<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:44:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591302" ref_strand="+" ref_description="SGN-U591302 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggaaatggagaaaccaaccctgcaactcttggccagtagctgcaaataatttggggagtaatctccttgtttggtgtgttaattctttagaacacccttgttaattatccattaattttaagaagggggcgtgaccagttgcttacgaagtttgttttagttattgaatgtgctaagtatgaatggaaaccataatcggattattagtggtgtcgtgttggtgcttgggctgttttgattaaagcaaactgcaggaaaattctattttggcattatgtatatgctgaatgtgattatgagtatatactccaacggatgaatacgattaggtaaatgtgttgcgaattataaaacgagttatcgctcggtgtgtcggtgcttcgctgctatagttgcccagacggaactgttttggggagggggctgcctaatgtgatacttcgggttatatgtgttatgggcattgctgcggataatttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="9643" stop="8559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9343" g_stop="8859" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U591302" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9343" e_stop="8859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATAGAGAAACCAACCCTGCAACTCTTGGCCAGAAGCTGCAAATATTTTTGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCTATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTAGTGAATGTGCTAAGTATAAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATGAAAGCAAACTGCAGGGAAATTTTGTTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATATGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACTGAACTATTTTGGGGACGGGGCTGTTTAATATGATTCTTTGGGTTATATGTGTTATTGGTATTGCTGTGGATAATTTGGATTG</genome_strand>
        <mrna_strand>GGAAATGGAGAAACCAACCCTGCAACTCTTGGCCAGTAGCTGCAAATAATTTGGGGAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAACACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTTGCTTACGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGCTGAATGTGATTATGAGTATATACTCCAACGGATGAATACGATTAGGTAAATGTGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGGTGCTTCGCTGCTATAGTTGCCCAGACGGAACTGTTTTGGGGAGGGGGCTGCCTAATGTGATACTTCGGGTTATATGTGTTATGGGCATTGCTGCGGATAATTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601593" ref_strand="+" ref_description="SGN-U601593 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caggcaatatatggaaaacttttaaaacgataaaaagcaactaaatatattaaagagtataataacaaatcaatttatatataatataatataatctagctttgtgaaagtttctctaatttaaaacctactatgagcctaagtgatgatacaatgttttgcccacgctgccaaaacttttctatactttgtcgttatcttgaacatcttatctaagtgaatcgactattctgtgctcaaaacacataaagactcatctaaaaataatgattctttactacacatgatggctacatggtttatggagatttgagtttttcgaactcgcatccccattttggtgctcaatactactctcaaaatatatttatctcatatgtttctaaaaaatataattctttctttggtttgatataataactcaaaacttagcttaaaatttctcttggaatcgatgttgtctttcttgctcaaatgtgaatttttttttgaactctgtgggaatacatagtctcctatatacttattgaagaaaatgaattcaatctttactctttagtcaactcaatgcttaagtattaaaacaaagttaaaaagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="67109" stop="68310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67409" g_stop="68010" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-U601593" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67409" e_stop="68010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCAATATATGGAAAACTTTTAAAACGATAAAAAGCAACTAAATATATTAAAGAGTATAATAACAAATCAATTTATATATAATATAATATAATCTAGCTTTGTGAAAGTTTCTCTAATTTAAAACCTACTATGAGCCTAAGTGATGATACAATGTTTTGCCCACGCTGCCAAAACTTTTCTATACTTTGTCGTTATCTTGAACATCTTATCTAAGTGAATCGACTATTCTGTGCTCAAAACACATAAAGACTCATCTAAAAATAATGATTCTTTACTACACATGATGGCTACATGGTTTATGGAGATTTGAGTTTTTCGAACTCGCATCCCCATTTTGGTGCTCAATACTACTCTCAAAATATATTTATCTCATATGTTTCTAAAAAATATAATTCTTTCTTTGGTTTGATATAATAACTCAAAACTTAGCTTAAAATTTCTCTTGGAATCGATGTTGTCTTTCTTGCTCAAATGTGAATTTTTTTTTGAACTCTGTGGGAATACATAGTCTCCTATATACTTATTGAAGAAAATGAATTCAATCTTTACTCTTTAGTCAACTCAATGCTTAAGTATTAAAACAAAGTTAAAAAGTTTGT</genome_strand>
        <mrna_strand>CAGGCAATATATGGAAAACTTTTAAAACGATAAAAAGCAACTAAATATATTAAAGAGTATAATAACAAATCAATTTATATATAATATAATATAATCTAGCTTTGTGAAAGTTTCTCTAATTTAAAACCTACTATGAGCCTAAGTGATGATACAATGTTTTGCCCACGCTGCCAAAACTTTTCTATACTTTGTCGTTATCTTGAACATCTTATCTAAGTGAATCGACTATTCTGTGCTCAAAACACATAAAGACTCATCTAAAAATAATGATTCTTTACTACACATGATGGCTACATGGTTTATGGAGATTTGAGTTTTTCGAACTCGCATCCCCATTTTGGTGCTCAATACTACTCTCAAAATATATTTATCTCATATGTTTCTAAAAAATATAATTCTTTCTTTGGTTTGATATAATAACTCAAAACTTAGCTTAAAATTTCTCTTGGAATCGATGTTGTCTTTCTTGCTCAAATGTGAATTTTTTTTTGAACTCTGTGGGAATACATAGTCTCCTATATACTTATTGAAGAAAATGAATTCAATCTTTACTCTTTAGTCAACTCAATGCTTAAGTATTAAAACAAAGTTAAAAAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601050" ref_strand="+" ref_description="SGN-U601050 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205303|gb|ABI34335.1| (e_value=3e-28) Integrase; ">
      <seq>cacttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaaagtgtggcctgtgggtagagggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="79016" stop="77801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78717" g_stop="78101" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U601050" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78717" e_stop="78101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCGAAGGTGTTTCTCCCTGTTTCAGACTTCCTAGTACTTCAAGCTTTATTATTACGGGAGATTTTCTCTAATGTTTCAGCAATCTCAGCATAAGGACATTCCCCATAAGATCCACCTGCTATAGTGTCTAACACCGCTTTATTATTATCATCCTATCCCCGATAGAAGTATTCCTTCAGTGTCTCATCATCTATACGGTGATTTAGAACACTTCTCAAGAATGAGATGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGAGTGCTCAGAAAACATCCCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAATTCCTACTCAGGCCTCCCTACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAAAGTATGGCCTGTGGGTAGAGGAGGCA</genome_strand>
        <mrna_strand>CACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAAAGTGTGGCCTGTGGGTAGAGGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589884" ref_strand="+" ref_description="SGN-U589884 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="84824" stop="83526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84537" g_stop="83826" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U589884" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84537" e_stop="83826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCATTTCAAAACACTTGAACTCTTGGAATATGGGTACTGGGACTACTTCTCTGAACTTTATGACGAACCTGCAGGACAGACTGTCATAGACACGACGGACCGTCATGAACTCCGTTGCCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCTGCTGCACTATGCTGCCACCTACGGACCGTCACAAGCATGACGAACCGTCATAAGCTCCGTAGGTGGGATCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTTCAAAATAAAGAAAAAATTATATAAAAATTAG--C--AAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATGAACACCCTCAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTCATCCTTTGCAATCATTTGGCTATCAATCCTGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGATTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCGCTAACACCTATCCTCTTCAATTTCTCACTGAGGTTCTAACAATTCCGATATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTGC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589255" ref_strand="+" ref_description="SGN-U589255 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="91010" stop="89928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90710" g_stop="90228" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U589255" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90710" e_stop="90228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCATTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAGTTCCTTTATAGATTCAGGAATGGTTTACAATTTAAGAACAAGAGAATGTATTCCTAAACAACTAGACGAAAAGCTCCAGATATTGCTGTTGTTCTTGGAATAATTCTGTCTTTGCTTTGTAGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTTCCTTTTATATGAGCAAGGCACTTTCCTAAACTTCTTTGCCATTGGCTGAAAAGTCACACTTTTTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</genome_strand>
        <mrna_strand>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTAG-AGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTG-GAAGGGTCACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567319" ref_strand="+" ref_description="SGN-U567319 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345615|emb|CAO14913.1| (e_value=2e-95) unnamed; (*ATH) AT1G28110.2 (e_value=1e-63) | Symbol: None | serine carboxypeptidase S10 family protein, similar to H.vulgare gene encoding serine carboxypeptidase II, CP-MII GI:1731989 | chr1:9803628-9806883 REVERSE | Aliases: None; (*SWP) sp|Q93Y09|SCP45_ARATH (e_value=9e-63) Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45; ">
      <seq>cgaatggttccatggttgtgcatctttttttcttactggttgatctacaaatcaagtcgtgagcttataacttctcttcctggacaacctccaaatatattcttcaaacaacactctggttatattgttacaaattctcaaaatggtagagctctcttttattattttgtagaaccggattcagaaaatgcaacatcacttccccttactctgtggctcaatggaggccctggttgttcatctgtggggttcggtgtttgtatggaacatggtccatttcagccaggaaaagatgggagactaataaaaaacaagtattcttggaatttagaatcgaacatgctatacgttgagtccccgattggagtaggattttcatactcgaatacaagctcggactacgtcaattgcgatgatgttgcaacagcaaaggagaatctccaatttctactcaactggttagagaaattccccgaatataggaacttggatttgttcttagctggtgaaagttatgcaggtcactatattccacagcttacagtattgctgcttgattacaatagaaagcctaatgttaaaccaatcaagcttaaatcaattgcactggggaatccactactagatcttgaaataagcgttaagtcttccgaatatttatggtcacatggtgcgatttctgatgaattacttactatgaaaagaacaatctgtaacgaaaacgagttgttgttgggatcaatacatcataatatgtctaacgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="115262" stop="112813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114964" g_stop="114739" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114738" i_stop="114569" i_length="170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114568" g_stop="114464" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="331" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114463" i_stop="113946" i_length="518">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113945" g_stop="113850" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="427" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113849" i_stop="113760" i_length="90">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113759" g_stop="113667" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="520" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113666" i_stop="113445" i_length="222">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113444" g_stop="113359" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="606" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113358" i_stop="113277" i_length="82">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113276" g_stop="113113" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="770" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U567319" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114964" e_stop="114739"/>
