTGGTGAATAGTAGTAATTACCGCCGCCGCCGCCGCCGGAGGAGGAAGGCGGTGGTGGCGGTGGAGAGTAGTAGTAATTTCCCCCGGAACTAGGAGGAGAGGGTGGAGGAGGACAATTATAAGAGGTAGAAGGCGGTGGAGGAGGCGACGGCGGCTGAGGCGGCGGCGGAGATGGGGTGGCGCAAGGGTTGTCACATGCGGCACACATTGTACATTCAATCTGATACTTTGAACCTGCCCAAGTTGTTTCATTGGCATTTACCAAATTACCCTCATTTTGCATACCC</genome_strand>
        <mrna_strand>AAGAAAATAGAAGATTTGGGTGAANAATCAGTGAGCTTAATAGCAGCAGACTGTGAAGGCGGTGGAGGATTGTAAAAGTAGAATGGAAAATACGGAACAATTGGATTCGGAGGTGGAGGAGTAGGTCCAGAAGGGTAATTTTGGTAAGGTGGAGGTGGTGAATAGTAGTAATTACCGCCGCCGCCGCCGCCGGAGGAGGAAGGCGGTGGTGGCGGTGGAGAGTAGTAGTAATTTCCCCCGGAACTAGGAGGAGAGGGTGGAGGAGGACAATTATAAGAGGTAGAAGGCGGTGGAGGAGGCGACGGCGGCTGAGGCGGCGGCGGAGATGGGGTGGCGCAAGGGTTGTCACATGCGGCACACATTGTACATTCAATCTGATACTTTGAACCTGCCCAAGTTGTTTCATTGGCATTTACCAAATAAACCACATTTTGCATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230888" ref_strand="+" ref_description="SGN-E230888 [cLEL-35-E15](-)">
      <seq>cagtgagcttaatagcagcagactgtgaaggcggtggaggattgtaaaagtagaatggaaaatacggaacaattggattcggaggtggaggagtaggtccagaagggtaattttggtaaggtggaggtggtgaatagtagtaattaccgccgccgccgccgccggaggaggaaggcggtggtggcggtggagagtagtagtaatttcccccggaactaggaggagagggtggaggaggacaattataagaggtagaaggcggtggaggaggcgacggcggctgaggcggcggcggagatggggtggcgcaagggttgtcacatgcggcacacattgtacattcaatctgatactttgaacctgcccaagttgtttcattggcatttaccaaattaccctcattttgcataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0023H04-y1rEj/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0023H04.2" temp_strand="-" temp_description="C01HBa0023H04.2  AC238505.4 htgs_phase:2 submitted_to_sgn_as:C01HBa0023H04 upload_account_name:manual">
        <position start="134015" stop="133003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133715" g_stop="133303" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0023H04.2" gen_strand="-" ref_id="SGN-E230888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0023H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133715" e_stop="133303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGCTTAATAGCAGCAGACTGTGAAGGCGGTGGAGGATTGTAAAAGTAGAATGGAAAATACGGAACAATTGGATTCGGAGGTGGAGGAGTAGGTCCAGAAGGGTAATTTTGGTAAGGTGGAGGTGGTGAATAGTAGTAATTACCGCCGCCGCCGCCGCCGGAGGAGGAAGGCGGTGGTGGCGGTGGAGAGTAGTAGTAATTTCCCCCGGAACTAGGAGGAGAGGGTGGAGGAGGACAATTATAAGAGGTAGAAGGCGGTGGAGGAGGCGACGGCGGCTGAGGCGGCGGCGGAGATGGGGTGGCGCAAGGGTTGTCACATGCGGCACACATTGTACATTCAATCTGATACTTTGAACCTGCCCAAGTTGTTTCATTGGCATTTACCAAATTACCCTCATTTTGCATACCC</genome_strand>
        <mrna_strand>CAGTGAGCTTAATAGCAGCAGACTGTGAAGGCGGTGGAGGATTGTAAAAGTAGAATGGAAAATACGGAACAATTGGATTCGGAGGTGGAGGAGTAGGTCCAGAAGGGTAATTTTGGTAAGGTGGAGGTGGTGAATAGTAGTAATTACCGCCGCCGCCGCCGCCGGAGGAGGAAGGCGGTGGTGGCGGTGGAGAGTAGTAGTAATTTCCCCCGGAACTAGGAGGAGAGGGTGGAGGAGGACAATTATAAGAGGTAGAAGGCGGTGGAGGAGGCGACGGCGGCTGAGGCGGCGGCGGAGATGGGGTGGCGCAAGGGTTGTCACATGCGGCACACATTGTACATTCAATCTGATACTTTGAACCTGCCCAAGTTGTTTCATTGGCATTTACCAAATTACCCTCATTTTGCATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>36</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="20202" PGL_stop="20662"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20202" e_stop="20662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="20202" e_stop="20662" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20202" stop="20662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTT</gDNA_template>
            <first_frame> I  Y  K  G  R  V  H  L  R  L  C  F  D  G  G  Y  H  V  M  D  E  A  A  H  V  C  S  D  Y  R  P  T  A  R  Q  L  W  K  A  P  I  G  T  V  E  L  G  I  I  G  C  K  N  L  L  P  M  K  G  K  G  S  T  D  A  Y  A  V  A  K  Y  G  N  K  W  V  R  T  R  T  I  S  D  S  L  E  P  R  W  N  E  Q  Y  T  W  R  V  Y  D  P  S  T  V  L  T  I  G  V  F  D  G  C  S  E  V  A  F  E  S  D  E  C  M  R  P  D  F  R  I  G  K  V  R  V  R  I  S  T  L  T  T  G  K  V  Y  R  N  T  F  P  L  L  L   </first_frame>
            <second_frame>  F  T  K  V  E  S  T  C  A  S  V  S  M  V  D  I  M  *  W  T  K  Q  H  M  F  V  V  I  T  V  Q  L  Q  G  N  Y  G  K  H  Q  L  G  L  S  N  *  G  *  L  D  V  R  I  C  C  P  *  K  A  K  G  L  R  M  L  M  Q  L  P  N  M  V  T  S  G  Y  A  L  V  P  Y  L  I  V  *  N  L  G  G  M  S  S  T  L  G  E  F  M  I  H  P  L  C  *  L  S  E  Y  L  M  A  A  R  K  *  H  L  N  Q  M  S  A  *  G  Q  I  F  G  L  V  R  C  V  S  V  F  L  H  *  Q  Q  V  K  C  T  G  I  L  S  H  Y  F  C  </second_frame>
            <third_frame>   L  Q  R  *  S  P  L  A  P  L  F  R  W  W  I  S  C  D  G  R  S  S  T  C  L  *  *  L  P  S  N  C  K  A  T  M  E  S  T  N  W  D  C  R  I  R  D  N  W  M  *  E  S  V  A  H  E  R  Q  R  V  Y  G  C  L  C  S  C  Q  I  W  *  Q  V  G  T  H  S  Y  H  I  *  *  F  R  T  *  V  E  *  A  V  H  L  E  S  L  *  S  I  H  C  V  D  Y  R  S  I  *  W  L  L  G  S  S  I  *  I  R  *  V  H  E  A  R  F  S  D  W  *  G  A  C  P  Y  F  Y  I  D  N  R  *  S  V  Q  E  Y  F  P  I  T  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20202" stop="20660"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKAPIGTVELGIIGCKNLLPMKGKGSTDAYAVAKYGNKWVRTRTISDSLEPRWNEQYTWRVYDPSTVLTIGVFDGCSEVAFESDECMRPDFRIGKVRVRISTLTTGKVYRNTFPLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="26349" PGL_stop="26779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26349" e_stop="26779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="26349" e_stop="26779" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26349" stop="26779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTAAATAATTTAGGAGCAATTCATAACATACGTCTCTCTTCATAAATAAGTATCGAGTACATGTACAAAAACTATCTATATTTGTTCGGACTCTTCAGAAATGTCGCCAAGTTTATTGGGTTTTCCATTAGTGAAGTTTTGGAGGATCCCACATGGGTGCAACAATAACTTCAAAGAGTTTGAGCATCATAAGAAGCTAAATAGATATCACTTGTCGAACCCCTATTCAGCTTTCTAGGGAGGACAATGGCGGTGTCTCTGAATTTATCCAAGTTGACGACATGTATAAATGTCTCTCACCTTTGACAACATCGCCAGAGGTATACGATTCGAGTTCTTTCATGTCTTCCTCTGTCAATTTTACAGATAAGGATCCTACGTTTTCGTTGAAGTTTCCAATCTTCGTAGTGCCTGGTATAGGGCATACA</gDNA_template>
            <first_frame> Q  L  N  N  L  G  A  I  H  N  I  R  L  S  S  *  I  S  I  E  Y  M  Y  K  N  Y  L  Y  L  F  G  L  F  R  N  V  A  K  F  I  G  F  S  I  S  E  V  L  E  D  P  T  W  V  Q  Q  *  L  Q  R  V  *  A  S  *  E  A  K  *  I  S  L  V  E  P  L  F  S  F  L  G  R  T  M  A  V  S  L  N  L  S  K  L  T  T  C  I  N  V  S  H  L  *  Q  H  R  Q  R  Y  T  I  R  V  L  S  C  L  P  L  S  I  L  Q  I  R  I  L  R  F  R  *  S  F  Q  S  S  *  C  L  V  *  G  I   </first_frame>
            <second_frame>  S  *  I  I  *  E  Q  F  I  T  Y  V  S  L  H  K  *  V  S  S  T  C  T  K  T  I  Y  I  C  S  D  S  S  E  M  S  P  S  L  L  G  F  P  L  V  K  F  W  R  I  P  H  G  C  N  N  N  F  K  E  F  E  H  H  K  K  L  N  R  Y  H  L  S  N  P  Y  S  A  F  *  G  G  Q  W  R  C  L  *  I  Y  P  S  *  R  H  V  *  M  S  L  T  F  D  N  I  A  R  G  I  R  F  E  F  F  H  V  F  L  C  Q  F  Y  R  *  G  S  Y  V  F  V  E  V  S  N  L  R  S  A  W  Y  R  A  Y  </second_frame>
            <third_frame>   V  K  *  F  R  S  N  S  *  H  T  S  L  F  I  N  K  Y  R  V  H  V  Q  K  L  S  I  F  V  R  T  L  Q  K  C  R  Q  V  Y  W  V  F  H  *  *  S  F  G  G  S  H  M  G  A  T  I  T  S  K  S  L  S  I  I  R  S  *  I  D  I  T  C  R  T  P  I  Q  L  S  R  E  D  N  G  G  V  S  E  F  I  Q  V  D  D  M  Y  K  C  L  S  P  L  T  T  S  P  E  V  Y  D  S  S  S  F  M  S  S  S  V  N  F  T  D  K  D  P  T  F  S  L  K  F  P  I  F  V  V  P  G  I  G  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26552" stop="26779"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDITCRTPIQLSREDNGGVSEFIQVDDMYKCLSPLTTSPEVYDSSSFMSSSVNFTDKDPTFSLKFPIFVVPGIGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29684" PGL_stop="26353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29684" e_stop="29452"/>
