<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:33:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298250" ref_strand="+" ref_description="SGN-E298250 [cLEW-18-G6]">
      <seq>aaatggagaaaccaaccctgcaactcttggccagtagctgcaaataatttggggagtaatctccttgtttggtgtgttaattctttagaacacccttgttaattatccattaattttaagaagggggcgtgaccagttgcttacgaagtttgttttagttattgaatgtgctaagtatgaatggaaaccataatcggattattagtggtgtcgtgttggtgcttgggctgttttgattaaagcaaactgcaggaaaattctattttggcattatgtatatgctgaatgtgattatgagtatatactccaacggatgaatacgattaggtaaatgtgttgcgaattataaaacgagttatcgctcggtgtgtcggtgcttcgctgctatagttgcccagacggaactgttttggggagggggctgcctaatgtgatacttcgggttatatgtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="9641" stop="8587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9341" g_stop="8887" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E298250" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9341" e_stop="8887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGAGAAACCAACCCTGCAACTCTTGGCCAGAAGCTGCAAATATTTTTGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCTATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTAGTGAATGTGCTAAGTATAAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATGAAAGCAAACTGCAGGGAAATTTTGTTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATATGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACTGAACTATTTTGGGGACGGGGCTGTTTAATATGATTCTTTGGGTTATATGTGTTA</genome_strand>
        <mrna_strand>AAATGGAGAAACCAACCCTGCAACTCTTGGCCAGTAGCTGCAAATAATTTGGGGAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAACACCCTTGTTAATTATCCATTAATTTTAAGAAGGGGGCGTGACCAGTTGCTTACGAAGTTTGTTTTAGTTATTGAATGTGCTAAGTATGAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAAATTCTATTTTGGCATTATGTATATGCTGAATGTGATTATGAGTATATACTCCAACGGATGAATACGATTAGGTAAATGTGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGGTGCTTCGCTGCTATAGTTGCCCAGACGGAACTGTTTTGGGGAGGGGGCTGCCTAATGTGATACTTCGGGTTATATGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242283" ref_strand="+" ref_description="SGN-E242283 [cLEE-3-G11]">
      <seq>aatatatggaaaacttttaaaacgataaaaagcaactaaatatattaaagagtataataacaaatcaatttatatataatataatataatctagctttgtgaaagtttctctaatttaaaacctactatgagcctaagtgatgatacaatgttttgcccacgctgccaaaacttttctatactttgtcgttatcttgaacatcttatctaagtgaatcgactattctgtgctcaaaacacataaagactcatctaaaaataatgattctttactacacatgatggctacatggtttatggagatttgagtttttcgaactcgcatccccattttggtgctcaatactactctcaaaatatatttatctcatatgtttctaaaaaatataattctttctttggtttgatataataactcaaaacttagcttaaaatttctcttggaatcgatgttgtctttcttgctcaaatgtgaatttttttttgaactctgtgggaatacatagtctcctatatacttattgaagaaaatgaattcaatctttactctttagtcaactcaatgcttaagtattaaaacaaagttaaaaagtttgtaaaaattacttaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="67114" stop="68328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67414" g_stop="68028" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-E242283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67414" e_stop="68028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATGGAAAACTTTTAAAACGATAAAAAGCAACTAAATATATTAAAGAGTATAATAACAAATCAATTTATATATAATATAATATAATCTAGCTTTGTGAAAGTTTCTCTAATTTAAAACCTACTATGAGCCTAAGTGATGATACAATGTTTTGCCCACGCTGCCAAAACTTTTCTATACTTTGTCGTTATCTTGAACATCTTATCTAAGTGAATCGACTATTCTGTGCTCAAAACACATAAAGACTCATCTAAAAATAATGATTCTTTACTACACATGATGGCTACATGGTTTATGGAGATTTGAGTTTTTCGAACTCGCATCCCCATTTTGGTGCTCAATACTACTCTCAAAATATATTTATCTCATATGTTTCTAAAAAATATAATTCTTTCTTTGGTTTGATATAATAACTCAAAACTTAGCTTAAAATTTCTCTTGGAATCGATGTTGTCTTTCTTGCTCAAATGTGAATTTTTTTTTGAACTCTGTGGGAATACATAGTCTCCTATATACTTATTGAAGAAAATGAATTCAATCTTTACTCTTTAGTCAACTCAATGCTTAAGTATTAAAACAAAGTTAAAAAGTTTGTAAAAATTACTTAAAATAT</genome_strand>
        <mrna_strand>AATATATGGAAAACTTTTAAAACGATAAAAAGCAACTAAATATATTAAAGAGTATAATAACAAATCAATTTATATATAATATAATATAATCTAGCTTTGTGAAAGTTTCTCTAATTTAAAACCTACTATGAGCCTAAGTGATGATACAATGTTTTGCCCACGCTGCCAAAACTTTTCTATACTTTGTCGTTATCTTGAACATCTTATCTAAGTGAATCGACTATTCTGTGCTCAAAACACATAAAGACTCATCTAAAAATAATGATTCTTTACTACACATGATGGCTACATGGTTTATGGAGATTTGAGTTTTTCGAACTCGCATCCCCATTTTGGTGCTCAATACTACTCTCAAAATATATTTATCTCATATGTTTCTAAAAAATATAATTCTTTCTTTGGTTTGATATAATAACTCAAAACTTAGCTTAAAATTTCTCTTGGAATCGATGTTGTCTTTCTTGCTCAAATGTGAATTTTTTTTTGAACTCTGTGGGAATACATAGTCTCCTATATACTTATTGAAGAAAATGAATTCAATCTTTACTCTTTAGTCAACTCAATGCTTAAGTATTAAAACAAAGTTAAAAAGTTTGTAAAAATTACTTAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="79016" stop="77826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78716" g_stop="78127" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78716" e_stop="78127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTTTCAGACTTCCTAGTACTTCAAGCTTTATTATTACGGGAGATTTTCTCTAATGTTTCAGCAATCTCAGCATAAGGACATTCCCCATAAGATCCACCTGCTATAGTGTCTAACACCGCTTTATTATTATCATCCTATCCCCGATAGAAGTATTCCTTCAGTGTCTCATCATCTATACGGTGATTTAGAACACTTCTCAAGAATGAGATGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGAGTGCTCAGAAAACATCCCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAATTCCTACTCAGGCCTCCCTACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="84824" stop="83526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84537" g_stop="83826" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84537" e_stop="83826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCATTTCAAAACACTTGAACTCTTGGAATATGGGTACTGGGACTACTTCTCTGAACTTTATGACGAACCTGCAGGACAGACTGTCATAGACACGACGGACCGTCATGAACTCCGTTGCCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCTGCTGCACTATGCTGCCACCTACGGACCGTCACAAGCATGACGAACCGTCATAAGCTCCGTAGGTGGGATCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTTCAAAATAAAGAAAAAATTATATAAAAATTAG--C--AAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATGAACACCCTCAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTCATCCTTTGCAATCATTTGGCTATCAATCCTGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGATTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCGCTAACACCTATCCTCTTCAATTTCTCACTGAGGTTCTAACAATTCCGATATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTGC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="89928" stop="125600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90228" g_stop="90730" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90228" e_stop="90730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAAAAAGTGTGACTTTTCAGCCAATGGCAAAGAAGTTTAGGAAAGTGCCTTGCTCATATAAAAGGAACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAGACAGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATACATTCTCTTGTTCTTAAATTGTAAACCATTCCTGAATCTATAAAGGAACTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAATGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAATTCTGTGAGACAGGTC</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTG-ACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537462" ref_strand="+" ref_description="SGN-E537462 [TUS-56-B5]">
      <seq>ggttccatggttgtgtatctttttttcttacttgttgttctacaaatcaagttgtgagcttataacttctcttcctggacaacctccaaatatattcttcaaacaacactctggttatattgttacaaattctcaaaatggtagagctctcttttattattttgtagaagcggattcagaaaatgcaacatcacttccccttactctgtggctcaatggaggccctggttgttcatctgtggggtttggtgtttttatggaacatggtccttttcagccaggaaaagatgggagactaataaaaaacaagtattcttggaatttagaatcgaacatgttatacgttgagtccccgattggagtaggattttcatactcgaatacaagctcggactacgtcaattgggatgatgttgcaacagcaaaggagaatctccaatttctactcaactggttagagaaattccccgaatataggaacttggatttgttcttagctggtgaaagttatgcaggtcactatattccacagcttacagtattgctgcttgattacaatagaaagcctaatgttaaaccaatcaagcttaaatcaattgcactggggaatccactactagatcttgaaataagcgttaagtcttccgaatatttatggtcacatggtgcgatttctgatgaattacttactatgaaaagaacaatctgtaacgaaaacgagttgttgttgggatcaatacatcataatatgtctaacgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="115259" stop="112813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114959" g_stop="114739" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114738" i_stop="114569" i_length="170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114568" g_stop="114464" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="326" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114463" i_stop="113946" i_length="518">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113945" g_stop="113850" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="422" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113849" i_stop="113760" i_length="90">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113759" g_stop="113667" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="515" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113666" i_stop="113445" i_length="222">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113444" g_stop="113359" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="601" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="113358" i_stop="113277" i_length="82">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113276" g_stop="113113" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="765" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E537462" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114959" e_stop="114739"/>