          <exon e_start="114568" e_stop="114464"/>
          <exon e_start="113945" e_stop="113850"/>
          <exon e_start="113759" e_stop="113667"/>
          <exon e_start="113444" e_stop="113359"/>
          <exon e_start="113276" e_stop="113113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAGGTACATTTCTCCTATATTGCTCAGACTCTTCAAAAATATCGACATGTGTGTGTCAGATCGGACACATATACAATAACATTTTTCGAGAGTCCGAGCTATATAATATTGTATACCGCTTCTCTATTGACCTTTTTTTTTTCATTTGATATTGATTGAATCCATTATGTTAGGCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAGGTAATGTTTCTTTCTTCTTTAGGGTAGAATATTTAGTAGGTAGTTGAGCGTTGTCTCATTTCCTAGCATGATAGATTGGTGTATTGTATCTGTTTCTCGATTCTTTTTTTTTACCAGTAGTAGTAGCGTTTGTCTCATAGTTGGTCTATATTACGAGTTTTGTTACACCTCGTCATTTACTTACTGTGCTTCAGTTATCACATTAGTTGGTTATGTTGCCCCTCTTTGGTATGTTAGGTTATGATTTCCTTATCATATTCTATGTCCTCTTTACTTCTGTATTGTTCTATTAGCTGCTCTGATGTTCGTTATTTGAGCTGAGGGTCTTCCGGAAACAACCTCTCTACCTTCTTGAGGTAGTGGTAAGGTCTACGTACACTCTACCCTTCCCAGACGCCGCTTTTGGGACTATACTGGGATTGTTGTTGTTGTTATCCTGAATGATCATGTTGAAAAGATTTCATTGCCTTGAAAATCGGATAACAATGACTGATTTCGATTGCTATAACACGAAACAGAATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAGGTACACCACTTTTCCAGAAATAGCTAATAATATTTGGTACTAAAAGGCAACGGAAATGTCTGATTTTGCACCTTTTGATCTTTTATATAGCAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAGGTAATATATCTGAACTTTTATGTTGCTGAGACTCTCCAAAAACTTGTCACACCCGTGTCAGATTCCTCCAAAAGTAGTACATAGAGAATCCATTTGGAGGATCCGACACACAATGTTGACATTTTTGAAGAGTACGAACAACAGAAGACTTAACTCGCCTATGTTTTTTGTTCTTTCGGTTGTAAAGATTCGTCAACTGTTCTGTTTTTGTTTTTTTTTTAGGTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCAGTAATGTCTACATTACCCTTAAACTTCTTGTTGATTAATTGTTTTATATTCGAATCTGGGTTATATCCAATGACTTTTGCAGCTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAACGAGGTTGTTGTTGGAATCAATACATCATAATATGTCTAACGAGTGCTC</genome_strand>
        <mrna_strand>CGAATGGTTCCATGGTTGTGCATCTTTTTTTCTTACTGGTTGATCTACAAATCAAGTCGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAACCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG..........................................................................................................................................................................GCCCTGGTTGTTCATCTGTGGGGTTCGGTGTTTGTATGGAACATGGTCCATTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAACATGCTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGCGATGATGTTGCAACAG..........................................................................................CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAG..............................................................................................................................................................................................................................GTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCA..................................................................................CTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAAACGAGTTGTTGTTGGGATCAATACATCATAATATGTCTAACGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590594" ref_strand="+" ref_description="SGN-U590594 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205313|gb|AAT38742.2| (e_value=2e-14) 'chromo'; ">
      <seq>gagatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagctgcntgcagcaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="132545" stop="133815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132845" g_stop="133515" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-U590594" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132845" e_stop="133515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAGAGTACAACATGCAGCTGTTGTGGCTCCCCACATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGGGCCTATAATAACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTGGAACGATTCGGTGTTGAGTTTGTAAGCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGTATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGATTGGATTCGCCATTTTGTAAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCTAC-TGCAGCAAAATC</genome_strand>
        <mrna_strand>GAGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCTGCNTGCAGCAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="134712" stop="133788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134413" g_stop="134088" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134413" e_stop="134088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTGTAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTGCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACTACTAGAAAATAAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592023" ref_strand="+" ref_description="SGN-U592023 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-56) Putative; ">
      <seq>ttacttcggcacgaggatttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="133810" stop="135054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134110" g_stop="134455" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="360" r_length="344" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134456" i_stop="134505" i_length="50">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134506" g_stop="134754" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="617" r_length="257" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-U592023" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134110" e_stop="134455"/>
          <exon e_start="134506" e_stop="134754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCCTGGATCCACATTTTCATATGTATCTTCCTTATTTTCTAGTAGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTAGGTGAGTCTGTGATAGTTGCAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTACAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTTCTAAGAGAATGGTTCCAGTTCGTATCATCTCCTT---T-C-TTC---GTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGATTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCGGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGACCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAA</genome_strand>
        <mrna_strand>ATTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATC..................................................ATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575265" ref_strand="+" ref_description="SGN-U575265 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-65) Polyprotein,; (*SWP) sp|P04323|POL3_DROME (e_value=2e-11) Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol; ">
      <seq>ggcctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136533" stop="135347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136234" g_stop="135647" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U575265" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136234" e_stop="135647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAATTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTCCTCTAGTACTTCCAGCCTCTTAAAGTCATTAGCCAGAGCCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCTCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTAAGTAAAGACATACTGTAAACTACGGTGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCTGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCATCTTTAATTG</genome_strand>
        <mrna_strand>GGCCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595872" ref_strand="+" ref_description="SGN-U595872 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-95) Polyprotein,; (*SWP) sp|Q7LHG5|YI31B_YEAST (e_value=9e-27) Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I; ">
      <seq>gtccgagataaggtgttgcgaggagaggctaaagaagcaaaaatcaatgaggaatgtgttttgagaattaagggaagggtatgtgtaccccgcaccgatgatttgattcacactattcttacggaggctcatagttcaaggtattctatacatcctggtgcaaccaagatgtatcgtgacctaaagcaacatttttggtggagtaggatgaagcgtgacattgttgattttgttgctcaatgcccgaattgtcagcaagtaaagtatgaacaccaaaggcctggagggacacttcagagaatgcccattcctgaatggaagtgggagagaattgaaatggacttcgtggttggtctccaaagacaatgggtaagtatgacaccatatgggtaattgttgacagattaactaagtctgctcatttcattccggtcaaagtgacttataatgcagagaagttagccaaactttacatctcagaaattgtttgattgcatggaattccactttccattatatcagatagagttacgcagtttacttctaaattttggaaaacattgcatgccgagttaggtactaggttagatcttagtactgcattttaccctcagaccgatggtcagtctgagcgaataatttangtcttggaggatatgcttcgtgcatgtgtgatagaatttagtggncattgggataacttcttacncttagcanaattctcatacnacaatagctatcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="135807" stop="137152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136106" g_stop="136852" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-U595872" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136106" e_stop="136852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGAGATAAGGTATTGTGAGGAGAGGCTAAAGAAGCAAAAATCGATGAGGAAGGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATTCACACTATTCTGACAAAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTGGATTTTGTTGCTCAATGCCCGAATTGTCAGAAGGTAAAGTATGAACACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAATGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGATTCTACTTGGGTAATTGTTGACAGATTAACTAAATCTGCTCACTTCATTCCGGTCAAGGTGACTTATAATGCAGAGAAGTTAGCCAAACTCTACATCTCAAAAATTGTTCGATTGCATGGGGTTCCACTCTCCATCATATCAGATAGAGGTACGTAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCTGAATTGGGTACTAGGTTGGATCTTAGTACTGCATTTCACCCTCAGACCGATGGTCAGTCTGAGAGAACGATTCAGGTTTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTGGTGATCATTGGGATAACTACTTACCCTTAGCAGATTTCTCATACAACAATAGTTATCACTCA</genome_strand>
