<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:35:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR608" ref_strand="-" ref_description="SSR608">
      <seq>ttggacatgtgcacctcagattatgccaaaagcataagttgagagtggctaatgtagtaaacaaccctttttatggctctgacccaactttgggtattgaatactttgactcatggcaaagccatgagttgagagtggttattatgaggaatgctcttgaaagtggggttgaaagaacaaagagagagaaagaataaaagtaaattgactcaagaattagttgaaagaaaagttaatatatatatatatatatatatatatatatacacacacacacacacacacacacacacaagaaatacaagcaagaaaagaagagtcacttacaaaaatgaagaaagaagggaaaataacaaggtgaaaaaatatgagaaactgggcaaataaaatgatagaaaatggtatgtttagccgatatttcaaggagggcaaaaagtcactaaagtatacctaaatataccctacctgaccctgagcctatgttacaagctaagaaagtcctatcgcgatcctaagagttgtatagcaaacttaatgcagtgaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0017L24.2" temp_strand="+" temp_description="C01HBa0017L24.2  AC238504.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0017L24 upload_account_name:manual">
        <position start="24042" stop="26270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24342" g_stop="24599" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24600" i_stop="25330" i_length="731">
            <donor d_prob="0.000" d_score="0.76"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25331" g_stop="25353" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="279" r_length="23" r_score="0.522"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25354" i_stop="25697" i_length="344">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25698" g_stop="25970" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="549" r_length="270" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0017L24.2" gen_strand="+" ref_id="SSR608" ref_strand="-">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0017L24.2" gen_strand="+"/>
        <rDNA rDNA_id="SSR608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24342" e_stop="24599"/>
          <exon e_start="25331" e_stop="25353"/>
          <exon e_start="25698" e_stop="25970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACATGTGCACCTCAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAA-AAACATTTTTGTGGCCCTGACCCAAATTTAGGTATTGTGTACTTTGACTCATGACAAATCCATGAGTTGAGAGTGGCTATTATGAGGAATGCTCTAGAAAGTGGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAACTAGTTAAAAAAAAAGTGAAATAAAAAAAATATAATAAATACAATCAAGAAAAGAAAAGAGTCACTTACACAAATAAAGAAAGAAGGGAAAATAGTAAGGTGAAAGAATGTGAGAAATTGGGCTAAACAAAACGATAAAAAGTGGTACGCTTAGCCGATATGTCAAGGAGGGCAAAAAGTCACTTAAGTATACCTAAATATACCCTACCTGACCCTGAGCCTATGTTACAAGCTAAGAAAGTCATATCGTGGTCCTAAGAGCTGTATGGCGAACTTAAAGCAGTGAAAATAAGGGCAAGCTTATCGCAATATGTATGAATGAGTGTAAAATTTGTTCTGAGAGTGATTTTTTAAAAGTAATCCTTATACTCAAACTGAAATCATTGTGTGAAAAATGAGGATGTTGTTTTGAAGTGAGGACACTAGTTGCAATACCGGAAATGTTGAGAAATTGAAGATAGGTGTCAGTCGTGGTGAGTCTATGTCATGGTCTGGTTCCACATAATTCAAGCCTAGTAGTGATAACATGCATAAACATGATGATACTGATCGATATTGATAGCCAAATGATTGCAAAACCTAAAATATGGATACTATTGTACAAAGATTTTGTAGTGATTCATAGTGCGTCGCTTGAGGACAAACAACGAATTTAAGTTGAGGGTGTTGATATACCGTGGTTTCATGGTATTTTTAATGGTTTTTCCTTAAGTTTAGTGTGTGTCCAAAAGCCTTTTTGTATTGATTTTTATGTAAGTTTTTCTTTATTTACAGGATATTTTTCCAAAGATGAATGCGTAAGTGTTTGAGCGAGAAATGCAGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTATGTCAAAAGGATAAGTTGAGGGTGGCTAATGCAATAAACAACCCTTTTAATAGCCCTGACCCAACTTTGGGTATTGTGTACTTTGACTCATGGCAAAGCCATGAGTTGAGGTGGCTATTATGAGGAATGCTATGGAAAGTGGGGTAGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAATAAAAGTAAAAGAAAAATATACAAGAAATACAAGCAAGAAAAGAAGAGAGTCACTTACACAAATGAAGAAAGAAAGGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAAATAAAATAATAGAAAATGGTATGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAAGTATACCTAAATATACCCTACCTGACCCTGAGCCAATGTTACAAGCTAAGAAAGTCCTATCGTGGTCCTAAGAGTTGTATAGCGAACTTAAAGTAGTGAAAATAA</genome_strand>
        <mrna_strand>TTGGACATGTGCACCTCAGATTATGCCAAAAGCATAAGTTGAGAGTGGCTAATGTAGTAAACAACCCTTTTTATGGCTCTGACCCAACTTTGGGTATTGAATACTTTGACTCATGGCAAAGCCATGAGTTGAGAGTGGTTATTATGAGGAATGCTCTTGAAAGTGGGGTTGAAAGAACAAAGAGAGAGAAAGAATAAAAGTAAATTGACTCAAGAATTAGTTGAAAGAAAAGT-TAAT-ATATATATAT-ATATATATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATACACACACACACAC........................................................................................................................................................................................................................................................................................................................................................ACACACACACACACAAGAAATACAAGCAAGAAAAG-A-AGAGTCACTTACAAAAATGAAGAAAGAAGGGAAAATAACAAGGTGAAAAAATATGAGAAACTGGGC-AAATAAAATGATAGAAAATGGTATGTTTAGCCGATATTTCAAGGAGGGCAAAAAGTCACTAAAGTATACCTAAATATACCCTACCTGACCCTGAGCCTATGTTACAAGCTAAGAAAGTCCTATCGCGATCCTAAGAGTTGTATAGCAAACTTAATGCAGTGAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g10180" ref_strand="+" ref_description="C2_At4g10180">