          <exon e_start="114568" e_stop="114464"/>
          <exon e_start="113945" e_stop="113850"/>
          <exon e_start="113759" e_stop="113667"/>
          <exon e_start="113444" e_stop="113359"/>
          <exon e_start="113276" e_stop="113113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAGGTACATTTCTCCTATATTGCTCAGACTCTTCAAAAATATCGACATGTGTGTGTCAGATCGGACACATATACAATAACATTTTTCGAGAGTCCGAGCTATATAATATTGTATACCGCTTCTCTATTGACCTTTTTTTTTTCATTTGATATTGATTGAATCCATTATGTTAGGCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAGGTAATGTTTCTTTCTTCTTTAGGGTAGAATATTTAGTAGGTAGTTGAGCGTTGTCTCATTTCCTAGCATGATAGATTGGTGTATTGTATCTGTTTCTCGATTCTTTTTTTTTACCAGTAGTAGTAGCGTTTGTCTCATAGTTGGTCTATATTACGAGTTTTGTTACACCTCGTCATTTACTTACTGTGCTTCAGTTATCACATTAGTTGGTTATGTTGCCCCTCTTTGGTATGTTAGGTTATGATTTCCTTATCATATTCTATGTCCTCTTTACTTCTGTATTGTTCTATTAGCTGCTCTGATGTTCGTTATTTGAGCTGAGGGTCTTCCGGAAACAACCTCTCTACCTTCTTGAGGTAGTGGTAAGGTCTACGTACACTCTACCCTTCCCAGACGCCGCTTTTGGGACTATACTGGGATTGTTGTTGTTGTTATCCTGAATGATCATGTTGAAAAGATTTCATTGCCTTGAAAATCGGATAACAATGACTGATTTCGATTGCTATAACACGAAACAGAATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAGGTACACCACTTTTCCAGAAATAGCTAATAATATTTGGTACTAAAAGGCAACGGAAATGTCTGATTTTGCACCTTTTGATCTTTTATATAGCAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAGGTAATATATCTGAACTTTTATGTTGCTGAGACTCTCCAAAAACTTGTCACACCCGTGTCAGATTCCTCCAAAAGTAGTACATAGAGAATCCATTTGGAGGATCCGACACACAATGTTGACATTTTTGAAGAGTACGAACAACAGAAGACTTAACTCGCCTATGTTTTTTGTTCTTTCGGTTGTAAAGATTCGTCAACTGTTCTGTTTTTGTTTTTTTTTTAGGTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCAGTAATGTCTACATTACCCTTAAACTTCTTGTTGATTAATTGTTTTATATTCGAATCTGGGTTATATCCAATGACTTTTGCAGCTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAACGAGGTTGTTGTTGGAATCAATACATCATAATATGTCTAACGAGTGCTC</genome_strand>
        <mrna_strand>GGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG..........................................................................................................................................................................GCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAG..........................................................................................CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAG..............................................................................................................................................................................................................................GTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCA..................................................................................CTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAAACGAGTTGTTGTTGGGATCAATACATCATAATATGTCTAACGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266296" ref_strand="+" ref_description="SGN-E266296 [cLEI-3-D16]">
      <seq>gttccatggttgtgcatctttttttcttactggttgatctacaagtcaagtcgtgagcttataacttctcttcctggacaacctccaaatatattcttcaaacaacactctggttatattgttacaaattctcgcaatggtcgagctctcttttattattttgtagaaccggattcagaaaatgcaacatcacttccccttactctgtggctcaatggaggccctggttgttcatctgtggggttcggtgtttgtatggaacatggtccatttcagccaggaaaagatgggagactaataaaaaacacgtattcttggaatttagaatcgaacatgctatacgttgagtccccgattggagtaggattttcatactcgaatacaagctcggactacgtcaattgcgatgatgttgcaacagcaaaggagaatctccaatttctactcaactggttagagaaattccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="115258" stop="113412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114958" g_stop="114739" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114738" i_stop="114569" i_length="170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114568" g_stop="114464" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="325" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114463" i_stop="113946" i_length="518">
            <donor d_prob="0.730" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113945" g_stop="113850" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="421" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113849" i_stop="113760" i_length="90">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113759" g_stop="113712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="469" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E266296" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114958" e_stop="114739"/>
          <exon e_start="114568" e_stop="114464"/>
          <exon e_start="113945" e_stop="113850"/>
          <exon e_start="113759" e_stop="113712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAGGTACATTTCTCCTATATTGCTCAGACTCTTCAAAAATATCGACATGTGTGTGTCAGATCGGACACATATACAATAACATTTTTCGAGAGTCCGAGCTATATAATATTGTATACCGCTTCTCTATTGACCTTTTTTTTTTCATTTGATATTGATTGAATCCATTATGTTAGGCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAGGTAATGTTTCTTTCTTCTTTAGGGTAGAATATTTAGTAGGTAGTTGAGCGTTGTCTCATTTCCTAGCATGATAGATTGGTGTATTGTATCTGTTTCTCGATTCTTTTTTTTTACCAGTAGTAGTAGCGTTTGTCTCATAGTTGGTCTATATTACGAGTTTTGTTACACCTCGTCATTTACTTACTGTGCTTCAGTTATCACATTAGTTGGTTATGTTGCCCCTCTTTGGTATGTTAGGTTATGATTTCCTTATCATATTCTATGTCCTCTTTACTTCTGTATTGTTCTATTAGCTGCTCTGATGTTCGTTATTTGAGCTGAGGGTCTTCCGGAAACAACCTCTCTACCTTCTTGAGGTAGTGGTAAGGTCTACGTACACTCTACCCTTCCCAGACGCCGCTTTTGGGACTATACTGGGATTGTTGTTGTTGTTATCCTGAATGATCATGTTGAAAAGATTTCATTGCCTTGAAAATCGGATAACAATGACTGATTTCGATTGCTATAACACGAAACAGAATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAGGTACACCACTTTTCCAGAAATAGCTAATAATATTTGGTACTAAAAGGCAACGGAAATGTCTGATTTTGCACCTTTTGATCTTTTATATAGCAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCG</genome_strand>
        <mrna_strand>GTTCCATGGTTGTGCATCTTTTTTTCTTACTGGTTGATCTACAAGTCAAGTCGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCGCAATGGTCGAGCTCTCTTTTATTATTTTGTAGAACCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG..........................................................................................................................................................................GCCCTGGTTGTTCATCTGTGGGGTTCGGTGTTTGTATGGAACATGGTCCATTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACACGTATTCTTGGAATTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAACATGCTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGCGATGATGTTGCAACAG..........................................................................................CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="132546" stop="133801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132846" g_stop="133501" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132846" e_stop="133501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAGAGTACAACATGCAGCTGTTGTGGCTCCCCACATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGGGCCTATAATAACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTGGAACGATTCGGTGTTGAGTTTGTAAGCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGTATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGATTGGATTCGCCATTTTGTAAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="134711" stop="133781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134411" g_stop="134081" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134411" e_stop="134081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTGTAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTGCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACTACTAGAAAATAAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="+" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="133811" stop="135087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134111" g_stop="134455" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134456" i_stop="134505" i_length="50">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134506" g_stop="134754" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="600" r_length="257" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134111" e_stop="134455"/>