        <mrna_strand>GTCCGAGATAAGGTGTTGCGAGGAGAGGCTAAAGAAGCAAAAATCAATGAGGAATGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCACCGATGATTTGATTCACACTATTCTTACGGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTTGATTTTGTTGCTCAATGCCCGAATTGTCAGCAAGTAAAGTATGAACACCAAAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGAAATGGACTTCGTGGTTGGTC-TCCAAAGACAATGGGTAAGTATGACACCATATGGGTAATTGTTGACAGATTAACTAAGTCTGCTCATTTCATTCCGGTCAAAGTGACTTATAATGCAGAGAAGTTAGCCAAACTTTACATCTCAGAAATTGTTTGATTGCATGGAATTCCACTTTCCATTATATCAGATAGAGTTACGCAGTTTACTTCTAAATTTTGGAAAACATTGCATGCCGAGTTAGGTACTAGGTTAGATCTTAGTACTGCATTTTACCCTCAGACCGATGGTCAGTCTGAGCGAATAATTTANGTCTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTAGTGGNCATTGGGATAACTTCTTACNCTTAGCANAATTCTCATACNACAATAGCTATCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595870" ref_strand="+" ref_description="SGN-U595870 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=4e-63) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=4e-20) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>ctcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136977" stop="135884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136678" g_stop="136184" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U595870" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136678" e_stop="136184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTTTGAGATGTAGAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAGTGAGCAGATTTAGTTAATCTGTCAACAATTACCCAAGTAGAATCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTTCTGACAATTCGGGCATTGAGCAACAAAATCCACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</genome_strand>
        <mrna_strand>CTCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136984" stop="135892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136684" g_stop="136192" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136684" e_stop="136192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTTTGAGATGTAGAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAGTGAGCAGATTTAGTTAATCTGTCAACAATTACCCAAGTAGAATCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTTCTGACAATTCGGGCATTGAGCAACAAAATCCACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569557" ref_strand="+" ref_description="SGN-U569557 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gaagaattgttgaaagctgaaattgttatgtacacgtacgtgtccatggattttcttcttaaccatacacatatattgatgtcatttcacaaaaaaatattctgttcaaactcagtttcgaccataatgatgttttgattgtcagatgatgtgttcgatttgcagtctcctttttgttcacatcatcttgtaataatggtcaagtgctgggagttttcgtgttctttgtacttgtatgtagaggggttccaatgtagaatatccatctcggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="141727" stop="140856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141428" g_stop="141156" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U569557" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141428" e_stop="141156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTGTTGAAAGCTGAAATTGTTATGTACACGTACGTGTCCATGGATTTTCTTCTTAACCATACATATATATTGATGTCATTTCAC-AAAAAATATTCTGTTCAAACTCAGTTTCGACCATAATGATGTTTTGATTGTCAGACGATGTGTTCGATTTGCAGTCTCCTTTTTGTTCACATCATCTTGTAATAATGGTCAAGTGCTGGGAGTTTTCGTGTTCTTTGTACTTGTATGTAGAGGGGTTCCAATGTAGAATATCCATCTCTGCAG</genome_strand>
        <mrna_strand>GAAGAATTGTTGAAAGCTGAAATTGTTATGTACACGTACGTGTCCATGGATTTTCTTCTTAACCATACACATATATTGATGTCATTTCACAAAAAAATATTCTGTTCAAACTCAGTTTCGACCATAATGATGTTTTGATTGTCAGATGATGTGTTCGATTTGCAGTCTCCTTTTTGTTCACATCATCTTGTAATAATGGTCAAGTGCTGGGAGTTTTCGTGTTCTTTGTACTTGTATGTAGAGGGGTTCCAATGTAGAATATCCATCTCGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563920" ref_strand="+" ref_description="SGN-U563920 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147867174|emb|CAN78397.1| (e_value=3e-16) hypothetical; ">
      <seq>gcaacaacatagatacctgtattgaagagcctttgatagaccaattgaagcaaccaatgaaattttttaatagaatggaaattggaaagctcattgcatgcaaaagacaaaagcctgatcaactgtctaataacgctttgacatctgcactcaatgatactggaaatgaaccgagttacagctccagccaccctgcttatgcatgctgtccagaggagatcccgtgtcttgtgacgggaaactgtgttaattatcctttccttggtatgttgcaccacacagacaccagaacagatatggggtcttgctccaaaccacaagtgagaagggcattgctggaatttaagtctgaagctttatctgtttatgagaggttaaaaattggtggtcattaccttataaaccatcagaaagaagatatgtttggtactgatgcaatagttgtgaattcgggaacctacatttggagcatttctttttcatctgctaatgttcaccaaaattttgatgtatcctgcttgcttcaacagtccggttcctttttaagtcacaataatgatcttccagaaagctatcatcagtttcaaattccaaactctttgcctaatggaagcaatgatatctcttcagatgtcaacttatatatgccatctgatgtcacaaacttatttaatgttaacttggtgttgttggagaactgttctctctagcctcttattccatttggagaaatgaccaacatctgcccctctgatcataatttgccagagggaaacctaacatctattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="156035" stop="154545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155735" g_stop="155365" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155364" i_stop="155264" i_length="101">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155263" g_stop="154845" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="790" r_length="419" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U563920" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155735" e_stop="155365"/>
          <exon e_start="155263" e_stop="154845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAACATAGATACCTGTATTGAAGAGCCTTTGATAGACCAATTGAAGCAACCAATGAAATTTTTTAATAGAATGGAAATTGGAAAGCTCATTGCATGCAAAAGACAAAAGCCTGATCAACTGTCTAATAACGCTTTGACATCTGCACTCAATGATACTGGAAATGAACCGAGTTACAGCTCCAGCCACCCTGCTTATGCATGCTGTCCAGAGGAGATCCCGTGTCTTGTGACGGGAAACTGTGTTAATTATCCTTTCCTTGGTATGTTGCACCACACAGACACCAGAACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATTTGTTTATGAGGTATGCCATTTCATTTCTGTTTGTTCTGATGTCTGGCATATTTATGACATACAATTTAAGTTAAACAACATAAACACAACTTTTGTTCATTGATGTTGCAGAGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACTTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAGGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGTTAACTTGGTGTTGTTGGAGAACTGTTCTCTCGAGCCTCTTATTCCATTTGGAGAAATGACCAACATCTGCCCCTCTGATCATAATTTGCCAGAGGGAAACCTAACCTCTATTCA</genome_strand>
        <mrna_strand>GCAACAACATAGATACCTGTATTGAAGAGCCTTTGATAGACCAATTGAAGCAACCAATGAAATTTTTTAATAGAATGGAAATTGGAAAGCTCATTGCATGCAAAAGACAAAAGCCTGATCAACTGTCTAATAACGCTTTGACATCTGCACTCAATGATACTGGAAATGAACCGAGTTACAGCTCCAGCCACCCTGCTTATGCATGCTGTCCAGAGGAGATCCCGTGTCTTGTGACGGGAAACTGTGTTAATTATCCTTTCCTTGGTATGTTGCACCACACAGACACCAGAACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATCTGTTTATGAG.....................................................................................................AGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACCTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAAGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGTTAACTTGGTGTTGTTGGAGAACTGTTCTCTCTAGCCTCTTATTCCATTTGGAGAAATGACCAACATCTGCCCCTCTGATCATAATTTGCCAGAGGGAAACCTAACATCTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589391" ref_strand="+" ref_description="SGN-U589391 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|218694563|ref|YP_002402230.1| (e_value=1e-106) transposase,; ">
      <seq>atcctgcacagcgctaatacatcgcctcatagtttccccaatatctacccatgtgtgaatatattttgagtaagcagggttgcagccacgaatgagtcttcccttgttattgtgtagccagaatgccgcaaaacttccatgcctaatccaactgttgagagtacgtttcaatttctgactgtgttagcctggaaatgcttgtcccagccttgtttctgaccgtgaacgcgccgccagccaacatgttagttgaagacatgcagggcgattagcaacatgatatcaaaacgctctgagctgctcgttcggctatggcgtaagcctagtccgtatgcaggacttttcaagtctcggaaggtttcttcaatctgcattcgcttccaatagatattaacaagttgtttgggtgttcgaatttcaacaggtaagttaattgctagaatccatggctcctttgccaacgctgagtagattttaggtgacgggtggtgacaatgagtccgtgtcgagcgctgattttttcggcctttacagcgagatttatacaataaaatttggcatgagattggattgcttttagtcagcctcttatagcctaaagtctttgagtgactaaatgacatatcatgtaagttgctgataggtttccagttttccgctcctaggtctgcatattgtacttttcctcctactcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="159181" stop="160474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159479" g_stop="160174" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-U589391" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159479" e_stop="160174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATACAAAGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGC-CCGCAAGCCAACATGTTAGTTGAAG-CAT-CAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTT</genome_strand>
        <mrna_strand>ATCCTGCACAGCGCTAATACATCGCCTCATAGTTTCCCCAATATCTACCCATGTGTGAATATATTTTGAGTAAGCAGGGTTGCAGCCACGAATGAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAATCCAACTGTTGAGAGTACGTTTCAATTTCTGACTGTGTTAGCCTGGAAATGCTTGTCCCAGCCTTGTTTCTGACCGTGAACGCGCCGCCAGCCAACATGTTAGTTGAAGACATGCAGGGCGATTAGCAACATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAAGCCTAGTCCGTATGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCCAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAATTGCTAGAATCCATGGCTCCTTTGCCAACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTACAGCGAGATTTATACAATAAAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAAATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCCTACTCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589393" ref_strand="+" ref_description="SGN-U589393 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|151940600|gb|EDN59046.1| (e_value=9e-71) hypothetical; ">
      <seq>ggttaccactggaagcgcttgacccaaccttgttgtatgcatcatgaacgccctcttgctcatcatgttagttgaagcatcacggcgagttaggcatcgatgatatcaaaacgctctgagctgctcgttcagttaatggcgtatgccatagtccgtaggcaggacttttgaagatctcggaaggtttcttcaatctgcattcgcctctgaatagatattaacaagttgtttgggtgttcgaatttcaacaggtaagttagttgctagaacccatggctcctttgccgacgctgagtagattttaggtgacgggtggtgacaatgagtccgtgtcgagcgctgattttttcggcctttagagcgagatttatacaatagaatttggcatgagattggattgcttttagtcagcctcttatagcctaaagtctttgagtgactagatgacatatcatgtaagttgctgataggtttccagttttccgctcctaggtctgcatattgtacttttcctcttactcgacttaaccagtaccaacccagcttctcaacgggattataccatggcactttaaagccagcatcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="159361" stop="160538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159666" g_stop="160238" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="590" r_length="583" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-U589393" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159666" e_stop="160238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAAGTGCTTGTCCCAACCTTGTT-TCTG-AGCATGAACGCCCGCAAGC-CAACATGTTAGTTGAAGCATCAGGGCGA-TTA-GCAGC-ATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCT-ATGGCGTAGGCC-TAGTCCGTAGGCAGGACTTTTCAAG-TCTCGGAAGGTTTCTTCAATCTGCATTCGCTTC-GAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGA</genome_strand>
        <mrna_strand>ACTGGAAGCGCTTGACCCAACCTTGTTGTATGCATCATGAACGCCCTCTTGCTCATCATGTTAGTTGAAGCATCACGGCGAGTTAGGCATCGATGATATCAAAACGCTCTGAGCTGCTCGTTCAGTTAATGGCGTATGCCATAGTCCGTAGGCAGGACTTTTGAAGATCTCGGAAGGTTTCTTCAATCTGCATTCGCCTCTGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGGATTATACCATGGCACTTTAAAGCCAGCATCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604818" ref_strand="+" ref_description="SGN-U604818 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116267070|gb|ABJ96340.1| (e_value=3e-56) transposase; ">
