<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:46:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318360" ref_strand="+" ref_description="SGN-U318360        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | nodulin MtN21 family protein, similar to MtN21 (Medicago truncatula) GI:2598575; contains Pfam profile PF00892: Integral membrane protein | chr3:10444054-10446622 FORWARD | Aliases: MMG15.22(evalue: 1e-111, score=400) genbank/nr: gi|18405635|ref|NP_566831.1| nodulin MtN21 family protein [Arabidopsis thaliana] gi|13937165|gb|AAK50076.1| AT3g28050/MMG15_6 [Arabidopsis thaliana] gi|22137010|gb|AAM91350.1| At3g28050/MMG15_6 [Arabidopsis thaliana](evalue: 1e-109, score=400)">
      <seq>ttcaatgtaggaccttaggaataaaaaaaaagtgtaaaaaatttcatctttaattttccctataaaacttagctaaaaaaacagttgcttcaatttcaatgtaagcttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattctggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5261" stop="974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4961" g_stop="4497" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2500" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="883" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2307" g_stop="2149" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="884" r_stop="1042" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2043" g_stop="1892" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1194" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1809" g_stop="1275" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1195" r_stop="1729" r_length="535" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1730" polyA_stop="1743"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U318360" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1730</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4961" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2500"/>
          <exon e_start="2307" e_stop="2149"/>
          <exon e_start="2043" e_stop="1892"/>
          <exon e_start="1809" e_stop="1275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</genome_strand>
        <mrna_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320762" ref_strand="+" ref_description="SGN-U320762        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT3G01360.2 | Symbol: None | similar to hypothetical protein [Arabidopsis thaliana] (TAIR:At1g55230.1); similar to TMV response-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37906.1); contains InterPro domain Protein of unknown function DUF716 (InterPro:IPR006904) | chr3:137649-138738 REVERSE | Aliases: None (evalue: 7e-62, score=234) genbank/nr: gi|6683539|dbj|BAA89236.1| TMV response-related gene product [Nicotiana tabacum](evalue: 2e-89, score=332)">
      <seq>ggtaagaaggaagggaaaaagaaaggagtatatgagtcttggaaagtcaggtgagcagaaaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatcaaaggagtagaggtaattacacggttaagtgtaaaggtcatcctcagtaccatcgaggtggagctattgctacccttcagttcaattgccaccttgctcttcttgtgactgtgattacttttgtatactcaattgtgtgtaaaaaacatggcattggccgtgaacatatgcggtatagacctattggagctgagatgcaacacttggaaatcgatagtcaagctcattttacattggagtctgatgaagaggatgacaatgagaatgggataaaagaagagatgaatgttgaaatgcaaaaggctattgtacctgttcctgaatcagaaactaatggctatcatacccatccttgaggaaacccatggttcattttttatgttactgggtataaagatatattctttgcagaggggttatggtttagaggttggggttccctttgtataaagaatttacatatagaaaagagaaagtttcagtctttttgtatttgatgattctagttcaaattgtaatgttgtcttagaaattttctttgaagtgatttaagtatattttcctttattgtgtgtctatggaagacttactctttgatagtaatgacgactaactttcttaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8601" stop="10637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8900" g_stop="10339" g_length="1440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1440" r_length="1440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U320762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8900" e_stop="10339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTAATGACGACTAACTTTCTTAACAAAAGG</genome_strand>
        <mrna_strand>GGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTAATGACGACTAACTTTCTTAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329242" ref_strand="-" ref_description="SGN-U329242        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr5:4831751-4834315 REVERSE | Aliases: F2G14.60, F2G14_60(evalue: 2e-84, score=309) genbank/nr: TGF-beta(evalue: 1e-83, score=313)">
      <seq>ccctcgagatagttctctctctctcggttttatacacataacacggatggtgaaattattcatatcaagtccttgggaggtcatatagttaaagctattagagcggctacctcaagattgacctgtggtgagattgcggtaccagataccaacaagtcaaaagttgttgagatcgaacttgaaaatgcaccactctgccaacaagattcaggcagcacggagggtacggataaaaagccggagaatgggatagtagaaattctaaaagtagtactacctctactgccagtatggactatgcttctgatgtttgcagtgatttttcaacaacctgcaacatttttcactaaacaaggtatgacaatgaggagaaacatcggaagcagcttccgaattccaccagctgcacttcagagttcaatcacaatatctataatcctgcttatgcctctttacgacacgtgctttatccccttcattcgtgttttgacacgtaatgagaaaggcatcactgtgatgcagagaatgggaatagggatgtttctttcagtgatagcaatgataattgctgctgttaccgaaagaaaaagactggatattgccagaaatgtaggtactttaacttcagaattcgaagctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagtaaaaaaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="15558" stop="13706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15257" g_stop="15108" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="176" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15107" i_stop="14948" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14947" g_stop="14016" g_length="932"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="1108" r_length="932" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1111" polyA_stop="1134"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U329242" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1082</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15257" e_stop="15108"/>
          <exon e_start="14947" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGAGTAAGTGTTTCTTTAAAGCTTTTGTAAACGAGTTTAAATTCTACGTACTGACAATATAAAATGGTTTCATACAATAGTAAAAAAACTAAAAATGATTACTAACCTGCTACAACATATTGCCAACCAATGCTCATTATGGCTTTGCCTTGCATTTTCTTAGACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</genome_strand>
        <mrna_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA................................................................................................................................................................ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316227" ref_strand="+" ref_description="SGN-U316227        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6, T13O15_6(evalue: 0, score=987) genbank/nr: gi|37962659|gb|AAR05646.1| alpha-DOX1 [Lycopersicon esculentum] (evalue: 0, score=1309)">
      <seq>ttacaagtgatattaatttctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaattgcaaaagttcacaccatagattggactgttcagcttctgaaaaccgatactatgcttgcaggaatgcgtgccaattggtatggattactaggaaagaagttcaaggatacatttggtcatgttggttccattttaagtggtgttgttggaatgaagaaacctgagaatcatggagtgccttattccttaactgaagaatttacgagtgtttatagaatgcatcaactgttacctgatacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcataatcctattccactctattttcgtgttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20091" stop="24298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20391" g_stop="20535" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20679" g_stop="20942" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="409" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21537" g_stop="21686" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="559" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21945" g_stop="22078" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="693" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22188" g_stop="22401" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="907" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22564" g_stop="22709" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="908" r_stop="1053" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22710" i_stop="22795" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22796" g_stop="23020" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1054" r_stop="1278" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="23109" g_stop="23311" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1481" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="23454" g_stop="23697" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1482" r_stop="1725" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="23778" g_stop="23998" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1726" r_stop="1946" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U316227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1946</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20391" e_stop="20535"/>
          <exon e_start="20679" e_stop="20942"/>
          <exon e_start="21537" e_stop="21686"/>
          <exon e_start="21945" e_stop="22078"/>
          <exon e_start="22188" e_stop="22401"/>
          <exon e_start="22564" e_stop="22709"/>
          <exon e_start="22796" e_stop="23020"/>
          <exon e_start="23109" e_stop="23311"/>
          <exon e_start="23454" e_stop="23697"/>
          <exon e_start="23778" e_stop="23998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTAAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTC</genome_strand>
        <mrna_strand>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335547" ref_strand="-" ref_description="SGN-U335547        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6, T13O15_6(evalue: 2e-64, score=243) genbank/nr: gi|37962659|gb|AAR05646.1| alpha-DOX1 [Lycopersicon esculentum] (evalue: 6e-77, score=290)">
      <seq>aaaaaaaaagtgttcctaggtacaatgactttaaaaaaagaaagcttcaaattcctatttcgaaatgggaaaatttgacaaataataaaaaagcaatcaaaacacttggttaagtatatgatgatgatataaaaaagttggatttattagtgggactcatggcggaaaaaaaaattaaaggatttgccatttcaaaaacagccttcaacatattccttttcatggctataaggaggttaaaggcaaataaatttttcccaagcaatttcaacgatgagacatacacaaaaaaaggattagaatgggtgaatactactgaaagtttaaaaaatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttttctgtttgggatttttttccccaacctcataatcctattcccctctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaataccgtaatacgtacaagtttgtatttaaggtgtcttgttttatttcatcaaaataatatattgtatcttggtctgtgaaaataactattagttagtaattcgtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="23167" stop="24454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23466" g_stop="23697" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23778" g_stop="24145" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="600" r_length="368" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="631"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U335547" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335547" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23466" e_stop="23697"/>
          <exon e_start="23778" e_stop="24145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</genome_strand>
        <mrna_strand>AAAAAAAAAGTGTTCCTAGGTACAATGACTTTAAAAAAAGAAAGCTTCAAATTCCTATTTCGAAATGGGAAAATTTGACAAATAATAAAAAAGCAATCAAAACACTTGGTTAAGTATATGATGATGATATAAAAAAGTTGGATTTATTAGTGGGACTCATGGCGGAAAAAAAAATTAAAGGATTTGCCATTTCAAAAACAGCCTTCAACATATTCCTTTTCATGGCTATAAG................................................................................GAGGTTAAAGGCAAATAAATTTTTCCCAAGCAATTTCAACGATGAGACATACACAAAAAAAGGATTAGAATGGGTGAATACTACTGAAAGTTTAAAAAATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTTTCTGTTTGGGATTTTTTTCCCCAACCTCATAATCCTATTCCCCTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTTTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316225" ref_strand="+" ref_description="SGN-U316225        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6, T13O15_6(evalue: 0, score=677) genbank/nr: gi|37962661|gb|AAR05647.1| alpha-DOX2 [Lycopersicon esculentum] (evalue: 0, score=959)">
      <seq>ttatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgatagttcatatcattgataaacataacttgtggcaccgggtaccggtgtttttagggctagtttatcttgcacttcgtcgacatcttaatcaggaatataatttgatcaacgtgggtagaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttggaagatactcaacagattgaggagcttagggcacctgaagaagttgcaagtcaatgtcctctcaagtcctttaagttttacaaatcaaaagaaactcctaccggattttacgaaattaaaaccggtcatttgaataggcgtaccccttggtgggatggaagtgttatttatgggagcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaaagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtgtatctatctatctttatttaatgtttcttgataagataattgtaatctttatattttatgtataatgttcttgtgttactcttcttatttaacgtcaaaaaactttttttttatatcaaaaaaaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="32583" stop="36087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32883" g_stop="32986" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32987" i_stop="33123" i_length="137">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33124" g_stop="33387" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="368" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33480" g_stop="33629" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="518" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33630" i_stop="33696" i_length="67">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33697" g_stop="33833" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="655" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33834" i_stop="33923" i_length="90">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33924" g_stop="34137" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="869" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="1015" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34428" g_stop="34659" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1243" r_length="228" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34736" g_stop="34938" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1244" r_stop="1446" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34939" i_stop="35015" i_length="77">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.014" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35016" g_stop="35252" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1447" r_stop="1683" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="35331" g_stop="35786" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1684" r_stop="2138" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U316225" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2143</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32883" e_stop="32986"/>
          <exon e_start="33124" e_stop="33387"/>
          <exon e_start="33480" e_stop="33629"/>
          <exon e_start="33697" e_stop="33833"/>
          <exon e_start="33924" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34659"/>
          <exon e_start="34736" e_stop="34938"/>
          <exon e_start="35016" e_stop="35252"/>
          <exon e_start="35331" e_stop="35786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAATTCACAATTTAATTAATAATGACAAAGTTTTGTTAATTGTAACCATAAATTTTGAGTACAGATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTGGTAATAAGAATATTTTCCACAAAATATAGTATTATACTAATATGTGTATTTAAACGTTAAGTAATTTGTGTGTGTACAATACATGAAAAGGGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACACGAATCCCAATGGGAGATTTAATCGGAGGC-AAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</genome_strand>
        <mrna_strand>TTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG.........................................................................................................................................ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG...................................................................ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG..........................................................................................GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAATCTATCCC-TTTGACTAACGA............................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATG-TTGACCTTGCAGCACTCGAAA.............................................................................AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAAC-TTTTTTTTTATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316226" ref_strand="+" ref_description="SGN-U316226        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6, T13O15_6(evalue: 6e-141, score=339) genbank/nr: gi|37962661|gb|AAR05647.1| alpha-DOX2 [Lycopersicon esculentum] (evalue: 2e-167, score=415)">