      <seq>ttatagaccaacatggttgacattttcctgcaaagaagaagattgtgatactcatgatcttcctttgaaagctcgaaagtttgagagcttcttcacgcagttgtacagtgttactcttgcttctagtggggaacttatatgcaaagatttctttctctatatggagaacaaccaatttggactctttgcaacttcaactgcacaaattcatgatgcacctcctactggaggggcaattcagggagtcccttcagttgaaaaaataactttccaccttttgaggttggaggatggagcgatacttgacgagagggtttttcacaatgattatgttaatttggcacatagcattggtgctttcttgtatgatgatttgcttgctatagtgtctcttcgttatcaaagaatacacatccttcagatcagagattctggagatcttgttgatgtacgagcaattggggaattctgccgtgaagatgatgaactttttctcaattccaattcacaggtgcttgtaaatcatgttggaaatggttttcatcatagtctgcctgaatcggaaacttctttcctgagcggtataaagcaacggcttctttcatttatatttcgaggtatatggaatgaagaaactgaccaaaccatggtatctcgaaatgctgacagccatccttctttttttgctgtttacnatatggagactactngaattgtttcattttatcagaactcagccgatgagctttatttcttgttcgagctgttcagcgaccattttcatgtttcatccaaaaagtcgttacatatgaactttatgtcctcacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0017L24.2" temp_strand="-" temp_description="C01HBa0017L24.2  AC238504.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0017L24 upload_account_name:manual">
        <position start="49072" stop="42052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48772" g_stop="48491" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48490" i_stop="48386" i_length="105">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48385" g_stop="48157" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="511" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48156" i_stop="47290" i_length="867">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.344" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47289" g_stop="47155" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="649" r_length="138" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47154" i_stop="42614" i_length="4541">
            <donor d_prob="0.593" d_score="0.85"/>
            <acceptor a_prob="0.940" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42613" g_stop="42533" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="730" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42532" i_stop="42453" i_length="80">
            <donor d_prob="0.958" d_score="0.92"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42452" g_stop="42352" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="831" r_length="101" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0017L24.2" gen_strand="-" ref_id="C2_At4g10180" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0017L24.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g10180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48772" e_stop="48491"/>
          <exon e_start="48385" e_stop="48157"/>
          <exon e_start="47289" e_stop="47155"/>
          <exon e_start="42613" e_stop="42533"/>
          <exon e_start="42452" e_stop="42352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGACCAACATGGCTGACATTTTCCTGCAAAGAAGAAGATTGTGATACTCATGATCTTCCTTTGAAAGCTAGAAAGTTTGAGAGCTTCTTCACACAGTTGTACAGTGTTACTCTTGCTTCTAGTGGGGAACTTATATGCAAAGATTTCTTTCTCTATATGGAGAGCAACCAATTTGGACTCTTTGCAACTTCAACTGCACAAATTCATGATGCACCTCCTACTGGAGGGGCAATTCAGGGAGTCCCTTCAGTTGAAAAAATAACTTTCCACCTTTTGAGGTGTGTGATCAGTCTCAACTATTAATTTCGTGAGCACTTAACATGATGTTTTGGTCTCTGAAGTTATCTTGGTTGCTTTTGTTGTGGTTGGTTTCATTAACTTAGGTTGGTGGATGGAGCTATACTTGACGAAAGGGTTTTCCACAATGATTATGTTAATTTGGCACATAGCATTGGTGCTTTCTTGTATGATGATTTGCTTGCTATAGTGTCTCTTCGTTATCAAAGAATACACATCCTTCAGATCAGAGATTCTGGAGATCTTGTTGATGTACGAGCAATTGGGGAATTCTGCCGTGAAGATGATGAACTTTTTCTCAATTCCAATTCCCAGGTAACTATGAGTGCTCTATGAGGGAGTGGGGGTTCAATTTCATCCCATTCTCATTCTTTTTTTTTCAAGAGAGGTAAGGTTGTCTAAATGAAGCACAAGGTTGTGCTAGAAATTACATAAAATTCAGTTCCTTATCAATTACTGTAGTTTTCTGAGAAAATCTGTCATCCTATCAACTGTATTAACATTTTCTAGTCTACAAAACCCAAAAAGAAAATACATCTACACTTTAGAGTATGAATGTTTTAATATTTGCTTTCAGAACATCATTTCTTTGACTTAAAAGTACCAGGATTTATTCAGCGTGAAACTGAAGTGAATTAGAGAAAAGTTCCTTTTCATATTACTTTCCTGATATGAAAGAGTGGAACACCTATTAGTGAGCCAGTTTAAGAGAAATGGAAGGAACTCCACTAAAGTTATAGTTCACCGAAGGACTAACCAAAAGGCCATTGTGTTTTCTTTCCCTCTTTTTTGTTTAAATGTTCACAGCTTTGGTATATCCTAGAAATTGAACTTCCATTGTCTCTCCACAGTGATTCCCACCAATATATCTGTCTTGTCATTACTTATAAAAAAAAAGATATCTATCTTGTGATTACATCAAAGTGGTCTGAAAGATCTTGTTTGTTGTTCTTTAAAGCTTTTGAGCGTTCCTTTTTAGGCAACCTAAATCCAAACATTACTCACCATGTGGAAAGAATTCTGAAGGATGTATATTTGATTTTGGCCATTTCTTTCTTCATATTTTATTTTATTTTGGGTTGGGGTAGGTGAGCAGGAGGGTGGAAATTTTGTATCTCTCTTATCTGAAATTTGACAAGGGTGTTGTGCATAATAATCTCTTACAGTAGCCTATTTCATCAGGTGCTTGTAAATCATGTTGGAAATGGTTTTCATCATAGTCTGCCTCAATCAGAAACTTCTTTCCTGAGCGGTATAAAGCAACGGCTGCTTTCATATATATTTCGAGGTATATGGAATGAAG---CTGACCAAACCATGGTTAGTAAGAGAATATTGATTTCCGTATGTGCTAAGAGTGTTAGTATGTTGATTGCTTGATTGCTATGTAATTTATTATGTCATCAAAGCTGCAAATCATTAGATTATTCTGATTTAAGCTTGATGTTATTTTACTTATCTATCTTTTACTGATTTTGACCTCATACAAATGGAGGCTCACTACTTTTGGTTTTATATTTTCTTTTTGGGGATGTTTCTCTTTTGTGGATGAAATTTATTTGGTAGTTCTGATTAACTGGAATCATATTATAATTGTAATCATCACTTGTTTCGAATTTTACAGTATCTAATTGCTAAAAATAGAATATCAGATTGAAAAGCTCATTTCAGAGGAGAACAATGTTTCTAAAGTAGAATTGGACTGCTAAATAGGAATGAGTTCTTTATTTGATGCCTCTAACCTAAAATGCAATTCATCTAGGATATTGTTTGAAAAAAAACCTGCTAGAAAATGCAATTCATCAAGCATAACTCTTTCTGAATCACGTATCTTATCTATTTTGTGGAACCTCGATCAATAGGAGATTGTTTTCTCATGTTATAATTTATGAAAACCATTGTGAAATGGACGTCTTAGTGCTCTATCATGTTATAATAGTTTAAGAAGATCATGTGACATGAGTGTTTTATTTGTGGAGAGCAAGAAGAAACTGCCAATCATCTTTTCATGTACAGCAAAATGAAAAGTGAAGTTGCTATACACGTTTTTGTGTTTCGGATGGAACGAGTAATCCTGGGTTCAATTGCTATTATCTGTATGGGGGATGATTTAGTTTATGAGGTAGTAAAAAGACTGTGACAGCCCAGAGCCAACTGGAAAGGTATTACCAGTACGTCACGACTTTTGGGCCTAGTCTCCTTGGTCTTTAACCCAAAAGGCACCTTGACAGTTGAATCCTGAACTCACCCCTCTATGGTCCCCAACTTTTCCCTGCTATTCCAATGTGGAATTAGCTCAAGGTAAGCTTCACAATGAACCCACCTTGGATTTCAATCGCTTGCGGTTCGTGGCTGTTACACTTAACCCCCCTTAGGTTCTCATACTACTTGTAGCGGTCCAAGCCTAACTGTCTAGTATTCTTCGCTGCGGCTCAAATTTTGTGCCTCACAGTAGTGTCCCTTTCAATTTTAACCCAAAAGACACCTCAAGAGTTGAATTCCTGGTTCCACCACGTATGGTCCTAAACTTTCCCCTCCTATTTCGATATCGGATTTTCCCAAGGGGCACTTCAATCCTCAACTGGTAGCGGTTCTTGTGCCATCACACTAAAATGTTGCACCCTGTAAATATTGGATAACTTTTGACACAATTTAATGCTTTGTAGTTCAGTTTTATTAGGTTAAGCTGTTGGGGATAATGGAGTTGTTGTAACTGATGTTGAAATAATGTGATGTCTATCTAGAACTTAGTTAAAGTTGGTTGGAATGAACCTTTGAGTTATTTACCTCAAGTGTAGTCCTTTCATTTTATACAATTTGAGAAATGTAAATAGGGAGCTAGTGTGTTGACTTTACACAACAGTTAATCATACTTTGTCTTTTTATGACCCCAAACATTTATCTCCCATGCTAACGAGGGGATTTGCAGAAGCATGCTTCCCTAGATACTGTCTTTTAGTTCAGCACTAGTGGTGTTCATGTGTTGATAACTCACCCCCTTCGGGTCTCGCTTAAGGTTTCCCCACCACCGTGCTAGGGAAAGTGTTAATTATGACGCCACATGTAGCGGCCAGGCGCAATTTCCAAAATATTGTTTGCTCTTGCCCATCCTCTTTACTCAAAAAGGAATTCTACTTTAATTTAAAAATTAGAATACTAACAAAATTATACTAATGAACTTTTTTTAGATAGTATGAAAAATTGTATGGAATCACATGAAGTAAAGGTTGAGAATGAGAAGGAAATGGAATATAAATAATATAAAATAAAAAACATAAATTTCTAGAAAACATTATAATTATAAAGATTTATAAGGAATTTAAAATAATAAAAATAAAAAATACATTGAAACGAAAAAATAGAAGTAGAAATAAAAGGAATAATTAAAAAGTAAACAGTTTGTAATTACACCTTGTAATTATCAGCAATTCACAGCCTCCCCATGTGAATTGAAAAGTGTAATTACGGTGGCTTTCCGAACAGGCCTTAATGTCTCTGATGTCATCTTGTATCCTCCATGAATTTTAGTATCCTTGGTTAGACAGTTAATCAGAAGTAAAGTCACTCTCGATTTCTGAATCCATCAATTCAAATTTTACACAGAAAATTGTATGATCATTGTTTCTGTCATTAGGAAAGTGATAAAGGGAAAAAGAGAAAAAAAAATTAAAAGATATAGGGGGAGGAAAATGATAACAAAGACAAATTTATAAGACCAAATTATCATGCTCTAGAATTCTCACGATGCAAAAAATCATCCATGTCATAAATAATATTCTTCTTCCAAAACACTTGCCTTTTCCCTCTCTTCTTGAGTAAATTGTTTTCAGTACCTATGAATTATTTGGATCTTTTTTTTTTGAAGCTGGTAAGGTTGAATTCTTCAGCATTAAGGGTATGCTGGCTACCTCCAAAAAGGAATAATTACAGATTTCCTTCTGTGAATTATTTGAATCAAAATTTATCGAGTTACTTTTTGTGTTTTTTTAATCAAGGTATGTATAATGGTGCGGAAAAATTGAGAGGAAAAGGATCATAATTAGTTCAGTTGAATGTAGAATGTATATATCGTAGAAATCTTATAATCGAACCAATAAGCTAAATTTATCTTATCATGCATTTAAATTAAATATTGGGAAATGGGTCAATATGCTCCTGAAATGTTTCGAGATGGAGCAAATTGGGCTGGACCAGATTTGCCTACGTTAATAATTGGGGGTCAAATATGCCCCCCCCCCCCCTTGTTACTAAAATAGGCAAAATTTGCCCTTGTTTTCTAGTTGCGGAAGTTTAGCACCCGTTGATGTCACATGTCCCGCAATCAAAGGATTAACTTTTTTAAATGGAGGGTAAATTTGAACTTTGCAAAGTTCAAGGGCAAATTTGACCCTTCTCTCTAATTTCTTTATCCTCCCATCTCGCCACTACTACATCTTGAGAACTATAAGTTGCCCATTGAATAATTCATAATTTTACCTTGTTTCTTTTCTAGGTTAACATAGCAATAAAACTTCTATCCATCTAGGATAGTAAACAGATCTGATCCATACACTATCGAACTCCTTTCTAAGGTAGAAAAGTTTGTATGCAAAGTTTCTACAAACTTTCAAGTACAATCTTATATGGGTATATGGGTTAAATGGACAATATCAACATGATAACAATACTTCTACTTCTAGGGACAAAGGTGATGGTTAGAAACAAAGGTGTTACAAGAATGATAACTGTCAATTAGAAAGCTAAATTGTAAGTCAGGTTGTGCACACTTTTAGGACTGCAAGAAGGTTAAAACAATCTCGTTTCCTGACTCTGGTTTCTCTTTTTTAATCAGAGAGTGCAGTGCCTGAAGAAGAAGTTTTACTTCCACTTTCAAGATTACATTGACTTGATTATCTGGAAGGTAGCGCTTTAACTTCAGTTTTCATATTTTTTATGACCCAGATGCTCTGCCTTCCAGAAAAACTGGACATATTCAGTTGCATCTGGTACCTACTGTACATTTCCAGGGCGTGATTCATTTTCCGAATCATTGAACATCTTGCTACTTCTTGACTGCAATATGAGCAGGTGCAGTTTTTGGACCGACATCACCTGTTGATCAAGTTTGGCAGTGTTGATGGTGGGGTGAGATTTCCTTTTTTGCTCTATGATATTTGTATTGTGGTCTGGTCATTTATTCTACTCGTCCATTATGTGATTCTGGTGAGTTCACTTGATATAGAAACAATAAGTGTGATGTTTGAATGGTACCCCCAAAAAAAAGAGGAAGAATTGCGGTTCAGAGTTGTTCATATGATGATTCTTTTTTAAAAAAATGCACACATAAGCAGTATCCGACTTCGTTGTTGCATAACTCTTATCTTAAAACGCATGGCACTAAGTCATTCAACTTGTCTCAGTGGGTATAGCTTGACTAGTAGTTATAGAGTCGCTGCATGAAACTCTTTCGTTATTTGCTTTATTTTGTAGAACATACATATTGCTGGTCTGGATCATTATATTTTACCTGTATGAAATCAATTAATATTATTAAGGTTTAGCATAGATGAGTTTGTAGTTGAAGCCCCTTTTTCTCATTCAATAAGAGGAGCTACTTTTGAGTTCAACTGTAACTATATATATAAGATCATCTTGCCCTCTAAATTTGTTTAGAGTTTCTTTTTGATGCAAGCCAATATAAGTTGTCACGACAACGTGTTACCAAAGTTCTAATCCAATTAATGTTGCATAGCCGTATATAGAATCTGTTTATTTCTGTTATTTTGGTGGTCTGATATCTCTTGTACTATTTAGTTTGAAGCTTTTGCGCTCTATGGGAATAGCCTGACACCCATGCATGCTGAATATTGTTGAATCTGCAGGTATCCCGAAATGCTGACATCCATCCTTCTTTTTTTGCTGTTTACAATATGGAGACTACTGAAATTGTTGCATTTTATCAGGTATATCTGAGGCTTAATGCAAGTGTTGTACTTCCTGTCATGCAATGTCTATCAGCATTAACTGTTTTCGTATCCTTCAGAACTCAGCCGATGAGCTTTATTTCTTGTTCGAGCTGTTCAGCGACCATTTTCACGTTTCATCCAAAAGTTCATTACATATGAACTTCATGTCCTCACACTC</genome_strand>
        <mrna_strand>TTATAGACCAACATGGTTGACATTTTCCTGCAAAGAAGAAGATTGTGATACTCATGATCTTCCTTTGAAAGCTCGAAAGTTTGAGAGCTTCTTCACGCAGTTGTACAGTGTTACTCTTGCTTCTAGTGGGGAACTTATATGCAAAGATTTCTTTCTCTATATGGAGAACAACCAATTTGGACTCTTTGCAACTTCAACTGCACAAATTCATGATGCACCTCCTACTGGAGGGGCAATTCAGGGAGTCCCTTCAGTTGAAAAAATAACTTTCCACCTTTTGAG.........................................................................................................GTTGGAGGATGGAGCGATACTTGACGAGAGGGTTTTTCACAATGATTATGTTAATTTGGCACATAGCATTGGTGCTTTCTTGTATGATGATTTGCTTGCTATAGTGTCTCTTCGTTATCAAAGAATACACATCCTTCAGATCAGAGATTCTGGAGATCTTGTTGATGTACGAGCAATTGGGGAATTCTGCCGTGAAGATGATGAACTTTTTCTCAATTCCAATTCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGTAAATCATGTTGGAAATGGTTTTCATCATAGTCTGCCTGAATCGGAAACTTCTTTCCTGAGCGGTATAAAGCAACGGCTTCTTTCATTTATATTTCGAGGTATATGGAATGAAGAAACTGACCAAACCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCGAAATGCTGACAGCCATCCTTCTTTTTTTGCTGTTTACNATATGGAGACTACTNGAATTGTTTCATTTTATCAG................................................................................AACTCAGCCGATGAGCTTTATTTCTTGTTCGAGCTGTTCAGCGACCATTTTCATGTTTCATCCAAAAAGTCGTTACATATGAACTTTATGTCCTCACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT151-F" ref_strand="+" ref_description="CT151-F">