      <seq>ataatcagacaacacttgtgcaaaatcgatcttttaacctaatctacttttacccttctgccccgatttacacttatcaacgactcaacttcttaacgatggcttgccacgccttacttgactgaataactctcactcttaactaacttggacgtaacctgccaaccatatctatatctaaacataacatcttactaatctaccgattgttacgtaatcgtctcctccacaaagagcgactcgctgtataccgttggcatgctagctttatctgttcgggcaatacgatgcccattgtacttgttgactggtctgatatccgtgagcaaaaacggcttatggtattgcgagcttcagtcgcactacacggtcgttctgttactctttatgagaaagcgttcccgctttcagagcaatgttcaaagaaagctcatgaccaatttctagccgaccttgcgagcattctaccgagtaacaccacaccgctcattgtcagtgatgctggctttaaaagtgccatggtataaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="160952" stop="159901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160729" g_stop="160200" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U604818" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160729" e_stop="160200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCT-CTTTACCAATTCTGCCCCGAATTACACTTA-AAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTT-AAAGTGCCATGGTATAAATCCG</genome_strand>
        <mrna_strand>ATAATCAGACAAC-ACTTGTGCAAAATCGATCTTTTAACCTAATCTACTTTTACCCTTCTGCCCCGATTTACACTTATCAACGACTCAACTTCTTAACGATGGCTTGCCACGCCTTACTTGACTGAATAACTCTCACTCTTAACTAACTTGGACGTAACCTGCCAACCATATCTATATCTAAACATAACATCTTACTAATCTACCGATTGTTACGTAATCGTCTCCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAAGTGCCATGGTATAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604614" ref_strand="+" ref_description="SGN-U604614 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205155|gb|ABI34274.1| (e_value=3e-45) IS10; ">
      <seq>aatcgtaagattaaggtaaatgacatacttgtcagatgatccaatggatacaccacaaatctataatcagacaacaaatatgtgcgaactcgatattttacacgactctcgttaccgattctgccccgaattacacttaagacgactcaacagcttaacgttggcttgccacgccttacttgactgtaaaactctcactcttaccgaacttggccgtaacctgccaaccaaagcgagaacaaaacataacatcaaacgaatcgaccgattgttaggtaatcgtcacctccacaaagagcgactcgctgtataccgttggcatgctagctttaactgttccggcacaaagacgcccactgtacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="161068" stop="160129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160791" g_stop="160429" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U604614" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160791" e_stop="160429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTAAGTTAAGGTAGATACACAT-CTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAA-ATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTT</genome_strand>
        <mrna_strand>AATCGTAAGATTAAGGTAAAT-GACATACTTGTCAGATGATCCAATGGATACACCACAAATCTATAATCAGACAACAAATATGTGCGAACTCGATATTTTACACGACTCTCGTTACCGATTCTGCCCCGAATTACACTTAAGACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTAACTGTTCCGGCACAAAGACGCCCACTGTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600659" ref_strand="+" ref_description="SGN-U600659 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|209947532|ref|YP_002291029.1| (e_value=1e-21) hypothetical; ">
      <seq>ctgatgaatcccctaatgatttttatcaaaatcattaaattaaggtatatacacatcttgtcatatgatcacatggtttcgccaaaaatcaataatcatacaaccaaatgtgctaactccatattttacacgactctctttaccaattctgccccctattacacttaaatcgactcaacagcttatcgttggcttgccacgccttacttgactgtaaaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="161120" stop="160298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160820" g_stop="160598" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-U600659" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160820" e_stop="160598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCT</genome_strand>
        <mrna_strand>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAATTAAGGTATATACACATCTTGTCATATGATCACATGGTTTCGCCAAAAATCAATAATCATACAACCAAATGTGCTAACTCCATATTTTACACGACTCTCTTTACCAATTCTGCCCCCTATTACACTTAAATCGACTCAACAGCTTATCGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9343" PGL_stop="8859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9343" e_stop="8859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="9343" e_stop="8859" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9343" stop="8859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAATAGAGAAACCAACCCTGCAACTCTTGGCCAGAAGCTGCAAATATTTTTGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCTATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTAGTGAATGTGCTAAGTATAAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATGAAAGCAAACTGCAGGGAAATTTTGTTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATATGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACTGAACTATTTTGGGGACGGGGCTGTTTAATATGATTCTTTGGGTTATATGTGTTATTGGTATTGCTGTGGATAATTTGGATTG</gDNA_template>
            <first_frame> G  N  R  E  T  N  P  A  T  L  G  Q  K  L  Q  I  F  L  L  V  I  S  L  F  G  V  L  I  L  *  N  T  L  V  N  Y  L  L  I  L  R  R  G  R  D  Q  *  L  R  K  F  V  L  V  S  E  C  A  K  Y  K  W  K  P  *  S  D  Y  *  W  C  R  V  G  A  W  A  V  L  M  K  A  N  C  R  E  I  L  F  W  H  Y  V  Y  V  E  C  D  Y  E  Y  I  L  Q  R  M  N  T  I  R  *  I  C  C  E  L  *  N  E  L  S  L  G  V  S  L  L  R  C  Y  G  C  R  D  *  T  I  L  G  T  G  L  F  N  M  I  L  W  V  I  C  V  I  G  I  A  V  D  N  L  D   </first_frame>
            <second_frame>  E  I  E  K  P  T  L  Q  L  L  A  R  S  C  K  Y  F  C  *  *  S  P  C  L  V  C  *  F  F  R  I  P  L  L  I  I  Y  *  F  *  E  G  G  V  T  S  S  L  G  S  L  F  *  L  V  N  V  L  S  I  N  G  N  H  N  R  I  I  S  G  V  V  L  V  L  G  L  F  *  *  K  Q  T  A  G  K  F  C  F  G  I  M  Y  M  L  N  V  I  M  S  I  Y  S  K  G  *  I  R  *  G  R  Y  V  A  N  Y  K  T  S  Y  R  S  V  C  R  C  F  A  A  M  V  A  E  T  E  L  F  W  G  R  G  C  L  I  *  F  F  G  L  Y  V  L  L  V  L  L  W  I  I  W  I  </second_frame>
            <third_frame>   K  *  R  N  Q  P  C  N  S  W  P  E  A  A  N  I  F  V  S  N  L  L  V  W  C  V  N  S  L  E  Y  P  C  *  L  S  I  N  F  K  K  G  A  *  P  V  A  *  E  V  C  F  S  *  *  M  C  *  V  *  M  E  T  I  I  G  L  L  V  V  S  C  W  C  L  G  C  F  D  E  S  K  L  Q  G  N  F  V  L  A  L  C  I  C  *  M  *  L  *  V  Y  T  P  K  D  E  Y  D  K  V  D  M  L  R  I  I  K  R  V  I  A  R  C  V  V  A  S  L  L  W  L  P  R  L  N  Y  F  G  D  G  A  V  *  Y  D  S  L  G  Y  M  C  Y  W  Y  C  C  G  *  F  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="67409" PGL_stop="68010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67409" e_stop="68010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67409" e_stop="68010" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67409" stop="68010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGCAATATATGGAAAACTTTTAAAACGATAAAAAGCAACTAAATATATTAAAGAGTATAATAACAAATCAATTTATATATAATATAATATAATCTAGCTTTGTGAAAGTTTCTCTAATTTAAAACCTACTATGAGCCTAAGTGATGATACAATGTTTTGCCCACGCTGCCAAAACTTTTCTATACTTTGTCGTTATCTTGAACATCTTATCTAAGTGAATCGACTATTCTGTGCTCAAAACACATAAAGACTCATCTAAAAATAATGATTCTTTACTACACATGATGGCTACATGGTTTATGGAGATTTGAGTTTTTCGAACTCGCATCCCCATTTTGGTGCTCAATACTACTCTCAAAATATATTTATCTCATATGTTTCTAAAAAATATAATTCTTTCTTTGGTTTGATATAATAACTCAAAACTTAGCTTAAAATTTCTCTTGGAATCGATGTTGTCTTTCTTGCTCAAATGTGAATTTTTTTTTGAACTCTGTGGGAATACATAGTCTCCTATATACTTATTGAAGAAAATGAATTCAATCTTTACTCTTTAGTCAACTCAATGCTTAAGTATTAAAACAAAGTTAAAAAGTTTGT</gDNA_template>
            <first_frame> H  A  I  Y  G  K  L  L  K  R  *  K  A  T  K  Y  I  K  E  Y  N  N  K  S  I  Y  I  *  Y  N  I  I  *  L  C  E  S  F  S  N  L  K  P  T  M  S  L  S  D  D  T  M  F  C  P  R  C  Q  N  F  S  I  L  C  R  Y  L  E  H  L  I  *  V  N  R  L  F  C  A  Q  N  T  *  R  L  I  *  K  *  *  F  F  T  T  H  D  G  Y  M  V  Y  G  D  L  S  F  S  N  S  H  P  H  F  G  A  Q  Y  Y  S  Q  N  I  F  I  S  Y  V  S  K  K  Y  N  S  F  F  G  L  I  *  *  L  K  T  *  L  K  I  S  L  G  I  D  V  V  F  L  A  Q  M  *  I  F  F  *  T  L  W  E  Y  I  V  S  Y  I  L  I  E  E  N  E  F  N  L  Y  S  L  V  N  S  M  L  K  Y  *  N  K  V  K  K  F   </first_frame>
            <second_frame>  M  Q  Y  M  E  N  F  *  N  D  K  K  Q  L  N  I  L  K  S  I  I  T  N  Q  F  I  Y  N  I  I  *  S  S  F  V  K  V  S  L  I  *  N  L  L  *  A  *  V  M  I  Q  C  F  A  H  A  A  K  T  F  L  Y  F  V  V  I  L  N  I  L  S  K  *  I  D  Y  S  V  L  K  T  H  K  D  S  S  K  N  N  D  S  L  L  H  M  M  A  T  W  F  M  E  I  *  V  F  R  T  R  I  P  I  L  V  L  N  T  T  L  K  I  Y  L  S  H  M  F  L  K  N  I  I  L  S  L  V  *  Y  N  N  S  K  L  S  L  K  F  L  L  E  S  M  L  S  F  L  L  K  C  E  F  F  F  E  L  C  G  N  T  *  S  P  I  Y  L  L  K  K  M  N  S  I  F  T  L  *  S  T  Q  C  L  S  I  K  T  K  L  K  S  L  </second_frame>
            <third_frame>   C  N  I  W  K  T  F  K  T  I  K  S  N  *  I  Y  *  R  V  *  *  Q  I  N  L  Y  I  I  *  Y  N  L  A  L  *  K  F  L  *  F  K  T  Y  Y  E  P  K  *  *  Y  N  V  L  P  T  L  P  K  L  F  Y  T  L  S  L  S  *  T  S  Y  L  S  E  S  T  I  L  C  S  K  H  I  K  T  H  L  K  I  M  I  L  Y  Y  T  *  W  L  H  G  L  W  R  F  E  F  F  E  L  A  S  P  F  W  C  S  I  L  L  S  K  Y  I  Y  L  I  C  F  *  K  I  *  F  F  L  W  F  D  I  I  T  Q  N  L  A  *  N  F  S  W  N  R  C  C  L  S  C  S  N  V  N  F  F  L  N  S  V  G  I  H  S  L  L  Y  T  Y  *  R  K  *  I  Q  S  L  L  F  S  Q  L  N  A  *  V  L  K  Q  S  *  K  V  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="78717" PGL_stop="78101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78717" e_stop="78101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="78717" e_stop="78101" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78717" stop="78101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTGCGAAGGTGTTTCTCCCTGTTTCAGACTTCCTAGTACTTCAAGCTTTATTATTACGGGAGATTTTCTCTAATGTTTCAGCAATCTCAGCATAAGGACATTCCCCATAAGATCCACCTGCTATAGTGTCTAACACCGCTTTATTATTATCATCCTATCCCCGATAGAAGTATTCCTTCAGTGTCTCATCATCTATACGGTGATTTAGAACACTTCTCAAGAATGAGATGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGAGTGCTCAGAAAACATCCCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAATTCCTACTCAGGCCTCCCTACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAAAGTATGGCCTGTGGGTAGAGGAGGCA</gDNA_template>