      <seq>ctcattataatgtttgggcaatcctcctccttttgagctaacttttgggttatggttcacttgattgataaattgaacctgtggcaccggctaccagtgttcttggggctactttatctcgcagcacggcgacatcttcatcagcaatataatttgatcaacgtcgatagaacatttactatcgatgttacatcaaatcgggtcgtcgaaaaatacaacgacccctttaatgaaggatgtggcagtgaattacctttctttggtaggaatatgatgcctgttgttcaacatgaaaagttaaagaatccagatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaattcaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactcaacagattgagctaagggcacctgaagaagttgcaagtgagtgtcctctcaagtccttgaagtttttcaagaccaagcaaacacctacgggtttatgtgatatcaagacgggtcacttgaacatacgtactccacagtgggatggaagtgctatttatgggagcagatctgaagtttcaaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatgcttgggctggacttgtaactctgcaagcgctctttgtacaagagcataatcttgtttgtgacaccttgaataaagcatatatcccaaattgctggatgaagaactgtatcagcctgcaaaacgtgtcactgctgctgtaattgctaaaattcacaccatatattggacagttgaacttctcaatacagacacccttctagcaggaatgcgcgccaattggtatggattgttaggaaagaaattcaaggatacattgggtcatgttggaggttccattttaagaggttttgtgggaatgaagaaacccgaggatcatggagtgccttattccttaactgaggaatttacgagtgtctatcgaatgcatcaactcctgcatgatacacttgagctaagaaatatcgatgccacgcctggactaaacaaatctcttcctttgactaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="39088" stop="44597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39388" g_stop="39438" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39439" i_stop="40589" i_length="1151">
            <donor d_prob="0.209" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40835" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="297" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43090" g_stop="43239" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="447" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43340" g_stop="43473" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="581" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43539" g_stop="43752" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="795" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43753" i_stop="43832" i_length="80">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43833" g_stop="43978" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="943" r_length="148" r_score="0.890"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43979" i_stop="44069" i_length="91">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44070" g_stop="44297" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1171" r_length="228" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U316226" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1169</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39388" e_stop="39438"/>
          <exon e_start="40590" e_stop="40835"/>
          <exon e_start="43090" e_stop="43239"/>
          <exon e_start="43340" e_stop="43473"/>
          <exon e_start="43539" e_stop="43752"/>
          <exon e_start="43833" e_stop="43978"/>
          <exon e_start="44070" e_stop="44297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTTGTGAGTTAAGCCTAAGACCTAATTTCACAGAACACTCCTTTTTTTTCGTTTTATCTTTGACTAACTATATTAGAATTGTCAAAGCTATAAAACTTTCTATGATTTTTAAATTTTATAAAACGTGCTAATACATTATTTACGAGTATTATTTTTGTAGGATACTCGTGCCTCTCTACTCCATCTCTATATATAGAAGGATGTGTTCCTCCAAAATCAAGCATTTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACCTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATAGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAG-A-ATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTCAATAATCTCAAATTAACACAAGTTATTTTCATTTTGTCAACTACGTAGTACTGAGCATGACTCAAATGAATTAATTTTATGTTCGCAGGTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</genome_strand>
        <mrna_strand>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG.................................................................GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAT................................................................................AAAGCATATATCCCAAATTGCTGGATGAAGAACTGTATCAGCCTGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATATATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG...........................................................................................GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTGGGTCATGTTGGAGGTTCCATTTTAAGAGGTTTTGTGGGAATGAAGAAACCCGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCATGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335548" ref_strand="+" ref_description="SGN-U335548        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6, T13O15_6(evalue: 3e-82, score=302) genbank/nr: gi|15212228|gb|AAK85133.1| cyclooxygenase-like protein [Capsicum annuum](evalue: 1e-102, score=376)">
      <seq>tgaccctttaaaccgtatatatttatagcttgtagaaaattaaaccctttacatgggttttgttaatctttttctatttcctcttcgttgtttcattcacaaagattttcatgatgctgttgacaaaatgagtcttctcaacaaacttttgtttaggatggttcacttgattgataaattgaacctgtggcaccggctaccactgttcttggggctactttatctcacagcgcggagacatcttcatgagcaatataatttgatcaacgtccgtagaatatttactaccgatgttacatcaaatcgggacgatgaaaaatacaacaacgatccctttaatgaaggaggtggcagtgaattacctttgtttgggaggaatatgatgcctgttgatcaacatgaaaagttaaagaatccacatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaatttaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactctacagattgagctaagggcacctgaagaagttgcaagtgagtgtactctcaaggcctttaagtttttcacgaccaagcaaacacctacgggtttatgtgatatcaagactggtcacttgaacatacgtactccacagggggatggaagtgttatttatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="39372" stop="43791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39660" g_stop="39816" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39817" i_stop="40589" i_length="773">
            <donor d_prob="0.951" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40835" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="406" r_length="249" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43090" g_stop="43239" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="556" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43340" g_stop="43473" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="690" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43539" g_stop="43562" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="714" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U335548" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39660" e_stop="39816"/>
          <exon e_start="40590" e_stop="40835"/>
          <exon e_start="43090" e_stop="43239"/>
          <exon e_start="43340" e_stop="43473"/>
          <exon e_start="43539" e_stop="43562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACCTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAAT---ACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATAGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAG</genome_strand>
        <mrna_strand>TGACCCTTTAAACCGTATATATTTATAGCTTGTAGAAAATTAAACCCTTTACATGGGTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGCTGTTGACAAAATGAGTCTTCTCAACAAACTTTTGTTTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCACTGTTCTTGGGGCTACTTTATCTCACAGCGCGGAGACATCTTCATGAGCAATATAATTTGATCAACGTCCGTAGAATATTTACTACCGATGTTACATCAAATCGGGACGATGAAAAATACAACAACGATCCCTTTAATGAAGGAGGTGGCAGTGAATTACCTTTGTTTGGGAGGAATATGATGCCTGTTGATCAACATGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCACATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTTAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCTACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTACTCTCAAGGCCTTTAAGTTTTTCACGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACTGGTCACTTGAACATACGTACTCCACAGGG.................................................................GGATGGAAGTGTTATTTATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335546" ref_strand="-" ref_description="SGN-U335546        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogen-responsive alpha-dioxygenase, putative, similar to pathogen-inducible alpha-dioxygenase (Nicotiana attenuata) GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase | chr3:159473-162844 REVERSE | Aliases: T13O15.6, T13O15_6(evalue: 5e-100, score=361) genbank/nr: gi|37962661|gb|AAR05647.1| alpha-DOX2 [Lycopersicon esculentum] (evalue: 4e-123, score=444)">
      <seq>gatggaagatctaattgggggtaaaggaaatgagaatctatcaagaattgggtttactaagcaaatggtttcaatgggacatcaagctagtggagctcttgaactttggaattatccgatatggatgagggatcttattgcccaagacgtcgatggaacagacaggccagatcatattgaccttgcagctcttgaaatttatagggacagagaaaggagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgagtgatgatatggaagttattaaaacacttaatgaagtatatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaagggatttgctatctctgagactgcctttttcatatttctaatcatggcatcaagaaggttagaggcagataaattcttcacgagctattacaatgaggagacatatacaaaaaaaggacttgaatgggtgaatacaactgaaagcttaaaagatgtactagatcgacattatccagagatgactgagaaatggatgaactccaacagcgccttttctgtttgggactcgtctccagaacctcacaatccaattccagtctactttcgcgttcctcggacataggctcaattatacttcaaatcaaaataaaaagaagtaatacgtgtgttgattagtttttacctgcaaatgtggaataagattccatgtactatcctcactacctgtttcaaggagtaagcagttttatgaaactattcagagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="44082" stop="45674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44382" g_stop="44578" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44579" i_stop="44666" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44667" g_stop="44910" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="441" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44911" i_stop="45013" i_length="103">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45014" g_stop="45373" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="810" r_length="369" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="827"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U335546" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335546" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44382" e_stop="44578"/>
          <exon e_start="44667" e_stop="44910"/>
          <exon e_start="45014" e_stop="45373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTACAGTTTATTTCTCAGGACTAAAACTACTTCAAAATAAATAAATAAAACAGAGTATATATAATTGATATTGTTGTTTGGATGGCAGTTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAGGTTCGTACTAGAACTGAAAAAAAGAAGCAATTATCATTTATGCATAACAATATTATGCCTTTGTAGATTGACTAATATTGAAAGTTGATTTATAAATTTACAGAAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTC------A----AAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</genome_strand>
        <mrna_strand>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCATATTGACCTTGCAGCTCTTGAAA........................................................................................TTTATAGGGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGATTTGCTATCTCTGAGACTGCCTTTTTCATATTTCTAATCATGGCATCAAG.......................................................................................................AAGGTTAGAGGCAGATAAATTCTTCACGAGCTATTACAATGAGGAGACATATACAAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGGACTCGTCTCCAGAACCTCACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAATTATACTTCAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGGAATAAGATTCCATGTACTATCCTCACTACCTGTTTCAAGGAGTAAGCAGTTTTATGAAACTA-TTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340288" ref_strand="+" ref_description="SGN-U340288        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G28150.1 | Symbol: None | expressed protein | chr3:10473135-10474991 REVERSE | Aliases: MMG15.18 (evalue: 3e-31, score=132) genbank/nr: gi|55296963|dbj|BAD68439.1| leaf senescence protein-like [Oryza sativa (japonica cultivar-group)] (evalue: 3e-32, score=137)">
      <seq>taaccatcacctactctagaaaaattaacccattcttcacttaaagtagaacaagcaccacatttctctctgtttctctcttctccttgttgttaatgtatatcaaatgaagatgaattttcacaattataatctatttaaagaggataagtttcgtagcccaggtttcttattgatctattcactctttctaaccgtgattttcagctgctacatgcttcatttttccttcagcccaaacgttaacttcataaccaaacaagattcagctcctcctactaaatcctcacacgttacaaatcactctcaacctgcagttcacaacaacattacatccgattgtgacttgttgaatggtaattgggttttagaggagaagggtaattattctctgtattatacaaactttagctgtccaacaattccgcattcaaaaaactgtttgttgaacggaagggcagatgaaggatttatgcagtggagatggaaaccagaagaatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="48383" stop="47192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48083" g_stop="47768" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47767" i_stop="47679" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.693" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47678" g_stop="47492" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="504" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U340288" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48083" e_stop="47768"/>
          <exon e_start="47678" e_stop="47492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTG-TGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAGGTAAGTAAGTTTTTTAATCACTTATTGTACGTATTTCTCACTAGTTTTACATTGGATGTCAACCTCGTCTTTGCTCATATTTTTGGCAGTTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</genome_strand>
        <mrna_strand>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG.........................................................................................TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314679" ref_strand="+" ref_description="SGN-U314679        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | cellular repressor of E1A-stimulated genes (CREG) family, contains 1 transmembrane domain; similar to CREG2 (GI:24371079) (Homo sapiens) and (GI:24371081) (Mus musculus); similar to cellular repressor of E1A-stimulated genes CREG (GI:3550343) (Homo sapiens) | chr2:1644494-1646348 FORWARD | Aliases: F28I8.27, F28I8_27(evalue: 2e-64, score=242) genbank/nr: gi|51535816|dbj|BAD37901.1| CREG2-protein-like [Oryza sativa (japonica cultivar-group)] >gi|51535152|dbj|BAD37864.1| CREG2-protein-like [Oryza sativa (japonica cultivar-group)] (evalue: 4e-65, score=251)">
      <seq>aataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatggatagtcacatgaccattgcatgaacgcctttatgtatacaatctgctgacaagttcttttcaagtgaaggttgaaagtggttttggaatgtgaaaaaagggtatcaattttagtgatcaatgaaattcaactgtaaataggagatacttgtgaagctcattatcattcattcacttgtgcatttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68283" stop="72151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68583" g_stop="68812" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="266" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70211" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="468" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71224" g_stop="71302" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="547" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71393" g_stop="71510" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="665" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71511" i_stop="71660" i_length="150">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71661" g_stop="71851" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="856" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U314679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68583" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70211"/>
          <exon e_start="71224" e_stop="71302"/>
          <exon e_start="71393" e_stop="71510"/>
          <exon e_start="71661" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGTCATTCCTTACTTAACACACGATCCATACGCAGGGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</genome_strand>
        <mrna_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT......................................................................................................................................................GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332691" ref_strand="+" ref_description="SGN-U332691        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04581: Protein of unknown function (DUF578) | chr3:139018-143699 FORWARD | Aliases: T13O15.1, T13O15_1(evalue: 2e-76, score=282) genbank/nr: gi|6692258|gb|AAF24608.1| unknown protein [Arabidopsis thaliana](evalue: 1e-74, score=282)">
      <seq>tcttcctcaacaccaatgttgcttcctttctgcaacttccatcccataaacccttctaaaaccctcttaaaaccctcaccatcacattccctcttctctagtacaccctctctttctccaaaacccttctttcctcgtgattcccttcctgttttcgccgcatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagtcttggatttgttgaacaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgcaaactcacccggtcaaattttcgttcctttgcctacccaattacccaagtaccgcgtgggtcacacgcttgacaccagttggagtacgcctgaaaacccagtaccgcagcctggtttagggaaatctatacagaagtttcatgaattgagggatgagttcttgaaggagaaggacaaggagaggttgaagaataaggagtataagaaagagagagcgcctagtttggcggagcttactttgccagctgaggaattgaggaggctgaggacagttgggattgcgctcaggaaaaagttaaagattggaaaggctgggattactgaggggattgtgaatggtattcatgaaagatggaggcgtatcgagcttgttaaaattacgtgcgaggacatatgtaggttgaatatgaagaggactcatgagttgttagagaagaaaactggaggtcttgttatatggagatctggaagtaatataattttgtatagaggagctgattacaagtatccttatttctctgagaatagcttcgagaataacagtgcacaagatgctaaccctgacttgttcatgggtgcggaagagcacatgactaactcatctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="72616" stop="74587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72916" g_stop="73641" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73642" i_stop="74113" i_length="472">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74114" g_stop="74287" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="900" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U332691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72916" e_stop="73641"/>