          <exon e_start="134506" e_stop="134754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTTATTTTCTAGTAGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTAGGTGAGTCTGTGATAGTTGCAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTACAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTCGTTCTAAGAGAATGGTTCCAGTTCGTATCATCTCCTT---T-C-TTC---GTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGATTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCGGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGACCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAA</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATC..................................................ATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136532" stop="135346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136232" g_stop="135646" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136232" e_stop="135646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAATTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTCCTCTAGTACTTCCAGCCTCTTAAAGTCATTAGCCAGAGCCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCTCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTAAGTAAAGACATACTGTAAACTACGGTGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCTGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCATCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136532" stop="135346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136232" g_stop="135646" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136232" e_stop="135646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAATTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTCCTCTAGTACTTCCAGCCTCTTAAAGTCATTAGCCAGAGCCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCTCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTAAGTAAAGACATACTGTAAACTACGGTGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCTGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCATCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136532" stop="135379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136232" g_stop="135679" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136232" e_stop="135679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAATTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTCCTCTAGTACTTCCAGCCTCTTAAAGTCATTAGCCAGAGCCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCTCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTAAGTAAAGACATACTGTAAACTACGGTGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCTGCCAACTCCAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="136977" stop="135836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136677" g_stop="136136" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136677" e_stop="136136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTTTGAGATGTAGAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAGTGAGCAGATTTAGTTAATCTGTCAACAATTACCCAAGTAGAATCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTTCTGACAATTCGGGCATTGAGCAACAAAATCCACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303598" ref_strand="+" ref_description="SGN-E303598 [cLEY-6-G17]">
      <seq>agaattgttgaaagctgaaattgttatgtacacgtacgtgtccatggattttcttcttaaccatacacatatattgatgtcatttcacaaaaaaatattctgttcaaactcagtttcgaccataatgatgttttgattgtcagatgatgtgttcgatttgcagtctcctttttgttcacatcatcttgtaataatggtcaagtgctgggagttttcgtgttctttgtacttgtatgtagaggggttccaatgtagaatatccatctcggcnganaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="141726" stop="140855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141426" g_stop="141154" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="294"/>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E303598" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141426" e_stop="141154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGTTGAAAGCTGAAATTGTTATGTACACGTACGTGTCCATGGATTTTCTTCTTAACCATACATATATATTGATGTCATTTCAC-AAAAAATATTCTGTTCAAACTCAGTTTCGACCATAATGATGTTTTGATTGTCAGACGATGTGTTCGATTTGCAGTCTCCTTTTTGTTCACATCATCTTGTAATAATGGTCAAGTGCTGGGAGTTTTCGTGTTCTTTGTACTTGTATGTAGAGGGGTTCCAATGTAGAATATCCATCTCTGCAGAC</genome_strand>
        <mrna_strand>AGAATTGTTGAAAGCTGAAATTGTTATGTACACGTACGTGTCCATGGATTTTCTTCTTAACCATACACATATATTGATGTCATTTCACAAAAAAATATTCTGTTCAAACTCAGTTTCGACCATAATGATGTTTTGATTGTCAGATGATGTGTTCGATTTGCAGTCTCCTTTTTGTTCACATCATCTTGTAATAATGGTCAAGTGCTGGGAGTTTTCGTGTTCTTTGTACTTGTATGTAGAGGGGTTCCAATGTAGAATATCCATCTCGGCNGAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310373" ref_strand="+" ref_description="SGN-E310373 [cTOA-10-A2]">
      <seq>aacagatatggggtcttgctccaaaccacaagtgagaagggcattgctggaatttaagtctgaagctttatctgtttatgagaggttaaaaattggtggtcattaccttataaaccatcagaaagaagatatgtttggtactgatgcaatagttgtgaattcgggaacctacatttggagcatttctttttcatctgctaatgttcaccaaaattttgatgtatcctgcttgcttcaacagtccggttcctttttaagtcacaataatgatcttccagaaagctatcatcagtttcaaattccaaactctttgcctaatggaagcaatgatatctcttcagatgtcaacttatatatgccatctgatgtcacaaacttatttaatgttaacttggtgttgttggagaactgttctctctagcctcttattccatttggagaaatgaccaacatctgcccctctgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="155746" stop="154577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155446" g_stop="155365" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155364" i_stop="155264" i_length="101">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155263" g_stop="154877" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="469" r_length="387" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E310373" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155446" e_stop="155365"/>
          <exon e_start="155263" e_stop="154877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATTTGTTTATGAGGTATGCCATTTCATTTCTGTTTGTTCTGATGTCTGGCATATTTATGACATACAATTTAAGTTAAACAACATAAACACAACTTTTGTTCATTGATGTTGCAGAGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACTTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAGGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGTTAACTTGGTGTTGTTGGAGAACTGTTCTCTCGAGCCTCTTATTCCATTTGGAGAAATGACCAACATCTGCCCCTCTGATCAT</genome_strand>
        <mrna_strand>AACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATCTGTTTATGAG.....................................................................................................AGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACCTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAAGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGTTAACTTGGTGTTGTTGGAGAACTGTTCTCTCTAGCCTCTTATTCCATTTGGAGAAATGACCAACATCTGCCCCTCTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328308" ref_strand="+" ref_description="SGN-E328308 [cTOC-21-A7]">