            <first_frame> Y  C  E  G  V  S  P  C  F  R  L  P  S  T  S  S  F  I  I  T  G  D  F  L  *  C  F  S  N  L  S  I  R  T  F  P  I  R  S  T  C  Y  S  V  *  H  R  F  I  I  I  I  L  S  P  I  E  V  F  L  Q  C  L  I  I  Y  T  V  I  *  N  T  S  Q  E  *  D  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  I  H  S  V  F  V  V  *  F  L  G  D  R  I  V  E  C  S  E  N  I  P  *  F  V  P  S  E  D  *  V  V  W  E  L  S  E  P  Y  S  S  L  S  R  Q  *  E  R  K  H  S  E  P  Y  Y  I  *  F  L  L  R  P  P  Y  T  T  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  R  R  *  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K  S  M  A  C  G  *  R  R   </first_frame>
            <second_frame>  T  A  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  L  R  E  I  F  S  N  V  S  A  I  S  A  *  G  H  S  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  Y  P  R  *  K  Y  S  F  S  V  S  S  S  I  R  *  F  R  T  L  L  K  N  E  M  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  S  A  Q  K  T  S  L  N  L  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  S  P  I  T  S  N  S  Y  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  G  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T  K  V  W  P  V  G  R  G  G  </second_frame>
            <third_frame>   L  R  R  C  F  S  L  F  Q  T  S  *  Y  F  K  L  Y  Y  Y  G  R  F  S  L  M  F  Q  Q  S  Q  H  K  D  I  P  H  K  I  H  L  L  *  C  L  T  P  L  Y  Y  Y  H  P  I  P  D  R  S  I  P  S  V  S  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  Y  S  L  C  L  C  G  L  V  S  W  R  P  D  S  R  V  L  R  K  H  P  L  I  C  S  K  *  R  L  S  C  M  G  A  Q  *  T  I  *  Q  P  L  P  S  V  R  E  E  T  L  *  A  L  L  H  L  I  P  T  Q  A  S  L  H  N  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  P  Q  K  V  A  L  K  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  K  Y  G  L  W  V  E  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78389" stop="78102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAQKTSLNLFQVKIELYGSSVNHIAASPVSERGNTLSPITSNSYSGLPTQLLHTALTLAIWACGSSEGSPENKPLAVSICIRLLVTTKVWPVGRGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="84537" PGL_stop="83826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84537" e_stop="83826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="84537" e_stop="83826" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84537" stop="83826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCATTTCAAAACACTTGAACTCTTGGAATATGGGTACTGGGACTACTTCTCTGAACTTTATGACGAACCTGCAGGACAGACTGTCATAGACACGACGGACCGTCATGAACTCCGTTGCCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCTGCTGCACTATGCTGCCACCTACGGACCGTCACAAGCATGACGAACCGTCATAAGCTCCGTAGGTGGGATCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTTCAAAATAAAGAAAAAATTATATAAAAATTAGCAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATGAACACCCTCAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTCATCCTTTGCAATCATTTGGCTATCAATCCTGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGATTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCGCTAACACCTATCCTCTTCAATTTCTCACTGAGGTTCTAACAATTCCGATATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTGC</gDNA_template>
            <first_frame> R  G  S  S  F  Q  N  T  *  T  L  G  I  W  V  L  G  L  L  L  *  T  L  *  R  T  C  R  T  D  C  H  R  H  D  G  P  S  *  T  P  L  P  H  T  W  S  D  F  P  I  F  L  Q  L  L  H  Y  A  A  T  Y  G  P  S  Q  A  *  R  T  V  I  S  S  V  G  G  I  F  C  I  S  L  L  K  I  S  A  F  I  F  G  Q  I  S  F  K  I  K  K  K  L  Y  K  N  *  Q  R  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  E  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  V  S  M  F  H  P  L  Q  S  F  G  Y  Q  S  *  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  A  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  I  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  H  F  K  T  L  E  L  L  E  Y  G  Y  W  D  Y  F  S  E  L  Y  D  E  P  A  G  Q  T  V  I  D  T  T  D  R  H  E  L  R  C  P  T  L  G  Q  T  S  P  S  S  F  S  C  C  T  M  L  P  P  T  D  R  H  K  H  D  E  P  S  *  A  P  *  V  G  S  S  A  F  L  C  S  K  S  P  H  S  S  L  D  R  F  P  S  K  *  R  K  N  Y  I  K  I  S  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  M  N  T  L  N  L  N  L  L  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  D  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  L  R  F  *  Q  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  C </second_frame>
            <third_frame>   R  V  F  I  S  K  H  L  N  S  W  N  M  G  T  G  T  T  S  L  N  F  M  T  N  L  Q  D  R  L  S  *  T  R  R  T  V  M  N  S  V  A  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  C  C  H  L  R  T  V  T  S  M  T  N  R  H  K  L  R  R  W  D  L  L  H  F  F  A  Q  N  L  R  I  H  L  W  T  D  F  L  Q  N  K  E  K  I  I  *  K  L  A  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  *  T  P  S  T  *  I  C  C  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  S  I  H  V  S  S  F  A  I  I  W  L  S  I  L  I  N  L  I  K  S  M  H  A  I  T  I  R  I  E  L  C  G  I  R  T  *  H  R  L  T  M  R  *  H  L  S  S  S  I  S  H  *  G  S  N  N  S  D  I  A  T  S  V  L  T  L  K  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84536" stop="84321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLHFKTLELLEYGYWDYFSELYDEPAGQTVIDTTDRHELRCPTLGQTSPSSFSCCTMLPPTDRHKHDEPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84439" stop="84227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVMNSVAPHLVRLPHLPSAAALCCHLRTVTSMTNRHKLRRWDLLHFFAQNLRIHLWTDFLQNKEKII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="90710" PGL_stop="90228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90710" e_stop="90228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="90710" e_stop="90228" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90710" stop="90228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCATTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAGTTCCTTTATAGATTCAGGAATGGTTTACAATTTAAGAACAAGAGAATGTATTCCTAAACAACTAGACGAAAAGCTCCAGATATTGCTGTTGTTCTTGGAATAATTCTGTCTTTGCTTTGTAGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTTCCTTTTATATGAGCAAGGCACTTTCCTAAACTTCTTTGCCATTGGCTGAAAAGTCACACTTTTTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</gDNA_template>
            <first_frame> Q  S  F  S  L  I  F  K  S  K  S  K  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  I  K  Q  *  S  S  I  A  *  Q  A  *  V  E  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  *  H  N  T  P  V  P  L  *  I  Q  E  W  F  T  I  *  E  Q  E  N  V  F  L  N  N  *  T  K  S  S  R  Y  C  C  C  S  W  N  N  S  V  F  A  L  *  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  K  Q  K  C  L  G  K  F  L  L  Y  E  Q  G  T  F  L  N  F  F  A  I  G  *  K  V  T  L  F  D  A  I  G  K  C  A  P  T  F  C  T  V  S  S </first_frame>
            <second_frame>  N  R  F  H  *  S  S  K  A  K  V  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  S  P  L  L  L  N  K  P  K  *  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  F  N  T  T  H  Q  F  L  Y  R  F  R  N  G  L  Q  F  K  N  K  R  M  Y  S  *  T  T  R  R  K  A  P  D  I  A  V  V  L  G  I  I  L  S  L  L  C  S  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  N  K  N  V  *  E  S  S  F  Y  M  S  K  A  L  S  *  T  S  L  P  L  A  E  K  S  H  F  L  T  P  S  G  S  V  H  L  L  S  V  P  S  P   </second_frame>
            <third_frame>   I  V  F  T  N  L  Q  K  Q  K  *  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  H  *  A  I  V  L  Y  C  L  T  S  L  S  R  K  Q  S  T  H  *  A  I  P  P  G  Q  P  R  L  L  T  Q  H  T  S  S  F  I  D  S  G  M  V  Y  N  L  R  T  R  E  C  I  P  K  Q  L  D  E  K  L  Q  I  L  L  L  F  L  E  *  F  C  L  C  F  V  V  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  *  T  K  M  F  R  K  V  P  F  I  *  A  R  H  F  P  K  L  L  C  H  W  L  K  S  H  T  F  *  R  H  R  E  V  C  T  Y  F  L  Y  R  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="114964" PGL_stop="113113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114964" e_stop="114739"/>
            <exon e_start="114568" e_stop="114464"/>
            <exon e_start="113945" e_stop="113850"/>
            <exon e_start="113759" e_stop="113667"/>
            <exon e_start="113444" e_stop="113359"/>
            <exon e_start="113276" e_stop="113113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.969"/>
          <exon-intron don_prob="0.730" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.933" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="114964" e_stop="114739" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="114738" i_stop="114569" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="114568" e_stop="114464" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.730" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114463" i_stop="113946" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="113945" e_stop="113850" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113849" i_stop="113760" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113759" e_stop="113667" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.983">
            <gDNA_intron_boundary i_start="113666" i_stop="113445" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113444" e_stop="113359" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113358" i_stop="113277" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="113276" e_stop="113113" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114964" stop="114739"/>
              <exon start="114568" stop="114464"/>
              <exon start="113945" stop="113850"/>
              <exon start="113759" stop="113667"/>
              <exon start="113444" stop="113359"/>
              <exon start="113276" stop="113113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG : GCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAG : AATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAG : CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAG : GTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCA : CTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAACGAGGTTGTTGTTGGAATCAATACATCATAATATGTCTAACGAGTGCTC</gDNA_template>