            <exon e_start="29208" e_stop="29011"/>
            <exon e_start="28421" e_stop="28250"/>
            <exon e_start="28170" e_stop="28068"/>
            <exon e_start="26913" e_stop="26353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.530" e_score="1.000"/>
          <exon-intron don_prob="0.405" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.942"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29684" e_stop="29452" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29208" e_stop="29011" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.530">
            <gDNA_intron_boundary i_start="29010" i_stop="28422" i_length="589"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="28421" e_stop="28250" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.405" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28249" i_stop="28171" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="28170" e_stop="28068" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154"/>
          </intron>
          <exon e_serial="5" e_score="0.914">
            <gDNA_exon_boundary e_start="26913" e_stop="26353" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29684" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28250"/>
              <exon start="28170" stop="28068"/>
              <exon start="26913" stop="26802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29684" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28250"/>
              <exon start="28170" stop="28068"/>
              <exon start="26913" stop="26894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29684" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29684" stop="29452"/>
              <exon start="29208" stop="29011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29683" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28250"/>
              <exon start="28170" stop="28085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29683" stop="29458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29664" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29484" stop="29452"/>
              <exon start="29208" stop="29011"/>
              <exon start="28421" stop="28250"/>
              <exon start="28170" stop="28068"/>
              <exon start="26913" stop="26717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28068"/>
              <exon start="26913" stop="26353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422251" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG : GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG : ATGGGAGAACTGAAGAAACTCGTTGAAGAGGTAAAATAAAATATATAGGTCTATCAGAGGCTTGTGCATCAACAATCAGAAGGGCCCATGCTGTTCATCCAATAACAGCTGTCCAGATGGAATGGTCATTGTGGACTAGAGATCTGGAGGAAGAAGTAGTTCCTACTTGCAG : AGAACTTGGCATAGGGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAG : AATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGAATTGCTCCTAAATTATTTA</gDNA_template>
            <first_frame> R  K  W  K  *  R  R  R  S  T  F  R  G  *  S  *  V  H  K  V  *  K  F  P  G  S  G  W  A  V  *  V  C  P  V  T  T  A  R  P  S  P  R  P  K  *  S  S  Y  F  I  T  L  L  I  L  E  S  P  Y  S  I  L  L  M  S  M  A  L  L  L  M  K  Y  S  S  A  R :   L  L  K  E  *  E  R  K  Y  K  *  L  P  S  L  V  S  V  L  K  M  E  I  G  A  F  V  V  N  L  R  M  *  G  L  V  V  R  P  A  *  R  D  L  I  S  T  A  L  I  S  I  M  F  I  A  S  I  L  S  C  Q  L  K  S  R :   W  E  N  *  R  N  S  L  K  R  *  N  K  I  Y  R  S  I  R  G  L  C  I  N  N  Q  K  G  P  C  C  S  S  N  N  S  C  P  D  G  M  V  I  V  D  *  R  S  G  G  R  S  S  S  Y  L  Q  :  R  T  W  H  R  D  C  P  L  *  S  S  R  T  R  I  L  I  S  R  G  K  A  D  R  K  L  G  *  *  *  L  S  Q   : E  F  P  *  V  Q  A  R  E  F  *  A  *  Q  A  S  I  C  E  Y  Q  S  N  G  C  K  E  R  M  H  S  F  T  I  S  I  G  M  D  S  S  P  R  R  *  C  M  P  Y  T  R  H  Y  E  D  W  K  L  Q  R  K  R  R  I  L  I  C  K  I  D  R  G  R  H  E  R  T  R  I  V  Y  L  W  R  C  C  Q  R  *  E  T  F  I  H  V  V  N  L  D  K  F  R  D  T  A  I  V  L  P  R  K  L  N  R  G  S  T  S  D  I  Y  L  A  S  Y  D  A  Q  T  L  *  S  Y  C  C  T  H  V  G  S  S  K  T  S  L  M  E  N  P  I  N  L  A  T  F  L  K  S  P  N  K  Y  R  *  F  L  Y  M  Y  S  I  L  I  Y  E  E  R  R  M  L  *  I  A  P  K  L  F  </first_frame>
            <second_frame>  E  N  G  S  N  D  A  V  R  R  S  E  D  K  A  R  F  T  R  S  R  S  F  Q  D  R  A  G  L  Y  E  Y  V  R  *  L  R  P  A  Q  A  R  G  R  N  D  Q  A  T  S  S  R  Y  *  Y  W  S  H  L  T  R  Y  F  *  C  L  W  P  S  Y  *  *  N  T  H  R  Q   : G  Y  *  R  N  K  R  E  S  T  N  S  Y  Q  V  W  Y  P  F  *  R  W  K  *  G  H  L  W  *  T  C  V  C  K  G  L  L  *  G  Q  L  E  E  T  *  Y  R  L  H  *  S  L  L  C  S  S  H  R  Y  S  V  A  N  *  S  H   : D  G  R  T  E  E  T  R  *  R  G  K  I  K  Y  I  G  L  S  E  A  C  A  S  T  I  R  R  A  H  A  V  H  P  I  T  A  V  Q  M  E  W  S  L  W  T  R  D  L  E  E  E  V  V  P  T  C  R :   E  L  G  I  G  I  V  P  Y  S  P  L  G  R  G  F  L  S  A  G  A  K  L  I  E  S  L  A  D  D  D  F  R  K  :  N  F  P  R  F  K  P  E  N  F  E  H  N  K  Q  V  F  V  N  I  N  L  M  A  A  R  K  G  C  T  P  S  Q  L  A  L  A  W  I  L  H  Q  G  D  D  V  C  P  I  P  G  T  T  K  I  G  N  F  N  E  N  V  G  S  L  S  V  K  L  T  E  E  D  M  K  E  L  E  S  Y  T  S  G  D  V  V  K  G  E  R  H  L  Y  M  S  S  T  W  I  N  S  E  T  P  P  L  S  S  L  E  S  *  I  G  V  R  Q  V  I  S  I  *  L  L  M  M  L  K  L  F  E  V  I  V  A  P  M  W  D  P  P  K  L  H  *  W  K  T  Q  *  T  W  R  H  F  *  R  V  R  T  N  I  D  S  F  C  T  C  T  R  Y  L  F  M  K  R  D  V  C  Y  E  L  L  L  N  Y  L </second_frame>
            <third_frame>   K  M  E  V  T  T  P  F  D  V  P  R  I  K  L  G  S  Q  G  L  E  V  S  R  I  G  L  G  C  M  S  M  S  G  N  Y  G  P  P  K  P  E  A  E  M  I  K  L  L  H  H  A  I  D  T  G  V  T  L  L  D  T  S  D  V  Y  G  P  L  T  N  E  I  L  I  G  K  :  A  I  K  G  I  R  E  K  V  Q  I  A  T  K  F  G  I  R  F  E  D  G  N  R  G  I  C  G  E  P  A  Y  V  R  A  C  C  E  A  S  L  K  R  L  D  I  D  C  I  D  L  Y  Y  V  H  R  I  D  T  Q  L  P  I  E  V  T  :  M  G  E  L  K  K  L  V  E  E  V  K  *  N  I  *  V  Y  Q  R  L  V  H  Q  Q  S  E  G  P  M  L  F  I  Q  *  Q  L  S  R  W  N  G  H  C  G  L  E  I  W  R  K  K  *  F  L  L  A   : E  N  L  A  *  G  L  S  P  I  V  L  S  D  E  D  S  Y  Q  Q  G  Q  S  *  S  K  A  W  L  M  M  T  F  A  R :   I  S  L  G  S  S  Q  R  I  L  S  I  T  S  K  Y  L  *  I  S  I  *  W  L  Q  G  K  D  A  L  L  H  N  *  H  W  H  G  F  F  T  K  E  M  M  Y  A  L  Y  Q  A  L  R  R  L  E  T  S  T  K  T  *  D  P  Y  L  *  N  *  Q  R  K  T  *  K  N  S  N  R  I  P  L  A  M  L  S  K  V  R  D  I  Y  T  C  R  Q  L  G  *  I  Q  R  H  R  H  C  P  P  *  K  A  E  *  G  F  D  K  *  Y  L  F  S  F  L  *  C  S  N  S  L  K  L  L  L  H  P  C  G  I  L  Q  N  F  T  N  G  K  P  N  K  L  G  D  I  S  E  E  S  E  Q  I  *  I  V  F  V  H  V  L  D  T  Y  L  *  R  E  T  Y  V  M  N  C  S  *  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28395" stop="28250"/>
                    <exon start="28170" stop="28068"/>
                    <exon start="26913" stop="26578"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGKIKYIGLSEACASTIRRAHAVHPITAVQMEWSLWTRDLEEEVVPTCRELGIGIVPYSPLGRGFLSAGAKLIESLADDDFRKNFPRFKPENFEHNKQVFVNINLMAARKGCTPSQLALAWILHQGDDVCPIPGTTKIGNFNENVGSLSVKLTEEDMKELESYTSGDVVKGERHLYMSSTWINSETPPLSSLES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29682" stop="29452"/>