      <seq>aacaacatagatacctgtattgaagagcctttgatagaccaattgaagcaaccaatgaaattttttaatagaatggaaattggaaagctcattgcatgcaaaagacaaaagcctgatcaactgtctaataacgctttgacatctgcactcaatgatactggaaatgaaccgagttacagctccagccaccctgcttatgcatgctgtccagaggagatcccgtgtcttgtgacgggaaactgtgttaattatcctttccttggtatgttgcaccacacagacaccagaacagatatggggtcttgctccaaaccacaagtgagaagggcattgctggaatttaagtctgaagctttatttgtttatgagaggttaaaaattggtggtcattaccttataaaccatcagaaagaagatatgtttggtactgatgcaatagttgtgaattcgggaacttacatttggagcatttctttttcatctgctaatgttcaccaaaattttgatgtatcctgcttgcttcaacagtccggttcctttttaagtcacaataatgatcttccagaaagctatcatcagtttcaaattccaaactncttgcctaatggaagcaatgatatctcttcagatgtcaacttatatatgccatctgatgtcacaaacctatttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0006K08-NduGq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0006K08.1" temp_strand="-" temp_description="C01HBa0006K08.1  AC218053.1 htgs_phase:1 submitted_to_sgn_as:101206 upload_account_name:manual 101206.assem.ace.1 (whole contig)">
        <position start="156033" stop="154660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155733" g_stop="155365" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155364" i_stop="155264" i_length="101">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155263" g_stop="154959" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="674" r_length="305" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0006K08.1" gen_strand="-" ref_id="SGN-E328308" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0006K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155733" e_stop="155365"/>
          <exon e_start="155263" e_stop="154959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACATAGATACCTGTATTGAAGAGCCTTTGATAGACCAATTGAAGCAACCAATGAAATTTTTTAATAGAATGGAAATTGGAAAGCTCATTGCATGCAAAAGACAAAAGCCTGATCAACTGTCTAATAACGCTTTGACATCTGCACTCAATGATACTGGAAATGAACCGAGTTACAGCTCCAGCCACCCTGCTTATGCATGCTGTCCAGAGGAGATCCCGTGTCTTGTGACGGGAAACTGTGTTAATTATCCTTTCCTTGGTATGTTGCACCACACAGACACCAGAACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATTTGTTTATGAGGTATGCCATTTCATTTCTGTTTGTTCTGATGTCTGGCATATTTATGACATACAATTTAAGTTAAACAACATAAACACAACTTTTGTTCATTGATGTTGCAGAGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACTTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAGGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGT</genome_strand>
        <mrna_strand>AACAACATAGATACCTGTATTGAAGAGCCTTTGATAGACCAATTGAAGCAACCAATGAAATTTTTTAATAGAATGGAAATTGGAAAGCTCATTGCATGCAAAAGACAAAAGCCTGATCAACTGTCTAATAACGCTTTGACATCTGCACTCAATGATACTGGAAATGAACCGAGTTACAGCTCCAGCCACCCTGCTTATGCATGCTGTCCAGAGGAGATCCCGTGTCTTGTGACGGGAAACTGTGTTAATTATCCTTTCCTTGGTATGTTGCACCACACAGACACCAGAACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATTTGTTTATGAG.....................................................................................................AGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACTTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAAGCTATCATCAGTTTCAAATTCCAAACTNCTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACCTATTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9341" PGL_stop="8887"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9341" e_stop="8887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="9341" e_stop="8887" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9341" stop="8887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAGAGAAACCAACCCTGCAACTCTTGGCCAGAAGCTGCAAATATTTTTGTTAGTAATCTCCTTGTTTGGTGTGTTAATTCTTTAGAATACCCTTGTTAATTATCTATTAATTTTAAGAAGGGGGCGTGACCAGTAGCTTAGGAAGTTTGTTTTAGTTAGTGAATGTGCTAAGTATAAATGGAAACCATAATCGGATTATTAGTGGTGTCGTGTTGGTGCTTGGGCTGTTTTGATGAAAGCAAACTGCAGGGAAATTTTGTTTTGGCATTATGTATATGTTGAATGTGATTATGAGTATATACTCCAAAGGATGAATACGATAAGGTAGATATGTTGCGAATTATAAAACGAGTTATCGCTCGGTGTGTCGTTGCTTCGCTGCTATGGTTGCCGAGACTGAACTATTTTGGGGACGGGGCTGTTTAATATGATTCTTTGGGTTATATGTGTTA</gDNA_template>
            <first_frame> K  *  R  N  Q  P  C  N  S  W  P  E  A  A  N  I  F  V  S  N  L  L  V  W  C  V  N  S  L  E  Y  P  C  *  L  S  I  N  F  K  K  G  A  *  P  V  A  *  E  V  C  F  S  *  *  M  C  *  V  *  M  E  T  I  I  G  L  L  V  V  S  C  W  C  L  G  C  F  D  E  S  K  L  Q  G  N  F  V  L  A  L  C  I  C  *  M  *  L  *  V  Y  T  P  K  D  E  Y  D  K  V  D  M  L  R  I  I  K  R  V  I  A  R  C  V  V  A  S  L  L  W  L  P  R  L  N  Y  F  G  D  G  A  V  *  Y  D  S  L  G  Y  M  C   </first_frame>
            <second_frame>  N  R  E  T  N  P  A  T  L  G  Q  K  L  Q  I  F  L  L  V  I  S  L  F  G  V  L  I  L  *  N  T  L  V  N  Y  L  L  I  L  R  R  G  R  D  Q  *  L  R  K  F  V  L  V  S  E  C  A  K  Y  K  W  K  P  *  S  D  Y  *  W  C  R  V  G  A  W  A  V  L  M  K  A  N  C  R  E  I  L  F  W  H  Y  V  Y  V  E  C  D  Y  E  Y  I  L  Q  R  M  N  T  I  R  *  I  C  C  E  L  *  N  E  L  S  L  G  V  S  L  L  R  C  Y  G  C  R  D  *  T  I  L  G  T  G  L  F  N  M  I  L  W  V  I  C  V  </second_frame>
            <third_frame>   I  E  K  P  T  L  Q  L  L  A  R  S  C  K  Y  F  C  *  *  S  P  C  L  V  C  *  F  F  R  I  P  L  L  I  I  Y  *  F  *  E  G  G  V  T  S  S  L  G  S  L  F  *  L  V  N  V  L  S  I  N  G  N  H  N  R  I  I  S  G  V  V  L  V  L  G  L  F  *  *  K  Q  T  A  G  K  F  C  F  G  I  M  Y  M  L  N  V  I  M  S  I  Y  S  K  G  *  I  R  *  G  R  Y  V  A  N  Y  K  T  S  Y  R  S  V  C  R  C  F  A  A  M  V  A  E  T  E  L  F  W  G  R  G  C  L  I  *  F  F  G  L  Y  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="67414" PGL_stop="68028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67414" e_stop="68028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67414" e_stop="68028" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67414" stop="68028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATATGGAAAACTTTTAAAACGATAAAAAGCAACTAAATATATTAAAGAGTATAATAACAAATCAATTTATATATAATATAATATAATCTAGCTTTGTGAAAGTTTCTCTAATTTAAAACCTACTATGAGCCTAAGTGATGATACAATGTTTTGCCCACGCTGCCAAAACTTTTCTATACTTTGTCGTTATCTTGAACATCTTATCTAAGTGAATCGACTATTCTGTGCTCAAAACACATAAAGACTCATCTAAAAATAATGATTCTTTACTACACATGATGGCTACATGGTTTATGGAGATTTGAGTTTTTCGAACTCGCATCCCCATTTTGGTGCTCAATACTACTCTCAAAATATATTTATCTCATATGTTTCTAAAAAATATAATTCTTTCTTTGGTTTGATATAATAACTCAAAACTTAGCTTAAAATTTCTCTTGGAATCGATGTTGTCTTTCTTGCTCAAATGTGAATTTTTTTTTGAACTCTGTGGGAATACATAGTCTCCTATATACTTATTGAAGAAAATGAATTCAATCTTTACTCTTTAGTCAACTCAATGCTTAAGTATTAAAACAAAGTTAAAAAGTTTGTAAAAATTACTTAAAATAT</gDNA_template>
            <first_frame> N  I  W  K  T  F  K  T  I  K  S  N  *  I  Y  *  R  V  *  *  Q  I  N  L  Y  I  I  *  Y  N  L  A  L  *  K  F  L  *  F  K  T  Y  Y  E  P  K  *  *  Y  N  V  L  P  T  L  P  K  L  F  Y  T  L  S  L  S  *  T  S  Y  L  S  E  S  T  I  L  C  S  K  H  I  K  T  H  L  K  I  M  I  L  Y  Y  T  *  W  L  H  G  L  W  R  F  E  F  F  E  L  A  S  P  F  W  C  S  I  L  L  S  K  Y  I  Y  L  I  C  F  *  K  I  *  F  F  L  W  F  D  I  I  T  Q  N  L  A  *  N  F  S  W  N  R  C  C  L  S  C  S  N  V  N  F  F  L  N  S  V  G  I  H  S  L  L  Y  T  Y  *  R  K  *  I  Q  S  L  L  F  S  Q  L  N  A  *  V  L  K  Q  S  *  K  V  C  K  N  Y  L  K  Y </first_frame>
            <second_frame>  I  Y  G  K  L  L  K  R  *  K  A  T  K  Y  I  K  E  Y  N  N  K  S  I  Y  I  *  Y  N  I  I  *  L  C  E  S  F  S  N  L  K  P  T  M  S  L  S  D  D  T  M  F  C  P  R  C  Q  N  F  S  I  L  C  R  Y  L  E  H  L  I  *  V  N  R  L  F  C  A  Q  N  T  *  R  L  I  *  K  *  *  F  F  T  T  H  D  G  Y  M  V  Y  G  D  L  S  F  S  N  S  H  P  H  F  G  A  Q  Y  Y  S  Q  N  I  F  I  S  Y  V  S  K  K  Y  N  S  F  F  G  L  I  *  *  L  K  T  *  L  K  I  S  L  G  I  D  V  V  F  L  A  Q  M  *  I  F  F  *  T  L  W  E  Y  I  V  S  Y  I  L  I  E  E  N  E  F  N  L  Y  S  L  V  N  S  M  L  K  Y  *  N  K  V  K  K  F  V  K  I  T  *  N   </second_frame>