      <seq>tgccgtgaagatgatgaactttttctcaattccaattcccagcagcttgtaaatcatgatggaaatggttttcatcatattctgcctcaatcagaaacttctttcctgagcggtataaagcaacggctgctttcatatatatttcgaggcatatggaatgaagctgaccaaaccatgagagtgcagtgcctgaagaagaagttttacttccactttcaagattacattgacttgattatctggaaggtgcagtttttggaccgacatcacctgttgatcaagtttggcagtgttgatggtggggtatcccgaaatgctgacatccatccttctttttttgctgtttacaatatggagactactgaaattggtgcatcttatcagaactcagccgatgagctttatttcttgttctagctgttcagcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0017L24-b3C7D/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0017L24.2" temp_strand="-" temp_description="C01HBa0017L24.2  AC238504.6 htgs_phase:2 submitted_to_sgn_as:C01HBa0017L24 upload_account_name:manual">
        <position start="48498" stop="42108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48198" g_stop="48157" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48156" i_stop="47290" i_length="867">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.344" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47289" g_stop="47155" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="177" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47154" i_stop="43644" i_length="3511">
            <donor d_prob="0.593" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43643" g_stop="43575" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43574" i_stop="43408" i_length="167">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43407" g_stop="43351" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43350" i_stop="42614" i_length="737">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42613" g_stop="42533" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="384" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42532" i_stop="42453" i_length="80">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.701" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42452" g_stop="42408" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="429" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0017L24.2" gen_strand="-" ref_id="CT151-F" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0017L24.2" gen_strand="-"/>
        <rDNA rDNA_id="CT151-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48198" e_stop="48157"/>
          <exon e_start="47289" e_stop="47155"/>
          <exon e_start="43643" e_stop="43575"/>
          <exon e_start="43407" e_stop="43351"/>
          <exon e_start="42613" e_stop="42533"/>
          <exon e_start="42452" e_stop="42408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTGAAGATGATGAACTTTTTCTCAATTCCAATTCCCAGGTAACTATGAGTGCTCTATGAGGGAGTGGGGGTTCAATTTCATCCCATTCTCATTCTTTTTTTTTCAAGAGAGGTAAGGTTGTCTAAATGAAGCACAAGGTTGTGCTAGAAATTACATAAAATTCAGTTCCTTATCAATTACTGTAGTTTTCTGAGAAAATCTGTCATCCTATCAACTGTATTAACATTTTCTAGTCTACAAAACCCAAAAAGAAAATACATCTACACTTTAGAGTATGAATGTTTTAATATTTGCTTTCAGAACATCATTTCTTTGACTTAAAAGTACCAGGATTTATTCAGCGTGAAACTGAAGTGAATTAGAGAAAAGTTCCTTTTCATATTACTTTCCTGATATGAAAGAGTGGAACACCTATTAGTGAGCCAGTTTAAGAGAAATGGAAGGAACTCCACTAAAGTTATAGTTCACCGAAGGACTAACCAAAAGGCCATTGTGTTTTCTTTCCCTCTTTTTTGTTTAAATGTTCACAGCTTTGGTATATCCTAGAAATTGAACTTCCATTGTCTCTCCACAGTGATTCCCACCAATATATCTGTCTTGTCATTACTTATAAAAAAAAAGATATCTATCTTGTGATTACATCAAAGTGGTCTGAAAGATCTTGTTTGTTGTTCTTTAAAGCTTTTGAGCGTTCCTTTTTAGGCAACCTAAATCCAAACATTACTCACCATGTGGAAAGAATTCTGAAGGATGTATATTTGATTTTGGCCATTTCTTTCTTCATATTTTATTTTATTTTGGGTTGGGGTAGGTGAGCAGGAGGGTGGAAATTTTGTATCTCTCTTATCTGAAATTTGACAAGGGTGTTGTGCATAATAATCTCTTACAGTAGCCTATTTCATCAGGTGCTTGTAAATCATGTTGGAAATGGTTTTCATCATAGTCTGCCTCAATCAGAAACTTCTTTCCTGAGCGGTATAAAGCAACGGCTGCTTTCATATATATTTCGAGGTATATGGAATGAAGCTGACCAAACCATGGTTAGTAAGAGAATATTGATTTCCGTATGTGCTAAGAGTGTTAGTATGTTGATTGCTTGATTGCTATGTAATTTATTATGTCATCAAAGCTGCAAATCATTAGATTATTCTGATTTAAGCTTGATGTTATTTTACTTATCTATCTTTTACTGATTTTGACCTCATACAAATGGAGGCTCACTACTTTTGGTTTTATATTTTCTTTTTGGGGATGTTTCTCTTTTGTGGATGAAATTTATTTGGTAGTTCTGATTAACTGGAATCATATTATAATTGTAATCATCACTTGTTTCGAATTTTACAGTATCTAATTGCTAAAAATAGAATATCAGATTGAAAAGCTCATTTCAGAGGAGAACAATGTTTCTAAAGTAGAATTGGACTGCTAAATAGGAATGAGTTCTTTATTTGATGCCTCTAACCTAAAATGCAATTCATCTAGGATATTGTTTGAAAAAAAACCTGCTAGAAAATGCAATTCATCAAGCATAACTCTTTCTGAATCACGTATCTTATCTATTTTGTGGAACCTCGATCAATAGGAGATTGTTTTCTCATGTTATAATTTATGAAAACCATTGTGAAATGGACGTCTTAGTGCTCTATCATGTTATAATAGTTTAAGAAGATCATGTGACATGAGTGTTTTATTTGTGGAGAGCAAGAAGAAACTGCCAATCATCTTTTCATGTACAGCAAAATGAAAAGTGAAGTTGCTATACACGTTTTTGTGTTTCGGATGGAACGAGTAATCCTGGGTTCAATTGCTATTATCTGTATGGGGGATGATTTAGTTTATGAGGTAGTAAAAAGACTGTGACAGCCCAGAGCCAACTGGAAAGGTATTACCAGTACGTCACGACTTTTGGGCCTAGTCTCCTTGGTCTTTAACCCAAAAGGCACCTTGACAGTTGAATCCTGAACTCACCCCTCTATGGTCCCCAACTTTTCCCTGCTATTCCAATGTGGAATTAGCTCAAGGTAAGCTTCACAATGAACCCACCTTGGATTTCAATCGCTTGCGGTTCGTGGCTGTTACACTTAACCCCCCTTAGGTTCTCATACTACTTGTAGCGGTCCAAGCCTAACTGTCTAGTATTCTTCGCTGCGGCTCAAATTTTGTGCCTCACAGTAGTGTCCCTTTCAATTTTAACCCAAAAGACACCTCAAGAGTTGAATTCCTGGTTCCACCACGTATGGTCCTAAACTTTCCCCTCCTATTTCGATATCGGATTTTCCCAAGGGGCACTTCAATCCTCAACTGGTAGCGGTTCTTGTGCCATCACACTAAAATGTTGCACCCTGTAAATATTGGATAACTTTTGACACAATTTAATGCTTTGTAGTTCAGTTTTATTAGGTTAAGCTGTTGGGGATAATGGAGTTGTTGTAACTGATGTTGAAATAATGTGATGTCTATCTAGAACTTAGTTAAAGTTGGTTGGAATGAACCTTTGAGTTATTTACCTCAAGTGTAGTCCTTTCATTTTATACAATTTGAGAAATGTAAATAGGGAGCTAGTGTGTTGACTTTACACAACAGTTAATCATACTTTGTCTTTTTATGACCCCAAACATTTATCTCCCATGCTAACGAGGGGATTTGCAGAAGCATGCTTCCCTAGATACTGTCTTTTAGTTCAGCACTAGTGGTGTTCATGTGTTGATAACTCACCCCCTTCGGGTCTCGCTTAAGGTTTCCCCACCACCGTGCTAGGGAAAGTGTTAATTATGACGCCACATGTAGCGGCCAGGCGCAATTTCCAAAATATTGTTTGCTCTTGCCCATCCTCTTTACTCAAAAAGGAATTCTACTTTAATTTAAAAATTAGAATACTAACAAAATTATACTAATGAACTTTTTTTAGATAGTATGAAAAATTGTATGGAATCACATGAAGTAAAGGTTGAGAATGAGAAGGAAATGGAATATAAATAATATAAAATAAAAAACATAAATTTCTAGAAAACATTATAATTATAAAGATTTATAAGGAATTTAAAATAATAAAAATAAAAAATACATTGAAACGAAAAAATAGAAGTAGAAATAAAAGGAATAATTAAAAAGTAAACAGTTTGTAATTACACCTTGTAATTATCAGCAATTCACAGCCTCCCCATGTGAATTGAAAAGTGTAATTACGGTGGCTTTCCGAACAGGCCTTAATGTCTCTGATGTCATCTTGTATCCTCCATGAATTTTAGTATCCTTGGTTAGACAGTTAATCAGAAGTAAAGTCACTCTCGATTTCTGAATCCATCAATTCAAATTTTACACAGAAAATTGTATGATCATTGTTTCTGTCATTAGGAAAGTGATAAAGGGAAAAAGAGAAAAAAAAATTAAAAGATATAGGGGGAGGAAAATGATAACAAAGACAAATTTATAAGACCAAATTATCATGCTCTAGAATTCTCACGATGCAAAAAATCATCCATGTCATAAATAATATTCTTCTTCCAAAACACTTGCCTTTTCCCTCTCTTCTTGAGTAAATTGTTTTCAGTACCTATGAATTATTTGGATCTTTTTTTTTTGAAGCTGGTAAGGTTGAATTCTTCAGCATTAAGGGTATGCTGGCTACCTCCAAAAAGGAATAATTACAGATTTCCTTCTGTGAATTATTTGAATCAAAATTTATCGAGTTACTTTTTGTGTTTTTTTAATCAAGGTATGTATAATGGTGCGGAAAAATTGAGAGGAAAAGGATCATAATTAGTTCAGTTGAATGTAGAATGTATATATCGTAGAAATCTTATAATCGAACCAATAAGCTAAATTTATCTTATCATGCATTTAAATTAAATATTGGGAAATGGGTCAATATGCTCCTGAAATGTTTCGAGATGGAGCAAATTGGGCTGGACCAGATTTGCCTACGTTAATAATTGGGGGTCAAATATGCCCCCCCCCCCCCTTGTTACTAAAATAGGCAAAATTTGCCCTTGTTTTCTAGTTGCGGAAGTTTAGCACCCGTTGATGTCACATGTCCCGCAATCAAAGGATTAACTTTTTTAAATGGAGGGTAAATTTGAACTTTGCAAAGTTCAAGGGCAAATTTGACCCTTCTCTCTAATTTCTTTATCCTCCCATCTCGCCACTACTACATCTTGAGAACTATAAGTTGCCCATTGAATAATTCATAATTTTACCTTGTTTCTTTTCTAGGTTAACATAGCAATAAAACTTCTATCCATCTAGGATAGTAAACAGATCTGATCCATACACTATCGAACTCCTTTCTAAGGTAGAAAAGTTTGTATGCAAAGTTTCTACAAACTTTCAAGTACAATCTTATATGGGTATATGGGTTAAATGGACAATATCAACATGATAACAATACTTCTACTTCTAGGGACAAAGGTGATGGTTAGAAACAAAGGTGTTACAAGAATGATAACTGTCAATTAGAAAGCTAAATTGTAAGTCAGGTTGTGCACACTTTTAGGACTGCAAGAAGGTTAAAACAATCTCGTTTCCTGACTCTGGTTTCTCTTTTTTAATCAGAGAGTGCAGTGCCTGAAGAAGAAGTTTTACTTCCACTTTCAAGATTACATTGACTTGATTATCTGGAAGGTAGCGCTTTAACTTCAGTTTTCATATTTTTTATGACCCAGATGCTCTGCCTTCCAGAAAAACTGGACATATTCAGTTGCATCTGGTACCTACTGTACATTTCCAGGGCGTGATTCATTTTCCGAATCATTGAACATCTTGCTACTTCTTGACTGCAATATGAGCAGGTGCAGTTTTTGGACCGACATCACCTGTTGATCAAGTTTGGCAGTGTTGATGGTGGGGTGAGATTTCCTTTTTTGCTCTATGATATTTGTATTGTGGTCTGGTCATTTATTCTACTCGTCCATTATGTGATTCTGGTGAGTTCACTTGATATAGAAACAATAAGTGTGATGTTTGAATGGTACCCCCAAAAAAAAGAGGAAGAATTGCGGTTCAGAGTTGTTCATATGATGATTCTTTTTTAAAAAAATGCACACATAAGCAGTATCCGACTTCGTTGTTGCATAACTCTTATCTTAAAACGCATGGCACTAAGTCATTCAACTTGTCTCAGTGGGTATAGCTTGACTAGTAGTTATAGAGTCGCTGCATGAAACTCTTTCGTTATTTGCTTTATTTTGTAGAACATACATATTGCTGGTCTGGATCATTATATTTTACCTGTATGAAATCAATTAATATTATTAAGGTTTAGCATAGATGAGTTTGTAGTTGAAGCCCCTTTTTCTCATTCAATAAGAGGAGCTACTTTTGAGTTCAACTGTAACTATATATATAAGATCATCTTGCCCTCTAAATTTGTTTAGAGTTTCTTTTTGATGCAAGCCAATATAAGTTGTCACGACAACGTGTTACCAAAGTTCTAATCCAATTAATGTTGCATAGCCGTATATAGAATCTGTTTATTTCTGTTATTTTGGTGGTCTGATATCTCTTGTACTATTTAGTTTGAAGCTTTTGCGCTCTATGGGAATAGCCTGACACCCATGCATGCTGAATATTGTTGAATCTGCAGGTATCCCGAAATGCTGACATCCATCCTTCTTTTTTTGCTGTTTACAATATGGAGACTACTGAAATTGTTGCATTTTATCAGGTATATCTGAGGCTTAATGCAAGTGTTGTACTTCCTGTCATGCAATGTCTATCAGCATTAACTGTTTTCGTATCCTTCAGAACTCAGCCGATGAGCTTTATTTCTTGTTCGAGCTGTTCAGCGAC</genome_strand>
        <mrna_strand>TGCCGTGAAGATGATGAACTTTTTCTCAATTCCAATTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTGTAAATCATGATGGAAATGGTTTTCATCATATTCTGCCTCAATCAGAAACTTCTTTCCTGAGCGGTATAAAGCAACGGCTGCTTTCATATATATTTCGAGGCATATGGAATGAAGCTGACCAAACCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGCAGTGCCTGAAGAAGAAGTTTTACTTCCACTTTCAAGATTACATTGACTTGATTATCTGGAAG.......................................................................................................................................................................GTGCAGTTTTTGGACCGACATCACCTGTTGATCAAGTTTGGCAGTGTTGATGGTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCCGAAATGCTGACATCCATCCTTCTTTTTTTGCTGTTTACAATATGGAGACTACTGAAATTGGTGCATCTTATCAG................................................................................AACTCAGCCGATGAGCTTTATTTCTTGTTCTAGCTGTTCAGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="24342" PGL_stop="25970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24342" e_stop="24599"/>