                    <exon start="29208" stop="29011"/>
                    <exon start="28421" stop="28383"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVTTPFDVPRIKLGSQGLEVSRIGLGCMSMSGNYGPPKPEAEMIKLLHHAIDTGVTLLDTSDVYGPLTNEILIGKAIKGIREKVQIATKFGIRFEDGNRGICGEPAYVRACCEASLKRLDIDCIDLYYVHRIDTQLPIEVTMGELKKLVEEVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29684" e_stop="29452"/>
            <exon e_start="29208" e_stop="28805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29684" e_stop="29452" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29451" i_stop="29209" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="29208" e_stop="28805" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29684" stop="29452"/>
              <exon start="29208" stop="29011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29683" stop="29458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29641" stop="29452"/>
              <exon start="29208" stop="28805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG : GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACGGTTTGACATCTTTGCTCCAAATTTCTATTTTTGCAGTGTACTTCATCACTCTTTAAGTTTTAAGAAGTAGTTGCATTATATGATTTGCGTGTCTAATTAGGTAAATCCTATTTCATTGATCATAGCCTATAGAGTCAATTTTTTTCCAAGTTGTTATCCAAAAGTACTACTTGTACTTGGTTTGATTGGTATATCAGTCTATTTTT</gDNA_template>
            <first_frame> R  K  W  K  *  R  R  R  S  T  F  R  G  *  S  *  V  H  K  V  *  K  F  P  G  S  G  W  A  V  *  V  C  P  V  T  T  A  R  P  S  P  R  P  K  *  S  S  Y  F  I  T  L  L  I  L  E  S  P  Y  S  I  L  L  M  S  M  A  L  L  L  M  K  Y  S  S  A  R :   L  L  K  E  *  E  R  K  Y  K  *  L  P  S  L  V  S  V  L  K  M  E  I  G  A  F  V  V  N  L  R  M  *  G  L  V  V  R  P  A  *  R  D  L  I  S  T  A  L  I  S  I  M  F  I  A  S  I  L  S  C  Q  L  K  S  R  F  D  I  F  A  P  N  F  Y  F  C  S  V  L  H  H  S  L  S  F  K  K  *  L  H  Y  M  I  C  V  S  N  *  V  N  P  I  S  L  I  I  A  Y  R  V  N  F  F  P  S  C  Y  P  K  V  L  L  V  L  G  L  I  G  I  S  V  Y  F  </first_frame>
            <second_frame>  E  N  G  S  N  D  A  V  R  R  S  E  D  K  A  R  F  T  R  S  R  S  F  Q  D  R  A  G  L  Y  E  Y  V  R  *  L  R  P  A  Q  A  R  G  R  N  D  Q  A  T  S  S  R  Y  *  Y  W  S  H  L  T  R  Y  F  *  C  L  W  P  S  Y  *  *  N  T  H  R  Q   : G  Y  *  R  N  K  R  E  S  T  N  S  Y  Q  V  W  Y  P  F  *  R  W  K  *  G  H  L  W  *  T  C  V  C  K  G  L  L  *  G  Q  L  E  E  T  *  Y  R  L  H  *  S  L  L  C  S  S  H  R  Y  S  V  A  N  *  S  H  G  L  T  S  L  L  Q  I  S  I  F  A  V  Y  F  I  T  L  *  V  L  R  S  S  C  I  I  *  F  A  C  L  I  R  *  I  L  F  H  *  S  *  P  I  E  S  I  F  F  Q  V  V  I  Q  K  Y  Y  L  Y  L  V  *  L  V  Y  Q  S  I  F </second_frame>
            <third_frame>   K  M  E  V  T  T  P  F  D  V  P  R  I  K  L  G  S  Q  G  L  E  V  S  R  I  G  L  G  C  M  S  M  S  G  N  Y  G  P  P  K  P  E  A  E  M  I  K  L  L  H  H  A  I  D  T  G  V  T  L  L  D  T  S  D  V  Y  G  P  L  T  N  E  I  L  I  G  K  :  A  I  K  G  I  R  E  K  V  Q  I  A  T  K  F  G  I  R  F  E  D  G  N  R  G  I  C  G  E  P  A  Y  V  R  A  C  C  E  A  S  L  K  R  L  D  I  D  C  I  D  L  Y  Y  V  H  R  I  D  T  Q  L  P  I  E  V  T  V  *  H  L  C  S  K  F  L  F  L  Q  C  T  S  S  L  F  K  F  *  E  V  V  A  L  Y  D  L  R  V  *  L  G  K  S  Y  F  I  D  H  S  L  *  S  Q  F  F  S  K  L  L  S  K  S  T  T  C  T  W  F  D  W  Y  I  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29682" stop="29452"/>
                    <exon start="29208" stop="29005"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVTTPFDVPRIKLGSQGLEVSRIGLGCMSMSGNYGPPKPEAEMIKLLHHAIDTGVTLLDTSDVYGPLTNEILIGKAIKGIREKVQIATKFGIRFEDGNRGICGEPAYVRACCEASLKRLDIDCIDLYYVHRIDTQLPIEVTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28253" e_stop="28250"/>
            <exon e_start="28156" e_stop="28068"/>
            <exon e_start="26913" e_stop="26353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.405" acc_prob="0.149" e_score="0.500"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.955"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="28253" e_stop="28250" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.405" acc_prob="0.149">
            <gDNA_intron_boundary i_start="28249" i_stop="28157" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="28156" e_stop="28068" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28067" i_stop="26914" i_length="1154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26913" e_stop="26353" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28253" stop="28250"/>
              <exon start="28156" stop="28068"/>
              <exon start="26913" stop="26372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28068"/>
              <exon start="26913" stop="26353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422251" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAG : GGATTGTCCCCTATAGTCCTCTCGGACGAGGATTCTTATCAGCAGGGGCAAAGCTGATCGAAAGCTTGGCTGATGATGACTTTCGCAAG : AATTTCCCTAGGTTCAAGCCAGAGAATTTTGAGCATAACAAGCAAGTATTTGTGAATATCAATCTAATGGCTGCAAGGAAAGGATGCACTCCTTCACAATTAGCATTGGCATGGATTCTTCACCAAGGAGATGATGTATGCCCTATACCAGGCACTACGAAGATTGGAAACTTCAACGAAAACGTAGGATCCTTATCTGTAAAATTGACAGAGGAAGACATGAAAGAACTCGAATCGTATACCTCTGGCGATGTTGTCAAAGGTGAGAGACATTTATACATGTCGTCAACTTGGATAAATTCAGAGACACCGCCATTGTCCTCCCTAGAAAGCTGAATAGGGGTTCGACAAGTGATATCTATTTAGCTTCTTATGATGCTCAAACTCTTTGAAGTTATTGTTGCACCCATGTGGGATCCTCCAAAACTTCACTAATGGAAAACCCAATAAACTTGGCGACATTTCTGAAGAGTCCGAACAAATATAGATAGTTTTTGTACATGTACTCGATACTTATTTATGAAGAGAGACGTATGTTATGAATTGCTCCTAAATTATTTA</gDNA_template>
            <first_frame> A   : G  I  V  P  Y  S  P  L  G  R  G  F  L  S  A  G  A  K  L  I  E  S  L  A  D  D  D  F  R  K  :  N  F  P  R  F  K  P  E  N  F  E  H  N  K  Q  V  F  V  N  I  N  L  M  A  A  R  K  G  C  T  P  S  Q  L  A  L  A  W  I  L  H  Q  G  D  D  V  C  P  I  P  G  T  T  K  I  G  N  F  N  E  N  V  G  S  L  S  V  K  L  T  E  E  D  M  K  E  L  E  S  Y  T  S  G  D  V  V  K  G  E  R  H  L  Y  M  S  S  T  W  I  N  S  E  T  P  P  L  S  S  L  E  S  *  I  G  V  R  Q  V  I  S  I  *  L  L  M  M  L  K  L  F  E  V  I  V  A  P  M  W  D  P  P  K  L  H  *  W  K  T  Q  *  T  W  R  H  F  *  R  V  R  T  N  I  D  S  F  C  T  C  T  R  Y  L  F  M  K  R  D  V  C  Y  E  L  L  L  N  Y  L </first_frame>
            <second_frame>  Q  :  G  L  S  P  I  V  L  S  D  E  D  S  Y  Q  Q  G  Q  S  *  S  K  A  W  L  M  M  T  F  A  R :   I  S  L  G  S  S  Q  R  I  L  S  I  T  S  K  Y  L  *  I  S  I  *  W  L  Q  G  K  D  A  L  L  H  N  *  H  W  H  G  F  F  T  K  E  M  M  Y  A  L  Y  Q  A  L  R  R  L  E  T  S  T  K  T  *  D  P  Y  L  *  N  *  Q  R  K  T  *  K  N  S  N  R  I  P  L  A  M  L  S  K  V  R  D  I  Y  T  C  R  Q  L  G  *  I  Q  R  H  R  H  C  P  P  *  K  A  E  *  G  F  D  K  *  Y  L  F  S  F  L  *  C  S  N  S  L  K  L  L  L  H  P  C  G  I  L  Q  N  F  T  N  G  K  P  N  K  L  G  D  I  S  E  E  S  E  Q  I  *  I  V  F  V  H  V  L  D  T  Y  L  *  R  E  T  Y  V  M  N  C  S  *  I  I   </second_frame>
            <third_frame>   R :   D  C  P  L  *  S  S  R  T  R  I  L  I  S  R  G  K  A  D  R  K  L  G  *  *  *  L  S  Q   : E  F  P  *  V  Q  A  R  E  F  *  A  *  Q  A  S  I  C  E  Y  Q  S  N  G  C  K  E  R  M  H  S  F  T  I  S  I  G  M  D  S  S  P  R  R  *  C  M  P  Y  T  R  H  Y  E  D  W  K  L  Q  R  K  R  R  I  L  I  C  K  I  D  R  G  R  H  E  R  T  R  I  V  Y  L  W  R  C  C  Q  R  *  E  T  F  I  H  V  V  N  L  D  K  F  R  D  T  A  I  V  L  P  R  K  L  N  R  G  S  T  S  D  I  Y  L  A  S  Y  D  A  Q  T  L  *  S  Y  C  C  T  H  V  G  S  S  K  T  S  L  M  E  N  P  I  N  L  A  T  F  L  K  S  P  N  K  Y  R  *  F  L  Y  M  Y  S  I  L  I  Y  E  E  R  R  M  L  *  I  A  P  K  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28253" stop="28250"/>
                    <exon start="28156" stop="28068"/>
                    <exon start="26913" stop="26578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGIVPYSPLGRGFLSAGAKLIESLADDDFRKNFPRFKPENFEHNKQVFVNINLMAARKGCTPSQLALAWILHQGDDVCPIPGTTKIGNFNENVGSLSVKLTEEDMKELESYTSGDVVKGERHLYMSSTWINSETPPLSSLES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33357" PGL_stop="33006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33357" e_stop="33006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="33357" e_stop="33006" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAGGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  R  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  T  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  R  G  G  W  D  *  G  L  Q  I  L  E  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  F  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0023H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38489" PGL_stop="37908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38489" e_stop="37908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="38489" e_stop="37908" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38489" stop="37908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCATTGTATCTGAGACATGATTGTGGTATAAGGATGTATCATTTCGAGGATCGTATCGCGCGCCGCGATGGATATTATATTTCGAGGGACGTATCGCGCGCCGCGATGGTTACTATTATCGAGGGTCATGTCGTGCGCCGCGACAGATGTATGGACAGATATGTCCCCCATGGATCCCGGACTGATAGACAGCGGGTGTGTATCGTTAAGAAAGACATGCATCACGATATTTGACATTGCATCTCATGGTATTGCACATTTTTATTATTGATGAACTTGAACATGTATTTTGCTGATCTTGTGATTGTTTCTCTGTGAAGCTTGTGACTGTTGAATATTGAGTTGTTATTGAGAATGTGTAAACTGATAGAGTGTGGTTATTGAGTGGTGTGTTTGGTAAACTGTTAGGATGTAGCGTGGAGGTTTAGATAGGCGTAAGGAGTACCCATATTTTGTTCACTTAACTTGTGTTTAGAGGTTTGCTTGTTGGGTACCGCGTGGTTTGGTACTCACCCCTTGCTTCTACAAATTTTTGTAGGTTACGAGCCCGGATTTTTGTGATACCTTCCATTCTCTTCA</gDNA_template>
            <first_frame> I  A  L  Y  L  R  H  D  C  G  I  R  M  Y  H  F  E  D  R  I  A  R  R  D  G  Y  Y  I  S  R  D  V  S  R  A  A  M  V  T  I  I  E  G  H  V  V  R  R  D  R  C  M  D  R  Y  V  P  H  G  S  R  T  D  R  Q  R  V  C  I  V  K  K  D  M  H  H  D  I  *  H  C  I  S  W  Y  C  T  F  L  L  L  M  N  L  N  M  Y  F  A  D  L  V  I  V  S  L  *  S  L  *  L  L  N  I  E  L  L  L  R  M  C  K  L  I  E  C  G  Y  *  V  V  C  L  V  N  C  *  D  V  A  W  R  F  R  *  A  *  G  V  P  I  F  C  S  L  N  L  C  L  E  V  C  L  L  G  T  A  W  F  G  T  H  P  L  L  L  Q  I  F  V  G  Y  E  P  G  F  L  *  Y  L  P  F  S  S </first_frame>
            <second_frame>  L  H  C  I  *  D  M  I  V  V  *  G  C  I  I  S  R  I  V  S  R  A  A  M  D  I  I  F  R  G  T  Y  R  A  P  R  W  L  L  L  S  R  V  M  S  C  A  A  T  D  V  W  T  D  M  S  P  M  D  P  G  L  I  D  S  G  C  V  S  L  R  K  T  C  I  T  I  F  D  I  A  S  H  G  I  A  H  F  Y  Y  *  *  T  *  T  C  I  L  L  I  L  *  L  F  L  C  E  A  C  D  C  *  I  L  S  C  Y  *  E  C  V  N  *  *  S  V  V  I  E  W  C  V  W  *  T  V  R  M  *  R  G  G  L  D  R  R  K  E  Y  P  Y  F  V  H  L  T  C  V  *  R  F  A  C  W  V  P  R  G  L  V  L  T  P  C  F  Y  K  F  L  *  V  T  S  P  D  F  C  D  T  F  H  S  L   </second_frame>
            <third_frame>   C  I  V  S  E  T  *  L  W  Y  K  D  V  S  F  R  G  S  Y  R  A  P  R  W  I  L  Y  F  E  G  R  I  A  R  R  D  G  Y  Y  Y  R  G  S  C  R  A  P  R  Q  M  Y  G  Q  I  C  P  P  W  I  P  D  *  *  T  A  G  V  Y  R  *  E  R  H  A  S  R  Y  L  T  L  H  L  M  V  L  H  I  F  I  I  D  E  L  E  H  V  F  C  *  S  C  D  C  F  S  V  K  L  V  T  V  E  Y  *  V  V  I  E  N  V  *  T  D  R  V  W  L  L  S  G  V  F  G  K  L  L  G  C  S  V  E  V  *  I  G  V  R  S  T  H  I  L  F  T  *  L  V  F  R  G  L  L  V  G  Y  R  V  V  W  Y  S  P  L  A  S  T  N  F  C  R  L  R  A  R  I  F  V  I  P  S  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38455" stop="38216"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCIISRIVSRAAMDIIFRGTYRAPRWLLLSRVMSCAATDVWTDMSPMDPGLIDSGCVSLRKTCITIFDIASHGIAHFYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38489" stop="38253"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IALYLRHDCGIRMYHFEDRIARRDGYYISRDVSRAAMVTIIEGHVVRRDRCMDRYVPHGSRTDRQRVCIVKKDMHHDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="67277" PGL_stop="67995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67277" e_stop="67995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="67277" e_stop="67995" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67277" stop="67995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67491" stop="67951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTCTTGGAATGAAGACTTGGTCTTCGTAGCAGCTGAACCATTTACAGAGAACCACTTGCTATTTTTCCTAATAGAAACGGACAGAACTGCGAAAGAGCAAACCGTCCTTGCAGTTGCTAGCATACCCCTCCCTACAATCGAGCGTCGAGTAGATGACCGTAAGGTGGCGTCTAGATGGTTCACATTTGAAGATCCTAACGAGGAGAAGAGAATTTACAAAGGTAGAGTCCACTTGCGCCTCTGTTTCGATGGTGGATATCATGTGATGGACGAAGCAGCACATGTTTGTAGTGATTACCGTCCAACTGCAAGGCAACTATGGAAAGCACCAATTGGGACTGTCGAATTAGGGATAATTGGATGTAAGAATCTGTTGCCCATGAAAGGCAAAGGGTCTACGGATGCTTATGCAGTTGCCAAATATGGTAACAAGTGGGTACGCACTCGTACCATATCTGATAGTTTAGAACCTAGGTGGAATGAGCAGTACACTTGGAGAGTTTATGATCCATCCACTGTGTTGACTATCGGAGTATTTGATGGCTGCTCGGAAGTAGCATTTGAATCAGATGAGTGCATGAGGCCAGATTTTCGGATTGGTAAGGTGCGTGTCCGTATTTCTACATTGACAACAGGTAAAGTGTACAGGAATACTTTCCCATTACTTTTGTTATCACAAACTGGTTTGAAGAAAATGGGGGAAATTGAATTAGCAG</gDNA_template>
            <first_frame> S  V  L  E  *  R  L  G  L  R  S  S  *  T  I  Y  R  E  P  L  A  I  F  P  N  R  N  G  Q  N  C  E  R  A  N  R  P  C  S  C  *  H  T  P  P  Y  N  R  A  S  S  R  *  P  *  G  G  V  *  M  V  H  I  *  R  S  *  R  G  E  E  N  L  Q  R  *  S  P  L  A  P  L  F  R  W  W  I  S  C  D  G  R  S  S  T  C  L  *  *  L  P  S  N  C  K  A  T  M  E  S  T  N  W  D  C  R  I  R  D  N  W  M  *  E  S  V  A  H  E  R  Q  R  V  Y  G  C  L  C  S  C  Q  I  W  *  Q  V  G  T  H  S  Y  H  I  *  *  F  R  T  *  V  E  *  A  V  H  L  E  S  L  *  S  I  H  C  V  D  Y  R  S  I  *  W  L  L  G  S  S  I  *  I  R  *  V  H  E  A  R  F  S  D  W  *  G  A  C  P  Y  F  Y  I  D  N  R  *  S  V  Q  E  Y  F  P  I  T  F  V  I  T  N  W  F  E  E  N  G  G  N  *  I  S   </first_frame>
            <second_frame>  Q  S  W  N  E  D  L  V  F  V  A  A  E  P  F  T  E  N  H  L  L  F  F  L  I  E  T  D  R  T  A  K  E  Q  T  V  L  A  V  A  S  I  P  L  P  T  I  E  R  R  V  D  D  R  K  V  A  S  R  W  F  T  F  E  D  P  N  E  E  K  R  I  Y  K  G  R  V  H  L  R  L  C  F  D  G  G  Y  H  V  M  D  E  A  A  H  V  C  S  D  Y  R  P  T  A  R  Q  L  W  K  A  P  I  G  T  V  E  L  G  I  I  G  C  K  N  L  L  P  M  K  G  K  G  S  T  D  A  Y  A  V  A  K  Y  G  N  K  W  V  R  T  R  T  I  S  D  S  L  E  P  R  W  N  E  Q  Y  T  W  R  V  Y  D  P  S  T  V  L  T  I  G  V  F  D  G  C  S  E  V  A  F  E  S  D  E  C  M  R  P  D  F  R  I  G  K  V  R  V  R  I  S  T  L  T  T  G  K  V  Y  R  N  T  F  P  L  L  L  L  S  Q  T  G  L  K  K  M  G  E  I  E  L  A  </second_frame>