            <third_frame>   Y  M  E  N  F  *  N  D  K  K  Q  L  N  I  L  K  S  I  I  T  N  Q  F  I  Y  N  I  I  *  S  S  F  V  K  V  S  L  I  *  N  L  L  *  A  *  V  M  I  Q  C  F  A  H  A  A  K  T  F  L  Y  F  V  V  I  L  N  I  L  S  K  *  I  D  Y  S  V  L  K  T  H  K  D  S  S  K  N  N  D  S  L  L  H  M  M  A  T  W  F  M  E  I  *  V  F  R  T  R  I  P  I  L  V  L  N  T  T  L  K  I  Y  L  S  H  M  F  L  K  N  I  I  L  S  L  V  *  Y  N  N  S  K  L  S  L  K  F  L  L  E  S  M  L  S  F  L  L  K  C  E  F  F  F  E  L  C  G  N  T  *  S  P  I  Y  L  L  K  K  M  N  S  I  F  T  L  *  S  T  Q  C  L  S  I  K  T  K  L  K  S  L  *  K  L  L  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="78716" PGL_stop="78127"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78716" e_stop="78127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="78716" e_stop="78127" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78716" stop="78127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTTTCAGACTTCCTAGTACTTCAAGCTTTATTATTACGGGAGATTTTCTCTAATGTTTCAGCAATCTCAGCATAAGGACATTCCCCATAAGATCCACCTGCTATAGTGTCTAACACCGCTTTATTATTATCATCCTATCCCCGATAGAAGTATTCCTTCAGTGTCTCATCATCTATACGGTGATTTAGAACACTTCTCAAGAATGAGATGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGAGTGCTCAGAAAACATCCCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAATTCCTACTCAGGCCTCCCTACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  L  R  E  I  F  S  N  V  S  A  I  S  A  *  G  H  S  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  Y  P  R  *  K  Y  S  F  S  V  S  S  S  I  R  *  F  R  T  L  L  K  N  E  M  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  S  A  Q  K  T  S  L  N  L  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  S  P  I  T  S  N  S  Y  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  G  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  R  R  C  F  S  L  F  Q  T  S  *  Y  F  K  L  Y  Y  Y  G  R  F  S  L  M  F  Q  Q  S  Q  H  K  D  I  P  H  K  I  H  L  L  *  C  L  T  P  L  Y  Y  Y  H  P  I  P  D  R  S  I  P  S  V  S  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  Y  S  L  C  L  C  G  L  V  S  W  R  P  D  S  R  V  L  R  K  H  P  L  I  C  S  K  *  R  L  S  C  M  G  A  Q  *  T  I  *  Q  P  L  P  S  V  R  E  E  T  L  *  A  L  L  H  L  I  P  T  Q  A  S  L  H  N  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  P  Q  K  V  A  L  K  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  P  C  F  R  L  P  S  T  S  S  F  I  I  T  G  D  F  L  *  C  F  S  N  L  S  I  R  T  F  P  I  R  S  T  C  Y  S  V  *  H  R  F  I  I  I  I  L  S  P  I  E  V  F  L  Q  C  L  I  I  Y  T  V  I  *  N  T  S  Q  E  *  D  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  I  H  S  V  F  V  V  *  F  L  G  D  R  I  V  E  C  S  E  N  I  P  *  F  V  P  S  E  D  *  V  V  W  E  L  S  E  P  Y  S  S  L  S  R  Q  *  E  R  K  H  S  E  P  Y  Y  I  *  F  L  L  R  P  P  Y  T  T  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  R  R  *  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78389" stop="78129"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAQKTSLNLFQVKIELYGSSVNHIAASPVSERGNTLSPITSNSYSGLPTQLLHTALTLAIWACGSSEGSPENKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="84537" PGL_stop="83826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84537" e_stop="83826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="84537" e_stop="83826" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84537" stop="83826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCATTTCAAAACACTTGAACTCTTGGAATATGGGTACTGGGACTACTTCTCTGAACTTTATGACGAACCTGCAGGACAGACTGTCATAGACACGACGGACCGTCATGAACTCCGTTGCCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCTGCTGCACTATGCTGCCACCTACGGACCGTCACAAGCATGACGAACCGTCATAAGCTCCGTAGGTGGGATCTTCTGCATTTCTTTGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTTCAAAATAAAGAAAAAATTATATAAAAATTAGCAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATGAACACCCTCAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTATGACTCAATACAAAATCTTTGTACAATAGTATCCATGTTTCATCCTTTGCAATCATTTGGCTATCAATCCTGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGATTGAATTATGTGGGATCAGAACATGACACAGACTCACCATGCGCTAACACCTATCCTCTTCAATTTCTCACTGAGGTTCTAACAATTCCGATATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTGC</gDNA_template>
            <first_frame> R  G  S  S  F  Q  N  T  *  T  L  G  I  W  V  L  G  L  L  L  *  T  L  *  R  T  C  R  T  D  C  H  R  H  D  G  P  S  *  T  P  L  P  H  T  W  S  D  F  P  I  F  L  Q  L  L  H  Y  A  A  T  Y  G  P  S  Q  A  *  R  T  V  I  S  S  V  G  G  I  F  C  I  S  L  L  K  I  S  A  F  I  F  G  Q  I  S  F  K  I  K  K  K  L  Y  K  N  *  Q  R  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  E  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  I  Q  N  L  C  T  I  V  S  M  F  H  P  L  Q  S  F  G  Y  Q  S  *  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  A  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  I  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  H  F  K  T  L  E  L  L  E  Y  G  Y  W  D  Y  F  S  E  L  Y  D  E  P  A  G  Q  T  V  I  D  T  T  D  R  H  E  L  R  C  P  T  L  G  Q  T  S  P  S  S  F  S  C  C  T  M  L  P  P  T  D  R  H  K  H  D  E  P  S  *  A  P  *  V  G  S  S  A  F  L  C  S  K  S  P  H  S  S  L  D  R  F  P  S  K  *  R  K  N  Y  I  K  I  S  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  M  N  T  L  N  L  N  L  L  F  V  L  K  R  R  T  M  T  Q  Y  K  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  D  *  I  M  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  L  R  F  *  Q  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  C </second_frame>
            <third_frame>   R  V  F  I  S  K  H  L  N  S  W  N  M  G  T  G  T  T  S  L  N  F  M  T  N  L  Q  D  R  L  S  *  T  R  R  T  V  M  N  S  V  A  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  C  C  H  L  R  T  V  T  S  M  T  N  R  H  K  L  R  R  W  D  L  L  H  F  F  A  Q  N  L  R  I  H  L  W  T  D  F  L  Q  N  K  E  K  I  I  *  K  L  A  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  *  T  P  S  T  *  I  C  C  L  S  S  S  D  A  L  *  L  N  T  K  S  L  Y  N  S  I  H  V  S  S  F  A  I  I  W  L  S  I  L  I  N  L  I  K  S  M  H  A  I  T  I  R  I  E  L  C  G  I  R  T  *  H  R  L  T  M  R  *  H  L  S  S  S  I  S  H  *  G  S  N  N  S  D  I  A  T  S  V  L  T  L  K  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84536" stop="84321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLHFKTLELLEYGYWDYFSELYDEPAGQTVIDTTDRHELRCPTLGQTSPSSFSCCTMLPPTDRHKHDEPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84439" stop="84227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRTVMNSVAPHLVRLPHLPSAAALCCHLRTVTSMTNRHKLRRWDLLHFFAQNLRIHLWTDFLQNKEKII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="90228" PGL_stop="90730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90228" e_stop="90730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="90228" e_stop="90730" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90228" stop="90730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAAAAAGTGTGACTTTTCAGCCAATGGCAAAGAAGTTTAGGAAAGTGCCTTGCTCATATAAAAGGAACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACTACAAAGCAAAGACAGAATTATTCCAAGAACAACAGCAATATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATACATTCTCTTGTTCTTAAATTGTAAACCATTCCTGAATCTATAAAGGAACTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAATGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAATTCTGTGAGACAGGTC</gDNA_template>
            <first_frame> A  G  D  G  T  E  S  R  C  T  L  P  D  G  V  K  K  C  D  F  S  A  N  G  K  E  V  *  E  S  A  L  L  I  *  K  E  L  S  *  T  F  L  F  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  L  Q  S  K  D  R  I  I  P  R  T  T  A  I  S  G  A  F  R  L  V  V  *  E  Y  I  L  L  F  L  N  C  K  P  F  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  T  F  A  F  E  D  *  *  K  R  L  K  I  L  *  D  R   </first_frame>
            <second_frame>  L  E  T  V  Q  K  V  G  A  H  F  P  M  A  S  K  S  V  T  F  Q  P  M  A  K  K  F  R  K  V  P  C  S  Y  K  R  N  F  P  K  H  F  C  L  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  Y  K  A  K  T  E  L  F  Q  E  Q  Q  Q  Y  L  E  L  F  V  *  L  F  R  N  T  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  T  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  S  T  *  A  C  *  A  I  E  D  Y  C  L  M  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  L  K  I  S  E  N  D  *  K  F  C  E  T  G  </second_frame>