            <exon e_start="25331" e_stop="25353"/>
            <exon e_start="25698" e_stop="25970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.880"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.522"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.880">
            <gDNA_exon_boundary e_start="24342" e_stop="24599" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24600" i_stop="25330" i_length="731"/>
          </intron>
          <exon e_serial="2" e_score="0.522">
            <gDNA_exon_boundary e_start="25331" e_stop="25353" e_length="23"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25354" i_stop="25697" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="0.919">
            <gDNA_exon_boundary e_start="25698" e_stop="25970" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24342" stop="24599"/>
              <exon start="25331" stop="25353"/>
              <exon start="25698" stop="25970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR608" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGACATGTGCACCTCAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAAAAACATTTTTGTGGCCCTGACCCAAATTTAGGTATTGTGTACTTTGACTCATGACAAATCCATGAGTTGAGAGTGGCTATTATGAGGAATGCTCTAGAAAGTGGGGTTGAAAGAACAAAGAGAGAGAAAGAACAAAAGTAAAGTGACTCAAGAACTAGTTAAAAAAAAAGTGAAATAAAAAAAATATAATAAATACA : GATATTTTTCCAAAGATGAATGC : AAAGAAAAATATACAAGAAATACAAGCAAGAAAAGAAGAGAGTCACTTACACAAATGAAGAAAGAAAGGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAAATAAAATAATAGAAAATGGTATGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAAGTATACCTAAATATACCCTACCTGACCCTGAGCCAATGTTACAAGCTAAGAAAGTCCTATCGTGGTCCTAAGAGTTGTATAGCGAACTTAAAGTAGTGAAAATAA</gDNA_template>
            <first_frame> L  D  M  C  T  S  A  Y  A  K  S  I  S  *  G  W  L  M  Q  *  K  T  F  L  W  P  *  P  K  F  R  Y  C  V  L  *  L  M  T  N  P  *  V  E  S  G  Y  Y  E  E  C  S  R  K  W  G  *  K  N  K  E  R  E  R  T  K  V  K  *  L  K  N  *  L  K  K  K  *  N  K  K  N  I  I  N  T  :  D  I  F  P  K  M  N  A :   K  K  N  I  Q  E  I  Q  A  R  K  E  E  S  H  L  H  K  *  R  K  K  G  K  *  Q  G  E  R  I  *  E  T  G  Q  N  K  I  I  E  N  G  M  F  S  R  Y  V  K  E  G  K  K  S  L  K  Y  T  *  I  Y  P  T  *  P  *  A  N  V  T  S  *  E  S  P  I  V  V  L  R  V  V  *  R  T  *  S  S  E  N   </first_frame>
            <second_frame>  W  T  C  A  P  Q  L  M  P  K  A  *  V  E  G  G  *  C  S  K  K  H  F  C  G  P  D  P  N  L  G  I  V  Y  F  D  S  *  Q  I  H  E  L  R  V  A  I  M  R  N  A  L  E  S  G  V  E  R  T  K  R  E  K  E  Q  K  *  S  D  S  R  T  S  *  K  K  S  E  I  K  K  I  *  *  I  Q :   I  F  F  Q  R  *  M   : Q  R  K  I  Y  K  K  Y  K  Q  E  K  K  R  V  T  Y  T  N  E  E  R  K  E  N  S  K  V  K  E  Y  E  K  L  G  K  I  K  *  *  K  M  V  C  L  A  D  M  S  R  R  E  K  S  H  *  S  I  P  K  Y  T  L  P  D  P  E  P  M  L  Q  A  K  K  V  L  S  W  S  *  E  L  Y  S  E  L  K  V  V  K  I  </second_frame>
            <third_frame>   G  H  V  H  L  S  L  C  Q  K  H  K  L  R  V  A  N  A  V  K  N  I  F  V  A  L  T  Q  I  *  V  L  C  T  L  T  H  D  K  S  M  S  *  E  W  L  L  *  G  M  L  *  K  V  G  L  K  E  Q  R  E  R  K  N  K  S  K  V  T  Q  E  L  V  K  K  K  V  K  *  K  K  Y  N  K  Y   : R  Y  F  S  K  D  E  C  :  K  E  K  Y  T  R  N  T  S  K  K  R  R  E  S  L  T  Q  M  K  K  E  R  K  I  A  R  *  K  N  M  R  N  W  A  K  *  N  N  R  K  W  Y  V  *  P  I  C  Q  G  G  K  K  V  T  K  V  Y  L  N  I  P  Y  L  T  L  S  Q  C  Y  K  L  R  K  S  Y  R  G  P  K  S  C  I  A  N  L  K  *  *  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0017L24.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="48772" PGL_stop="42352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48772" e_stop="48491"/>
            <exon e_start="48385" e_stop="48157"/>
            <exon e_start="47289" e_stop="47155"/>
            <exon e_start="42613" e_stop="42533"/>
            <exon e_start="42452" e_stop="42352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.848" acc_prob="0.344" e_score="0.978"/>
          <exon-intron don_prob="0.593" acc_prob="0.940" e_score="0.926"/>
          <exon-intron don_prob="0.958" acc_prob="0.701" e_score="0.926"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="48772" e_stop="48491" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48490" i_stop="48386" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="48385" e_stop="48157" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.848" acc_prob="0.344">
            <gDNA_intron_boundary i_start="48156" i_stop="47290" i_length="867"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="47289" e_stop="47155" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.593" acc_prob="0.940">
            <gDNA_intron_boundary i_start="47154" i_stop="42614" i_length="4541"/>
          </intron>
          <exon e_serial="4" e_score="0.926">