            <third_frame>   S  L  G  M  K  T  W  S  S  *  Q  L  N  H  L  Q  R  T  T  C  Y  F  S  *  *  K  R  T  E  L  R  K  S  K  P  S  L  Q  L  L  A  Y  P  S  L  Q  S  S  V  E  *  M  T  V  R  W  R  L  D  G  S  H  L  K  I  L  T  R  R  R  E  F  T  K  V  E  S  T  C  A  S  V  S  M  V  D  I  M  *  W  T  K  Q  H  M  F  V  V  I  T  V  Q  L  Q  G  N  Y  G  K  H  Q  L  G  L  S  N  *  G  *  L  D  V  R  I  C  C  P  *  K  A  K  G  L  R  M  L  M  Q  L  P  N  M  V  T  S  G  Y  A  L  V  P  Y  L  I  V  *  N  L  G  G  M  S  S  T  L  G  E  F  M  I  H  P  L  C  *  L  S  E  Y  L  M  A  A  R  K  *  H  L  N  Q  M  S  A  *  G  Q  I  F  G  L  V  R  C  V  S  V  F  L  H  *  Q  Q  V  K  C  T  G  I  L  S  H  Y  F  C  Y  H  K  L  V  *  R  K  W  G  K  L  N  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67278" stop="67994"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSWNEDLVFVAAEPFTENHLLFFLIETDRTAKEQTVLAVASIPLPTIERRVDDRKVASRWFTFEDPNEEKRIYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKAPIGTVELGIIGCKNLLPMKGKGSTDAYAVAKYGNKWVRTRTISDSLEPRWNEQYTWRVYDPSTVLTIGVFDGCSEVAFESDECMRPDFRIGKVRVRISTLTTGKVYRNTFPLLLLSQTGLKKMGEIELA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="69035" PGL_stop="68450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69035" e_stop="68450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="69035" e_stop="68450" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69035" stop="68450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69035" stop="68450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCAATGATAATAGTTACTTATGGACTAATACAGTTATGGAAATTAATATTGAAATACATAGTGACCTTTCTGAGATGACATATATAGAAATGAAAAAAAAAAACTTCTGAACTATTATAACATAAAAATAGGCTAATGCACAGCACAAGCGCGAGTATATTTACTAGTACTTAAATAGAACTAGAGCATTCTGTCTGAAAGTGAAGGCAACCTTCTAAAGAAATTCAAAGCAGGGGAAGGCATTCTATCCCTAAATATGGGATGGCGGAGGTAGTAGAATCCAAAGGCCATAGACACCATTTTAGATGGTACCAAGTATAAAATGAATGCCACGACAAAGCACAGCCCAATAAATATCCCTGTGGCTCGAGGGTCACGCCAAGTTACCAATGCTTGCACTCTCTCCCCTTGTGTTGCGAAATCTCCCAAGATTGTCTGAACCCGTTCCCCAAGCATGCGCAGTTTATCATATCTGGCTCGTACCAATTCGTTAGGTCTAGTGCAAGGCATTGCATCAAACTCTTCATCAAGCTCATCTCTGTCTAGTGACTCTGCCAGTGAGATCTTTGGATCAAAGTGGGGT</gDNA_template>
            <first_frame> F  S  M  I  I  V  T  Y  G  L  I  Q  L  W  K  L  I  L  K  Y  I  V  T  F  L  R  *  H  I  *  K  *  K  K  K  T  S  E  L  L  *  H  K  N  R  L  M  H  S  T  S  A  S  I  F  T  S  T  *  I  E  L  E  H  S  V  *  K  *  R  Q  P  S  K  E  I  Q  S  R  G  R  H  S  I  P  K  Y  G  M  A  E  V  V  E  S  K  G  H  R  H  H  F  R  W  Y  Q  V  *  N  E  C  H  D  K  A  Q  P  N  K  Y  P  C  G  S  R  V  T  P  S  Y  Q  C  L  H  S  L  P  L  C  C  E  I  S  Q  D  C  L  N  P  F  P  K  H  A  Q  F  I  I  S  G  S  Y  Q  F  V  R  S  S  A  R  H  C  I  K  L  F  I  K  L  I  S  V  *  *  L  C  Q  *  D  L  W  I  K  V  G  </first_frame>
            <second_frame>  S  Q  *  *  *  L  L  M  D  *  Y  S  Y  G  N  *  Y  *  N  T  *  *  P  F  *  D  D  I  Y  R  N  E  K  K  K  L  L  N  Y  Y  N  I  K  I  G  *  C  T  A  Q  A  R  V  Y  L  L  V  L  K  *  N  *  S  I  L  S  E  S  E  G  N  L  L  K  K  F  K  A  G  E  G  I  L  S  L  N  M  G  W  R  R  *  *  N  P  K  A  I  D  T  I  L  D  G  T  K  Y  K  M  N  A  T  T  K  H  S  P  I  N  I  P  V  A  R  G  S  R  Q  V  T  N  A  C  T  L  S  P  C  V  A  K  S  P  K  I  V  *  T  R  S  P  S  M  R  S  L  S  Y  L  A  R  T  N  S  L  G  L  V  Q  G  I  A  S  N  S  S  S  S  S  S  L  S  S  D  S  A  S  E  I  F  G  S  K  W  G </second_frame>
            <third_frame>   L  N  D  N  S  Y  L  W  T  N  T  V  M  E  I  N  I  E  I  H  S  D  L  S  E  M  T  Y  I  E  M  K  K  K  N  F  *  T  I  I  T  *  K  *  A  N  A  Q  H  K  R  E  Y  I  Y  *  Y  L  N  R  T  R  A  F  C  L  K  V  K  A  T  F  *  R  N  S  K  Q  G  K  A  F  Y  P  *  I  W  D  G  G  G  S  R  I  Q  R  P  *  T  P  F  *  M  V  P  S  I  K  *  M  P  R  Q  S  T  A  Q  *  I  S  L  W  L  E  G  H  A  K  L  P  M  L  A  L  S  P  L  V  L  R  N  L  P  R  L  S  E  P  V  P  Q  A  C  A  V  Y  H  I  W  L  V  P  I  R  *  V  *  C  K  A  L  H  Q  T  L  H  Q  A  H  L  C  L  V  T  L  P  V  R  S  L  D  Q  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68711" stop="68487"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NECHDKAQPNKYPCGSRVTPSYQCLHSLPLCCEISQDCLNPFPKHAQFIISGSYQFVRSSARHCIKLFIKLISV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="73641" PGL_stop="74071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73641" e_stop="74071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="73641" e_stop="74071" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73641" stop="74071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTAAATAATTTAGGAGCAATTCATAACATACGTCTCTCTTCATAAATAAGTATCGAGTACATGTACAAAAACTATCTATATTTGTTCGGACTCTTCAGAAATGTCGCCAAGTTTATTGGGTTTTCCATTAGTGAAGTTTTGGAGGATCCCACATGGGTGCAACAATAACTTCAAAGAGTTTGAGCATCATAAGAAGCTAAATAGATATCACTTGTCGAACCCCTATTCAGCTTTCTAGGGAGGACAATGGCGGTGTCTCTGAATTTATCCAAGTTGACGACATGTATAAATGTCTCTCACCTTTGACAACATCGCCAGAGGTATACGATTCGAGTTCTTTCATGTCTTCCTCTGTCAATTTTACAGATAAGGATCCTACGTTTTCGTTGAAGTTTCCAATCTTCGTAGTGCCTGGTATAGGGCATACA</gDNA_template>
            <first_frame> Q  L  N  N  L  G  A  I  H  N  I  R  L  S  S  *  I  S  I  E  Y  M  Y  K  N  Y  L  Y  L  F  G  L  F  R  N  V  A  K  F  I  G  F  S  I  S  E  V  L  E  D  P  T  W  V  Q  Q  *  L  Q  R  V  *  A  S  *  E  A  K  *  I  S  L  V  E  P  L  F  S  F  L  G  R  T  M  A  V  S  L  N  L  S  K  L  T  T  C  I  N  V  S  H  L  *  Q  H  R  Q  R  Y  T  I  R  V  L  S  C  L  P  L  S  I  L  Q  I  R  I  L  R  F  R  *  S  F  Q  S  S  *  C  L  V  *  G  I   </first_frame>
            <second_frame>  S  *  I  I  *  E  Q  F  I  T  Y  V  S  L  H  K  *  V  S  S  T  C  T  K  T  I  Y  I  C  S  D  S  S  E  M  S  P  S  L  L  G  F  P  L  V  K  F  W  R  I  P  H  G  C  N  N  N  F  K  E  F  E  H  H  K  K  L  N  R  Y  H  L  S  N  P  Y  S  A  F  *  G  G  Q  W  R  C  L  *  I  Y  P  S  *  R  H  V  *  M  S  L  T  F  D  N  I  A  R  G  I  R  F  E  F  F  H  V  F  L  C  Q  F  Y  R  *  G  S  Y  V  F  V  E  V  S  N  L  R  S  A  W  Y  R  A  Y  </second_frame>
            <third_frame>   V  K  *  F  R  S  N  S  *  H  T  S  L  F  I  N  K  Y  R  V  H  V  Q  K  L  S  I  F  V  R  T  L  Q  K  C  R  Q  V  Y  W  V  F  H  *  *  S  F  G  G  S  H  M  G  A  T  I  T  S  K  S  L  S  I  I  R  S  *  I  D  I  T  C  R  T  P  I  Q  L  S  R  E  D  N  G  G  V  S  E  F  I  Q  V  D  D  M  Y  K  C  L  S  P  L  T  T  S  P  E  V  Y  D  S  S  S  F  M  S  S  S  V  N  F  T  D  K  D  P  T  F  S  L  K  F  P  I  F  V  V  P  G  I  G  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73844" stop="74071"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDITCRTPIQLSREDNGGVSEFIQVDDMYKCLSPLTTSPEVYDSSSFMSSSVNFTDKDPTFSLKFPIFVVPGIGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76977" PGL_stop="75702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76977" e_stop="76745"/>
            <exon e_start="76501" e_stop="76304"/>
            <exon e_start="75713" e_stop="75702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76977" e_stop="76745" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="76744" i_stop="76502" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76501" e_stop="76304" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.530">
            <gDNA_intron_boundary i_start="76303" i_stop="75714" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75713" e_stop="75702" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76977" stop="76745"/>
              <exon start="76501" stop="76304"/>
              <exon start="75713" stop="75702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76976" stop="76751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATGGAAGTAACGACGCCGTTCGACGTTCCGAGGATAAAGCTAGGTTCACAAGGTCTAGAAGTTTCCAGGATCGGGCTGGGCTGTATGAGTATGTCCGGTAACTACGGCCCGCCCAAGCCCGAGGCCGAAATGATCAAGCTACTTCATCACGCTATTGATACTGGAGTCACCTTACTCGATACTTCTGATGTCTATGGCCCTCTTACTAATGAAATACTCATCGGCAAG : GCTATTAAAGGAATAAGAGAGAAAGTACAAATAGCTACCAAGTTTGGTATCCGTTTTGAAGATGGAAATAGGGGCATTTGTGGTGAACCTGCGTATGTAAGGGCTTGTTGTGAGGCCAGCTTGAAGAGACTTGATATCGACTGCATTGATCTCTATTATGTTCATCGCATCGATACTCAGTTGCCAATTGAAGTCACG : ATGGGAGAACTG</gDNA_template>