            <third_frame>   W  R  R  Y  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  L  F  S  Q  W  Q  R  S  L  G  K  C  L  A  H  I  K  G  T  F  L  N  I  F  V  *  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  T  K  Q  R  Q  N  Y  S  K  N  N  S  N  I  W  S  F  S  S  S  C  L  G  I  H  S  L  V  L  K  L  *  T  I  P  E  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  L  L  R  L  V  K  Q  *  R  T  I  A  *  W  *  D  *  *  L  F  L  T  F  G  V  I  V  F  Y  F  C  F  *  R  L  V  K  T  I  E  N  S  V  R  Q  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="114959" PGL_stop="113113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114959" e_stop="114739"/>
            <exon e_start="114568" e_stop="114464"/>
            <exon e_start="113945" e_stop="113850"/>
            <exon e_start="113759" e_stop="113667"/>
            <exon e_start="113444" e_stop="113359"/>
            <exon e_start="113276" e_stop="113113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.730" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114959" e_stop="114739" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="114738" i_stop="114569" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114568" e_stop="114464" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.730" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114463" i_stop="113946" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113945" e_stop="113850" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113849" i_stop="113760" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113759" e_stop="113667" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.983">
            <gDNA_intron_boundary i_start="113666" i_stop="113445" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113444" e_stop="113359" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113358" i_stop="113277" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="113276" e_stop="113113" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114959" stop="114739"/>
              <exon start="114568" stop="114464"/>
              <exon start="113945" stop="113850"/>
              <exon start="113759" stop="113667"/>
              <exon start="113444" stop="113359"/>
              <exon start="113276" stop="113113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114958" stop="114739"/>
              <exon start="114568" stop="114464"/>
              <exon start="113945" stop="113850"/>
              <exon start="113759" stop="113712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG : GCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAG : AATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAG : CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAG : GTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCA : CTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAACGAGGTTGTTGTTGGAATCAATACATCATAATATGTCTAACGAGTGCTC</gDNA_template>
            <first_frame> G  S  M  V  V  Y  L  F  F  L  L  V  V  L  Q  I  K  L  *  A  Y  N  F  S  S  W  T  T  S  K  Y  I  L  Q  T  T  L  W  L  Y  C  Y  K  F  S  K  W  *  S  S  L  L  L  F  C  R  S  G  F  R  K  C  N  I  T  S  P  Y  S  V  A  Q  W  R :   P  W  L  F  I  C  G  V  W  C  F  Y  G  T  W  S  F  S  A  R  K  R  W  E  T  N  K  K  Q  V  F  L  E  F  R :   I  E  H  V  I  R  *  V  P  D  W  S  R  I  F  I  L  E  Y  K  L  G  L  R  Q  L  G  *  C  C  N  S :   K  G  E  S  P  I  S  T  Q  L  V  R  E  I  P  R  I  *  E  L  G  F  V  L  S  W  *  K  L  C  R :   S  L  Y  S  T  A  Y  S  I  A  A  *  L  Q  *  K  A  *  C  *  T  N  Q  A  *  I  N  C   : T  G  E  S  T  T  R  S  *  N  K  R  *  V  F  R  I  F  M  V  T  W  C  D  F  *  *  I  T  Y  Y  E  K  N  N  L  *  R  N  E  V  V  V  G  I  N  T  S  *  Y  V  *  R  V  L </first_frame>
            <second_frame>  V  P  W  L  C  I  F  F  S  Y  L  L  F  Y  K  S  S  C  E  L  I  T  S  L  P  G  Q  P  P  N  I  F  F  K  Q  H  S  G  Y  I  V  T  N  S  Q  N  G  R  A  L  F  Y  Y  F  V  E  A  D  S  E  N  A  T  S  L  P  L  T  L  W  L  N  G   : G  P  G  C  S  S  V  G  F  G  V  F  M  E  H  G  P  F  Q  P  G  K  D  G  R  L  I  K  N  K  Y  S  W  N  L   : E  S  N  M  L  Y  V  E  S  P  I  G  V  G  F  S  Y  S  N  T  S  S  D  Y  V  N  W  D  D  V  A  T   : A  K  E  N  L  Q  F  L  L  N  W  L  E  K  F  P  E  Y  R  N  L  D  L  F  L  A  G  E  S  Y  A   : G  H  Y  I  P  Q  L  T  V  L  L  L  D  Y  N  R  K  P  N  V  K  P  I  K  L  K  S  I  A  :  L  G  N  P  L  L  D  L  E  I  S  V  K  S  S  E  Y  L  W  S  H  G  A  I  S  D  E  L  L  T  M  K  R  T  I  C  N  E  T  R  L  L  L  E  S  I  H  H  N  M  S  N  E  C   </second_frame>
            <third_frame>   F  H  G  C  V  S  F  F  L  T  C  C  S  T  N  Q  V  V  S  L  *  L  L  F  L  D  N  L  Q  I  Y  S  S  N  N  T  L  V  I  L  L  Q  I  L  K  M  V  E  L  S  F  I  I  L  *  K  R  I  Q  K  M  Q  H  H  F  P  L  L  C  G  S  M  E  :  A  L  V  V  H  L  W  G  L  V  F  L  W  N  M  V  L  F  S  Q  E  K  M  G  D  *  *  K  T  S  I  L  G  I  *  :  N  R  T  C  Y  T  L  S  P  R  L  E  *  D  F  H  T  R  I  Q  A  R  T  T  S  I  G  M  M  L  Q  Q  :  Q  R  R  I  S  N  F  Y  S  T  G  *  R  N  S  P  N  I  G  T  W  I  C  S  *  L  V  K  V  M  Q  :  V  T  I  F  H  S  L  Q  Y  C  C  L  I  T  I  E  S  L  M  L  N  Q  S  S  L  N  Q  L  H :   W  G  I  H  Y  *  I  L  K  *  A  L  S  L  P  N  I  Y  G  H  M  V  R  F  L  M  N  Y  L  L  *  K  E  Q  S  V  T  K  R  G  C  C  W  N  Q  Y  I  I  I  C  L  T  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114958" stop="114739"/>
                    <exon start="114568" stop="114464"/>
                    <exon start="113945" stop="113850"/>
                    <exon start="113759" stop="113667"/>
                    <exon start="113444" stop="113359"/>
                    <exon start="113276" stop="113115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPWLCIFFSYLLFYKSSCELITSLPGQPPNIFFKQHSGYIVTNSQNGRALFYYFVEADSENATSLPLTLWLNGGPGCSSVGFGVFMEHGPFQPGKDGRLIKNKYSWNLESNMLYVESPIGVGFSYSNTSSDYVNWDDVATAKENLQFLLNWLEKFPEYRNLDLFLAGESYAGHYIPQLTVLLLDYNRKPNVKPIKLKSIALGNPLLDLEISVKSSEYLWSHGAISDELLTMKRTICNETRLLLESIHHNMSNEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="132846" PGL_stop="133501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132846" e_stop="133501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="132846" e_stop="133501" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132846" stop="133501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGAGAGTACAACATGCAGCTGTTGTGGCTCCCCACATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGGTTGACTACAGGGCCTATAATAACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGTTGCTACATAAGATGGGCATAGTGGAACGATTCGGTGTTGAGTTTGTAAGCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGTGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAGTTCCTGAGCCTAGAGCAAGGCAAGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGTATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGATTGGATTCGCCATTTTGTAAAGGGATTGAGGTCAGACTTGCAGATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  T  W  M  P  H  W  K  *  A  R  F  L  G  *  L  Q  G  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  A  *  W  N  D  S  V  L  S  L  *  A  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  P  *  G  I  G  G  G  M  S  S  *  A  *  S  K  A  R  C  R  L  L  L  M  R  L  S  F  V  Y  Y  P  G  M  P  P  S  F  A  S  V  H  K  I  G  F  A  I  L  *  R  D  *  G  Q  T  C  R  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  E  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  V  D  Y  R  A  Y  N  N  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  V  A  T  *  D  G  H  S  G  T  I  R  C  *  V  C  K  L  S  V  S  G  K  C  Q  N  V  V  V  I  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  L  E  G  *  E  E  G  *  V  P  E  P  R  A  R  Q  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  L  D  S  P  F  C  K  G  I  E  V  R  L  A  D  S  