            <gDNA_exon_boundary e_start="42613" e_stop="42533" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.701">
            <gDNA_intron_boundary i_start="42532" i_stop="42453" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="42452" e_stop="42352" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48772" stop="48491"/>
              <exon start="48385" stop="48157"/>
              <exon start="47289" stop="47155"/>
              <exon start="42613" stop="42533"/>
              <exon start="42452" stop="42352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g10180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATAGACCAACATGGCTGACATTTTCCTGCAAAGAAGAAGATTGTGATACTCATGATCTTCCTTTGAAAGCTAGAAAGTTTGAGAGCTTCTTCACACAGTTGTACAGTGTTACTCTTGCTTCTAGTGGGGAACTTATATGCAAAGATTTCTTTCTCTATATGGAGAGCAACCAATTTGGACTCTTTGCAACTTCAACTGCACAAATTCATGATGCACCTCCTACTGGAGGGGCAATTCAGGGAGTCCCTTCAGTTGAAAAAATAACTTTCCACCTTTTGAG : GTTGGTGGATGGAGCTATACTTGACGAAAGGGTTTTCCACAATGATTATGTTAATTTGGCACATAGCATTGGTGCTTTCTTGTATGATGATTTGCTTGCTATAGTGTCTCTTCGTTATCAAAGAATACACATCCTTCAGATCAGAGATTCTGGAGATCTTGTTGATGTACGAGCAATTGGGGAATTCTGCCGTGAAGATGATGAACTTTTTCTCAATTCCAATTCCCAG : GTGCTTGTAAATCATGTTGGAAATGGTTTTCATCATAGTCTGCCTCAATCAGAAACTTCTTTCCTGAGCGGTATAAAGCAACGGCTGCTTTCATATATATTTCGAGGTATATGGAATGAAGCTGACCAAACCATG : GTATCCCGAAATGCTGACATCCATCCTTCTTTTTTTGCTGTTTACAATATGGAGACTACTGAAATTGTTGCATTTTATCAG : AACTCAGCCGATGAGCTTTATTTCTTGTTCGAGCTGTTCAGCGACCATTTTCACGTTTCATCCAAAAGTTCATTACATATGAACTTCATGTCCTCACACTC</gDNA_template>
            <first_frame> L  *  T  N  M  A  D  I  F  L  Q  R  R  R  L  *  Y  S  *  S  S  F  E  S  *  K  V  *  E  L  L  H  T  V  V  Q  C  Y  S  C  F  *  W  G  T  Y  M  Q  R  F  L  S  L  Y  G  E  Q  P  I  W  T  L  C  N  F  N  C  T  N  S  *  C  T  S  Y  W  R  G  N  S  G  S  P  F  S  *  K  N  N  F  P  P  F  E  :  V  G  G  W  S  Y  T  *  R  K  G  F  P  Q  *  L  C  *  F  G  T  *  H  W  C  F  L  V  *  *  F  A  C  Y  S  V  S  S  L  S  K  N  T  H  P  S  D  Q  R  F  W  R  S  C  *  C  T  S  N  W  G  I  L  P  *  R  *  *  T  F  S  Q  F  Q  F  P   : G  A  C  K  S  C  W  K  W  F  S  S  *  S  A  S  I  R  N  F  F  P  E  R  Y  K  A  T  A  A  F  I  Y  I  S  R  Y  M  E  *  S  *  P  N  H   : G  I  P  K  C  *  H  P  S  F  F  F  C  C  L  Q  Y  G  D  Y  *  N  C  C  I  L  S   : E  L  S  R  *  A  L  F  L  V  R  A  V  Q  R  P  F  S  R  F  I  Q  K  F  I  T  Y  E  L  H  V  L  T  L </first_frame>
            <second_frame>  Y  R  P  T  W  L  T  F  S  C  K  E  E  D  C  D  T  H  D  L  P  L  K  A  R  K  F  E  S  F  F  T  Q  L  Y  S  V  T  L  A  S  S  G  E  L  I  C  K  D  F  F  L  Y  M  E  S  N  Q  F  G  L  F  A  T  S  T  A  Q  I  H  D  A  P  P  T  G  G  A  I  Q  G  V  P  S  V  E  K  I  T  F  H  L  L  R :   L  V  D  G  A  I  L  D  E  R  V  F  H  N  D  Y  V  N  L  A  H  S  I  G  A  F  L  Y  D  D  L  L  A  I  V  S  L  R  Y  Q  R  I  H  I  L  Q  I  R  D  S  G  D  L  V  D  V  R  A  I  G  E  F  C  R  E  D  D  E  L  F  L  N  S  N  S  Q  :  V  L  V  N  H  V  G  N  G  F  H  H  S  L  P  Q  S  E  T  S  F  L  S  G  I  K  Q  R  L  L  S  Y  I  F  R  G  I  W  N  E  A  D  Q  T  M  :  V  S  R  N  A  D  I  H  P  S  F  F  A  V  Y  N  M  E  T  T  E  I  V  A  F  Y  Q  :  N  S  A  D  E  L  Y  F  L  F  E  L  F  S  D  H  F  H  V  S  S  K  S  S  L  H  M  N  F  M  S  S  H   </second_frame>
            <third_frame>   I  D  Q  H  G  *  H  F  P  A  K  K  K  I  V  I  L  M  I  F  L  *  K  L  E  S  L  R  A  S  S  H  S  C  T  V  L  L  L  L  L  V  G  N  L  Y  A  K  I  S  F  S  I  W  R  A  T  N  L  D  S  L  Q  L  Q  L  H  K  F  M  M  H  L  L  L  E  G  Q  F  R  E  S  L  Q  L  K  K  *  L  S  T  F  *   : G  W  W  M  E  L  Y  L  T  K  G  F  S  T  M  I  M  L  I  W  H  I  A  L  V  L  S  C  M  M  I  C  L  L  *  C  L  F  V  I  K  E  Y  T  S  F  R  S  E  I  L  E  I  L  L  M  Y  E  Q  L  G  N  S  A  V  K  M  M  N  F  F  S  I  P  I  P  R :   C  L  *  I  M  L  E  M  V  F  I  I  V  C  L  N  Q  K  L  L  S  *  A  V  *  S  N  G  C  F  H  I  Y  F  E  V  Y  G  M  K  L  T  K  P  W :   Y  P  E  M  L  T  S  I  L  L  F  L  L  F  T  I  W  R  L  L  K  L  L  H  F  I  R :   T  Q  P  M  S  F  I  S  C  S  S  C  S  A  T  I  F  T  F  H  P  K  V  H  Y  I  *  T  S  C  P  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0017L24.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48771" stop="48491"/>
                    <exon start="48385" stop="48157"/>
                    <exon start="47289" stop="47155"/>
                    <exon start="42613" stop="42533"/>
                    <exon start="42452" stop="42354"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRPTWLTFSCKEEDCDTHDLPLKARKFESFFTQLYSVTLASSGELICKDFFLYMESNQFGLFATSTAQIHDAPPTGGAIQGVPSVEKITFHLLRLVDGAILDERVFHNDYVNLAHSIGAFLYDDLLAIVSLRYQRIHILQIRDSGDLVDVRAIGEFCREDDELFLNSNSQVLVNHVGNGFHHSLPQSETSFLSGIKQRLLSYIFRGIWNEADQTMVSRNADIHPSFFAVYNMETTEIVAFYQNSADELYFLFELFSDHFHVSSKSSLHMNFMSSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48198" e_stop="48157"/>