            <first_frame> R  K  W  K  *  R  R  R  S  T  F  R  G  *  S  *  V  H  K  V  *  K  F  P  G  S  G  W  A  V  *  V  C  P  V  T  T  A  R  P  S  P  R  P  K  *  S  S  Y  F  I  T  L  L  I  L  E  S  P  Y  S  I  L  L  M  S  M  A  L  L  L  M  K  Y  S  S  A  R :   L  L  K  E  *  E  R  K  Y  K  *  L  P  S  L  V  S  V  L  K  M  E  I  G  A  F  V  V  N  L  R  M  *  G  L  V  V  R  P  A  *  R  D  L  I  S  T  A  L  I  S  I  M  F  I  A  S  I  L  S  C  Q  L  K  S  R :   W  E  N   </first_frame>
            <second_frame>  E  N  G  S  N  D  A  V  R  R  S  E  D  K  A  R  F  T  R  S  R  S  F  Q  D  R  A  G  L  Y  E  Y  V  R  *  L  R  P  A  Q  A  R  G  R  N  D  Q  A  T  S  S  R  Y  *  Y  W  S  H  L  T  R  Y  F  *  C  L  W  P  S  Y  *  *  N  T  H  R  Q   : G  Y  *  R  N  K  R  E  S  T  N  S  Y  Q  V  W  Y  P  F  *  R  W  K  *  G  H  L  W  *  T  C  V  C  K  G  L  L  *  G  Q  L  E  E  T  *  Y  R  L  H  *  S  L  L  C  S  S  H  R  Y  S  V  A  N  *  S  H   : D  G  R  T  </second_frame>
            <third_frame>   K  M  E  V  T  T  P  F  D  V  P  R  I  K  L  G  S  Q  G  L  E  V  S  R  I  G  L  G  C  M  S  M  S  G  N  Y  G  P  P  K  P  E  A  E  M  I  K  L  L  H  H  A  I  D  T  G  V  T  L  L  D  T  S  D  V  Y  G  P  L  T  N  E  I  L  I  G  K  :  A  I  K  G  I  R  E  K  V  Q  I  A  T  K  F  G  I  R  F  E  D  G  N  R  G  I  C  G  E  P  A  Y  V  R  A  C  C  E  A  S  L  K  R  L  D  I  D  C  I  D  L  Y  Y  V  H  R  I  D  T  Q  L  P  I  E  V  T  :  M  G  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76975" stop="76745"/>
                    <exon start="76501" stop="76304"/>
                    <exon start="75713" stop="75702"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVTTPFDVPRIKLGSQGLEVSRIGLGCMSMSGNYGPPKPEAEMIKLLHHAIDTGVTLLDTSDVYGPLTNEILIGKAIKGIREKVQIATKFGIRFEDGNRGICGEPAYVRACCEASLKRLDIDCIDLYYVHRIDTQLPIEVTMGEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="104746" PGL_stop="101842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104746" e_stop="104234"/>
            <exon e_start="103515" e_stop="101842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104746" e_stop="104234" e_length="513"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.929">
            <gDNA_intron_boundary i_start="104233" i_stop="103516" i_length="718"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="103515" e_stop="101842" e_length="1674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104746" stop="104234"/>
              <exon start="103515" stop="103230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104262" stop="104234"/>
              <exon start="103515" stop="102860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103463" stop="102853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103139" stop="102382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102948" stop="102148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102618" stop="101842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102593" stop="101842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739269" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102592" stop="102249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACATTTTTCTCTCTCTTTCTCCTAATCATCACCGTCGCCGGACAAACAACTCCGATGGCTGAAGCTCCGGCACCGGCAGCCGACGACTGTAACGGTATATTCTTGCAGTATGTGTTTAATTCCGGATCTAAAATCAAACCCACTTTGAAAACTCGTCAACCCTACAAGTTTCAGTCTATTCTCAGTATAACTAACAACGGACTTGAGGAACTTAAGTTATGGAGGGTTTTTGTTGGGTTTCAACATGATGAGATTTTGGTTTCTGCTTCTAACGCTCTGCTTGCTGATGGGGAATCATTTCCTGCTTTAGTTGGTAATGGTACTGTTTTTGCTGGATTTCCGGCTGCCGATCTTAAGACAGCTGTGGAAACTGCTGGAGATACTACACAGACGAGTGTTCAAATCAAAATTGTGGGTACCCAGTTTGGAGTTGGCTCTCCTAATGTACCTATGCCCTCCAATATCTCTTTGGAAAATGATGGGTTTATTTGCCCTAAACCCTCTATGCAAG : GAAAGAGTGTTATGCAAGTATGCTGTATTAAAGACGAAAATTTCAAGACAAATTTGACGTTGGGTGAGAAATTTAGTCCACGCCAAGATGGGGATCTTACAATTATGTATGATATCCTAAGAACATATGATTCAAATTACTGGGCTCAGGTTACCATTGCAAACCATAATCCCCTTGGTCGCCTTGATAACTGGAAACTAAGTTGGGACTGGATGAAGGATGAGTTTATTTGGGAAATGAAAGGCGCATATCCCTCTGTTGTTGATACTTCTGAGTGTGTTTTTGGGCCACAGGCAAAATTTTATCAAAACCTTGACTTTTCCACTGGTTTGAACTGTCAGAGAAGGCCGACACTAATTGATCTGCCGCTGGAGAAGACCAATGATACAAAGTTGGGAATGATACCTTTTTGTTGTCGGAATGGGACAATCTTGCCACCTGCTATGGACCCAAGCAAGTCTGTTTCAGCATTCCAGATGAATGTCTTTAAAATGCCTCCAGATCTTAATCGATCCTCATTCACTCCTCCACAGAATTGGAAGATCGAAGGCAGACTGAATCCAGATTACAAGTGTGGACCTCCAGTCCGTGTAAGCCCCACCCAAGTCCCTGATCCTAGTGGATTGTTACCTGCTACATCAGTATTTGCTAGCTGGCAAGTTGTATGCAACATCACCCAACCAAAAGGAGCTAGCCCCAGATGCTGTGTTTCTTTCTCTGCTTTCTACAATGAATCTATCATTCCTTGTCCAACATGCGCCTGTGGTTGTCCTTCCAATACTGCTCGTACATGTAGCACGAAAGCCCCAGCTCTTCTCCTCCCATCTCAGGCTCTTCTGGTTCCATTTGACAATAGAACCAAGATGTCCCTTGCCTGGGCTGAAATTAATCATCTTCCAGTTTCAAACCCATTGCCATGTGGAGATAACTGTGGTGTAAGCATCAACTGGCATTTGTTCACAGACTATAGGGGTGGATGGTCTGCCAGGATCACCATCTTCAACTGGGAGGATGCTGCTTTTGCTGATTGGTTCACTGCGGTGGAATTGGACAAAGCAGCGGCTGGTTTTGACGCAGTGTATTCATTCAATGGAACTATGTTAGATGGGGTTAATAATACCATATTCATGCAGGGCCTTCCAGGCTTGAACTATATAGTAGCAGAAGCAGATGGAGCTAATCCAGCGAAAGATCCCCGAGTACCTGGGAAACAACAATCAGTAATCTCATTCACAAAGAAGAATATCCCAAACATCAACGTTGCTGCTGGTGATGGGTTTCCAACAAAATTATACTTCAATGGAGAAGAGTGCTCATTGCCAAAGCTACTCCCAACAAGCAGTTCATCTAGAATATCTTCATTCACTGTCACTACTTCCATTCTTGCAGCAGTTGTGGTTTTTATGTTGGTGCGACAATAGCAGTGAGCTGTGGCGTTTTCTCTTCGTTTCATACCTGCCAATTGATTCATTCTTTAGCGTCTGCTACCAGGTTTTAATGCTGGTGACCAATCTTTCAATCAGTTTGTCGGATTATGTATTCAGGGACGTGGGTTTTTCGGCGAGTTTTGATTTGTAACTATTTATTACACTCTGGAATTCTCATTCCAGACAATATTTGACTTTAAAGTTAATACCTGTTATATTAGCAGATAAGATAAGAATACCTCAGTTT</gDNA_template>
            <first_frame> Q  H  F  S  L  S  F  S  *  S  S  P  S  P  D  K  Q  L  R  W  L  K  L  R  H  R  Q  P  T  T  V  T  V  Y  S  C  S  M  C  L  I  P  D  L  K  S  N  P  L  *  K  L  V  N  P  T  S  F  S  L  F  S  V  *  L  T  T  D  L  R  N  L  S  Y  G  G  F  L  L  G  F  N  M  M  R  F  W  F  L  L  L  T  L  C  L  L  M  G  N  H  F  L  L  *  L  V  M  V  L  F  L  L  D  F  R  L  P  I  L  R  Q  L  W  K  L  L  E  I  L  H  R  R  V  F  K  S  K  L  W  V  P  S  L  E  L  A  L  L  M  Y  L  C  P  P  I  S  L  W  K  M  M  G  L  F  A  L  N  P  L  C  K  :  E  R  V  L  C  K  Y  A  V  L  K  T  K  I  S  R  Q  I  *  R  W  V  R  N  L  V  H  A  K  M  G  I  L  Q  L  C  M  I  S  *  E  H  M  I  Q  I  T  G  L  R  L  P  L  Q  T  I  I  P  L  V  A  L  I  T  G  N  *  V  G  T  G  *  R  M  S  L  F  G  K  *  K  A  H  I  P  L  L  L  I  L  L  S  V  F  L  G  H  R  Q  N  F  I  K  T  L  T  F  P  L  V  *  T  V  R  E  G  R  H  *  L  I  C  R  W  R  R  P  M  I  Q  S  W  E  *  Y  L  F  V  V  G  M  G  Q  S  C  H  L  L  W  T  Q  A  S  L  F  Q  H  S  R  *  M  S  L  K  C  L  Q  I  L  I  D  P  H  S  L  L  H  R  I  G  R  S  K  A  D  *  I  Q  I  T  S  V  D  L  Q  S  V  *  A  P  P  K  S  L  I  L  V  D  C  Y  L  L  H  Q  Y  L  L  A  G  K  L  Y  A  T  S  P  N  Q  K  E  L  A  P  D  A  V  F  L  S  L  L  S  T  M  N  L  S  F  L  V  Q  H  A  P  V  V  V  L  P  I  L  L  V  H  V  A  R  K  P  Q  L  F  S  S  H  L  R  L  F  W  F  H  L  T  I  E  P  R  C  P  L  P  G  L  K  L  I  I  F  Q  F  Q  T  H  C  H  V  E  I  T  V  V  *  A  S  T  G  I  C  S  Q  T  I  G  V  D  G  L  P  G  S  P  S  S  T  G  R  M  L  L  L  L  I  G  S  L  R  W  N  W  T  K  Q  R  L  V  L  T  Q  C  I  H  S  M  E  L  C  *  M  G  L  I  I  P  Y  S  C  R  A  F  Q  A  *  T  I  *  *  Q  K  Q  M  E  L  I  Q  R  K  I  P  E  Y  L  G  N  N  N  Q  *  S  H  S  Q  R  R  I  S  Q  T  S  T  L  L  L  V  M  G  F  Q  Q  N  Y  T  S  M  E  K  S  A  H  C  Q  S  Y  S  Q  Q  A  V  H  L  E  Y  L  H  S  L  S  L  L  P  F  L  Q  Q  L  W  F  L  C  W  C  D  N  S  S  E  L  W  R  F  L  F  V  S  Y  L  P  I  D  S  F  F  S  V  C  Y  Q  V  L  M  L  V  T  N  L  S  I  S  L  S  D  Y  V  F  R  D  V  G  F  S  A  S  F  D  L  *  L  F  I  T  L  W  N  S  H  S  R  Q  Y  L  T  L  K  L  I  P  V  I  L  A  D  K  I  R  I  P  Q  F </first_frame>