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  R  V  Q  H  A  A  V  V  A  P  H  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  I  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  *  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  K  M  S  V  T  A  Y  E  A  K  F  R  V  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  D  W  I  R  H  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132848" stop="133222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQTPPVFSAPAPQVPRVQHAAVVAPHMDASLEIGTFPRLTTGPIITSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133223" stop="133501"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGKMSVTAYEAKFRVLSRYATQLCFSPQDWIRHFVKGLRSDLQIPALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="134411" PGL_stop="134081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134411" e_stop="134081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="134411" e_stop="134081" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134411" stop="134081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACGTTACAGTTTTAGCATTGTAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTGCAACTATCACAGACTCACCTACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACTACTAGAAAATAAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  C  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  L  Q  L  S  Q  T  H  L  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Y  *  K  I  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  V  I  *  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  C  N  Y  H  R  L  T  Y  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  T  R  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  A  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  L  L  E  N  K  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134280" stop="134083"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFATITDSPTGVETRIGMSSNSQCKLRLLENKEDTYENVDPGSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="134111" PGL_stop="134754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134111" e_stop="134455"/>
            <exon e_start="134506" e_stop="134754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="134111" e_stop="134455" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="134456" i_stop="134505" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="134506" e_stop="134754" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134111" stop="134455"/>
              <exon start="134506" stop="134754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTTATTTTCTAGTAGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTAGGTGAGTCTGTGATAGTTGCAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTACAATGCTAAAACTGTAACGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATC : TCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGATTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCGGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCGACCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAA</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  L  F  S  S  S  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  A  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  Y  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  :  S  S  C  *  E  N  G  *  *  R  V  F  R  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  G  C  V  S  C  G  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  T  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  Y  F  L  V  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  *  V  S  L  *  *  L  Q  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  *  I  T  M  L  K  L  *  R  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S :   L  R  A  K  R  M  V  S  K  G  C  L  D  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L   </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  F  *  *  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  R  *  V  C  D  S  C  K  G  V  *  V  L  S  C  N  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  Q  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y   : L  F  V  L  R  E  W  L  V  K  G  V  *  I  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  R  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  W  S  R  V  L  D  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134111" stop="134455"/>
                    <exon start="134506" stop="134517"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSLFSSSLNLHCELLDMPIRVSTPVGESVIVAKVYRSCLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDYNAKTVTLAKPGTDPLVWEGDYTSTPVRISSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134418" stop="134455"/>
                    <exon start="134506" stop="134752"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRVTTLPLQFVSLRAKRMVSKGCLDFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELREL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="136677" PGL_stop="135646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136677" e_stop="135646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="136677" e_stop="135646" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136677" stop="136136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136232" stop="135646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136232" stop="135646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136232" stop="135679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTACGTACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAATCGAACAATTTTTGAGATGTAGAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAGTGAGCAGATTTAGTTAATCTGTCAACAATTACCCAAGTAGAATCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTTCTGACAATTCGGGCATTGAGCAACAAAATCCACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTTTGTCAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCACAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAATTGCTTTCCTTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTCCTCTAGTACTTCCAGCCTCTTAAAGTCATTAGCCAGAGCCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCTCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTAAGTAAAGACATACTGTAAACTACGGTGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACCGCTGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCATCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  Y  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  F  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  V  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  F  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  F  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S  L  A  S  P  H  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  S  S  S  T  S  S  L  L  K  S  L  A  R  A  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  S  A  F  L  L  K  A  S  S  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  I  F  N  C </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  T  T  Y  L  Y  L  I  *  W  R  V  E  P  H  A  I  E  Q  F  L  R  C  R  V  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  S  E  Q  I  *  L  I  C  Q  Q  L  P  K  *  N  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  I  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  S  D  N  S  G  I  E  Q  Q  N  P  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  P  H  R  F  L  L  L  *  P  L  L  T  I  P  Y  L  E  S  G  S  V  S  H  Q  *  I  A  F  L  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  P  L  V  L  P  A  S  *  S  H  *  P  E  P  E  P  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  S  N  S  N  L  S  K  *  R  H  T  V  N  Y  G  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  P  L  P  T  P  N  R  G  S  D  N  Y  V  H  A  S  L  I   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  P  M  Q  S  N  N  F  *  D  V  E  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  V  S  R  F  S  *  S  V  N  N  Y  P  S  R  