            <first_frame> K  M  V  P  W  L  C  I  F  F  S  Y  L  L  F  Y  K  S  S  C  E  L  I  T  S  L  P  G  Q  P  P  N  I  F  F  K  Q  H  S  G  Y  I  V  T  N  S  Q  N  G  R  A  L  F  Y  Y  F  V  E  A  D  S  E  N  A  T  S  L  P  L  T  L  W  L  N  G   : G  P  G  C  S  S  V  G  F  G  V  F  M  E  H  G  P  F  Q  P  G  K  D  G  R  L  I  K  N  K  Y  S  W  N  L   : E  S  N  M  L  Y  V  E  S  P  I  G  V  G  F  S  Y  S  N  T  S  S  D  Y  V  N  W  D  D  V  A  T   : A  K  E  N  L  Q  F  L  L  N  W  L  E  K  F  P  E  Y  R  N  L  D  L  F  L  A  G  E  S  Y  A   : G  H  Y  I  P  Q  L  T  V  L  L  L  D  Y  N  R  K  P  N  V  K  P  I  K  L  K  S  I  A  :  L  G  N  P  L  L  D  L  E  I  S  V  K  S  S  E  Y  L  W  S  H  G  A  I  S  D  E  L  L  T  M  K  R  T  I  C  N  E  T  R  L  L  L  E  S  I  H  H  N  M  S  N  E  C   </first_frame>
            <second_frame>  K  W  F  H  G  C  V  S  F  F  L  T  C  C  S  T  N  Q  V  V  S  L  *  L  L  F  L  D  N  L  Q  I  Y  S  S  N  N  T  L  V  I  L  L  Q  I  L  K  M  V  E  L  S  F  I  I  L  *  K  R  I  Q  K  M  Q  H  H  F  P  L  L  C  G  S  M  E  :  A  L  V  V  H  L  W  G  L  V  F  L  W  N  M  V  L  F  S  Q  E  K  M  G  D  *  *  K  T  S  I  L  G  I  *  :  N  R  T  C  Y  T  L  S  P  R  L  E  *  D  F  H  T  R  I  Q  A  R  T  T  S  I  G  M  M  L  Q  Q  :  Q  R  R  I  S  N  F  Y  S  T  G  *  R  N  S  P  N  I  G  T  W  I  C  S  *  L  V  K  V  M  Q  :  V  T  I  F  H  S  L  Q  Y  C  C  L  I  T  I  E  S  L  M  L  N  Q  S  S  L  N  Q  L  H :   W  G  I  H  Y  *  I  L  K  *  A  L  S  L  P  N  I  Y  G  H  M  V  R  F  L  M  N  Y  L  L  *  K  E  Q  S  V  T  K  R  G  C  C  W  N  Q  Y  I  I  I  C  L  T  S  A  </second_frame>
            <third_frame>   N  G  S  M  V  V  Y  L  F  F  L  L  V  V  L  Q  I  K  L  *  A  Y  N  F  S  S  W  T  T  S  K  Y  I  L  Q  T  T  L  W  L  Y  C  Y  K  F  S  K  W  *  S  S  L  L  L  F  C  R  S  G  F  R  K  C  N  I  T  S  P  Y  S  V  A  Q  W  R :   P  W  L  F  I  C  G  V  W  C  F  Y  G  T  W  S  F  S  A  R  K  R  W  E  T  N  K  K  Q  V  F  L  E  F  R :   I  E  H  V  I  R  *  V  P  D  W  S  R  I  F  I  L  E  Y  K  L  G  L  R  Q  L  G  *  C  C  N  S :   K  G  E  S  P  I  S  T  Q  L  V  R  E  I  P  R  I  *  E  L  G  F  V  L  S  W  *  K  L  C  R :   S  L  Y  S  T  A  Y  S  I  A  A  *  L  Q  *  K  A  *  C  *  T  N  Q  A  *  I  N  C   : T  G  E  S  T  T  R  S  *  N  K  R  *  V  F  R  I  F  M  V  T  W  C  D  F  *  *  I  T  Y  Y  E  K  N  N  L  *  R  N  E  V  V  V  G  I  N  T  S  *  Y  V  *  R  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114964" stop="114739"/>
                    <exon start="114568" stop="114464"/>
                    <exon start="113945" stop="113850"/>
                    <exon start="113759" stop="113667"/>
                    <exon start="113444" stop="113359"/>
                    <exon start="113276" stop="113115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVPWLCIFFSYLLFYKSSCELITSLPGQPPNIFFKQHSGYIVTNSQNGRALFYYFVEADSENATSLPLTLWLNGGPGCSSVGFGVFMEHGPFQPGKDGRLIKNKYSWNLESNMLYVESPIGVGFSYSNTSSDYVNWDDVATAKENLQFLLNWLEKFPEYRNLDLFLAGESYAGHYIPQLTVLLLDYNRKPNVKPIKLKSIALGNPLLDLEISVKSSEYLWSHGAISDELLTMKRTICNETRLLLESIHHNMSNEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="132845" PGL_stop="133515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132845" e_stop="133515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="132845" e_stop="133515" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132845" stop="133515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAGAGTACAACATGCAGCTGTTGTGGCTCCCCACATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGGGCCTATAATAACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTGGAACGATTCGGTGTTGAGTTTGTAAGCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGTATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGATTGGATTCGCCATTTTGTAAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCTACTGCAGCAAAATC</gDNA_template>
            <first_frame> E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  R  V  Q  H  A  A  V  V  A  P  H  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  I  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  *  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  K  M  S  V  T  A  Y  E  A  K  F  R  V  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  D  W  I  R  H  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A  T  A  A  K   </first_frame>
            <second_frame>  R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  T  W  M  P  H  W  K  *  A  R  F  L  G  *  L  Q  G  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  A  *  W  N  D  S  V  L  S  L  *  A  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  P  *  G  I  G  G  G  M  S  S  *  A  *  S  K  A  R  C  R  L  L  L  M  R  L  S  F  V  Y  Y  P  G  M  P  P  S  F  A  S  V  H  K  I  G  F  A  I  L  *  R  D  *  G  Q  T  C  R  F  Q  P  Y  R  *  L  L  Q  Q  N  </second_frame>
            <third_frame>   D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  E  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  V  D  Y  R  A  Y  N  N  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  V  A  T  *  D  G  H  S  G  T  I  R  C  *  V  C  K  L  S  V  S  G  K  C  Q  N  V  V  V  I  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  L  E  G  *  E  E  G  *  V  P  E  P  R  A  R  Q  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  L  D  S  P  F  C  K  G  I  E  V  R  L  A  D  S  S  L  T  G  S  Y  C  S  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132845" stop="133222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMINQVLAYLSGLSDQGQTPPVFSAPAPQVPRVQHAAVVAPHMDASLEIGTFPRLTTGPIITSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133223" stop="133513"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGKMSVTAYEAKFRVLSRYATQLCFSPQDWIRHFVKGLRSDLQIPALQVATAAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="134413" PGL_stop="134088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134413" e_stop="134088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="134413" e_stop="134088" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134413" stop="134088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTGTAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTGCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACTACTAGAAAATAAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCAC</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  Q  R  Y  S  F  S  I  V  I  *  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  C  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  T  R  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I   </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  A  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  L  L  E  N  K  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  </second_frame>
            <third_frame>   D  L  S  Q  A  W  P  T  L  Q  F  *  H  C  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  L  Q  L  S  Q  T  H  L  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Y  *  K  I  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134280" stop="134089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFATITDSPTGVETRIGMSSNSQCKLRLLENKEDTYENVDPGSNNTEAMQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="134110" PGL_stop="134754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134110" e_stop="134455"/>
            <exon e_start="134506" e_stop="134754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="134110" e_stop="134455" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="134456" i_stop="134505" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="134506" e_stop="134754" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134110" stop="134455"/>
              <exon start="134506" stop="134754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGATCCTGGATCCACATTTTCATATGTATCTTCCTTATTTTCTAGTAGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTAGGTGAGTCTGTGATAGTTGCAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTACAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATC : TCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGATTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCGGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGACCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAA</gDNA_template>
            <first_frame> I  *  S  W  I  H  I  F  I  C  I  F  L  I  F  *  *  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  R  *  V  C  D  S  C  K  G  V  *  V  L  S  C  N  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  Q  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y   : L  F  V  L  R  E  W  L  V  K  G  V  *  I  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  R  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  W  S  R  V  L  D  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  </first_frame>
            <second_frame>  F  D  P  G  S  T  F  S  Y  V  S  S  L  F  S  S  S  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  A  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  Y  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  :  S  S  C  *  E  N  G  *  *  R  V  F  R  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  G  C  V  S  C  G  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  T  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K </second_frame>
            <third_frame>   L  I  L  D  P  H  F  H  M  Y  L  P  Y  F  L  V  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  *  V  S  L  *  *  L  Q  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  *  I  T  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S :   L  R  A  K  R  M  V  S  K  G  C  L  D  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134111" stop="134455"/>
                    <exon start="134506" stop="134517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSLFSSSLNLHCELLDMPIRVSTPVGESVIVAKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDYNAKTVTLAKPGTDPLVWEGDYTSTPVRISSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134418" stop="134455"/>