          <exon e_start="74114" e_stop="74287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAGGTTAATAATACTTACACCCCAATACTCAATTGTCATTGTTTAAAGAAATTGAAACTGCATTCTTGGATTTTCCTGTGTAGATTAATGTAAGAAAACAATATGAAACAGCTTCACTTTGGCAATTTCTTCAGCCCTCTGTGTTGCATATTTAATTAAAGAAAGTGAGTTAATTGCCTTAGAGGACATGGATACCAGAAGAATGTATGCAACTGGTTTACTGATCCTATGGTTGTTTGCCCTGCACTTCTCTATACCACTAATTCTGAGTATATGAATTTACTTTTCCTTTAGATGTCTCAGATATGTTATATTCTATATGACATGAGTTTCCTGATCAAGAATTATAATGGTTTGGTGTTTAACCGTATTGCTTTTTCATAGGTAGAATTCATAGCTCGTAAGTTAGTTTTAATGTGCAGTACACCTCTACCATAATTCTTATCATTACTTTGGCTTATTTAAATATTCACAGAAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</genome_strand>
        <mrna_strand>TCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318183" ref_strand="+" ref_description="SGN-U318183        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04581: Protein of unknown function (DUF578) | chr3:139018-143699 FORWARD | Aliases: T13O15.1, T13O15_1(evalue: 7e-79, score=291) genbank/nr: gi|6692258|gb|AAF24608.1| unknown protein [Arabidopsis thaliana](evalue: 6e-77, score=291)">
      <seq>attggtgaaggtaataacggggaggaaaaacattgaagaggtccaccaaatagctaggatgttagaggcagagagtgggggaatactagttgctgttgagcgagttaataagggttatgcgatcattgtataccgaggaaagaactacgaaaggcctgcttcattgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcatgacaaaacaagtatgtaaacatataaattcaccaaaaatctaatatatgacattgtctttatgacattctttttaatcaacactaggggcccgtttggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="75347" stop="80475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75647" g_stop="75878" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75879" i_stop="77116" i_length="1238">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77117" g_stop="77176" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="292" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77177" i_stop="77278" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77279" g_stop="77404" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="418" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77405" i_stop="78138" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78139" g_stop="78408" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="688" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78506" g_stop="78737" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="920" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1051" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79372" g_stop="80174" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1052" r_stop="1854" r_length="803" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1855" polyA_stop="1871"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U318183" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1854</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75647" e_stop="75878"/>
          <exon e_start="77117" e_stop="77176"/>
          <exon e_start="77279" e_stop="77404"/>
          <exon e_start="78139" e_stop="78408"/>
          <exon e_start="78506" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="80174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTGCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTGACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTAACTACATAACTCAACATAAGGAATAGCTTATGTGCTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGGCCCGTTTGGACATAA</genome_strand>
        <mrna_strand>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGGCCCGTTTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316563" ref_strand="+" ref_description="SGN-U316563        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: AT5G08530.1 | Symbol: None | NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial, putative, similar to NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) from {Homo sapiens} SP:P49821, {Bos taurus} SP:P25708, {Aspergillus niger} SP:Q92406; contains Pfam profile PF01512: Respiratory-chain NADH dehydrogenase 51 Kd subunit | chr5:2759320-2761860 REVERSE | Aliases: MAH20.9, MAH20_9 (evalue: 0, score=870) genbank/nr: gi|639834|emb|CAA58823.1| NADH dehydrogenase [Solanum tuberosum] (evalue: 0, score=931)">
      <seq>tttttcttatttttatgagagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgagtatttcattgaaggagctgctagagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85324" stop="80827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85024" g_stop="84922" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="82358" g_length="1476"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="1576" r_length="1473" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81407" g_stop="81128" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1577" r_stop="1856" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1857" polyA_stop="1874"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U316563" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1859</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85024" e_stop="84922"/>
          <exon e_start="83833" e_stop="82358"/>
          <exon e_start="81407" e_stop="81128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</genome_strand>
        <mrna_strand>TTTTTCTTATTTTTATGAGAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315894" ref_strand="+" ref_description="SGN-U315894        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | ferredoxin thioredoxin reductase catalytic beta chain family protein, contains Pfam profile: PF02943 ferredoxin thioredoxin reductase catalytic beta | chr2:1646805-1648554 FORWARD | Aliases: F28I8.26, F28I8_26(evalue: 7e-61, score=231) genbank/nr: gi|14275859|emb|CAC39620.1| ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum](evalue: 3e-81, score=305)">
      <seq>ccgtttattaatttattttaattataatttttcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88370" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88670" g_stop="88990" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="556" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="617" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94102" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="1015" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1016" polyA_stop="1030"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U315894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1015</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88670" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330786" ref_strand="+" ref_description="SGN-U330786        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgagaatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccaacatgctgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="89839" stop="91165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90139" g_stop="90865" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U330786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90139" e_stop="90865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337236" ref_strand="+" ref_description="SGN-U337236        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | sterile alpha motif (SAM) domain-containing protein, contains Pfam profile PF00536: SAM domain (Sterile alpha motif) | chr1:26430109-26433024 FORWARD | Aliases: None(evalue: 5e-10, score=62.8) genbank/nr: gi|50924880|ref|XP_472785.1| OSJNBa0060P14.15 [Oryza sativa (japonica cultivar-group)] >gi|38347059|emb|CAE04362.2| OSJNBa0060P14.15 [Oryza sativa (japonica cultivar-group)] >gi|38345636|emb|CAE04826.2| OSJNBb0048E02.6 [Oryza sativa (japonica cultivar-group)] (evalue: 4e-16, score=63.9)">
      <seq>cttgctcgctgagttttggagtatagacatatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatgggtcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95697" stop="97493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95997" g_stop="96041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="122" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96442" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="253" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96599" g_stop="96648" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="303" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96769" g_stop="97193" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="728" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U337236" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95997" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96442"/>
          <exon e_start="96599" e_stop="96648"/>
          <exon e_start="96769" e_stop="97193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</genome_strand>
        <mrna_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGGTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320850" ref_strand="+" ref_description="SGN-U320850        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>catatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95724" stop="97438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96024" g_stop="96041" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="95" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96648" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="432" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96769" g_stop="97138" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="802" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U320850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96024" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96648"/>
          <exon e_start="96769" e_stop="97138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</genome_strand>
        <mrna_strand>CATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320849" ref_strand="+" ref_description="SGN-U320849        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | sterile alpha motif (SAM) domain-containing protein, contains Pfam profile PF00536: SAM domain (Sterile alpha motif) | chr1:26430109-26433024 FORWARD | Aliases: None(evalue: 3e-16, score=83.2) genbank/nr: gi|50924880|ref|XP_472785.1| OSJNBa0060P14.15 [Oryza sativa (japonica cultivar-group)] >gi|38347059|emb|CAE04362.2| OSJNBa0060P14.15 [Oryza sativa (japonica cultivar-group)] >gi|38345636|emb|CAE04826.2| OSJNBb0048E02.6 [Oryza sativa (japonica cultivar-group)] (evalue: 6e-31, score=138)">
      <seq>ataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcatatagagaagattatatgattccgaattgttatgtcattctaaaaaaaaaaaaaaaaaaaaaaactcgagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95834" stop="100260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96034" g_stop="96041" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="85" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96442" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="216" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96599" g_stop="96648" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="266" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96769" g_stop="97271" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="769" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98095" g_stop="98175" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="850" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99312" g_stop="99374" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="913" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99615" g_stop="99959" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="914" r_stop="1258" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1259" polyA_stop="1279"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U320849" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1258</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96034" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96442"/>
          <exon e_start="96599" e_stop="96648"/>
          <exon e_start="96769" e_stop="97271"/>
          <exon e_start="98095" e_stop="98175"/>
          <exon e_start="99312" e_stop="99374"/>
          <exon e_start="99615" e_stop="99959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</genome_strand>
        <mrna_strand>ATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329633" ref_strand="+" ref_description="SGN-U329633        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G40140.1 | Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr5:16074575-16076227 FORWARD | Aliases: MSN9.4, MSN9_4 (evalue: 5e-64, score=226) genbank/nr: gi|15242579|ref|NP_198830.1| armadillo repeat containing protein [Arabidopsis thaliana](evalue: 4e-62, score=226)">
      <seq>gaagatgtacacttttgctcatctcctcaacaggctcaaagttgaatttttgaaaccttttgttttcattcatatttgaacctcaaagattgaatcttgaaacttctttttttttttcttcattgaaatgggtactagcaagcaaagatggagaatttcatttcacaagtctccatcaaaacaacctcctattcctatagaatttgtctgtcctatttctggttctctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtgaaattgaagagttcccaaatatctgaacaagaagaagctgtcatctcgtttcgaaaattgacccgaacccgtgaagaaacccggttccagttatgcactccgcgtatactttcagctctacgtgtactcatcacttcaaggtatgtttctgtacaagtaaattcagtagcggcattggtaaatttgtcgttagagaatcgaaacaaggtgaaaatttttacggtctggaattgttccgtcctttattgacgtgttgaaaagtggattccaagaatcacaggaacatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="105701" stop="107267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106001" g_stop="106967" g_length="967"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="968" r_length="968" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U329633" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106001" e_stop="106967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAA-TTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</genome_strand>
        <mrna_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTTACGGTCTGGAATTGTTCCGTCCTTTATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329565" ref_strand="+" ref_description="SGN-U329565        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G40140.1 | Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr5:16074575-16076227 FORWARD | Aliases: MSN9.4, MSN9_4 (evalue: 3e-61, score=232) genbank/nr: gi|10177501|dbj|BAB10895.1| gene_id:MSN9.4~pir||T07721~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 2e-59, score=232)">
      <seq>cttttcagtttagcgttagatgatcagaacaaaactgcaattggggtattaggagctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaggagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgattttggttttggttttgctcgtcgtgtcttctgaggtcatgtgacagttgacatggtaaataatgttggaggtgtaaagaaagattctgaacagtgtgttttagtttttggagaaaagaggctgtctttaacatgaactcattgtctcctaatactcttcaagcaatgcgattttcactttcttgtgtgcctgaggcttattctatgcactgttcgtggcttccacaagccgctgtctagtaatttggtatttatgctggagttgattgattgctgcaactgcggaagttgttagagaattgttattctcatgtttctttaaggtctgcattgcaataaacattgctgcagagcaaatgcaatgaactccagagttgtttttcatttttgagcatcttgatgctcaaacagtgaaagcaagaatgaagagagtgtaccattgacacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="106674" stop="108431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106974" g_stop="108131" g_length="1158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1158" r_length="1158" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-U329565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106974" e_stop="108131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTGTCTCCTAATACTCTTCAAGCAATGCTATTTTCACTTTCTTGTGTGCCTGAGGCTTATTCTATGCACTGTTCGTGGCTTCCACAAGCCGCTGTCTAGTAATTTGGTATTTATGCTGGAGTTGATTGATTGCTGCAACTGCGGAAGTTGTTAGAGAATTGTTATTCTCATGTTTCTTTAAGGTCTGCATTGCAATAAACATTGCTGCAGAGCAAATGCAATGAACTCCAGAGTTGTTTTTCATTTTTGAGCATCTTGATGCTCAAACAGTGAAAGCAAGAATGAAGAGAGTGTACCATTGACACAATCT</genome_strand>
        <mrna_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTGTCTCCTAATACTCTTCAAGCAATGCGATTTTCACTTTCTTGTGTGCCTGAGGCTTATTCTATGCACTGTTCGTGGCTTCCACAAGCCGCTGTCTAGTAATTTGGTATTTATGCTGGAGTTGATTGATTGCTGCAACTGCGGAAGTTGTTAGAGAATTGTTATTCTCATGTTTCTTTAAGGTCTGCATTGCAATAAACATTGCTGCAGAGCAAATGCAATGAACTCCAGAGTTGTTTTTCATTTTTGAGCATCTTGATGCTCAAACAGTGAAAGCAAGAATGAAGAGAGTGTACCATTGACACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318518" ref_strand="+" ref_description="SGN-U318518        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: AT5G40150.1 | Symbol: None | peroxidase, putative, identical to peroxidase ATP26a {Arabidopsis thaliana} GP:1890317:emb:CAA72487 | chr5:16076737-16078271 REVERSE | Aliases: MSN9.50, MSN9_50 (evalue: 5e-120, score=428) genbank/nr: gi|15242580|ref|NP_198831.1| peroxidase, putative [Arabidopsis thaliana] gi|26397798|sp|Q9FL16|PE63_ARATH Peroxidase 63 precursor (Atperox P63) (ATP26a) gi|10177502|dbj|BAB10896.1| peroxidase ATP26a homolog [Arabidopsis thaliana] gi|26452285|dbj|BAC43229.1| putative peroxidase ATP26a [Arabidopsis thaliana](evalue: 4e-118, score=428)">