I  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  F  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  H  N  V  T  L  H  P  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  Q  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  Y  L  I  S  N  P  D  Q  F  L  I  S  K  L  L  S  F  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  L  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  L  C  L  S  T  *  S  I  F  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  V  I  R  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  R  C  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136212" stop="135973"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPSSSIFASLASPHNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPSSSTSSLLKSLARA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136487" stop="136251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHTYPLSLEDQPRSPLQFSPISIQEWAFSEVSLQASGVHTLPSDNSGIEQQNPQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136240" stop="136010"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCQNSVNQIIDAGYTYPSLNSQNTFLIDFCFFSLSSQYLISNPDQFLISKLLSFNLVKKGRSCLHTGQKSSLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136510" stop="136286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNYPSRIILTHCLWKTNHEVHCNSLPFPFRNGHSLKCPSRPLVFILYLLTIRALSNKIHNVTLHPTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="141426" PGL_stop="141154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141426" e_stop="141154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="141426" e_stop="141154" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141426" stop="141154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTGTTGAAAGCTGAAATTGTTATGTACACGTACGTGTCCATGGATTTTCTTCTTAACCATACATATATATTGATGTCATTTCACAAAAAATATTCTGTTCAAACTCAGTTTCGACCATAATGATGTTTTGATTGTCAGACGATGTGTTCGATTTGCAGTCTCCTTTTTGTTCACATCATCTTGTAATAATGGTCAAGTGCTGGGAGTTTTCGTGTTCTTTGTACTTGTATGTAGAGGGGTTCCAATGTAGAATATCCATCTCTGCAGAC</gDNA_template>
            <first_frame> R  I  V  E  S  *  N  C  Y  V  H  V  R  V  H  G  F  S  S  *  P  Y  I  Y  I  D  V  I  S  Q  K  I  F  C  S  N  S  V  S  T  I  M  M  F  *  L  S  D  D  V  F  D  L  Q  S  P  F  C  S  H  H  L  V  I  M  V  K  C  W  E  F  S  C  S  L  Y  L  Y  V  E  G  F  Q  C  R  I  S  I  S  A  D </first_frame>
            <second_frame>  E  L  L  K  A  E  I  V  M  Y  T  Y  V  S  M  D  F  L  L  N  H  T  Y  I  L  M  S  F  H  K  K  Y  S  V  Q  T  Q  F  R  P  *  *  C  F  D  C  Q  T  M  C  S  I  C  S  L  L  F  V  H  I  I  L  *  *  W  S  S  A  G  S  F  R  V  L  C  T  C  M  *  R  G  S  N  V  E  Y  P  S  L  Q   </second_frame>
            <third_frame>   N  C  *  K  L  K  L  L  C  T  R  T  C  P  W  I  F  F  L  T  I  H  I  Y  *  C  H  F  T  K  N  I  L  F  K  L  S  F  D  H  N  D  V  L  I  V  R  R  C  V  R  F  A  V  S  F  L  F  T  S  S  C  N  N  G  Q  V  L  G  V  F  V  F  F  V  L  V  C  R  G  V  P  M  *  N  I  H  L  C  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0006K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="155733" PGL_stop="154877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="155733" e_stop="155365"/>
            <exon e_start="155263" e_stop="154877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="155733" e_stop="155365" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.995">
            <gDNA_intron_boundary i_start="155364" i_stop="155264" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="155263" e_stop="154877" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155733" stop="155365"/>
              <exon start="155263" stop="154959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155446" stop="155365"/>
              <exon start="155263" stop="154877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAACATAGATACCTGTATTGAAGAGCCTTTGATAGACCAATTGAAGCAACCAATGAAATTTTTTAATAGAATGGAAATTGGAAAGCTCATTGCATGCAAAAGACAAAAGCCTGATCAACTGTCTAATAACGCTTTGACATCTGCACTCAATGATACTGGAAATGAACCGAGTTACAGCTCCAGCCACCCTGCTTATGCATGCTGTCCAGAGGAGATCCCGTGTCTTGTGACGGGAAACTGTGTTAATTATCCTTTCCTTGGTATGTTGCACCACACAGACACCAGAACAGATATGGGGTCTTGCTCCAAACCACAAGTGAGAAGGGCATTGCTGGAATTTAAGTCTGAAGCTTTATTTGTTTATGAG : AGGTTAAAAATTGGTGGTCATTACCTTATAAACCATCAGAAAGAAGATATGTTTGGTACTGATGCAATAGTTGTGAATTCGGGAACTTACATTTGGAGCATTTCTTTTTCATCTGCTAATGTTCACCAAAATTTTGATGTATCCTGCTTGCTTCAACAGTCCGGTTCCTTTTTAAGTCACAATAATGATCTTCCAGAAGGCTATCATCAGTTTCAAATTCCAAACTCTTTGCCTAATGGAAGCAATGATATCTCTTCAGATGTCAACTTATATATGCCATCTGATGTCACAAACTTATTTAATGTTAACTTGGTGTTGTTGGAGAACTGTTCTCTCGAGCCTCTTATTCCATTTGGAGAAATGACCAACATCTGCCCCTCTGATCAT</gDNA_template>
            <first_frame> N  N  I  D  T  C  I  E  E  P  L  I  D  Q  L  K  Q  P  M  K  F  F  N  R  M  E  I  G  K  L  I  A  C  K  R  Q  K  P  D  Q  L  S  N  N  A  L  T  S  A  L  N  D  T  G  N  E  P  S  Y  S  S  S  H  P  A  Y  A  C  C  P  E  E  I  P  C  L  V  T  G  N  C  V  N  Y  P  F  L  G  M  L  H  H  T  D  T  R  T  D  M  G  S  C  S  K  P  Q  V  R  R  A  L  L  E  F  K  S  E  A  L  F  V  Y  E  :  R  L  K  I  G  G  H  Y  L  I  N  H  Q  K  E  D  M  F  G  T  D  A  I  V  V  N  S  G  T  Y  I  W  S  I  S  F  S  S  A  N  V  H  Q  N  F  D  V  S  C  L  L  Q  Q  S  G  S  F  L  S  H  N  N  D  L  P  E  G  Y  H  Q  F  Q  I  P  N  S  L  P  N  G  S  N  D  I  S  S  D  V  N  L  Y  M  P  S  D  V  T  N  L  F  N  V  N  L  V  L  L  E  N  C  S  L  E  P  L  I  P  F  G  E  M  T  N  I  C  P  S  D  H </first_frame>
            <second_frame>  T  T  *  I  P  V  L  K  S  L  *  *  T  N  *  S  N  Q  *  N  F  L  I  E  W  K  L  E  S  S  L  H  A  K  D  K  S  L  I  N  C  L  I  T  L  *  H  L  H  S  M  I  L  E  M  N  R  V  T  A  P  A  T  L  L  M  H  A  V  Q  R  R  S  R  V  L  *  R  E  T  V  L  I  I  L  S  L  V  C  C  T  T  Q  T  P  E  Q  I  W  G  L  A  P  N  H  K  *  E  G  H  C  W  N  L  S  L  K  L  Y  L  F  M  R :   G  *  K  L  V  V  I  T  L  *  T  I  R  K  K  I  C  L  V  L  M  Q  *  L  *  I  R  E  L  T  F  G  A  F  L  F  H  L  L  M  F  T  K  I  L  M  Y  P  A  C  F  N  S  P  V  P  F  *  V  T  I  M  I  F  Q  K  A  I  I  S  F  K  F  Q  T  L  C  L  M  E  A  M  I  S  L  Q  M  S  T  Y  I  C  H  L  M  S  Q  T  Y  L  M  L  T  W  C  C  W  R  T  V  L  S  S  L  L  F  H  L  E  K  *  P  T  S  A  P  L  I   </second_frame>
            <third_frame>   Q  H  R  Y  L  Y  *  R  A  F  D  R  P  I  E  A  T  N  E  I  F  *  *  N  G  N  W  K  A  H  C  M  Q  K  T  K  A  *  S  T  V  *  *  R  F  D  I  C  T  Q  *  Y  W  K  *  T  E  L  Q  L  Q  P  P  C  L  C  M  L  S  R  G  D  P  V  S  C  D  G  K  L  C  *  L  S  F  P  W  Y  V  A  P  H  R  H  Q  N  R  Y  G  V  L  L  Q  T  T  S  E  K  G  I  A  G  I  *  V  *  S  F  I  C  L  *   : E  V  K  N  W  W  S  L  P  Y  K  P  S  E  R  R  Y  V  W  Y  *  C  N  S  C  E  F  G  N  L  H  L  E  H  F  F  F  I  C  *  C  S  P  K  F  *  C  I  L  L  A  S  T  V  R  F  L  F  K  S  Q  *  *  S  S  R  R  L  S  S  V  S  N  S  K  L  F  A  *  W  K  Q  *  Y  L  F  R  C  Q  L  I  Y  A  I  *  C  H  K  L  I  *  C  *  L  G  V  V  G  E  L  F  S  R  A  S  Y  S  I  W  R  N  D  Q  H  L  P  L  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0006K08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="155733" stop="155365"/>
                    <exon start="155263" stop="154877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNIDTCIEEPLIDQLKQPMKFFNRMEIGKLIACKRQKPDQLSNNALTSALNDTGNEPSYSSSHPAYACCPEEIPCLVTGNCVNYPFLGMLHHTDTRTDMGSCSKPQVRRALLEFKSEALFVYERLKIGGHYLINHQKEDMFGTDAIVVNSGTYIWSISFSSANVHQNFDVSCLLQQSGSFLSHNNDLPEGYHQFQIPNSLPNGSNDISSDVNLYMPSDVTNLFNVNLVLLENCSLEPLIPFGEMTNICPSDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 259 chains have been computed
$ 
$ memory statistics:
$ 106792 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 6281 bytes was the average size of a spliced alignment
$ 18688 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1557 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 364 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:38:31
-->