            <second_frame>  N  I  F  L  S  L  S  P  N  H  H  R  R  R  T  N  N  S  D  G  *  S  S  G  T  G  S  R  R  L  *  R  Y  I  L  A  V  C  V  *  F  R  I  *  N  Q  T  H  F  E  N  S  S  T  L  Q  V  S  V  Y  S  Q  Y  N  *  Q  R  T  *  G  T  *  V  M  E  G  F  C  W  V  S  T  *  *  D  F  G  F  C  F  *  R  S  A  C  *  W  G  I  I  S  C  F  S  W  *  W  Y  C  F  C  W  I  S  G  C  R  S  *  D  S  C  G  N  C  W  R  Y  Y  T  D  E  C  S  N  Q  N  C  G  Y  P  V  W  S  W  L  S  *  C  T  Y  A  L  Q  Y  L  F  G  K  *  W  V  Y  L  P  *  T  L  Y  A  R :   K  E  C  Y  A  S  M  L  Y  *  R  R  K  F  Q  D  K  F  D  V  G  *  E  I  *  S  T  P  R  W  G  S  Y  N  Y  V  *  Y  P  K  N  I  *  F  K  L  L  G  S  G  Y  H  C  K  P  *  S  P  W  S  P  *  *  L  E  T  K  L  G  L  D  E  G  *  V  Y  L  G  N  E  R  R  I  S  L  C  C  *  Y  F  *  V  C  F  W  A  T  G  K  I  L  S  K  P  *  L  F  H  W  F  E  L  S  E  K  A  D  T  N  *  S  A  A  G  E  D  Q  *  Y  K  V  G  N  D  T  F  L  L  S  E  W  D  N  L  A  T  C  Y  G  P  K  Q  V  C  F  S  I  P  D  E  C  L  *  N  A  S  R  S  *  S  I  L  I  H  S  S  T  E  L  E  D  R  R  Q  T  E  S  R  L  Q  V  W  T  S  S  P  C  K  P  H  P  S  P  *  S  *  W  I  V  T  C  Y  I  S  I  C  *  L  A  S  C  M  Q  H  H  P  T  K  R  S  *  P  Q  M  L  C  F  F  L  C  F  L  Q  *  I  Y  H  S  L  S  N  M  R  L  W  L  S  F  Q  Y  C  S  Y  M  *  H  E  S  P  S  S  S  P  P  I  S  G  S  S  G  S  I  *  Q  *  N  Q  D  V  P  C  L  G  *  N  *  S  S  S  S  F  K  P  I  A  M  W  R  *  L  W  C  K  H  Q  L  A  F  V  H  R  L  *  G  W  M  V  C  Q  D  H  H  L  Q  L  G  G  C  C  F  C  *  L  V  H  C  G  G  I  G  Q  S  S  G  W  F  *  R  S  V  F  I  Q  W  N  Y  V  R  W  G  *  *  Y  H  I  H  A  G  P  S  R  L  E  L  Y  S  S  R  S  R  W  S  *  S  S  E  R  S  P  S  T  W  E  T  T  I  S  N  L  I  H  K  E  E  Y  P  K  H  Q  R  C  C  W  *  W  V  S  N  K  I  I  L  Q  W  R  R  V  L  I  A  K  A  T  P  N  K  Q  F  I  *  N  I  F  I  H  C  H  Y  F  H  S  C  S  S  C  G  F  Y  V  G  A  T  I  A  V  S  C  G  V  F  S  S  F  H  T  C  Q  L  I  H  S  L  A  S  A  T  R  F  *  C  W  *  P  I  F  Q  S  V  C  R  I  M  Y  S  G  T  W  V  F  R  R  V  L  I  C  N  Y  L  L  H  S  G  I  L  I  P  D  N  I  *  L  *  S  *  Y  L  L  Y  *  Q  I  R  *  E  Y  L  S   </second_frame>
            <third_frame>   T  F  F  S  L  F  L  L  I  I  T  V  A  G  Q  T  T  P  M  A  E  A  P  A  P  A  A  D  D  C  N  G  I  F  L  Q  Y  V  F  N  S  G  S  K  I  K  P  T  L  K  T  R  Q  P  Y  K  F  Q  S  I  L  S  I  T  N  N  G  L  E  E  L  K  L  W  R  V  F  V  G  F  Q  H  D  E  I  L  V  S  A  S  N  A  L  L  A  D  G  E  S  F  P  A  L  V  G  N  G  T  V  F  A  G  F  P  A  A  D  L  K  T  A  V  E  T  A  G  D  T  T  Q  T  S  V  Q  I  K  I  V  G  T  Q  F  G  V  G  S  P  N  V  P  M  P  S  N  I  S  L  E  N  D  G  F  I  C  P  K  P  S  M  Q   : G  K  S  V  M  Q  V  C  C  I  K  D  E  N  F  K  T  N  L  T  L  G  E  K  F  S  P  R  Q  D  G  D  L  T  I  M  Y  D  I  L  R  T  Y  D  S  N  Y  W  A  Q  V  T  I  A  N  H  N  P  L  G  R  L  D  N  W  K  L  S  W  D  W  M  K  D  E  F  I  W  E  M  K  G  A  Y  P  S  V  V  D  T  S  E  C  V  F  G  P  Q  A  K  F  Y  Q  N  L  D  F  S  T  G  L  N  C  Q  R  R  P  T  L  I  D  L  P  L  E  K  T  N  D  T  K  L  G  M  I  P  F  C  C  R  N  G  T  I  L  P  P  A  M  D  P  S  K  S  V  S  A  F  Q  M  N  V  F  K  M  P  P  D  L  N  R  S  S  F  T  P  P  Q  N  W  K  I  E  G  R  L  N  P  D  Y  K  C  G  P  P  V  R  V  S  P  T  Q  V  P  D  P  S  G  L  L  P  A  T  S  V  F  A  S  W  Q  V  V  C  N  I  T  Q  P  K  G  A  S  P  R  C  C  V  S  F  S  A  F  Y  N  E  S  I  I  P  C  P  T  C  A  C  G  C  P  S  N  T  A  R  T  C  S  T  K  A  P  A  L  L  L  P  S  Q  A  L  L  V  P  F  D  N  R  T  K  M  S  L  A  W  A  E  I  N  H  L  P  V  S  N  P  L  P  C  G  D  N  C  G  V  S  I  N  W  H  L  F  T  D  Y  R  G  G  W  S  A  R  I  T  I  F  N  W  E  D  A  A  F  A  D  W  F  T  A  V  E  L  D  K  A  A  A  G  F  D  A  V  Y  S  F  N  G  T  M  L  D  G  V  N  N  T  I  F  M  Q  G  L  P  G  L  N  Y  I  V  A  E  A  D  G  A  N  P  A  K  D  P  R  V  P  G  K  Q  Q  S  V  I  S  F  T  K  K  N  I  P  N  I  N  V  A  A  G  D  G  F  P  T  K  L  Y  F  N  G  E  E  C  S  L  P  K  L  L  P  T  S  S  S  S  R  I  S  S  F  T  V  T  T  S  I  L  A  A  V  V  V  F  M  L  V  R  Q  *  Q  *  A  V  A  F  S  L  R  F  I  P  A  N  *  F  I  L  *  R  L  L  P  G  F  N  A  G  D  Q  S  F  N  Q  F  V  G  L  C  I  Q  G  R  G  F  F  G  E  F  *  F  V  T  I  Y  Y  T  L  E  F  S  F  Q  T  I  F  D  F  K  V  N  T  C  Y  I  S  R  *  D  K  N  T  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104744" stop="104234"/>
                    <exon start="103515" stop="102095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1929</number_coding_nucleotides>
                  <number_encoded_amino_acids>643</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFSLFLLIITVAGQTTPMAEAPAPAADDCNGIFLQYVFNSGSKIKPTLKTRQPYKFQSILSITNNGLEELKLWRVFVGFQHDEILVSASNALLADGESFPALVGNGTVFAGFPAADLKTAVETAGDTTQTSVQIKIVGTQFGVGSPNVPMPSNISLENDGFICPKPSMQGKSVMQVCCIKDENFKTNLTLGEKFSPRQDGDLTIMYDILRTYDSNYWAQVTIANHNPLGRLDNWKLSWDWMKDEFIWEMKGAYPSVVDTSECVFGPQAKFYQNLDFSTGLNCQRRPTLIDLPLEKTNDTKLGMIPFCCRNGTILPPAMDPSKSVSAFQMNVFKMPPDLNRSSFTPPQNWKIEGRLNPDYKCGPPVRVSPTQVPDPSGLLPATSVFASWQVVCNITQPKGASPRCCVSFSAFYNESIIPCPTCACGCPSNTARTCSTKAPALLLPSQALLVPFDNRTKMSLAWAEINHLPVSNPLPCGDNCGVSINWHLFTDYRGGWSARITIFNWEDAAFADWFTAVELDKAAAGFDAVYSFNGTMLDGVNNTIFMQGLPGLNYIVAEADGANPAKDPRVPGKQQSVISFTKKNIPNINVAAGDGFPTKLYFNGEECSLPKLLPTSSSSRISSFTVTTSILAAVVVFMLVRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="109554" PGL_stop="109198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109554" e_stop="109368"/>
            <exon e_start="109335" e_stop="109198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="109554" e_stop="109368" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109367" i_stop="109336" i_length="32"/>
          </intron>
          <exon e_serial="2" e_score="0.893">
            <gDNA_exon_boundary e_start="109335" e_stop="109198" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109554" stop="109368"/>
              <exon start="109335" stop="109198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109554" stop="109368"/>
              <exon start="109335" stop="109215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAATCTAGAGAAAACTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT : GAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATGTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTTATACACTTCTGTATATAAACCGAGAGTG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  I  *  R  K  L  Y  F  T  T  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I   : *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  M  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  F  I  H  F  C  I  *  T  E  S  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  S  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  :  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  C  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  L  Y  T  S  V  Y  K  P  R  V </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  N  L  E  K  T  V  F  H  Y  N  C  I  I  R  N  C  I  I  R  W  P  F  S  L  Q  Y  L :   K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  V  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  Y  T  L  L  Y  I  N  