                    <exon start="134506" stop="134752"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRVTTLPLQFVSLRAKRMVSKGCLDFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELREL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="136684" PGL_stop="135647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136684" e_stop="135647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="136684" e_stop="135647" e_length="1038"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136684" stop="136192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136678" stop="136184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136234" stop="135647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTTTGAGATGTAGAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAGTGAGCAGATTTAGTTAATCTGTCAACAATTACCCAAGTAGAATCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTTCTGACAATTCGGGCATTGAGCAACAAAATCCACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAATTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTCCTCTAGTACTTCCAGCCTCTTAAAGTCATTAGCCAGAGCCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCTCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTAAGTAAAGACATACTGTAAACTACGGTGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCTGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCATCTTTAATTG</gDNA_template>
            <first_frame> T  Q  F  S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  S  N  N  F  *  D  V  E  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  V  S  R  F  S  *  S  V  N  N  Y  P  S  R  I  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  F  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  H  N  V  T  L  H  P  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  Y  L  I  S  N  P  D  Q  F  L  I  S  K  L  L  S  F  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  L  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  L  C  L  S  T  *  S  I  F  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  V  I  R  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  R  C  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  Y  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  F  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  V  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  F  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  F  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S  L  A  S  P  H  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  S  S  S  T  S  S  L  L  K  S  L  A  R  A  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  S  A  F  L  L  K  A  S  S  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  I  F  N   </second_frame>
            <third_frame>   P  I  Q  H  A  M  F  S  K  T  *  K  *  T  T  Y  L  Y  L  I  *  W  R  V  E  P  H  A  I  E  Q  F  L  R  C  R  V  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  S  E  Q  I  *  L  I  C  Q  Q  L  P  K  *  N  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  I  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  S  D  N  S  G  I  E  Q  Q  N  P  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  P  H  R  F  L  L  L  *  P  L  L  T  I  P  Y  L  E  S  G  S  V  S  H  Q  *  I  A  F  L  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  P  L  V  L  P  A  S  *  S  H  *  P  E  P  E  P  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  L  S  K  *  R  H  T  V  N  Y  G  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  P  L  P  T  P  N  R  G  S  D  N  Y  V  H  A  S  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136212" stop="135973"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPSSSIFASLASPHNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPSSSTSSLLKSLARA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136487" stop="136251"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHTYPLSLEDQPRSPLQFSPISIQEWAFSEVSLQASGVHTLPSDNSGIEQQNPQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136240" stop="136010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCQNSVNQIIDAGYTYPSLNSQNTFLIDFCFFSLSSQYLISNPDQFLISKLLSFNLVKKGRSCLHTGQKSSLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136510" stop="136286"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNYPSRIILTHCLWKTNHEVHCNSLPFPFRNGHSLKCPSRPLVFILYLLTIRALSNKIHNVTLHPTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="136106" PGL_stop="136852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136106" e_stop="136852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="136106" e_stop="136852" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136106" stop="136852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGAGATAAGGTATTGTGAGGAGAGGCTAAAGAAGCAAAAATCGATGAGGAAGGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATTCACACTATTCTGACAAAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTGGATTTTGTTGCTCAATGCCCGAATTGTCAGAAGGTAAAGTATGAACACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAATGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTTCCAAAGACAATGGGTAAGTATGATTCTACTTGGGTAATTGTTGACAGATTAACTAAATCTGCTCACTTCATTCCGGTCAAGGTGACTTATAATGCAGAGAAGTTAGCCAAACTCTACATCTCAAAAATTGTTCGATTGCATGGGGTTCCACTCTCCATCATATCAGATAGAGGTACGTAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCTGAATTGGGTACTAGGTTGGATCTTAGTACTGCATTTCACCCTCAGACCGATGGTCAGTCTGAGAGAACGATTCAGGTTTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTGGTGATCATTGGGATAACTACTTACCCTTAGCAGATTTCTCATACAACAATAGTTATCACTCA</gDNA_template>
            <first_frame> I  R  D  K  V  L  *  G  E  A  K  E  A  K  I  D  E  E  G  V  L  R  I  K  G  R  V  C  V  P  R  V  D  D  L  I  H  T  I  L  T  K  A  H  S  S  R  Y  S  I  H  P  G  A  T  K  M  Y  R  D  L  K  Q  H  F  W  W  S  R  M  K  R  D  I  V  D  F  V  A  Q  C  P  N  C  Q  K  V  K  Y  E  H  Q  R  P  G  G  T  L  Q  R  M  P  I  P  E  W  K  W  E  R  I  A  M  D  F  V  V  G  L  P  K  T  M  G  K  Y  D  S  T  W  V  I  V  D  R  L  T  K  S  A  H  F  I  P  V  K  V  T  Y  N  A  E  K  L  A  K  L  Y  I  S  K  I  V  R  L  H  G  V  P  L  S  I  I  S  D  R  G  T  *  F  T  S  K  F  W  K  T  L  H  A  E  L  G  T  R  L  D  L  S  T  A  F  H  P  Q  T  D  G  Q  S  E  R  T  I  Q  V  L  E  D  M  L  R  A  C  V  I  E  F  G  D  H  W  D  N  Y  L  P  L  A  D  F  S  Y  N  N  S  Y  H  S </first_frame>
            <second_frame>  F  E  I  R  Y  C  E  E  R  L  K  K  Q  K  S  M  R  K  V  F  *  E  L  R  E  G  Y  V  Y  P  A  S  M  I  *  F  T  L  F  *  Q  R  L  I  V  Q  G  I  L  Y  I  L  V  Q  P  R  C  I  V  T  *  S  N  I  F  G  G  V  G  *  S  V  T  L  W  I  L  L  L  N  A  R  I  V  R  R  *  S  M  N  T  R  G  L  E  G  H  F  R  E  C  P  F  L  N  G  N  G  R  E  L  Q  W  T  S  W  L  V  F  Q  R  Q  W  V  S  M  I  L  L  G  *  L  L  T  D  *  L  N  L  L  T  S  F  R  S  R  *  L  I  M  Q  R  S  *  P  N  S  T  S  Q  K  L  F  D  C  M  G  F  H  S  P  S  Y  Q  I  E  V  R  S  L  L  L  S  F  G  K  H  C  M  L  N  W  V  L  G  W  I  L  V  L  H  F  T  L  R  P  M  V  S  L  R  E  R  F  R  F  W  R  I  C  F  V  H  V  *  *  N  L  V  I  I  G  I  T  T  Y  P  *  Q  I  S  H  T  T  I  V  I  T   </second_frame>
            <third_frame>   S  R  *  G  I  V  R  R  G  *  R  S  K  N  R  *  G  R  C  F  E  N  *  G  K  G  M  C  T  P  R  R  *  F  D  S  H  Y  S  D  K  G  S  *  F  K  V  F  Y  T  S  W  C  N  Q  D  V  S  *  P  K  A  T  F  L  V  E  *  D  E  A  *  H  C  G  F  C  C  S  M  P  E  L  S  E  G  K  V  *  T  P  E  A  W  R  D  T  S  E  N  A  H  S  *  M  E  M  G  E  N  C  N  G  L  R  G  W  S  S  K  D  N  G  *  V  *  F  Y  L  G  N  C  *  Q  I  N  *  I  C  S  L  H  S  G  Q  G  D  L  *  C  R  E  V  S  Q  T  L  H  L  K  N  C  S  I  A  W  G  S  T  L  H  H  I  R  *  R  Y  V  V  Y  F  *  V  L  E  N  I  A  C  *  I  G  Y  *  V  G  S  *  Y  C  I  S  P  S  D  R  W  S  V  *  E  N  D  S  G  F  G  G  Y  A  S  C  M  C  D  R  I  W  *  S  L  G  *  L  L  T  L  S  R  F  L  I  Q  Q  *  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136127" stop="136642"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEAKEAKIDEEGVLRIKGRVCVPRVDDLIHTILTKAHSSRYSIHPGATKMYRDLKQHFWWSRMKRDIVDFVAQCPNCQKVKYEHQRPGGTLQRMPIPEWKWERIAMDFVVGLPKTMGKYDSTWVIVDRLTKSAHFIPVKVTYNAEKLAKLYISKIVRLHGVPLSIISDRGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136643" stop="136852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSKFWKTLHAELGTRLDLSTAFHPQTDGQSERTIQVLEDMLRACVIEFGDHWDNYLPLADFSYNNSYHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="141428" PGL_stop="141156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141428" e_stop="141156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="141428" e_stop="141156" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141428" stop="141156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAATTGTTGAAAGCTGAAATTGTTATGTACACGTACGTGTCCATGGATTTTCTTCTTAACCATACATATATATTGATGTCATTTCACAAAAAATATTCTGTTCAAACTCAGTTTCGACCATAATGATGTTTTGATTGTCAGACGATGTGTTCGATTTGCAGTCTCCTTTTTGTTCACATCATCTTGTAATAATGGTCAAGTGCTGGGAGTTTTCGTGTTCTTTGTACTTGTATGTAGAGGGGTTCCAATGTAGAATATCCATCTCTGCAG</gDNA_template>
            <first_frame> K  E  L  L  K  A  E  I  V  M  Y  T  Y  V  S  M  D  F  L  L  N  H  T  Y  I  L  M  S  F  H  K  K  Y  S  V  Q  T  Q  F  R  P  *  *  C  F  D  C  Q  T  M  C  S  I  C  S  L  L  F  V  H  I  I  L  *  *  W  S  S  A  G  S  F  R  V  L  C  T  C  M  *  R  G  S  N  V  E  Y  P  S  L  Q </first_frame>
            <second_frame>  K  N  C  *  K  L  K  L  L  C  T  R  T  C  P  W  I  F  F  L  T  I  H  I  Y  *  C  H  F  T  K  N  I  L  F  K  L  S  F  D  H  N  D  V  L  I  V  R  R  C  V  R  F  A  V  S  F  L  F  T  S  S  C  N  N  G  Q  V  L  G  V  F  V  F  F  V  L  V  C  R  G  V  P  M  *  N  I  H  L  C   </second_frame>
            <third_frame>   R  I  V  E  S  *  N  C  Y  V  H  V  R  V  H  G  F  S  S  *  P  Y  I  Y  I  D  V  I  S  Q  K  I  F  C  S  N  S  V  S  T  I  M  M  F  *  L  S  D  D  V  F  D  L  Q  S  P  F  C  S  H  H  L  V  I  M  V  K  C  W  E  F  S  C  S  L  Y  L  Y  V  E  G  F  Q  C  R  I  S  I  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="155735" PGL_stop="154845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="155735" e_stop="155365"/>
            <exon e_start="155263" e_stop="154845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.995" e_score="0.997"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="155735" e_stop="155365" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.995">
            <gDNA_intron_boundary i_start="155364" i_stop="155264" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="155263" e_stop="154845" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155735" stop="155365"/>