      <seq>ttaaataaaaaataaaaacatatatcattgaatgaagagaagtgagaaatatgaagaccccattgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110807" stop="108776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110507" g_stop="109084" g_length="1424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1424" r_length="1424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1432" polyA_stop="1442"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U318518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1424</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110507" e_stop="109084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343091" ref_strand="+" ref_description="SGN-U343091        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylinositolglycan class N (PIG-N) family protein, similar to phosphatidylinositolglycan class N short form GB:BAA82620 (gi:5631308) (Mus musculus) | chr3:144295-149835 REVERSE | Aliases: T13O15.2, T13O15_2(evalue: 2e-36, score=149) genbank/nr: gi|15232100|ref|NP_186787.1| phosphatidylinositolglycan family [Arabidopsis thaliana] gi|6692267|gb|AAF24617.1| putative phosphatidylinositolglycan class N short form [Arabidopsis thaliana](evalue: 2e-34, score=149)">
      <seq>tttggctttcaactattcatagaacagagaagcaggaattattagtcctccaccaactgttgaattggtccatagctggcttctcgatgatacctcccacctcttttcagctactggtctcttatccaggctgacttccacttttccttggcgttgcacctcccttcctgcttctatcaatcggttatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaagttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacttttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcctccgtgtatcgattcattacaattttcagtccttttctgatggcggcattacttattttcaagctgttgataccattcatacttgtcatatgtgcgttcagtgcaatcacaaaattggtgcaagttccattgttgggatgctattttctggntgatcttgtgctctgatgtaatgacaatccatttcttcttcctggtccgaaataaaggaagctggatggaaattggcaacagcattagccatttcggaattatgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="122234" stop="118425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121934" g_stop="121857" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121856" i_stop="120847" i_length="1010">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120846" g_stop="120744" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="184" r_length="106" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120743" i_stop="120653" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120652" g_stop="120484" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="353" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120483" i_stop="120303" i_length="181">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120302" g_stop="120204" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="452" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120203" i_stop="120106" i_length="98">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120105" g_stop="120047" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="511" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120046" i_stop="119138" i_length="909">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119137" g_stop="119032" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="618" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119031" i_stop="118792" i_length="240">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118791" g_stop="118725" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="685" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U343091" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121934" e_stop="121857"/>
          <exon e_start="120846" e_stop="120744"/>
          <exon e_start="120652" e_stop="120484"/>
          <exon e_start="120302" e_stop="120204"/>
          <exon e_start="120105" e_stop="120047"/>
          <exon e_start="119137" e_stop="119032"/>
          <exon e_start="118791" e_stop="118725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATA-CTCCCA-CTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCA-TTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGTGTAAGTGGAACTGAACATCCTTGTTTATGAATCCTTTGTTTCTTATTTTGCCTTTCATTTGCATATGGTGACAGATGCGATTGTTCCTTTTTTTGCAGCCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCATGTAAGTACAACTTGCAAATTTTCCTTCTTAACAGTTCGAATGGAAAACTACTGTAATTCAATGATTGTGGTGGAAATCTTTTCTTGGAGTTTCTAGGGCTTGGAGGTTGTTTTTCTCCCTCAAATTCATCCAAATTAGATGTGACAATTACCGACCACTCTTACATATCTAAAATATTGGTTTGAGGGATTGCCTGTTGCAGCGCTCAACTTTCACCTGTTGAGACACTCCTCGCTGCCTGGAGCAACTAGAAGATATTGTTAAAGCGTTGCAGCGCCCAAATTTCGACCGGTGCTACGGTGGCTGCTGTTTTCCACGAATATATCTAAATTATTTCCAACTCCAAATTGTTCTCCACTTGCTTCAATCCACTCCTCCTCATTTCCAAACATCCATATTACTTTCCAAATACAACTTTTGAGTGCTGAACACTCTTGTGGCAACTTAACCGCGTTATTAGTTGTGTTAGCCATAACTAGAGTGTAGAAATCTTCAGGGTATTTTACCATCTTTCTGTGTTGGGTGGTTGGGTTCTTCTTGGTATTACCTTGCAGCCTTTACATGTAGGCTGTAGCCCTGCAATTTCTTCTAGTGTGGGTGAAGTTCATTTGGTCATGATTACTCCTCTCTTAAAAGTTATTCAGTGCATTCCCTGTTTTAAAGTAATTGTTGGCTAATTCAAACTTTTAAGATAACAAAGTGCAGAGCACAAGAACTACCTGATCTTCACTGAGAACAAACTGCAGTATAGGAACCTATATTTATACGTCAAGAAGCCTTTAGAATTTTTGGAGACCAAGAAAATTTGTATTTGATATGCAAGTAGAAATATTTTGGAATTCTTGGTCTTGCTGAGATCAGTTGTGTACCATGGATGACTTTTATTTTTTTGTTGTGCATTAACTGCAGATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGG-TGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTGGTAAGACACTATTATTCCTCCTATGGTGCAATTCTCATATGTTTCTCCACCTACTTTCCATCCAATGTGTCTTGTTTGAAAAACTTAGGATTCCAGTATCAATATGCTCTTCTCTGTCATAATCTTCAACAGCTTTGAATTTTTCTGTTTCATGCTTCCGACTGTTTTATCTCCAGAAACATGATTCAGGGGGTTCATCATGGTTAGGATTCATCTTACTTGTTTTCTGATTGGTAATAGGTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</genome_strand>
        <mrna_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACCTCCCACCTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCACTTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT..................................................................................................CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGNTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG................................................................................................................................................................................................................................................GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343720" ref_strand="+" ref_description="SGN-U343720        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylinositolglycan class N (PIG-N) family protein, similar to phosphatidylinositolglycan class N short form GB:BAA82620 (gi:5631308) (Mus musculus) | chr3:144295-149835 REVERSE | Aliases: T13O15.2, T13O15_2(evalue: 1e-73, score=273) genbank/nr: gi|15232100|ref|NP_186787.1| phosphatidylinositolglycan family [Arabidopsis thaliana] gi|6692267|gb|AAF24617.1| putative phosphatidylinositolglycan class N short form [Arabidopsis thaliana](evalue: 1e-71, score=273)">
      <seq>tcaagctgacatagcaccactgatgtccactcttcttggtctgccatgtcctgtcaactcggttggcaatctgcctcttcagtacatgaatctgaacaaggcagaagaagttgaagctgtgctggccaatacgaagcaaatcctcaatcagttccttcgaaagtcacagttaaagcaatcgacctcattatacatcaagcctttcaagcccttggctagttattcatcactattgcgtgaaattgagcaactgatttctctcaaagagtatgaaactgcaatgaaattatctgaacagcttaggagcttggcacttcaaggacttcactatttccagacatatgattggctgatgctgatgactgtaatcactcttggctatgttggttggatgatctatgtgatactccatgtcttgcaatcttatacatccctacctgcaaatatttttagcaaggagcaagtgcctagtccaagaagtacagctaagatacatcttttaggagggttgttgatgggagtagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="125541" stop="122472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125241" g_stop="125217" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125216" i_stop="125113" i_length="104">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125112" g_stop="125038" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125037" i_stop="124887" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124820" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124819" i_stop="124439" i_length="381">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124438" g_stop="124116" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="490" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124115" i_stop="122808" i_length="1308">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122807" g_stop="122772" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="526" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U343720" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125241" e_stop="125217"/>
          <exon e_start="125112" e_stop="125038"/>
          <exon e_start="124886" e_stop="124820"/>
          <exon e_start="124438" e_stop="124116"/>
          <exon e_start="122807" e_stop="122772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGACATAGCACCACTGATGGTCGATTACCTTGTCCTCTTCTGACAGTCCTATCTTTGAAGTGTCTTTCTATCATATCAACTTCGTCTAAAGTCTGACTCTGATATGATCTCTAAAAATTGCAGTCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAGGTAGCTGCATTACTATAAGTTCTCTGTCTATTTTGCACTGTACGACTGTGTGATGGATTGGGAGAGATATACTGGTTTGCTGGTTCTTTGGGGCTATTTTGTTCTTTGTATTGAGATAGAATGCAGGTCTTAAAATCACTTTTATGTCCAGGCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCACGTATCCTTCCCTATAACTTAGATTGTTTTTCACTTCTAATTTCATTCTGCCTCACTCATCTTACATGTTATTTCCTAATTTTCTTTTTGTTGCAATTCACAACTTTCAGAGTTTTAAATGTCAGTTAAGATAGAACCTTATTAAAAGAAAATGTCAGTCAAAATAGAAGTAACTGGTAGAACGATTTAAGTATAGCATATACCAGAATTAGGACAAGTTACCAATTATTAGACCAATAGAGGGGCAAAGTGATAAAATTAATTCCTGTGCTGTCATTCCAAACTGCTTCATCAATGTAACTGGGTTCTGGGGCTTGTCCTGTTTTCACATTCTAAATTGATTTTTGGTTTCATCTTTTGAGCATCCTTGACAAATATGTAGAGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAGGTACCTGTTTTGCTCTATATGCACGTGCTGTTGTGTATTTCTTTGTCTGTGTTGGTTAGAAGAGGGTTGTAAAGGGAAGGTTCAAAATAAATTATATGTCTGTTTGGTGTTGAAAGTGTGATAGATTAGTAGGAAAAAGGGAGGAGGAAATTGACATATAAAAGCATTTATGTATGAAAAGTACTCGTGTTGTGCAAGTTCAAGTAATTTTCTCTATTTATACTAAAACCAACAAAAATATCTTGACTGTTGATATATGATTTTAATTCGAGGCGGAGATATACAAAGGGTTGTCCCGTTGTTTTGCTACCTCTTTGAGATAGAGTACATCTAGTGACAAATATTGATATGCCAAAATTACACATGTTCCTAAATCATATAATCTATTTCATAGCTCCAGAAAGTTCAAAGGTGAGACCATAATCAGTTTATCTATGCATTGTAAGTGGGAGGAGCAGGTTTTCCACCAAAACTATAGAAAGTAAAGACTTACTAAGGAAAGAAATTGAAATGTAAGAGCAAAGTGGGAGTAATGACACCTGATGTTCATTTGGACATTAATTCTCTAGGTTTTTTTTCTTTCAACCCCCAAAGGTTTCTCCTTTCTTCTTTTTCTAAAATGTCCCATGAAAGTCATACCCATCTTGGAGACCATATTTGGTTATATTTTGTCTCTATTATGCCTGATCTCCAAAGCTATTGTATCTAGTGTTGTCAAAGGCACGCTAAAGCCTGATATGAGGCTCTAAACGTGTTGAGTGCTTCGCGTCACTTAGTATGTGCTTCACTGTCGTCATCAAGGTTTTAAGACATACAAACCTTGCCAATGAGTGGTTCTTGAAGAGACGGCACTAAAAAATTAATCTTTCAGTGTCTTTGTATGTTATATATGTTATTTGTGCTTATAATATTAGTCTTGGACTAAACATATGTAATTTTGTATCCATTTGCGTCTTTTTCATAAAAGCCACACTTTATTTGCGCTTTGCGCTTAAAGACCCAACAGACGTTAGAGTTATTTTTGTGTTTTTTGCTTTTCATAACACTGATGAATCAAGTGTTCATCTGGGACTTCTCATCAGGGAAATTCTTAAAAACTTATATTATCACGGTCCTCTATTGGCGTATTCATGCCTCTTCTTATTATACTATTTTGGCATTTAGAAATTGATGTTATTAGCACAAGTGTCTTCCTCCCATAAAAATAGATGGATATTCTTGACCGTCATTCGTAAGGTGATACTAGAAAGAATTGCTATCTGACCAATTGATTCCCATGTTCTTGCTTATATTCTTTTTCTATGGCAGATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</genome_strand>
        <mrna_strand>TCAAGCTGACATAGCACCACTGATG........................................................................................................TCCACTCTTCTTGGTCTGCCATGTCCTGTCAACTCGGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG.......................................................................................................................................................GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGCAATCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAATGAAATTATCTGAACAGCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTCCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTGATACTCCATGTCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGAGCAAGTGCCTAGTCCAAGAAGTACAGCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319157" ref_strand="+" ref_description="SGN-U319157        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | heavy-metal-associated domain-containing protein, Pfam profile PF00403: Heavy-metal-associated domain | chr5:4823717-4825373 FORWARD | Aliases: F2G14.30, F2G14_30(evalue: 9e-30, score=127) genbank/nr: gi|18417512|ref|NP_568306.1| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] gi|14517526|gb|AAK62653.1| AT5g14910/F2G14_30 [Arabidopsis thaliana] gi|15810113|gb|AAL06982.1| AT5g14910/F2G14_30 [Arabidopsis thaliana] gi|21554207|gb|AAM63286.1| unknown [Arabidopsis thaliana](evalue: 7e-28, score=127)">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttacttgttgaaacaagtggtatacgattggaaaaagtacttcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131995" stop="128279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131695" g_stop="131298" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128579" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="906" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="907" polyA_stop="916"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U319157" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131695" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAAGTACTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328429" ref_strand="+" ref_description="SGN-U328429        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gaacaatgaatgaagctgctattccttccgtgactaactctttagaggtaaattgagtgtgtaaaattcaaagcttcttctggtacatgctaatttgttgacacttcacaaaacacattacttgtctgctgcatttgagatacaatgtagtagcagttgcagggactctgagtttttatttttctgtgtaatattaatgctacttgtgaatcaccagaagactcgctattacattgaagagtgaaataaacaacacaggttgtttacactttaaaggacaaattaaagaaaggaaaacgttctgatctttctgagggatttaaactctttttttcttggaactaggcatatctgagatcttataatctagaatcaaagaatcagatacagatattcatctgattctagtttttcagaagctgcaagagagaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtaggttcctacattcaatatgcaatatagtggacaacttccaggtggactatcttgtgctgcctttttgtgtttggagtttctctataaatgataggaacagtctatctaaatgaacgatatcctttaacttttgatggtgagggaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="130892" stop="129323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130592" g_stop="129623" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="970" r_length="970" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U328429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130592" e_stop="129623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</genome_strand>
        <mrna_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGGTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTGATGGTGAGGGAAAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316805" ref_strand="+" ref_description="SGN-U316805        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT3G01410.1 | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5 (evalue: 4e-77, score=179) genbank/nr: gi|78708782|gb|ABB47757.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-44, score=184)">
      <seq>ctcttcccaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctatgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctgaaaaaaaaaaaaaaaaaaaaacctgcagcccgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139610" stop="81637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139310" g_stop="139265" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138974" g_stop="138825" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="196" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="355" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="514" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135873" i_stop="134571" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134570" g_stop="134463" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="615" r_length="101" r_score="0.935"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134383" g_stop="134240" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="759" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="133061" g_stop="132954" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="867" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="132524" g_stop="132473" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="919" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="132405" g_stop="132130" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1195" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="132129" i_stop="131909" i_length="221">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="131908" g_stop="131881" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1222" r_length="27" r_score="0.786"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="131880" i_stop="130600" i_length="1281">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="130599" g_stop="130586" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1223" r_stop="1236" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U316805" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1244</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139310" e_stop="139265"/>
          <exon e_start="138974" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134570" e_stop="134463"/>
          <exon e_start="134383" e_stop="134240"/>
          <exon e_start="133061" e_stop="132954"/>
          <exon e_start="132524" e_stop="132473"/>
          <exon e_start="132405" e_stop="132130"/>
          <exon e_start="131908" e_stop="131881"/>
          <exon e_start="130599" e_stop="130586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAAATCTGTCTTGCTGTTACTCTTCCCCAGTATACATACTTTTTAAATTTAAATGGGATATCTTGGATTGCCGTTTCTACAACTGGGTTTCAACAATGTCAATAAAACAAGCATTATATTTAAACTAACAATATCACGATAACAACCATTCAAACGAGTGATTTCTTGAGTGAGAATAAATATACTACTTTAGTAAAATTGGAGAAGATATCACTTTAGCTCAAAAAAAAAATAAAAAAACTACATTGTAAGACTAAAATTGTTAGTTATTTTTAATGTTACTCTATTTTTTAAAAATAGTTGTGATAAATACAAATAATTGAATAAATTATACTTATATTTATTATATAAAAATATCATAGGATGAAATAATCTACTATCAGTAGTATAAATTTACTGACTTCAACATTATTTTGTCCCAAATATCCATAGGTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAAT</genome_strand>