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0023H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="133167" PGL_stop="134050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133167" e_stop="134050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="133167" e_stop="134050" e_length="884"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133167" stop="133741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133175" stop="134050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTCCCATTTCCATTTTCCATTTTCCATTTTTCACTAACACTACACTCTCAACTCATTCTTCTCTACTCAAAATTTTATCAAAAATGGGAGTGATGTTAGCTTTTTCGATCCTCATAATCACTATGATGATAACGGGTATGCAAAATGAGGGTAATTTGGTAAATGCCAATGAAACAACTTGGGCAGGTTCAAAGTATCAGATTGAATGTACAATGTGTGCCGCATGTGACAACCCTTGCGCCACCCCATCTCCGCCGCCGCCTCAGCCGCCGTCGCCTCCTCCACCGCCTTCTACCTCTTATAATTGTCCTCCTCCACCCTCTCCTCCTAGTTCCGGGGGAAATTACTACTACTCTCCACCGCCACCACCGCCTTCCTCCTCCGGCGGCGGCGGCGGCGGTAATTACTACTATTCACCACCTCCACCTTACCAAAATTACCCTTCTGGACCTACTCCTCCACCTCCGAATCCAATTGTTCCGTATTTTCCATTCTACTTTTACAATCCTCCACCGCCTTCACAGTCTGCTGCTATTAAGCTCACTGATTTTTCACCCAAATCTTCTATTTTCTTTACGGTGTTCATTGCGTTGTTGATTTTCCATTGAAATTAATGGGGGGAAATTAAATAAAGTGTCTGGAATCGCACAGATCTACAAATGAGAGCAAAGATATTGAAGAAAAATTGGAAAGCTGTCTTGTTTCTCTCATCTTCTGTAAAATTCTTGACCATTCTTCTTATTATATTCTCCTGTAATTTTAGTTTAACTTAAATTCATATTCGTATAGAATGTAACAAAACTTTAGTCATTTTTGTAACAATTATAAACTCAACTTCTCATTCATATTCTATATATTTTCACTGCAATTTTATTGCTTTT</gDNA_template>
            <first_frame> P  F  P  F  P  F  S  I  F  H  F  S  L  T  L  H  S  Q  L  I  L  L  Y  S  K  F  Y  Q  K  W  E  *  C  *  L  F  R  S  S  *  S  L  *  *  *  R  V  C  K  M  R  V  I  W  *  M  P  M  K  Q  L  G  Q  V  Q  S  I  R  L  N  V  Q  C  V  P  H  V  T  T  L  A  P  P  H  L  R  R  R  L  S  R  R  R  L  L  H  R  L  L  P  L  I  I  V  L  L  H  P  L  L  L  V  P  G  E  I  T  T  T  L  H  R  H  H  R  L  P  P  P  A  A  A  A  A  V  I  T  T  I  H  H  L  H  L  T  K  I  T  L  L  D  L  L  L  H  L  R  I  Q  L  F  R  I  F  H  S  T  F  T  I  L  H  R  L  H  S  L  L  L  L  S  S  L  I  F  H  P  N  L  L  F  S  L  R  C  S  L  R  C  *  F  S  I  E  I  N  G  G  K  L  N  K  V  S  G  I  A  Q  I  Y  K  *  E  Q  R  Y  *  R  K  I  G  K  L  S  C  F  S  H  L  L  *  N  S  *  P  F  F  L  L  Y  S  P  V  I  L  V  *  L  K  F  I  F  V  *  N  V  T  K  L  *  S  F  L  *  Q  L  *  T  Q  L  L  I  H  I  L  Y  I  F  T  A  I  L  L  L   </first_frame>
            <second_frame>  P  S  H  F  H  F  P  F  S  I  F  H  *  H  Y  T  L  N  S  F  F  S  T  Q  N  F  I  K  N  G  S  D  V  S  F  F  D  P  H  N  H  Y  D  D  N  G  Y  A  K  *  G  *  F  G  K  C  Q  *  N  N  L  G  R  F  K  V  S  D  *  M  Y  N  V  C  R  M  *  Q  P  L  R  H  P  I  S  A  A  A  S  A  A  V  A  S  S  T  A  F  Y  L  L  *  L  S  S  S  T  L  S  S  *  F  R  G  K  L  L  L  L  S  T  A  T  T  A  F  L  L  R  R  R  R  R  R  *  L  L  L  F  T  T  S  T  L  P  K  L  P  F  W  T  Y  S  S  T  S  E  S  N  C  S  V  F  S  I  L  L  L  Q  S  S  T  A  F  T  V  C  C  Y  *  A  H  *  F  F  T  Q  I  F  Y  F  L  Y  G  V  H  C  V  V  D  F  P  L  K  L  M  G  G  N  *  I  K  C  L  E  S  H  R  S  T  N  E  S  K  D  I  E  E  K  L  E  S  C  L  V  S  L  I  F  C  K  I  L  D  H  S  S  Y  Y  I  L  L  *  F  *  F  N  L  N  S  Y  S  Y  R  M  *  Q  N  F  S  H  F  C  N  N  Y  K  L  N  F  S  F  I  F  Y  I  F  S  L  Q  F  Y  C  F  </second_frame>
            <third_frame>   L  P  I  S  I  F  H  F  P  F  F  T  N  T  T  L  S  T  H  S  S  L  L  K  I  L  S  K  M  G  V  M  L  A  F  S  I  L  I  I  T  M  M  I  T  G  M  Q  N  E  G  N  L  V  N  A  N  E  T  T  W  A  G  S  K  Y  Q  I  E  C  T  M  C  A  A  C  D  N  P  C  A  T  P  S  P  P  P  P  Q  P  P  S  P  P  P  P  P  S  T  S  Y  N  C  P  P  P  P  S  P  P  S  S  G  G  N  Y  Y  Y  S  P  P  P  P  P  P  S  S  S  G  G  G  G  G  G  N  Y  Y  Y  S  P  P  P  P  Y  Q  N  Y  P  S  G  P  T  P  P  P  P  N  P  I  V  P  Y  F  P  F  Y  F  Y  N  P  P  P  P  S  Q  S  A  A  I  K  L  T  D  F  S  P  K  S  S  I  F  F  T  V  F  I  A  L  L  I  F  H  *  N  *  W  G  E  I  K  *  S  V  W  N  R  T  D  L  Q  M  R  A  K  I  L  K  K  N  W  K  A  V  L  F  L  S  S  S  V  K  F  L  T  I  L  L  I  I  F  S  C  N  F  S  L  T  *  I  H  I  R  I  E  C  N  K  T  L  V  I  F  V  T  I  I  N  S  T  S  H  S  Y  S  I  Y  F  H  C  N  F  I  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133169" stop="133777"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPISIFHFPFFTNTTLSTHSSLLKILSKMGVMLAFSILIITMMITGMQNEGNLVNANETTWAGSKYQIECTMCAACDNPCATPSPPPPQPPSPPPPPSTSYNCPPPPSPPSSGGNYYYSPPPPPPSSSGGGGGGNYYYSPPPPYQNYPSGPTPPPPNPIVPYFPFYFYNPPPPSQSAAIKLTDFSPKSSIFFTVFIALLIFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="133743" PGL_stop="133303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133743" e_stop="133303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133743" e_stop="133303" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133743" stop="133303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133715" stop="133303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAATAGAAGATTTGGGTGAAAAATCAGTGAGCTTAATAGCAGCAGACTGTGAAGGCGGTGGAGGATTGTAAAAGTAGAATGGAAAATACGGAACAATTGGATTCGGAGGTGGAGGAGTAGGTCCAGAAGGGTAATTTTGGTAAGGTGGAGGTGGTGAATAGTAGTAATTACCGCCGCCGCCGCCGCCGGAGGAGGAAGGCGGTGGTGGCGGTGGAGAGTAGTAGTAATTTCCCCCGGAACTAGGAGGAGAGGGTGGAGGAGGACAATTATAAGAGGTAGAAGGCGGTGGAGGAGGCGACGGCGGCTGAGGCGGCGGCGGAGATGGGGTGGCGCAAGGGTTGTCACATGCGGCACACATTGTACATTCAATCTGATACTTTGAACCTGCCCAAGTTGTTTCATTGGCATTTACCAAATTACCCTCATTTTGCATACCC</gDNA_template>
            <first_frame> K  K  I  E  D  L  G  E  K  S  V  S  L  I  A  A  D  C  E  G  G  G  G  L  *  K  *  N  G  K  Y  G  T  I  G  F  G  G  G  G  V  G  P  E  G  *  F  W  *  G  G  G  G  E  *  *  *  L  P  P  P  P  P  P  E  E  E  G  G  G  G  G  G  E  *  *  *  F  P  P  E  L  G  G  E  G  G  G  G  Q  L  *  E  V  E  G  G  G  G  G  D  G  G  *  G  G  G  G  D  G  V  A  Q  G  L  S  H  A  A  H  I  V  H  S  I  *  Y  F  E  P  A  Q  V  V  S  L  A  F  T  K  L  P  S  F  C  I  P </first_frame>
            <second_frame>  R  K  *  K  I  W  V  K  N  Q  *  A  *  *  Q  Q  T  V  K  A  V  E  D  C  K  S  R  M  E  N  T  E  Q  L  D  S  E  V  E  E  *  V  Q  K  G  N  F  G  K  V  E  V  V  N  S  S  N  Y  R  R  R  R  R  R  R  R  K  A  V  V  A  V  E  S  S  S  N  F  P  R  N  *  E  E  R  V  E  E  D  N  Y  K  R  *  K  A  V  E  E  A  T  A  A  E  A  A  A  E  M  G  W  R  K  G  C  H  M  R  H  T  L  Y  I  Q  S  D  T  L  N  L  P  K  L  F  H  W  H  L  P  N  Y  P  H  F  A  Y   </second_frame>
            <third_frame>   E  N  R  R  F  G  *  K  I  S  E  L  N  S  S  R  L  *  R  R  W  R  I  V  K  V  E  W  K  I  R  N  N  W  I  R  R  W  R  S  R  S  R  R  V  I  L  V  R  W  R  W  *  I  V  V  I  T  A  A  A  A  A  G  G  G  R  R  W  W  R  W  R  V  V  V  I  S  P  G  T  R  R  R  G  W  R  R  T  I  I  R  G  R  R  R  W  R  R  R  R  R  L  R  R  R  R  R  W  G  G  A  R  V  V  T  C  G  T  H  C  T  F  N  L  I  L  *  T  C  P  S  C  F  I  G  I  Y  Q  I  T  L  I  L  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0023H04.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133582" stop="133358"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVVITAAAAAGGGRRWWRWRVVVISPGTRRRGWRRTIIRGRRRWRRRRRLRRRRRWGGARVVTCGTHCTFNLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 103 chains have been computed
$ 
$ memory statistics:
$ 628976 bytes spliced alignments in total
$ 36 spliced alignments have been stored
$ 17471 bytes was the average size of a spliced alignment
$ 20232 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1556 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 127 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:35:17
-->