              <exon start="155263" stop="154845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAACAACATAGATACCTGTATTGAAGAGCCTTTGATAGACCAATTGAAGCAACCAATGAAATTTTTTAATAGAATGGAAATTGGAAAGCTCATTGCATGCAAAAGACAAAAGCCTGATCAACTGTCTAATAACGCTTTGACATCTGCACTCAATGATACTGGAAATGAACCGAGTTACAGCTCCAGCCACCCTGCTTATGCATGCTGTCCAGAGGAGATCCCGTGTCTTGTGACGGGAAACTGTGTTAATTATCCTTTCCTTGGTATGTTGCACCACACAGACACCAGAACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATTTGTTTATGAG : AGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACTTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAGGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGTTAACTTGGTGTTGTTGGAGAACTGTTCTCTCGAGCCTCTTATTCCATTTGGAGAAATGACCAACATCTGCCCCTCTGATCATAATTTGCCAGAGGGAAACCTAACCTCTATTCA</gDNA_template>
            <first_frame> A  T  T  *  I  P  V  L  K  S  L  *  *  T  N  *  S  N  Q  *  N  F  L  I  E  W  K  L  E  S  S  L  H  A  K  D  K  S  L  I  N  C  L  I  T  L  *  H  L  H  S  M  I  L  E  M  N  R  V  T  A  P  A  T  L  L  M  H  A  V  Q  R  R  S  R  V  L  *  R  E  T  V  L  I  I  L  S  L  V  C  C  T  T  Q  T  P  E  Q  I  W  G  L  A  P  N  H  K  *  E  G  H  C  W  N  L  S  L  K  L  Y  L  F  M  R :   G  *  K  L  V  V  I  T  L  *  T  I  R  K  K  I  C  L  V  L  M  Q  *  L  *  I  R  E  L  T  F  G  A  F  L  F  H  L  L  M  F  T  K  I  L  M  Y  P  A  C  F  N  S  P  V  P  F  *  V  T  I  M  I  F  Q  K  A  I  I  S  F  K  F  Q  T  L  C  L  M  E  A  M  I  S  L  Q  M  S  T  Y  I  C  H  L  M  S  Q  T  Y  L  M  L  T  W  C  C  W  R  T  V  L  S  S  L  L  F  H  L  E  K  *  P  T  S  A  P  L  I  I  I  C  Q  R  E  T  *  P  L  F  </first_frame>
            <second_frame>  Q  Q  H  R  Y  L  Y  *  R  A  F  D  R  P  I  E  A  T  N  E  I  F  *  *  N  G  N  W  K  A  H  C  M  Q  K  T  K  A  *  S  T  V  *  *  R  F  D  I  C  T  Q  *  Y  W  K  *  T  E  L  Q  L  Q  P  P  C  L  C  M  L  S  R  G  D  P  V  S  C  D  G  K  L  C  *  L  S  F  P  W  Y  V  A  P  H  R  H  Q  N  R  Y  G  V  L  L  Q  T  T  S  E  K  G  I  A  G  I  *  V  *  S  F  I  C  L  *   : E  V  K  N  W  W  S  L  P  Y  K  P  S  E  R  R  Y  V  W  Y  *  C  N  S  C  E  F  G  N  L  H  L  E  H  F  F  F  I  C  *  C  S  P  K  F  *  C  I  L  L  A  S  T  V  R  F  L  F  K  S  Q  *  *  S  S  R  R  L  S  S  V  S  N  S  K  L  F  A  *  W  K  Q  *  Y  L  F  R  C  Q  L  I  Y  A  I  *  C  H  K  L  I  *  C  *  L  G  V  V  G  E  L  F  S  R  A  S  Y  S  I  W  R  N  D  Q  H  L  P  L  *  S  *  F  A  R  G  K  P  N  L  Y  S </second_frame>
            <third_frame>   N  N  I  D  T  C  I  E  E  P  L  I  D  Q  L  K  Q  P  M  K  F  F  N  R  M  E  I  G  K  L  I  A  C  K  R  Q  K  P  D  Q  L  S  N  N  A  L  T  S  A  L  N  D  T  G  N  E  P  S  Y  S  S  S  H  P  A  Y  A  C  C  P  E  E  I  P  C  L  V  T  G  N  C  V  N  Y  P  F  L  G  M  L  H  H  T  D  T  R  T  D  M  G  S  C  S  K  P  Q  V  R  R  A  L  L  E  F  K  S  E  A  L  F  V  Y  E  :  R  L  K  I  G  G  H  Y  L  I  N  H  Q  K  E  D  M  F  G  T  D  A  I  V  V  N  S  G  T  Y  I  W  S  I  S  F  S  S  A  N  V  H  Q  N  F  D  V  S  C  L  L  Q  Q  S  G  S  F  L  S  H  N  N  D  L  P  E  G  Y  H  Q  F  Q  I  P  N  S  L  P  N  G  S  N  D  I  S  S  D  V  N  L  Y  M  P  S  D  V  T  N  L  F  N  V  N  L  V  L  L  E  N  C  S  L  E  P  L  I  P  F  G  E  M  T  N  I  C  P  S  D  H  N  L  P  E  G  N  L  T  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="155733" stop="155365"/>
                    <exon start="155263" stop="154847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNIDTCIEEPLIDQLKQPMKFFNRMEIGKLIACKRQKPDQLSNNALTSALNDTGNEPSYSSSHPAYACCPEEIPCLVTGNCVNYPFLGMLHHTDTRTDMGSCSKPQVRRALLEFKSEALFVYERLKIGGHYLINHQKEDMFGTDAIVVNSGTYIWSISFSSANVHQNFDVSCLLQQSGSFLSHNNDLPEGYHQFQIPNSLPNGSNDISSDVNLYMPSDVTNLFNVNLVLLENCSLEPLIPFGEMTNICPSDHNLPEGNLTSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="159479" PGL_stop="160238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159479" e_stop="160238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="159479" e_stop="160238" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159479" stop="160174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159666" stop="160238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCATACAAAGTACTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAATCCATGGCTCCTTTGCCGACGCTGAGTAGATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGATTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGACATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTGCATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTCTCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGA</gDNA_template>
            <first_frame> R  I  Q  S  T  E  R  S  P  H  N  F  P  K  A  *  P  C  V  N  K  F  *  A  S  R  V  A  A  T  S  K  S  S  L  V  I  V  *  P  E  C  R  K  T  S  M  P  K  R  T  V  E  S  T  F  R  F  L  T  V  L  A  W  K  C  L  S  Q  P  C  F  *  A  *  T  P  A  S  Q  H  V  S  *  S  I  R  A  I  S  S  M  I  S  K  R  S  E  L  L  V  R  L  W  R  R  P  S  P  *  A  G  L  F  K  S  R  K  V  S  S  I  C  I  R  F  E  *  I  L  T  S  C  L  G  V  R  I  S  T  G  K  L  V  A  R  I  H  G  S  F  A  D  A  E  *  I  L  G  D  G  W  *  Q  *  V  R  V  E  R  *  F  F  R  P  L  E  R  D  L  Y  N  R  I  W  H  E  I  G  L  L  L  V  S  L  L  *  P  K  V  F  E  *  L  D  D  I  S  C  K  L  L  I  G  F  Q  F  S  A  P  R  S  A  Y  C  T  F  P  L  T  R  L  N  Q  Y  Q  P  S  F  S  T  D  L  Y  H  G  T  L  K  P  A  S  L  </first_frame>
            <second_frame>  A  Y  K  V  L  R  D  P  L  I  I  S  P  K  R  N  H  V  *  I  N  F  E  L  V  G  L  Q  P  R  V  S  L  P  L  L  L  C  S  Q  N  A  A  K  L  P  C  L  S  E  L  L  R  V  R  F  D  F  *  L  C  *  P  G  S  A  C  P  N  L  V  S  E  H  E  R  P  Q  A  N  M  L  V  E  A  S  G  R  L  A  A  *  Y  Q  N  A  L  S  C  S  F  G  Y  G  V  G  L  V  R  R  Q  D  F  S  S  L  G  R  F  L  Q  S  A  F  A  S  N  R  Y  *  Q  V  V  W  V  F  E  F  Q  Q  V  S  *  L  L  E  S  M  A  P  L  P  T  L  S  R  F  *  V  T  G  G  D  N  E  S  V  S  S  A  D  F  F  G  L  *  S  E  I  Y  T  I  E  F  G  M  R  L  D  C  F  *  S  A  S  Y  S  L  K  S  L  S  D  *  M  T  Y  H  V  S  C  *  *  V  S  S  F  P  L  L  G  L  H  I  V  L  F  L  L  L  D  L  T  S  T  N  P  A  S  Q  R  I  Y  T  M  A  L  *  S  Q  H  H  * </second_frame>
            <third_frame>   H  T  K  Y  *  E  I  P  S  *  F  P  Q  S  V  T  M  C  E  *  I  L  S  *  *  G  C  S  H  E  *  V  F  P  C  Y  C  V  A  R  M  P  Q  N  F  H  A  *  A  N  C  *  E  Y  V  S  I  S  D  C  V  S  L  E  V  L  V  P  T  L  F  L  S  M  N  A  R  K  P  T  C  *  L  K  H  Q  G  D  *  Q  H  D  I  K  T  L  *  A  A  R  S  A  M  A  *  A  *  S  V  G  R  T  F  Q  V  S  E  G  F  F  N  L  H  S  L  R  I  D  I  N  K  L  F  G  C  S  N  F  N  R  *  V  S  C  *  N  P  W  L  L  C  R  R  *  V  D  F  R  *  R  V  V  T  M  S  P  C  R  A  L  I  F  S  A  F  R  A  R  F  I  Q  *  N  L  A  *  D  W  I  A  F  S  Q  P  L  I  A  *  S  L  *  V  T  R  *  H  I  M  *  V  A  D  R  F  P  V  F  R  S  *  V  C  I  L  Y  F  S  S  Y  S  T  *  P  V  P  T  Q  L  L  N  G  F  I  P  W  H  F  K  A  S  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="160820" PGL_stop="160200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160820" e_stop="160200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="160820" e_stop="160200" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160820" stop="160598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160791" stop="160429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160729" stop="160200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATCCGTGAGCAAAAACGGCTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCG</gDNA_template>
            <first_frame> L  M  N  P  L  M  I  F  I  K  I  I  K  L  R  *  I  H  I  L  S  Y  D  Q  M  V  S  P  K  I  N  N  Q  T  T  K  C  A  N  S  I  F  Y  T  T  L  F  T  N  S  A  P  N  Y  T  *  N  D  S  T  A  *  R  W  L  A  T  P  Y  L  T  V  K  L  S  L  L  P  N  L  A  V  T  C  Q  P  K  R  E  Q  N  I  T  S  N  E  S  T  D  C  *  V  I  V  T  S  T  K  S  D  S  L  Y  T  V  G  M  L  A  L  S  V  R  A  I  R  C  P  L  Y  L  L  T  G  L  I  S  V  S  K  N  G  L  W  Y  C  E  L  Q  S  H  Y  T  V  V  L  L  L  F  M  R  K  R  S  R  F  Q  S  N  V  Q  R  K  L  M  T  N  F  *  P  T  L  R  A  F  Y  R  V  T  P  H  R  S  L  S  V  M  L  A  L  K  C  H  G  I  N  P </first_frame>
            <second_frame>  *  *  I  P  *  *  F  L  S  K  S  L  S  *  G  R  Y  T  S  C  H  M  I  K  W  F  R  Q  K  S  I  I  R  Q  Q  N  V  R  T  R  Y  F  T  R  L  S  L  P  I  L  P  R  I  T  L  K  T  T  Q  Q  L  N  V  G  L  P  R  L  T  *  L  *  N  S  H  S  Y  R  T  W  P  *  P  A  N  Q  S  E  N  K  T  *  H  Q  T  N  R  P  I  V  R  *  S  S  P  P  Q  R  A  T  R  C  I  P  L  A  C  *  L  Y  L  F  G  Q  Y  D  A  H  C  T  C  *  L  V  *  Y  P  *  A  K  T  A  Y  G  I  A  S  F  S  R  T  T  R  S  F  C  Y  S  L  *  E  S  V  P  A  F  R  A  M  F  K  E  S  S  *  P  I  S  S  R  P  C  E  H  S  T  E  *  H  H  T  A  H  C  Q  *  C  W  L  *  S  A  M  V  *  I   </second_frame>
            <third_frame>   D  E  S  P  N  D  F  Y  Q  N  H  *  V  K  V  D  T  H  L  V  I  *  S  N  G  F  A  K  N  Q  *  S  D  N  K  M  C  E  L  D  I  L  H  D  S  L  Y  Q  F  C  P  E  L  H  L  K  R  L  N  S  L  T  L  A  C  H  A  L  L  D  C  K  T  L  T  L  T  E  L  G  R  N  L  P  T  K  A  R  T  K  H  N  I  K  R  I  D  R  L  L  G  N  R  H  L  H  K  E  R  L  A  V  Y  R  W  H  A  S  F  I  C  S  G  N  T  M  P  I  V  L  V  D  W  S  D  I  R  E  Q  K  R  L  M  V  L  R  A  S  V  A  L  H  G  R  S  V  T  L  Y  E  K  A  F  P  L  S  E  Q  C  S  K  K  A  H  D  Q  F  L  A  D  L  A  S  I  L  P  S  N  T  T  P  L  I  V  S  D  A  G  F  K  V  P  W  Y  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160725" stop="160201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNKMCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 132 chains have been computed
$ 
$ memory statistics:
$ 43056 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2152 bytes was the average size of a spliced alignment
$ 22216 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1481 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 168 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:45:51
-->