        <mrna_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-CCCCC--C-T--A-TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCC.............................................................................................................................................................................................................................CTGAAAAAAAAAAAAAAAAAAAAAC-CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCCGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342486" ref_strand="+" ref_description="SGN-U342486        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="136161" stop="135104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135861" g_stop="135404" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-U342486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135861" e_stop="135404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</genome_strand>
        <mrna_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4961" PGL_stop="1275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4961" e_stop="4497"/>
            <exon e_start="4400" e_stop="4335"/>
            <exon e_start="3466" e_stop="3353"/>
            <exon e_start="2738" e_stop="2500"/>
            <exon e_start="2307" e_stop="2149"/>
            <exon e_start="2043" e_stop="1892"/>
            <exon e_start="1809" e_stop="1275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.704" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.847" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4961" e_stop="4497" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.704">
            <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4400" e_stop="4335" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3466" e_stop="3353" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="2738" e_stop="2500" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.847">
            <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2307" e_stop="2149" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.756">
            <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2043" e_stop="1892" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="1809" e_stop="1275" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4961" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2500"/>
              <exon start="2307" stop="2149"/>
              <exon start="2043" stop="1892"/>
              <exon start="1809" stop="1275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG : ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG : GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG : GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG : ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT : GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG : CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</gDNA_template>
            <first_frame> F  N  V  G  P  *  E  *  K  K  S  V  K  N  F  I  F  N  F  P  Y  K  T  *  L  K  K  Q  L  L  Q  F  Q  C  K  L  S  *  K  K  N  S  Y  F  N  P  G  P  *  H  I  V  F  I  E  H  T  H  S  Y  E  *  I  S  D  F  *  V  K  L  M  S  A  T  R  R  S  *  R  F  *  R  K  K  Q  R  K  N  G  K  Q  *  Q  R  D  N  F  L  Q  R  S  A  T  I  C  S  Y  G  D  Y  G  M  Y  K  C  W  I  K  Y  A  L  Q  S  C  Y  *  Q  R  H  E  *  S  C  L  C  C  L  *  L  W  S  C  G  S  S  A  S  S  F  S  F  L  L  H  Q  :  I  K  N  S  S  T  S  Q  L  L  D  S  C  Q  N  L  S  S  W  S  Y  R  :  V  Y  I  T  D  N  G  V  Y  R  H  Y  L  C  L  S  N  A  C  L  R  H  Q  Q  S  R  P  C  F  Y  F  R  L  G  C  H  F  Q  :  D  G  E  D  T  V  E  K  I  N  H  S  S  Q  S  V  G  H  G  G  V  H  S  W  S  H  S  *  *  L  C  T  K  A  Q  K  Y  *  C  L  P  Q  P  H  P  I  Y  Y  V  N  L  S  A  H  L  N  R  I  G  C  L  V  A  F  S  S  Q  L  N  I  F  *  S  Q  C  G  I  *  F  R :   H  G  L  *  R  C  I  Q  Q  K  *  R  *  F  S  S  T  T  *  L  L  A  S  *  L  L  L  *  D  F  Y  L  N  L  T  Q  T  N  G  *  L  N  R  I  S  H  W  P  P  S  S  A  L :   E  Y  W  V  H  P  *  I  I  Q  F  T  P  G  L  C  A  *  K  D  Q  Y  M  *  Q  C  L  N  H  C  P  S  R  L  Q  L  P  W  E  S  F  S  *  E  I  L  F  I  W  E   : A  S  L  E  Q  R  *  L  Q  L  D  S  I  R  *  C  G  E  R  Q  K  R  C  L  N  I  M  I  L  V  I  S  S  R  L  Q  I  K  S  S  P  C  Y  T  T  T  K  M  K  A  S  Q  T  S  E  P  L  V  *  K  Q  N  G  T  S  H  K  R  Q  E  K  L  H  H  L  L  *  T  K  N  E  Y  G  V  V  Q  E  E  T  I  C  R  Y  G  K  K  R  S  S  K  I  V  G  I  Y  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L   </first_frame>
            <second_frame>  S  M  *  D  L  R  N  K  K  K  V  *  K  I  S  S  L  I  F  P  I  K  L  S  *  K  N  S  C  F  N  F  N  V  S  L  A  E  K  K  T  V  T  L  I  L  D  H  N  I  S  Y  L  L  N  T  H  T  R  M  N  K  Y  Q  I  F  R  *  S  S  C  P  P  R  V  E  V  E  D  F  E  E  K  N  R  G  K  M  G  S  N  N  R  E  T  T  F  Y  K  E  V  L  P  F  A  A  M  V  T  M  E  C  I  N  V  G  L  N  T  L  Y  K  A  A  T  N  K  G  M  S  N  H  V  F  V  V  Y  S  Y  G  L  A  A  L  L  L  L  P  S  P  F  F  S  T  R :   S  R  I  L  P  P  L  N  C  S  I  L  A  K  I  F  L  L  G  V  I  G :   C  T  S  Q  I  M  G  Y  T  G  I  I  Y  A  S  P  T  L  A  S  A  I  S  N  L  V  P  A  F  T  F  V  L  A  V  I  F  R :   M  E  K  I  Q  L  K  R  S  T  T  R  A  K  V  L  G  T  V  V  S  I  A  G  A  I  R  S  N  S  V  Q  R  P  K  N  I  S  A  Y  H  S  H  T  Q  F  T  T  S  T  S  Q  L  I  S  I  E  L  D  A  W  W  P  F  P  H  N  *  I  F  F  S  P  N  V  V  Y  S  S   : D  M  D  Y  E  G  V  S  S  R  S  D  G  S  F  L  L  Q  L  N  C  *  H  P  S  C  Y  C  R  I  F  I  *  T  *  L  K  Q  M  D  N  *  T  G  Y  R  T  G  L  H  P  L  L   : W  N  I  G  F  I  L  K  *  Y  N  S  H  L  G  F  A  R  E  R  T  S  I  C  S  N  V  *  T  I  V  H  R  D  C  S  C  H  G  S  H  S  L  R  R  Y  S  L  F  G  K  :  H  R  W  S  N  G  N  C  N  W  I  L  Y  G  N  V  G  K  G  K  R  D  V  *  I  *  *  F  *  *  S  R  V  V  S  R  S  K  V  P  L  V  T  Q  L  Q  K  *  R  H  L  K  Q  V  N  H  *  F  E  S  R  M  G  R  H  T  K  G  R  K  N  Y  T  I  F  Y  E  P  K  T  S  M  G  L  Y  R  K  K  Q  Y  A  V  M  G  K  K  G  V  A  K  L  L  A  Y  I  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  </second_frame>
            <third_frame>   Q  C  R  T  L  G  I  K  K  K  C  K  K  F  H  L  *  F  S  L  *  N  L  A  K  K  T  V  A  S  I  S  M  *  A  *  L  K  K  K  Q  L  L  *  S  W  T  I  T  Y  R  I  Y  *  T  H  T  L  V  *  I  N  I  R  F  L  G  K  A  H  V  R  H  A  *  K  L  K  I  L  K  K  K  T  E  E  K  W  E  A  I  T  E  R  Q  L  F  T  K  K  C  Y  H  L  Q  L  W  *  L  W  N  V  *  M  L  D  *  I  R  F  T  K  L  L  L  T  K  A  *  V  I  M  S  L  L  F  I  V  M  V  L  R  L  F  C  F  F  L  L  L  S  S  P  P   : D  Q  E  F  F  H  L  S  I  A  R  F  L  P  K  S  F  F  L  E  L  S   : G  V  H  H  R  *  W  G  I  Q  A  L  S  M  P  L  Q  R  L  P  P  P  S  A  I  S  S  L  L  L  L  S  S  W  L  S  F  S   : G  W  R  R  Y  S  *  K  D  Q  P  L  E  P  K  C  W  A  R  W  C  P  *  L  E  P  F  V  V  T  L  Y  K  G  P  K  I  L  V  P  T  T  A  T  P  N  L  L  R  Q  P  L  S  S  S  Q  S  N  W  M  L  G  G  L  F  L  T  T  E  Y  F  L  V  P  M  W  Y  I  V  Q  :  T  W  I  M  K  V  Y  P  A  E  V  T  V  V  F  F  Y  N  L  T  V  S  I  L  A  A  I  V  G  F  L  S  E  P  D  S  N  K  W  I  I  K  P  D  I  A  L  A  S  I  L  C  S  :  G  I  L  G  S  S  L  N  N  T  I  H  T  W  A  L  R  V  K  G  P  V  Y  V  A  M  F  K  P  L  S  I  A  I  A  V  A  M  G  V  I  L  L  G  D  T  L  Y  L  G  S :   I  V  G  A  T  V  I  A  I  G  F  Y  T  V  M  W  G  K  A  K  E  M  S  E  Y  N  D  S  S  D  L  E  S  S  P  D  Q  K  F  P  L  L  H  N  Y  K  N  E  G  I  S  N  K  *  T  I  S  L  K  A  E  W  D  V  T  Q  K  A  G  K  I  T  P  S  F  M  N  Q  K  R  V  W  G  C  T  G  R  N  N  M  P  L  W  E  K  K  E  *  Q  N  C  W  H  I  Y  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4756" stop="4497"/>
                    <exon start="4400" stop="4335"/>
                    <exon start="3466" stop="3353"/>
                    <exon start="2738" stop="2534"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCPPRVEVEDFEEKNRGKMGSNNRETTFYKEVLPFAAMVTMECINVGLNTLYKAATNKGMSNHVFVVYSYGLAALLLLPSPFFSTRSRILPPLNCSILAKIFLLGVIGCTSQIMGYTGIIYASPTLASAISNLVPAFTFVLAVIFRMEKIQLKRSTTRAKVLGTVVSIAGAIRSNSVQRPKNISAYHSHTQFTTSTSQLISIELDAWWPFPHN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2670" stop="2500"/>
                    <exon start="2307" stop="2149"/>
                    <exon start="2043" stop="1892"/>
                    <exon start="1809" stop="1647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEPFVVTLYKGPKILVPTTATPNLLRQPLSSSQSNWMLGGLFLTTEYFLVPMWYIVQTWIMKVYPAEVTVVFFYNLTVSILAAIVGFLSEPDSNKWIIKPDIALASILCSGILGSSLNNTIHTWALRVKGPVYVAMFKPLSIAIAVAMGVILLGDTLYLGSIVGATVIAIGFYTVMWGKAKEMSEYNDSSDLESSPDQKFPLLHNYKNEGISNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1579" stop="1277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNEYGVVQEETICRYGKKRSSKIVGIYIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8900" PGL_stop="10339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8900" e_stop="10339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8900" e_stop="10339" e_length="1440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8900" stop="10339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTAATGACGACTAACTTTCTTAACAAAAGG</gDNA_template>
            <first_frame> C  K  K  E  G  K  K  K  G  V  Y  E  S  W  K  V  R  *  A  E  N  *  A  *  I  G  R  H  S  L  A  R  S  T  K  L  L  Y  N  I  E  F  L  E  I  *  R  *  S  K  S  T  M  G  L  F  S  Y  T  V  A  G  G  G  F  I  L  I  G  A  W  E  S  L  V  S  S  S  G  A  L  K  N  S  S  P  S  S  T  T  Q  S  P  P  Q  N  P  S  T  D  K  H  E  Q  D  S  V  F  S  S  S  V  T  F  V  L  I  L  I  L  S  F  L  F  V  L  D  S  L  L  S  F  F  D  A  L  N  S  K  D  N  I  G  S  V  L  Q  L  Q  V  I  A  I  S  L  L  F  F  L  Y  S  V  L  G  L  M  T  R  L  K  S  S  F  H  L  P  S  P  I  L  N  L  L  C  L  F  A  F  A  E  E  F  L  L  F  Y  L  Q  R  K  D  P  S  G  V  E  N  R  Y  Y  N  L  L  L  V  P  I  A  I  C  A  F  C  S  F  L  E  L  K  N  P  K  S  N  Y  T  R  L  G  R  G  I  G  L  I  L  Q  G  T  W  T  L  Q  M  G  F  A  F  F  S  D  L  I  A  Q  G  C  Y  L  H  Q  R  S  R  G  N  Y  T  V  K  C  K  G  H  P  Q  Y  H  R  G  G  A  I  A  T  L  Q  F  N  C  H  L  A  L  L  V  T  V  I  T  F  V  Y  S  I  V  C  K  K  H  G  I  G  R  E  H  M  R  Y  R  P  I  G  A  E  M  Q  H  L  E  I  D  S  Q  A  H  F  T  L  E  S  D  E  E  D  D  N  E  N  G  I  K  E  E  M  N  V  E  M  Q  K  A  I  V  P  V  P  E  S  E  T  N  G  Y  H  T  H  P  *  G  N  P  W  F  I  F  Y  V  T  G  Y  K  D  I  F  F  A  E  G  L  W  F  R  G  W  G  S  L  C  I  K  N  L  H  I  E  K  R  K  F  Q  S  F  C  I  *  *  F  *  F  K  L  *  C  C  L  R  N  F  L  *  S  D  L  S  I  F  S  F  I  V  C  L  W  K  T  Y  S  L  I  V  M  T  T  N  F  L  N  K  R </first_frame>
            <second_frame>  V  R  R  K  G  K  R  K  E  Y  M  S  L  G  K  S  G  E  Q  K  I  E  P  K  *  A  G  T  A  W  P  D  Q  R  S  F  S  I  T  *  N  F  L  R  S  N  D  N  Q  S  Q  Q  W  G  Y  S  A  I  L  S  P  A  A  D  L  Y  *  S  A  L  G  N  L  W  S  L  L  L  V  P  *  K  I  H  H  R  R  P  L  P  N  R  R  H  K  I  H  R  Q  I  S  M  S  K  I  L  F  F  L  H  R  S  P  L  Y  *  S  *  S  F  R  S  F  S  F  S  I  P  C  Y  P  F  S  T  H  S  T  P  K  T  T  L  V  P  S  F  N  C  R  L  S  R  F  L  F  F  S  F  S  I  R  Y  *  V  S  *  P  A  *  K  V  L  F  I  Y  L  H  R  S  S  I  C  F  A  S  S  L  L  L  R  N  F  C  C  F  I  F  K  G  K  T  Q  V  E  L  K  I  V  T  I  I  S  C  L  C  L  L  L  F  V  H  F  V  H  F  *  N  *  K  I  P  N  Q  I  T  L  D  *  D  V  G  L  G  *  S  C  K  G  R  G  L  F  K  W  G  L  L  F  S  P  I  *  L  H  R  D  A  I  Y  I  K  G  V  E  V  I  T  R  L  S  V  K  V  I  L  S  T  I  E  V  E  L  L  L  P  F  S  S  I  A  T  L  L  F  L  *  L  *  L  L  L  Y  T  Q  L  C  V  K  N  M  A  L  A  V  N  I  C  G  I  D  L  L  E  L  R  C  N  T  W  K  S  I  V  K  L  I  L  H  W  S  L  M  K  R  M  T  M  R  M  G  *  K  K  R  *  M  L  K  C  K  R  L  L  Y  L  F  L  N  Q  K  L  M  A  I  I  P  I  L  E  E  T  H  G  S  F  F  M  L  L  G  I  K  I  Y  S  L  Q  R  G  Y  G  L  E  V  G  V  P  F  V  *  R  I  Y  I  *  K  R  E  S  F  S  L  F  V  F  D  D  S  S  S  N  C  N  V  V  L  E  I  F  F  E  V  I  *  V  Y  F  P  L  L  C  V  Y  G  R  L  T  L  *  *  *  *  R  L  T  F  L  T  K   </second_frame>
            <third_frame>   *  E  G  R  E  K  E  R  S  I  *  V  L  E  S  Q  V  S  R  K  L  S  L  N  R  Q  A  Q  P  G  Q  I  N  E  A  S  L  *  H  R  I  S  *  D  L  T  I  I  K  V  N  N  G  A  I  Q  L  Y  C  R  R  R  R  I  Y  T  N  R  R  L  G  I  S  G  L  F  F  W  C  P  E  K  F  I  T  V  V  H  Y  P  I  A  A  T  K  S  I  D  R  *  A  *  A  R  F  C  F  F  F  I  G  H  L  C  I  N  L  N  P  F  V  P  F  R  S  R  F  L  V  I  L  F  R  R  T  Q  L  Q  R  Q  H  W  F  R  P  S  I  A  G  Y  R  D  F  S  S  F  L  S  L  F  G  I  R  S  H  D  P  L  E  K  F  F  S  F  T  F  T  D  P  Q  F  A  L  P  L  R  F  C  *  G  I  F  V  V  L  S  S  K  E  R  P  K  W  S  *  K  S  L  L  *  S  L  A  C  A  Y  C  Y  L  C  I  L  F  I  S  R  I  E  K  S  Q  I  K  L  H  *  I  R  T  W  D  W  V  N  L  A  R  D  V  D  S  S  N  G  V  C  F  F  L  R  F  D  C  T  G  M  L  F  T  S  K  E  *  R  *  L  H  G  *  V  *  R  S  S  S  V  P  S  R  W  S  Y  C  Y  P  S  V  Q  L  P  P  C  S  S  C  D  C  D  Y  F  C  I  L  N  C  V  *  K  T  W  H  W  P  *  T  Y  A  V  *  T  Y  W  S  *  D  A  T  L  G  N  R  *  S  S  S  F  Y  I  G  V  *  *  R  G  *  Q  *  E  W  D  K  R  R  D  E  C  *  N  A  K  G  Y  C  T  C  S  *  I  R  N  *  W  L  S  Y  P  S  L  R  K  P  M  V  H  F  L  C  Y  W  V  *  R  Y  I  L  C  R  G  V  M  V  *  R  L  G  F  P  L  Y  K  E  F  T  Y  R  K  E  K  V  S  V  F  L  Y  L  M  I  L  V  Q  I  V  M  L  S  *  K  F  S  L  K  *  F  K  Y  I  F  L  Y  C  V  S  M  E  D  L  L  F  D  S  N  D  D  *  L  S  *  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9044" stop="10066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSTMGLFSYTVAGGGFILIGAWESLVSSSGALKNSSPSSTTQSPPQNPSTDKHEQDSVFSSSVTFVLILILSFLFVLDSLLSFFDALNSKDNIGSVLQLQVIAISLLFFLYSVLGLMTRLKSSFHLPSPILNLLCLFAFAEEFLLFYLQRKDPSGVENRYYNLLLVPIAICAFCSFLELKNPKSNYTRLGRGIGLILQGTWTLQMGFAFFSDLIAQGCYLHQRSRGNYTVKCKGHPQYHRGGAIATLQFNCHLALLVTVITFVYSIVCKKHGIGREHMRYRPIGAEMQHLEIDSQAHFTLESDEEDDNENGIKEEMNVEMQKAIVPVPESETNGYHTHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15257" PGL_stop="14016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15257" e_stop="15108"/>
            <exon e_start="14947" e_stop="14016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.550" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15257" e_stop="15108" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.550">
            <gDNA_intron_boundary i_start="15107" i_stop="14948" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14947" e_stop="14016" e_length="932"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15257" stop="15108"/>
              <exon start="14947" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329242" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA : ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</gDNA_template>
            <first_frame> V  L  Y  T  *  H  G  W  *  N  Y  S  Y  Q  V  L  G  R  S  Y  S  *  S  Y  *  S  G  Y  L  K  I  D  L  W  *  D  C  G  T  R  Y  Q  Q  V  K  S  C  *  D  R  :  T  *  K  C  T  T  L  P  T  R  F  R  Q  H  G  G  Y  G  *  K  A  G  E  W  D  S  R  N  S  K  S  S  T  T  S  T  A  S  M  D  Y  A  S  D  V  C  S  D  F  S  T  T  C  N  I  F  H  *  T  R  Y  D  N  E  E  K  H  R  K  Q  L  P  N  S  T  S  C  T  S  E  F  N  H  N  I  Y  N  P  A  Y  A  S  L  R  H  V  L  Y  P  L  H  S  C  F  D  T  *  *  E  R  H  H  C  D  A  E  N  G  N  R  D  V  S  F  S  D  S  N  D  N  C  C  C  Y  R  K  K  K  T  G  Y  C  Q  K  C  R  Y  F  N  F  R  I  R  S  F  A  N  E  H  I  L  V  A  A  S  V  H  L  I  G  N  F  R  Y  I  H  S  C  W  Y  A  R  V  L  L  L  *  S  S  D  K  Y  E  N  F  R  H  S  S  L  Y  *  C  I  W  L  W  *  F  L  Q  L  I  P  Y  N  S  D  *  T  F  D  K  F  N  R  R  K  A  E  L  V  R  R  *  H  E  Q  S  P  F  R  Q  L  L  L  V  S  G  I  V  K  C  S  Q  F  Y  D  V  Y  G  F  L  S  I  L  *  K  Q  D  S  *  L  E  C  W  *  *  L  I  I  C  Y  C  G  M  L  C  F  A  H  S  F  F  *  V  E  S  E  G  S  A  L  V  Y  K  G  R  Y  I   </first_frame>
            <second_frame>  F  Y  T  H  N  T  D  G  E  I  I  H  I  K  S  L  G  G  H  I  V  K  A  I  R  A  A  T  S  R  L  T  C  G  E  I  A  V  P  D  T  N  K  S  K  V  V  E  I  E :   L  E  N  A  P  L  C  Q  Q  D  S  G  S  T  E  G  T  D  K  K  P  E  N  G  I  V  E  I  L  K  V  V  L  P  L  L  P  V  W  T  M  L  L  M  F  A  V  I  F  Q  Q  P  A  T  F  F  T  K  Q  G  M  T  M  R  R  N  I  G  S  S  F  R  I  P  P  A  A  L  Q  S  S  I  T  I  S  I  I  L  L  M  P  L  Y  D  T  C  F  I  P  F  I  R  V  L  T  R  N  E  K  G  I  T  V  M  Q  R  M  G  I  G  M  F  L  S  V  I  A  M  I  I  A  A  V  T  E  R  K  R  L  D  I  A  R  N  V  G  T  L  T  S  E  F  E  A  L  P  M  S  I  F  W  L  L  P  Q  Y  I  L  L  G  I  S  D  I  F  T  V  V  G  M  Q  E  F  F  Y  S  E  V  P  I  N  M  R  T  L  G  I  A  L  Y  T  S  V  F  G  C  G  S  F  F  S  S  F  L  I  T  V  I  E  H  L  T  S  S  I  G  E  K  Q  N  W  F  A  D  D  M  S  R  A  R  L  D  N  Y  Y  W  F  L  A  L  S  S  A  A  S  F  M  M  F  M  V  F  C  R  F  Y  R  S  R  T  V  N  *  S  V  G  S  D  *  *  F  V  I  V  E  C  C  V  L  H  I  H  F  S  K  *  K  V  K  V  L  H  L  Y  I  K  E  D  I  S  </second_frame>