            <exon e_start="47289" e_stop="47155"/>
            <exon e_start="43643" e_stop="43575"/>
            <exon e_start="43407" e_stop="43351"/>
            <exon e_start="42613" e_stop="42533"/>
            <exon e_start="42452" e_stop="42408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.848" acc_prob="0.344" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.911" e_score="0.963"/>
          <exon-intron don_prob="0.789" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.701" e_score="0.975"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48198" e_stop="48157" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.848" acc_prob="0.344">
            <gDNA_intron_boundary i_start="48156" i_stop="47290" i_length="867"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="47289" e_stop="47155" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.911">
            <gDNA_intron_boundary i_start="47154" i_stop="43644" i_length="3511"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43643" e_stop="43575" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.789" acc_prob="0.961">
            <gDNA_intron_boundary i_start="43574" i_stop="43408" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43407" e_stop="43351" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.940">
            <gDNA_intron_boundary i_start="43350" i_stop="42614" i_length="737"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="42613" e_stop="42533" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.701">
            <gDNA_intron_boundary i_start="42532" i_stop="42453" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="42452" e_stop="42408" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48198" stop="48157"/>
              <exon start="47289" stop="47155"/>
              <exon start="43643" stop="43575"/>
              <exon start="43407" stop="43351"/>
              <exon start="42613" stop="42533"/>
              <exon start="42452" stop="42408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT151-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCGTGAAGATGATGAACTTTTTCTCAATTCCAATTCCCAG : GTGCTTGTAAATCATGTTGGAAATGGTTTTCATCATAGTCTGCCTCAATCAGAAACTTCTTTCCTGAGCGGTATAAAGCAACGGCTGCTTTCATATATATTTCGAGGTATATGGAATGAAGCTGACCAAACCATG : AGAGTGCAGTGCCTGAAGAAGAAGTTTTACTTCCACTTTCAAGATTACATTGACTTGATTATCTGGAAG : GTGCAGTTTTTGGACCGACATCACCTGTTGATCAAGTTTGGCAGTGTTGATGGTGGG : GTATCCCGAAATGCTGACATCCATCCTTCTTTTTTTGCTGTTTACAATATGGAGACTACTGAAATTGTTGCATTTTATCAG : AACTCAGCCGATGAGCTTTATTTCTTGTTCGAGCTGTTCAGCGAC</gDNA_template>
            <first_frame> C  R  E  D  D  E  L  F  L  N  S  N  S  Q  :  V  L  V  N  H  V  G  N  G  F  H  H  S  L  P  Q  S  E  T  S  F  L  S  G  I  K  Q  R  L  L  S  Y  I  F  R  G  I  W  N  E  A  D  Q  T  M  :  R  V  Q  C  L  K  K  K  F  Y  F  H  F  Q  D  Y  I  D  L  I  I  W  K  :  V  Q  F  L  D  R  H  H  L  L  I  K  F  G  S  V  D  G  G  :  V  S  R  N  A  D  I  H  P  S  F  F  A  V  Y  N  M  E  T  T  E  I  V  A  F  Y  Q  :  N  S  A  D  E  L  Y  F  L  F  E  L  F  S  D </first_frame>
            <second_frame>  A  V  K  M  M  N  F  F  S  I  P  I  P  R :   C  L  *  I  M  L  E  M  V  F  I  I  V  C  L  N  Q  K  L  L  S  *  A  V  *  S  N  G  C  F  H  I  Y  F  E  V  Y  G  M  K  L  T  K  P  * :   E  C  S  A  *  R  R  S  F  T  S  T  F  K  I  T  L  T  *  L  S  G  R :   C  S  F  W  T  D  I  T  C  *  S  S  L  A  V  L  M  V  G :   Y  P  E  M  L  T  S  I  L  L  F  L  L  F  T  I  W  R  L  L  K  L  L  H  F  I  R :   T  Q  P  M  S  F  I  S  C  S  S  C  S  A   </second_frame>
            <third_frame>   P  *  R  *  *  T  F  S  Q  F  Q  F  P   : G  A  C  K  S  C  W  K  W  F  S  S  *  S  A  S  I  R  N  F  F  P  E  R  Y  K  A  T  A  A  F  I  Y  I  S  R  Y  M  E  *  S  *  P  N  H   : E  S  A  V  P  E  E  E  V  L  L  P  L  S  R  L  H  *  L  D  Y  L  E   : G  A  V  F  G  P  T  S  P  V  D  Q  V  W  Q  C  *  W  W   : G  I  P  K  C  *  H  P  S  F  F  F  C  C  L  Q  Y  G  D  Y  *  N  C  C  I  L  S   : E  L  S  R  *  A  L  F  L  V  R  A  V  Q  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0017L24.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48198" stop="48157"/>
                    <exon start="47289" stop="47155"/>
                    <exon start="43643" stop="43575"/>
                    <exon start="43407" stop="43351"/>
                    <exon start="42613" stop="42533"/>
                    <exon start="42452" stop="42408"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CREDDELFLNSNSQVLVNHVGNGFHHSLPQSETSFLSGIKQRLLSYIFRGIWNEADQTMRVQCLKKKFYFHFQDYIDLIIWKVQFLDRHHLLIKFGSVDGGVSRNADIHPSFFAVYNMETTEIVAFYQNSADELYFLFELFSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 7352 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2450 bytes was the average size of a spliced alignment
$ 7144 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3572 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:35:07
-->