            <third_frame>   F  I  H  I  T  R  M  V  K  L  F  I  S  S  P  W  E  V  I  *  L  K  L  L  E  R  L  P  Q  D  *  P  V  V  R  L  R  Y  Q  I  P  T  S  Q  K  L  L  R  S   : N  L  K  M  H  H  S  A  N  K  I  Q  A  A  R  R  V  R  I  K  S  R  R  M  G  *  *  K  F  *  K  *  Y  Y  L  Y  C  Q  Y  G  L  C  F  *  C  L  Q  *  F  F  N  N  L  Q  H  F  S  L  N  K  V  *  Q  *  G  E  T  S  E  A  A  S  E  F  H  Q  L  H  F  R  V  Q  S  Q  Y  L  *  S  C  L  C  L  F  T  T  R  A  L  S  P  S  F  V  F  *  H  V  M  R  K  A  S  L  *  C  R  E  W  E  *  G  C  F  F  Q  *  *  Q  *  *  L  L  L  L  P  K  E  K  D  W  I  L  P  E  M  *  V  L  *  L  Q  N  S  K  L  C  Q  *  A  Y  F  G  C  C  L  S  T  S  Y  W  E  F  Q  I  Y  S  Q  L  L  V  C  K  S  S  F  T  L  K  F  R  *  I  *  E  L  *  A  *  L  F  I  L  V  Y  L  V  V  V  V  S  S  A  H  S  L  *  Q  *  L  N  I  *  Q  V  Q  *  E  K  S  R  T  G  S  P  M  T  *  A  E  P  V  *  T  T  I  T  G  F  W  H  C  Q  V  Q  P  V  L  *  C  L  W  F  S  V  D  F  I  E  A  G  Q  L  I  R  V  L  V  V  T  D  N  L  L  L  W  N  V  V  F  C  T  F  I  F  L  S  R  K  *  R  F  C  T  C  I  *  R  K  I  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15256" stop="15108"/>
                    <exon start="14947" stop="14128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYTHNTDGEIIHIKSLGGHIVKAIRAATSRLTCGEIAVPDTNKSKVVEIELENAPLCQQDSGSTEGTDKKPENGIVEILKVVLPLLPVWTMLLMFAVIFQQPATFFTKQGMTMRRNIGSSFRIPPAALQSSITISIILLMPLYDTCFIPFIRVLTRNEKGITVMQRMGIGMFLSVIAMIIAAVTERKRLDIARNVGTLTSEFEALPMSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPINMRTLGIALYTSVFGCGSFFSSFLITVIEHLTSSIGEKQNWFADDMSRARLDNYYWFLALSSAASFMMFMVFCRFYRSRTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20391" PGL_stop="24145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20391" e_stop="20535"/>
            <exon e_start="20679" e_stop="20942"/>
            <exon e_start="21537" e_stop="21686"/>
            <exon e_start="21945" e_stop="22078"/>
            <exon e_start="22188" e_stop="22401"/>
            <exon e_start="22564" e_stop="22709"/>
            <exon e_start="22796" e_stop="23020"/>
            <exon e_start="23109" e_stop="23311"/>
            <exon e_start="23454" e_stop="23697"/>
            <exon e_start="23778" e_stop="24145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.012" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20391" e_stop="20535" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.012">
            <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20679" e_stop="20942" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21537" e_stop="21686" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21945" e_stop="22078" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22188" e_stop="22401" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22564" e_stop="22709" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22710" i_stop="22795" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22796" e_stop="23020" e_length="225"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="23109" e_stop="23311" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23454" e_stop="23697" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="23778" e_stop="24145" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20391" stop="20535"/>
              <exon start="20679" stop="20942"/>
              <exon start="21537" stop="21686"/>
              <exon start="21945" stop="22078"/>
              <exon start="22188" stop="22401"/>
              <exon start="22564" stop="22709"/>
              <exon start="22796" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="23998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23466" stop="23697"/>
              <exon start="23778" stop="24145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335547" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG : ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG : TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG : GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG : AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG : GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA : AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</gDNA_template>
            <first_frame> L  Q  V  I  L  I  S  R  I  N  N  V  F  C  Y  A  Q  E  S  L  A  I  L  S  P  *  I  H  P  Q  R  F  P  *  D  L  *  Q  N  D  S  H  R  *  I  I  F  F   : D  C  S  F  Y  *  *  T  *  L  L  A  P  A  T  G  I  L  R  V  T  L  S  W  S  T  A  E  S  S  P  A  I  *  F  D  Q  R  R  *  N  T  Y  R  S  S  I  K  S  G  R  L  P  L  Q  N  C  *  W  K  I  Q  *  P  F  *  *  R  N  R  Q  S  I  F  F  L  W  Q  E  Y  D  A  S  S  S  E  *  *   : V  K  K  A  R  S  N  G  S  S  N  E  A  S  S  T  K  K  I  H  R  H  W  K  T  I  Q  Y  D  S  C  F  L  D  T  V  Y  G  S  *  L  D  R  S  F  G  R  Y  S  T   : G  *  A  K  G  T  K  R  S  C  *  *  M  P  T  Q  V  L  *  V  *  Q  I  Q  R  N  S  Y  R  F  L  *  N  Q  N  R  S  L  E  Q  P  Y  S  L  V  :  G  R  K  C  N  L  W  K  *  R  G  C  F  E  E  S  E  N  I  *  R  R  K  T  E  I  R  *  K  W  T  H  P  T  R  *  K  W  K  N  Y  L  W  *  C  S  *  H  L  G  W  T  F  N  A  S  S  S  L  C  S  R  A  Q  C  C  L  *  H  F  E   : E  R  I  S  R  I  R  G  *  R  V  V  S  S  C  K  A  S  H  F  S  C  N  C  K  S  S  H  H  R  L  D  C  S  A  S  E  N  R  Y  Y  A  C  R  N  A  C  Q  L  :  V  W  I  T  R  K  E  V  Q  G  Y  I  W  S  C  W  F  H  F  K  W  C  C  W  N  E  E  T  *  E  S  W  S  A  L  F  L  N  *  R  I  Y  E  C  L  *  N  A  S  T  V  T  *  Y  T  S  A  K  K  Y  R  C  H  A  W  A  K  Q  I  S  S  F  N  *  *  :  N  S  H  G  R  S  S  W  E  *  R  K  R  E  F  I  K  N  W  V  Y  *  A  N  G  F  N  G  A  S  S  *  W  S  S  *  A  L  E  L  S  S  V  D  E  R  S  Y  C  P  R  C  *  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  G  *  R  K  K  C  S  *  V  Q  *  L  *  K  R  N  A  S  N  S  Y  F  E  M  G  R  F  D  R  *  *  R  S  N  Q  N  T  W  *  S  I  *  *  *  Y  R  R  V  G  F  I  S  G  T  H  G  G  E  K  N  *  R  I  C  H  F  R  N  S  L  Q  H  I  P  S  H  G  Y  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  *  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  K  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  *  S  Y  S  T  L  F  S  C  S  S  V  V  D  L  K  I  M  C  V  T  I  Y  *  Y  R  N  T  Y  K  F  V  F  K  V  S  C  S  I  S  S  K  *  Y  I  V  S  W  S  V  K  I  T  I  S  *  *  F  V   </first_frame>
            <second_frame>  Y  K  *  Y  *  F  L  V  *  T  M  S  F  V  M  L  K  N  L  L  L  S  S  L  R  K  F  I  H  K  D  F  H  E  I  F  D  K  M  T  L  I  D  K  L  F  F  L  :  I  V  H  F  I  D  K  H  N  F  W  H  R  L  P  V  F  F  G  L  L  Y  L  G  A  R  R  S  L  H  Q  Q  Y  N  L  I  N  V  G  R  T  P  T  G  V  R  S  N  P  A  D  Y  P  Y  R  T  A  D  G  K  F  N  D  P  F  N  E  G  T  G  S  Q  F  S  F  F  G  R  N  M  M  P  L  H  Q  N  N  K  :  L  K  K  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  V  H  D  W  I  D  H  L  E  D  T  Q  Q  :  V  E  L  R  A  P  K  E  V  A  N  E  C  P  L  K  S  F  R  F  N  K  S  K  E  T  P  T  D  F  Y  E  I  K  T  G  H  L  N  S  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  E  D  V  L  K  K  V  R  T  F  R  D  G  K  L  K  L  G  E  N  G  L  I  Q  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  L  L  T  L  Q  A  L  F  V  Q  E  H  N  A  V  C  D  T  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  Q  L  L  K  T  D  T  M  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  S  I  L  S  G  V  V  G  M  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  Q  L  R  N  I  D  A  T  P  G  P  N  K  S  L  P  L  T  N  E :   I  P  M  E  E  V  V  G  S  K  G  K  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  V  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  P  R  Y  N  D  F  R  R  G  M  L  Q  I  P  I  S  K  W  E  D  L  T  D  D  E  E  A  I  K  T  L  G  E  V  Y  D  D  D  I  E  E  L  D  L  L  V  G  L  M  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  N  I  F  L  L  M  A  I  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  D  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  I  P  L  Y  F  R  V  P  Q  *  *  T  S  K  S  C  V  *  L  F  I  N  T  V  I  R  T  S  L  Y  L  R  C  L  V  L  F  H  Q  N  N  I  L  Y  L  G  L  *  K  *  L  L  V  S  N  S  Y  </second_frame>
            <third_frame>   T  S  D  I  N  F  S  Y  K  Q  C  L  L  L  C  S  R  I  S  C  Y  P  L  S  V  N  S  S  T  K  I  S  M  R  S  L  T  K  *  L  S  S  I  N  Y  F  F  * :   L  F  I  L  L  I  N  I  T  F  G  T  G  Y  R  Y  S  S  G  Y  F  I  L  E  H  G  G  V  F  T  S  N  I  I  *  S  T  S  V  E  H  L  P  E  F  D  Q  I  R  Q  I  T  L  T  E  L  L  M  E  N  S  M  T  L  L  M  K  E  Q  A  V  N  F  L  S  L  A  G  I  *  C  L  F  I  R  I  I  S :   *  K  S  Q  I  Q  W  *  *  Q  R  S  F  *  H  E  E  N  S  *  T  L  E  N  N  S  I  *  *  L  L  L  G  Y  S  L  W  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  Q  K  K  L  L  M  N  A  H  S  S  P  L  G  L  T  N  P  K  K  L  L  Q  I  F  M  K  S  K  P  V  T  *  T  A  V  L  P  G   : G  T  E  V  *  F  M  E  V  T  R  M  F  *  R  K  *  E  H  L  E  T  E  N  *  N  *  V  K  M  D  S  S  N  K  M  K  M  E  K  L  S  L  V  M  F  V  T  L  G  L  D  F  *  R  F  K  L  S  L  F  K  S  T  M  L  F  V  T  L  *  R :   K  N  I  Q  N  *  R  M  K  S  C  I  V  M  Q  G  *  S  L  Q  L  *  L  Q  K  F  T  P  *  I  G  L  F  S  F  *  K  P  I  L  C  L  Q  E  C  V  P  I   : G  M  D  Y  *  E  R  S  S  R  I  H  L  V  M  L  V  P  F  *  V  V  L  L  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  K  N  L  R  V  F  I  E  C  I  N  C  Y  L  I  H  F  S  *  E  I  *  M  P  R  L  G  Q  T  N  L  F  L  *  L  M   : K  F  P  W  K  K  *  L  G  V  K  E  K  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  G  I  K  L  V  E  L  L  S  F  G  I  I  Q  C  G  *  E  I  L  L  P  K  M  L  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  G  I  E  K  E  V  F  L  G  T  M  T  L  E  E  E  C  F  K  F  L  F  R  N  G  K  I  *  Q  M  M  K  K  Q  S  K  H  L  V  K  Y  M  M  M  I  *  K  S  W  I  Y  *  W  D  S  W  R  R  K  K  L  K  D  L  P  F  Q  K  Q  P  S  T  Y  S  F  S  W  L  *   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  M  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  I  I  L  F  H  S  I  F  V  F  L  S  S  R  P  Q  N  H  V  C  N  Y  L  L  I  P  *  Y  V  Q  V  C  I  *  G  V  L  F  Y  F  I  K  I  I  Y  C  I  L  V  C  E  N  N  Y  *  L  V  I  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20419" stop="20535"/>
                    <exon start="20679" stop="20942"/>
                    <exon start="21537" stop="21686"/>
                    <exon start="21945" stop="22078"/>
                    <exon start="22188" stop="22401"/>
                    <exon start="22564" stop="22709"/>
                    <exon start="22796" stop="23020"/>
                    <exon start="23109" stop="23311"/>
                    <exon start="23454" stop="23697"/>
                    <exon start="23778" stop="24003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSFVMLKNLLLSSLRKFIHKDFHEIFDKMTLIDKLFFLIVHFIDKHNFWHRLPVFFGLLYLGARRSLHQQYNLINVGRTPTGVRSNPADYPYRTADGKFNDPFNEGTGSQFSFFGRNMMPLHQNNKLKKPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMVHDWIDHLEDTQQVELRAPKEVANECPLKSFRFNKSKETPTDFYEIKTGHLNSRTPWWDGSVIYGSNEDVLKKVRTFRDGKLKLGENGLIQQDENGKIISGDVRNTWAGLLTLQALFVQEHNAVCDTLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVQLLKTDTMLAGMRANWYGLLGKKFKDTFGHVGSILSGVVGMKKPENHGVPYSLTEEFTSVYRMHQLLPDTLQLRNIDATPGPNKSLPLTNEIPMEEVVGSKGKENLSRIGFTKQMVSMGHQASGALELWNYPVWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVPRYNDFRRGMLQIPISKWEDLTDDEEAIKTLGEVYDDDIEELDLLVGLMAEKKIKGFAISETAFNIFLLMAIRRLEADRFFTSNYNDETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPIPLYFRVPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32883" PGL_stop="35786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32883" e_stop="32986"/>
            <exon e_start="33124" e_stop="33387"/>
            <exon e_start="33480" e_stop="33629"/>
            <exon e_start="33697" e_stop="33833"/>
            <exon e_start="33924" e_stop="34137"/>
            <exon e_start="34203" e_stop="34348"/>
            <exon e_start="34428" e_stop="34659"/>
            <exon e_start="34736" e_stop="34938"/>
            <exon e_start="35016" e_stop="35252"/>
            <exon e_start="35331" e_stop="35786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.014" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32883" e_stop="32986" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="32987" i_stop="33123" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33124" e_stop="33387" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33480" e_stop="33629" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33630" i_stop="33696" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33697" e_stop="33833" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.906">
            <gDNA_intron_boundary i_start="33834" i_stop="33923" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33924" e_stop="34137" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34203" e_stop="34348" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="34428" e_stop="34659" e_length="232"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="34736" e_stop="34938" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.014">
            <gDNA_intron_boundary i_start="34939" i_stop="35015" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35016" e_stop="35252" e_length="237"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="35331" e_stop="35786" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32883" stop="32986"/>
              <exon start="33124" stop="33387"/>
              <exon start="33480" stop="33629"/>
              <exon start="33697" stop="33833"/>
              <exon start="33924" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34938"/>
              <exon start="35016" stop="35252"/>
              <exon start="35331" stop="35786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG : GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG : GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGA : AATCCCAATGGGAGATTTAATCGGAGGCAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAA : AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</gDNA_template>
            <first_frame> L  C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   *  F  I  S  L  I  N  I  T  C  G  T  G  Y  R  C  F  *  G  *  F  I  L  H  F  V  D  I  L  I  R  N  I  I  *  S  T  W  V  E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  R  S  L  G  H  L  K  K  L  Q  V  N  V  L  S  S  P  L  S  F  T  N  Q  K  K  L  L  P  D  F  T  K  L  K  P  V  I  *  I  G  V  P  L  G   : G  M  E  V  L  F  M  G  A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I   : G  M  D  C  *  G  R  N  L  K  I  H  L  G  T  L  E  V  Q  F  W  V  V  *  *  D  *  K  N  P  K  I  M  E  C  L  I  P  *  L  K  N  L  *  V  C  I  E  C  I  N  S  Y  L  I  N  F  R  L  R  N  I  D  A  T  S  G  T  K  I  N  L  S  L  L  T  N  E :   I  P  M  G  D  L  I  G  G  K  E  R  R  I  Y  Q  E  S  D  L  L  S  R  W  F  Q  W  G  I  K  H  V  E  L  L  S  F  G  I  I  Q  Y  G  *  G  I  L  L  L  K  M  L  M  E  Q  T  G  H  I  M  F  D  L  A  A  L  E   : K  T  E  K  E  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  R  M  I  W  K  L  L  K  H  F  M  K  F  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  K  D  L  P  S  L  R  L  H  F  S  Y  S  F  S  W  H  Q   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  R  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  T  I  L  F  H  S  T  F  V  F  L  N  I  K  L  I  I  P  N  L  F  T  Y  R  K  *  N  M  K  N  C  V  V  Y  F  R  F  Y  V  I  V  S  V  C  *  I  N  D  V  Y  L  S  I  F  I  *  C  F  L  I  R  *  L  *  S  L  Y  F  M  Y  N  V  L  V  L  L  F  L  F  N  V  K  K  L  F  F  L  Y  Q  </first_frame>
            <second_frame>  Y  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : D  S  S  Y  H  *  *  T  *  L  V  A  P  G  T  G  V  F  R  A  S  L  S  C  T  S  S  T  S  *  S  G  I  *  F  D  Q  R  G  *  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  G  A  *  G  T  *  R  S  C  K  S  M  S  S  Q  V  L  *  V  L  Q  I  K  R  N  S  Y  R  I  L  R  N  *  N  R  S  F  E  *  A  Y  P  L  V  :  G  W  K  C  Y  L  W  E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  :  V  W  I  A  R  E  E  I  *  R  Y  I  W  A  R  W  R  C  N  F  G  W  F  S  R  T  K  K  T  R  K  S  W  S  A  L  F  L  N  *  R  I  C  E  C  V  S  N  A  S  T  L  T  *  *  T  S  G  *  E  I  *  M  Q  L  L  G  P  K  *  I  Y  P  F  *  L  T   : K  S  Q  W  E  I  *  S  E  A  R  R  G  E  F  I  K  N  R  I  Y  *  A  D  G  F  N  G  A  S  S  M  W  S  S  *  A  L  E  L  S  N  M  D  E  G  S  Y  C  S  R  C  *  W  N  R  Q  A  T  S  C  L  T  L  Q  H  S  K  :  R  Q  R  K  K  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  D  G  *  Y  G  S  Y  *  N  T  S  *  S  L  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  R  I  C  H  L  *  D  C  I  F  H  I  P  S  H  G  I  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  G  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  E  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  Q  S  C  S  T  L  L  S  C  S  *  T  L  N  *  *  Y  L  I  Y  L  L  I  E  N  E  I  *  R  I  V  W  Y  I  S  V  F  T  *  L  F  Q  F  V  K  L  M  M  C  I  Y  L  S  L  F  N  V  S  *  *  D  N  C  N  L  Y  I  L  C  I  M  F  L  C  Y  S  S  Y  L  T  S  K  N  F  F  F  Y  I  K </second_frame>
            <third_frame>   M  L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  I  V  H  I  I  D  K  H  N  L  W  H  R  V  P  V  F  L  G  L  V  Y  L  A  L  R  R  H  L  N  Q  E  Y  N  L  I  N  V  G  R  T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  E  L  R  A  P  E  E  V  A  S  Q  C  P  L  K  S  F  K  F  Y  K  S  K  E  T  P  T  G  F  Y  E  I  K  T  G  H  L  N  R  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  A  I  L  G  G  L  V  G  L  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  V  S  V  Y  R  M  H  Q  L  L  P  D  K  L  Q  V  K  K  Y  R  C  N  F  W  D  Q  N  K  S  I  P  F  D  *  R  :  N  P  N  G  R  F  N  R  R  Q  G  E  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  C  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  H  H  V  *  P  C  S  T  R  K :   D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  T  D  D  M  E  V  I  K  T  L  H  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  L  M  A  S  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  V  P  L  Y  F  R  V  P  K  H  *  T  N  N  T  *  F  I  Y  L  S  K  M  K  Y  E  E  L  C  G  I  F  P  F  L  R  N  C  F  S  L  L  N  *  *  C  V  S  I  Y  L  Y  L  M  F  L  D  K  I  I  V  I  F  I  F  Y  V  *  C  S  C  V  T  L  L  I  *  R  Q  K  T  F  F  F  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32885" stop="32986"/>
                    <exon start="33124" stop="33387"/>
                    <exon start="33480" stop="33629"/>
                    <exon start="33697" stop="33833"/>
                    <exon start="33924" stop="34137"/>
                    <exon start="34203" stop="34348"/>
                    <exon start="34428" stop="34656"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1239</number_coding_nucleotides>
                  <number_encoded_amino_acids>413</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLKNLLFSPLRGFIHKDFHQILDKMNLRDKLSFLIVHIIDKHNLWHRVPVFLGLVYLALRRHLNQEYNLINVGRTPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIEELRAPEEVASQCPLKSFKFYKSKETPTGFYEIKTGHLNRRTPWWDGSVIYGSNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWYGLLGKKFKDTFGHVGGAILGGLVGLKKPENHGVPYSLTEEFVSVYRMHQLLPDKLQVKKYRCNFWDQNKSIPFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34922" stop="34938"/>
                    <exon start="35016" stop="35252"/>
                    <exon start="35331" stop="35559"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCSTRKDRERSVARYNEFRRRMLQIPITKWEDLTDDMEVIKTLHEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPVPLYFRVPKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39388" PGL_stop="44297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39388" e_stop="39438"/>
            <exon e_start="40590" e_stop="40835"/>
            <exon e_start="43090" e_stop="43239"/>
            <exon e_start="43340" e_stop="43473"/>
            <exon e_start="43539" e_stop="43752"/>
            <exon e_start="43833" e_stop="43978"/>
            <exon e_start="44070" e_stop="44297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.209" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.890"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39388" e_stop="39438" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.209" acc_prob="0.962">
            <gDNA_intron_boundary i_start="39439" i_stop="40589" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40590" e_stop="40835" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43090" e_stop="43239" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43340" e_stop="43473" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="43539" e_stop="43752" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43753" i_stop="43832" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.890">
            <gDNA_exon_boundary e_start="43833" e_stop="43978" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43979" i_stop="44069" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="44070" e_stop="44297" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39388" stop="39438"/>
              <exon start="40590" stop="40835"/>
              <exon start="43090" stop="43239"/>
              <exon start="43340" stop="43473"/>
              <exon start="43539" stop="43752"/>
              <exon start="43833" stop="43978"/>
              <exon start="44070" stop="44297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTT : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAG : AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG : GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</gDNA_template>
            <first_frame> L  I  I  M  F  G  Q  S  S  S  F  *  A  N  F  W  V  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G  S  R  S  E  V  S  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  A  W  A  G  L  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  T  L  K  :  K  E  Y  P  E  L  K  D  E  E  L  Y  R  H  A  K  R  V  T  A  A  V  I  A  K  I  H  T  I  D  W  T  V  E  L  L  N  T  D  T  L  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  S  I  L  S  G  F  V  G  M  K  K  P  E  D  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  E  L  R  N  I  D  A  T  P  G  L  N  K  S  L  P  L  T  N   </first_frame>
            <second_frame>  S  L  *  C  L  G  N  P  P  P  F  E  L  T  F  G  L :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  A  D  L  K  F  Q  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  G  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  M  L  G  L  D  L  *  L  C  K  R  S  L  Y  K  S  I  I  L  F  V  T  P  *  R :   K  N  I  Q  N  *  K  M  R  S  C  I  V  M  Q  N  V  S  L  L  L  *  L  L  K  F  T  P  *  I  G  Q  L  N  F  S  I  Q  T  P  F  *  Q  E  C  A  P  I   : G  M  D  C  *  E  R  N  S  R  I  H  L  V  M  L  E  V  P  F  *  V  V  L  W  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  R  N  L  R  V  S  I  E  C  I  N  S  C  L  I  H  L  S  *  E  I  S  M  P  R  L  D  *  T  N  L  F  L  *  L  M  </second_frame>
            <third_frame>   H  Y  N  V  W  A  I  L  L  L  L  S  *  L  L  G   : Y  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E  Q  I  *  S  F  K  E  S  E  D  I  *  R  R  K  I  E  T  I  R  K  W  A  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  C  L  G  W  T  C  N  S  A  S  A  L  C  T  R  A  *  S  C  L  *  H  L  E   : E  R  I  S  R  I  E  R  *  G  V  V  S  S  C  K  T  C  H  C  C  C  N  C  *  N  S  H  H  R  L  D  S  *  T  S  Q  Y  R  H  P  S  S  R  N  A  R  Q  L  :  V  W  I  V  R  K  E  I  Q  G  Y  I  W  S  C  W  R  F  H  F  K  W  F  C  G  N  E  E  T  *  G  S  W  S  A  L  F  L  N  *  G  I  Y  E  C  L  S  N  A  S  T  P  A  *  Y  T  *  A  K  K  Y  R  C  H  A  W  T  K  Q  I  S  S  F  D  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39424" stop="39438"/>
                    <exon start="40590" stop="40835"/>
                    <exon start="43090" stop="43239"/>
                    <exon start="43340" stop="43473"/>
                    <exon start="43539" stop="43752"/>
                    <exon start="43833" stop="43978"/>
                    <exon start="44070" stop="44295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANFWVMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYGSRSEVSKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNAWAGLVTLQALFVQEHNLVCDTLKKEYPELKDEELYRHAKRVTAAVIAKIHTIDWTVELLNTDTLLAGMRANWYGLLGKKFKDTFGHVGGSILSGFVGMKKPEDHGVPYSLTEEFTSVYRMHQLLPDTLELRNIDATPGLNKSLPLTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39660" e_stop="39816"/>
            <exon e_start="40590" e_stop="40835"/>
            <exon e_start="43090" e_stop="43239"/>
            <exon e_start="43340" e_stop="43473"/>
            <exon e_start="43539" e_stop="43562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.962" e_score="0.860"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.907"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="0.980"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="0.955"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.860">
            <gDNA_exon_boundary e_start="39660" e_stop="39816" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.962">
            <gDNA_intron_boundary i_start="39817" i_stop="40589" i_length="773"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="40590" e_stop="40835" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="43090" e_stop="43239" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="43340" e_stop="43473" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="43539" e_stop="43562" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39660" stop="39816"/>
              <exon start="40590" stop="40835"/>
              <exon start="43090" stop="43239"/>
              <exon start="43340" stop="43473"/>
              <exon start="43539" stop="43562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATG : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAG</gDNA_template>
            <first_frame> L  E  P  T  P  Y  I  F  L  A  C  R  K  L  N  *  Q  H  V  F  C  *  S  F  S  I  S  S  S  L  F  H  S  Q  R  F  S  *  C  C  *  *  N  E  S  S  Q  Q  T  F  V  Y   : D  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E </first_frame>
            <second_frame>  *  N  Q  P  H  I  Y  F  *  L  V  E  N  *  T  N  N  M  S  F  V  N  L  F  L  F  P  L  R  C  F  I  H  K  D  F  H  D  V  V  D  R  M  S  L  L  N  K  L  L  F  M  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G   </second_frame>
            <third_frame>   R  T  N  P  I  Y  I  S  S  L  *  K  I  K  L  T  T  C  L  L  L  I  F  F  Y  F  L  F  V  V  S  F  T  K  I  F  M  M  L  L  I  E  *  V  F  S  T  N  F  C  L  * :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39703" stop="39816"/>
                    <exon start="40590" stop="40835"/>
                    <exon start="43090" stop="43239"/>
                    <exon start="43340" stop="43473"/>
                    <exon start="43539" stop="43560"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMSFVNLFLFPLRCFIHKDFHDVVDRMSLLNKLLFMMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="44382" PGL_stop="45373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44382" e_stop="44578"/>
            <exon e_start="44667" e_stop="44910"/>
            <exon e_start="45014" e_stop="45373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="0.988"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="44382" e_stop="44578" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44579" i_stop="44666" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="44667" e_stop="44910" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44911" i_stop="45013" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="45014" e_stop="45373" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44382" stop="44578"/>
              <exon start="44667" stop="44910"/>
              <exon start="45014" stop="45373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335546" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAG : AAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</gDNA_template>
            <first_frame> D  G  R  S  N  W  G  *  R  K  *  E  S  I  K  N  W  V  Y  *  A  N  G  F  N  G  T  S  S  *  W  S  S  *  T  L  E  L  S  D  M  D  E  G  S  Y  C  P  R  R  R  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  R  Q  R  K  E  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  E  *  *  Y  G  S  Y  *  N  T  *  *  S  I  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  G  V  C  Y  L  *  D  C  F  F  H  I  S  N  H  G  I  K  :  K  V  R  G  R  *  I  F  H  E  L  L  Q  *  G  D  I  Y  E  K  R  T  *  M  G  E  Y  N  *  K  L  K  R  C  T  R  S  T  L  S  R  D  D  *  E  M  D  E  L  Q  Q  R  L  F  C  L  E  L  A  S  R  T  T  Q  S  N  S  S  L  L  S  R  S  S  D  I  G  S  K  S  K  *  K  E  V  I  R  V  L  I  S  F  Y  L  Q  M  C  N  K  I  P  C  T  I  L  T  T  C  F  I  Q  *  A  V  L  *  N  Y  F  R </first_frame>
            <second_frame>  M  E  D  L  I  G  G  K  G  N  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  S  D  D  M  E  V  I  K  T  L  N  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  I  M  A  S  R :   R  L  E  A  D  K  F  F  T  S  Y  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  E  K  W  M  N  S  N  S  A  F  S  V  W  N  S  P  P  E  P  H  N  P  I  P  V  Y  F  R  V  P  R  T  *  A  Q  N  Q  N  K  K  K  *  Y  V  C  *  L  V  F  T  C  K  C  V  I  R  F  H  V  L  S  S  L  P  V  S  F  S  E  P  F  Y  E  T  I  S   </second_frame>
            <third_frame>   W  K  I  *  L  G  V  K  E  M  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  D  I  K  L  V  E  L  L  N  F  G  I  I  R  Y  G  *  G  I  L  L  P  K  T  S  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  E  T  E  K  G  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  V  M  I  W  K  L  L  K  H  L  M  K  Y  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  R  G  L  L  S  L  R  L  L  F  S  Y  F  *  S  W  H  Q   : E  G  *  R  Q  I  N  F  S  R  A  I  T  M  R  R  H  I  R  K  K  D  L  N  G  *  I  Q  L  K  A  *  K  M  Y  *  I  D  I  I  Q  R  *  L  R  N  G  *  T  P  T  A  P  F  L  F  G  T  R  L  Q  N  H  T  I  Q  F  Q  S  T  F  A  F  L  G  H  R  L  K  I  K  I  K  R  S  N  T  C  V  D  *  F  L  P  A  N  V  *  *  D  S  M  Y  Y  P  H  Y  L  F  H  S  V  S  R  F  M  K  L  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44383" stop="44578"/>
                    <exon start="44667" stop="44910"/>
                    <exon start="45014" stop="45242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEDLIGGKGNENLSRIGFTKQMVSMGHQASGALELWNYPIWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLSDDMEVIKTLNEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLIMASRRLEADKFFTSYYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTEKWMNSNSAFSVWNSPPEPHNPIPVYFRVPRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48083" PGL_stop="47492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48083" e_stop="47768"/>
            <exon e_start="47678" e_stop="47492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.693" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="48083" e_stop="47768" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="47767" i_stop="47679" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47678" e_stop="47492" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48083" stop="47768"/>
              <exon start="47678" stop="47492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG : TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</gDNA_template>
            <first_frame> *  P  S  P  T  L  E  K  L  T  H  S  S  L  K  V  E  Q  A  P  H  F  S  L  F  L  S  S  P  C  V  N  V  Y  Q  M  K  M  N  F  H  N  Y  N  L  F  K  E  D  K  F  R  S  P  G  F  L  L  I  Y  S  L  F  L  T  V  I  F  S  C  Y  M  L  H  F  S  F  S  P  N  V  N  F  I  T  K  Q  D  S  A  P  P  T  K  S  S  H  V  T  N  H  S  Q  P  A   : V  H  N  N  I  T  S  D  C  D  L  L  N  G  N  W  V  L  E  E  K  G  N  Y  S  L  Y  Y  T  N  F  S  C  P  T  I  P  H  S  K  N  C  L  L  N  G  R  A  D  E  G  F  M  Q  W  R  W  K  P  E  E  C   </first_frame>
            <second_frame>  N  H  H  L  L  *  K  N  *  P  I  L  H  L  K  *  N  K  H  H  I  S  L  C  F  S  L  L  L  V  L  M  Y  I  K  *  R  *  I  F  T  I  I  I  Y  L  K  R  I  S  F  V  A  Q  V  S  Y  *  S  I  H  S  F  *  P  *  F  S  A  A  T  C  F  I  F  P  S  A  Q  T  L  T  S  *  P  N  K  I  Q  L  L  L  L  N  P  H  T  L  Q  I  T  L  N  L  Q  :  F  T  T  T  L  H  P  I  V  T  C  *  M  V  I  G  F  *  R  R  R  V  I  I  L  C  I  I  Q  T  L  A  V  Q  Q  F  R  I  Q  K  T  V  C  *  T  E  G  Q  M  K  D  L  C  S  G  D  G  N  Q  K  N  V  </second_frame>
            <third_frame>   T  I  T  Y  S  R  K  I  N  P  F  F  T  *  S  R  T  S  T  T  F  L  S  V  S  L  F  S  L  C  *  C  I  S  N  E  D  E  F  S  Q  L  *  S  I  *  R  G  *  V  S  *  P  R  F  L  I  D  L  F  T  L  S  N  R  D  F  Q  L  L  H  A  S  F  F  L  Q  P  K  R  *  L  H  N  Q  T  R  F  S  S  S  Y  *  I  L  T  R  Y  K  S  L  S  T  C  S :   S  Q  Q  H  Y  I  R  L  *  L  V  E  W  *  L  G  F  R  G  E  G  *  L  F  S  V  L  Y  K  L  *  L  S  N  N  S  A  F  K  K  L  F  V  E  R  K  G  R  *  R  I  Y  A  V  E  M  E  T  R  R  M  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48080" stop="47768"/>
                    <exon start="47678" stop="47494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPTLEKLTHSSLKVEQAPHFSLFLSSPCVNVYQMKMNFHNYNLFKEDKFRSPGFLLIYSLFLTVIFSCYMLHFSFSPNVNFITKQDSAPPTKSSHVTNHSQPAVHNNITSDCDLLNGNWVLEEKGNYSLYYTNFSCPTIPHSKNCLLNGRADEGFMQWRWKPEEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="68583" PGL_stop="71851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68583" e_stop="68812"/>
            <exon e_start="69355" e_stop="69390"/>
            <exon e_start="70010" e_stop="70211"/>
            <exon e_start="71224" e_stop="71302"/>
            <exon e_start="71393" e_stop="71510"/>
            <exon e_start="71661" e_stop="71851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.865" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68583" e_stop="68812" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69355" e_stop="69390" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="70211" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71224" e_stop="71302" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71393" e_stop="71510" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.944" acc_prob="0.865">
            <gDNA_intron_boundary i_start="71511" i_stop="71660" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71661" e_stop="71851" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68583" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71510"/>
              <exon start="71661" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT : GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M :   D  S  H  M  T  I  A  *  T  P  L  C  I  Q  S  A  D  K  F  F  S  S  E  G  *  K  W  F  W  N  V  K  K  G  Y  Q  F  *  *  S  M  K  F  N  C  K  *  E  I  L  V  K  L  I  I  I  H  S  L  V  H  L  T  </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K   : W  I  V  T  *  P  L  H  E  R  L  Y  V  Y  N  L  L  T  S  S  F  Q  V  K  V  E  S  G  F  G  M  *  K  K  G  I  N  F  S  D  Q  *  N  S  T  V  N  R  R  Y  L  *  S  S  L  S  F  I  H  L  C  I  *  H </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  :  G  *  S  H  D  H  C  M  N  A  F  M  Y  T  I  C  *  Q  V  L  F  K  *  R  L  K  V  V  L  E  C  E  K  R  V  S  I  L  V  I  N  E  I  Q  L  *  I  G  D  T  C  E  A  H  Y  H  S  F  T  C  A  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68583" stop="68812"/>
                    <exon start="69355" stop="69390"/>
                    <exon start="70010" stop="70211"/>
                    <exon start="71224" stop="71302"/>
                    <exon start="71393" stop="71510"/>
                    <exon start="71661" stop="71685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKMDSHMTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="72916" PGL_stop="74287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72916" e_stop="73641"/>
            <exon e_start="74114" e_stop="74287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.218" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72916" e_stop="73641" e_length="726"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.218">
            <gDNA_intron_boundary i_start="73642" i_stop="74113" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74114" e_stop="74287" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72916" stop="73641"/>
              <exon start="74114" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG : AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</gDNA_template>
            <first_frame> S  S  S  T  P  M  L  L  P  F  C  N  F  H  P  I  N  P  S  K  T  L  L  K  P  S  P  S  H  S  L  F  S  S  T  P  S  L  S  P  K  P  F  F  P  R  D  S  L  P  V  F  A  A  S  P  D  T  E  A  L  P  E  S  A  I  R  R  I  A  D  K  L  R  S  L  G  F  V  E  Q  P  K  N  Q  E  T  Q  E  N  A  L  S  S  N  P  T  A  N  S  P  G  Q  I  F  V  P  L  P  T  Q  L  P  K  Y  R  V  G  H  T  L  D  T  S  W  S  T  P  E  N  P  V  P  Q  P  G  L  G  K  S  I  Q  K  F  H  E  L  R  D  E  F  L  K  E  K  D  K  E  R  L  K  N  K  E  Y  K  K  E  R  A  P  S  L  A  E  L  T  L  P  A  E  E  L  R  R  L  R  T  V  G  I  A  L  R  K  K  L  K  I  G  K  A  G  I  T  E  G  I  V  N  G  I  H  E  R  W  R  R  I  E  L  V  K  I  T  C  E  D  I  C  R  L  N  M  K  R  T  H  E  L  L  E  :  K  K  T  G  G  L  V  I  W  R  S  G  S  N  I  I  L  Y  R  G  A  D  Y  K  Y  P  Y  F  S  E  N  S  F  E  N  N  S  A  Q  D  A  N  P  D  L  F  M  G  A  E  E  H  M  T  N  S  S  G </first_frame>
            <second_frame>  L  P  Q  H  Q  C  C  F  L  S  A  T  S  I  P  *  T  L  L  K  P  S  *  N  P  H  H  H  I  P  S  S  L  V  H  P  L  F  L  Q  N  P  S  F  L  V  I  P  F  L  F  S  P  H  P  L  I  L  K  L  Y  R  N  P  P  S  E  E  S  P  T  S  Y  A  V  L  D  L  L  N  N  P  R  I  K  K  P  K  K  M  L  *  V  L  I  P  L  Q  T  H  P  V  K  F  S  F  L  C  L  P  N  Y  P  S  T  A  W  V  T  R  L  T  P  V  G  V  R  L  K  T  Q  Y  R  S  L  V  *  G  N  L  Y  R  S  F  M  N  *  G  M  S  S  *  R  R  R  T  R  R  G  *  R  I  R  S  I  R  K  R  E  R  L  V  W  R  S  L  L  C  Q  L  R  N  *  G  G  *  G  Q  L  G  L  R  S  G  K  S  *  R  L  E  R  L  G  L  L  R  G  L  *  M  V  F  M  K  D  G  G  V  S  S  L  L  K  L  R  A  R  T  Y  V  G  *  I  *  R  G  L  M  S  C  *  R :   R  K  L  E  V  L  L  Y  G  D  L  E  V  I  *  F  C  I  E  E  L  I  T  S  I  L  I  S  L  R  I  A  S  R  I  T  V  H  K  M  L  T  L  T  C  S  W  V  R  K  S  T  *  L  T  H  L   </second_frame>
            <third_frame>   F  L  N  T  N  V  A  S  F  L  Q  L  P  S  H  K  P  F  *  N  P  L  K  T  L  T  I  T  F  P  L  L  *  Y  T  L  S  F  S  K  T  L  L  S  S  *  F  P  S  C  F  R  R  I  P  *  Y  *  S  F  T  G  I  R  H  P  K  N  R  R  Q  A  T  Q  S  W  I  C  *  T  T  Q  E  S  R  N  P  R  K  C  F  E  F  *  S  H  C  K  L  T  R  S  N  F  R  S  F  A  Y  P  I  T  Q  V  P  R  G  S  H  A  *  H  Q  L  E  Y  A  *  K  P  S  T  A  A  W  F  R  E  I  Y  T  E  V  S  *  I  E  G  *  V  L  E  G  E  G  Q  G  E  V  E  E  *  G  V  *  E  R  E  S  A  *  F  G  G  A  Y  F  A  S  *  G  I  E  E  A  E  D  S  W  D  C  A  Q  E  K  V  K  D  W  K  G  W  D  Y  *  G  D  C  E  W  Y  S  *  K  M  E  A  Y  R  A  C  *  N  Y  V  R  G  H  M  *  V  E  Y  E  E  D  S  *  V  V  R   : E  E  N  W  R  S  C  Y  M  E  I  W  K  *  Y  N  F  V  *  R  S  *  L  Q  V  S  L  F  L  *  E  *  L  R  E  *  Q  C  T  R  C  *  P  *  L  V  H  G  C  G  R  A  H  D  *  L  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72916" stop="73641"/>
                    <exon start="74114" stop="74287"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSTPMLLPFCNFHPINPSKTLLKPSPSHSLFSSTPSLSPKPFFPRDSLPVFAASPDTEALPESAIRRIADKLRSLGFVEQPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENPVPQPGLGKSIQKFHELRDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYFSENSFENNSAQDANPDLFMGAEEHMTNSSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75647" PGL_stop="80174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75647" e_stop="75878"/>
            <exon e_start="77117" e_stop="77176"/>
            <exon e_start="77279" e_stop="77404"/>
            <exon e_start="78139" e_stop="78408"/>
            <exon e_start="78506" e_stop="78737"/>
            <exon e_start="79154" e_stop="79284"/>
            <exon e_start="79372" e_stop="80174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.071" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75647" e_stop="75878" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="75879" i_stop="77116" i_length="1238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77117" e_stop="77176" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="77177" i_stop="77278" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77279" e_stop="77404" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.983">
            <gDNA_intron_boundary i_start="77405" i_stop="78138" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78139" e_stop="78408" e_length="270"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.071">
            <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78506" e_stop="78737" e_length="232"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.910">
            <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79154" e_stop="79284" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.722" acc_prob="0.578">
            <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="79372" e_stop="80174" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75647" stop="75878"/>
              <exon start="77117" stop="77176"/>
              <exon start="77279" stop="77404"/>
              <exon start="78139" stop="78408"/>
              <exon start="78506" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="80174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG : TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG : GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG : GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG : GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG : GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG : CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGGCCCGTTTGGACATAA</gDNA_template>
            <first_frame> I  G  E  G  N  N  G  E  E  K  H  *  R  G  P  P  N  S  *  D  V  R  G  R  E  W  G  N  T  S  C  C  *  A  S  *  *  G  L  C  D  H  C  I  P  R  K  E  L  R  K  A  C  F  I  E  A  S  D  S  S  K  *  K  R  S  N  E  A  L  Y  R  G  S  A  T  S   : V  I  E  I  T  C  L  K  A  Y  T  K  Y  R  G  F  A  V  T  V   : G  Q  E  *  G  D  K  S  Y  S  V  P  G  Y  S  *  *  A  G  T  R  D  G  H  I  R  C  C  R  W  N  *  L  P  V  Y  C  S  K  S  Y  *   : G  F  W  R  C  C  R  R  H  *  P  Q  F  S  E  R  I  I  K  *  F  L  G  H  R  P  R  F  A  A  R  I  S  N  *  S  V  F  P  I  *  G  Q  G  *  G  Y  G  *  Y  N  S  T  S  A  S  I  Y  F  I  N  Q  R  V  E  K  Y  V  Q  C  E  C  G  S  R  N  I  R  Q  C  S  E  *  I  C  F  *  V  F  Q   : G  R  S  *  D  P  L  F  *  D  Q  K  F  Q  Q  T  S  G  S  *  Q  *  N  G  G  V  S  T  S  S  C  K  T  S  T  N  T  *  I  H  P  E  *  V  R  R  D  V  Y  Q  K  S  T  A  F  Q  Q  G  E  A  A  S  Q  K  T  S  P  Q  D  E  E  A  T  S  A  C  C  W :   E  E  Q  Y  C  Y  W  S  C  K  K  Y  Q  R  T  L  *  E  V  S  S  C  D  C  E  C  Q  R  K  G  K  R  D  F  S  *  G  G  G  F  *  A  G   : A  S  Y  R  C  C  S  C  F  S  R  A  K  Q  S  H  I  V  *  R  L  G  T  R  W  R  A  W  C  F  *  W  K  *  H  Q  *  F  E  K  Q  Q  R  A  K  G  T  N  V  N  I  S  *  T  Y  I  S  N  Q  T  *  M  W  L  A  V  Q  Q  *  Y  G  S  C  F  I  G  N  N  L  G  K  R  E  V  T  S  W  F  F  *  V  Q  S  L  E  L  S  S  N  N  A  F  V  H  P  M  M  V  S  E  L  S  V  H  A  S  N  N  C  F  L  G  V  E  L  E  S  K  L  C  I  T  S  P  I  Q  M  K  G  N  R  L  P  P  N  F  S  P  C  R  I  S  V  A  G  I  S  S  T  *  *  F  L  S  H  G  H  C  A  S  T  G  E  I  L  Y  V  S  *  V  A  L  L  I  Y  I  L  C  K  *  K  F  Q  F  K  N  T  H  L  L  P  C  H  L  F  N  F  P  *  K  Q  K  R  L  M  H  I  A  H  V  P  L  D  Y  I  L  V  L  D  *  L  C  S  *  Q  N  K  Y  V  N  I  *  I  H  Q  K  S  N  I  *  H  C  L  Y  D  I  L  F  N  Q  H  *  G  P  V  W  T  * </first_frame>
            <second_frame>  L  V  K  V  I  T  G  R  K  N  I  E  E  V  H  Q  I  A  R  M  L  E  A  E  S  G  G  I  L  V  A  V  E  R  V  N  K  G  Y  A  I  I  V  Y  R  G  K  N  Y  E  R  P  A  S  L  R  P  Q  T  L  L  S  K  R  E  A  M  K  R  S  I  E  A  Q  R  R  Q  :  S  L  K  L  H  V  L  K  L  T  Q  N  I  E  A  L  Q  S  R  L  :  A  K  N  E  E  I  S  H  I  Q  S  P  D  I  V  D  R  Q  V  P  V  M  G  I  S  D  A  A  G  G  T  N  Y  Q  S  I  V  A  S  P  I  E  :  D  S  G  D  A  A  E  D  T  D  P  S  S  Q  K  E  L  S  N  D  F  S  D  T  D  H  D  S  Q  Q  E  F  P  I  N  P  F  F  Q  Y  E  G  K  V  E  A  M  G  D  T  I  Q  P  Q  H  Q  S  I  S  S  I  K  E  S  K  S  M  F  N  V  N  V  D  Q  E  T  F  G  S  A  V  S  E  S  V  S  K  S  S  R  :  G  E  V  K  I  H  F  S  E  T  R  S  F  N  K  P  R  E  V  N  N  K  M  E  V  S  Q  P  P  P  V  K  P  Q  Q  T  L  R  S  T  R  S  R  S  E  G  M  S  T  R  R  V  Q  L  S  N  R  E  R  L  L  L  R  K  Q  A  L  K  M  K  K  Q  P  V  L  A  V   : G  R  S  N  I  V  T  G  V  A  K  N  I  K  E  H  F  K  K  Y  P  L  A  I  V  N  V  K  G  R  A  K  G  T  S  V  R  E  V  V  F  K  L  E  :  Q  A  T  G  A  V  L  V  S  Q  E  P  S  K  V  I  L  Y  R  G  W  G  P  G  G  E  R  G  A  S  N  G  N  D  T  S  N  S  K  N  S  R  E  Q  K  E  L  M  S  I  S  P  E  L  I  S  A  I  R  L  E  C  G  L  Q  S  N  N  D  M  E  V  A  S  *  A  T  T  L  V  K  G  K  L  P  V  G  F  F  R  F  K  A  L  S  S  H  L  T  T  L  L  C  T  R  *  W  S  L  N  C  L  C  M  H  L  T  I  A  F  L  V  W  S  W  N  L  N  C  A  S  P  L  P  Y  K  *  K  G  I  G  F  H  Q  T  S  L  L  A  E  F  Q  *  L  E  *  V  P  H  D  N  S  C  L  M  V  I  V  H  Q  L  E  R  F  C  M  S  V  K  W  R  C  *  F  T  F  Y  V  N  R  S  F  N  S  K  I  R  I  Y  Y  H  V  I  F  L  I  F  P  R  N  K  K  D  *  C  T  L  H  M  F  L  *  I  T  Y  W  F  *  I  S  Y  V  H  D  K  T  S  M  *  T  Y  K  F  T  K  N  L  I  Y  D  I  V  F  M  T  F  F  L  I  N  T  R  G  P  F  G  H   </second_frame>
            <third_frame>   W  *  R  *  *  R  G  G  K  T  L  K  R  S  T  K  *  L  G  C  *  R  Q  R  V  G  E  Y  *  L  L  L  S  E  L  I  R  V  M  R  S  L  Y  T  E  E  R  T  T  K  G  L  L  H  *  G  L  R  L  F  *  V  K  E  K  Q  *  S  A  L  *  R  L  S  D  V  S :   H  *  N  Y  M  S  *  S  L  H  K  I  *  R  L  C  S  H  G  W :   P  R  M  R  R  *  V  I  F  S  P  R  I  *  L  I  G  R  Y  P  *  W  A  Y  Q  M  L  Q  V  E  L  I  T  S  L  L  *  Q  V  L  L  R :   I  L  E  M  L  Q  K  T  L  T  P  V  L  R  K  N  Y  Q  M  I  S  R  T  Q  T  T  I  R  S  K  N  F  Q  L  I  R  F  S  N  M  R  A  R  L  R  L  W  V  I  Q  F  N  L  S  I  N  L  F  H  Q  S  K  S  R  K  V  C  S  M  *  M  W  I  K  K  H  S  A  V  Q  *  V  N  L  F  L  S  L  P  G :   E  K  L  R  S  T  F  L  R  P  E  V  S  T  N  L  G  K  L  T  I  K  W  R  C  L  N  L  L  L  *  N  L  N  K  H  L  D  P  P  G  V  G  P  K  G  C  L  P  E  E  Y  S  F  P  T  G  R  G  C  F  S  E  N  K  P  S  R  *  R  S  N  Q  C  L  L  L  :  G  G  A  I  L  L  L  E  L  Q  K  I  S  K  N  T  L  R  S  I  L  L  R  L  *  M  S  K  E  G  Q  K  G  L  Q  L  G  R  W  F  L  S  W  S :   K  L  Q  V  L  F  L  F  L  K  S  Q  A  K  S  Y  C  I  E  V  G  D  Q  V  E  S  V  V  L  L  M  E  M  T  P  V  I  R  K  T  A  E  S  K  R  N  *  C  Q  Y  L  L  N  L  Y  Q  Q  S  D  L  N  V  A  C  S  P  T  M  I  W  K  L  L  H  R  Q  Q  P  W  *  K  G  S  Y  Q  L  V  F  L  G  S  K  P  *  A  L  I  *  Q  R  F  C  A  P  D  D  G  L  *  I  V  C  A  C  I  *  Q  L  L  S  W  C  G  V  G  I  *  I  V  H  H  L  S  H  T  N  E  R  E  S  A  S  T  K  L  L  S  L  Q  N  F  S  S  W  N  K  F  H  M  I  I  P  V  S  W  S  L  C  I  N  W  R  D  S  V  C  Q  L  S  G  A  A  N  L  H  F  M  *  I  E  V  S  I  Q  K  Y  A  S  I  T  M  S  S  F  *  F  S  L  E  T  K  K  T  D  A  H  C  T  C  S  F  R  L  H  T  G  F  R  L  V  M  F  M  T  K  Q  V  C  K  H  I  N  S  P  K  I  *  Y  M  T  L  S  L  *  H  S  F  *  S  T  L  G  A  R  L  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75648" stop="75878"/>
                    <exon start="77117" stop="77176"/>
                    <exon start="77279" stop="77404"/>
                    <exon start="78139" stop="78408"/>
                    <exon start="78506" stop="78737"/>
                    <exon start="79154" stop="79284"/>
                    <exon start="79372" stop="79596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1272</number_coding_nucleotides>
                  <number_encoded_amino_acids>424</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVKVITGRKNIEEVHQIARMLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQSRLAKNEEISHIQSPDIVDRQVPVMGISDAAGGTNYQSIVASPIEDSGDAAEDTDPSSQKELSNDFSDTDHDSQQEFPINPFFQYEGKVEAMGDTIQPQHQSISSIKESKSMFNVNVDQETFGSAVSESVSKSSRGEVKIHFSETRSFNKPREVNNKMEVSQPPPVKPQQTLRSTRSRSEGMSTRRVQLSNRERLLLRKQALKMKKQPVLAVGRSNIVTGVAKNIKEHFKKYPLAIVNVKGRAKGTSVREVVFKLEQATGAVLVSQEPSKVILYRGWGPGGERGASNGNDTSNSKNSREQKELMSISPELISAIRLECGLQSNNDMEVAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79641" stop="79850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQSLELSSNNAFVHPMMVSELSVHASNNCFLGVELESKLCITSPIQMKGNRLPPNFSPCRISVAGISST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="85024" PGL_stop="81128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85024" e_stop="84922"/>
            <exon e_start="83833" e_stop="82358"/>
            <exon e_start="81407" e_stop="81128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.424" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="85024" e_stop="84922" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="83833" e_stop="82358" e_length="1476"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.424">
            <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81407" e_stop="81128" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85024" stop="84922"/>
              <exon start="83833" stop="82358"/>
              <exon start="81407" stop="81128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG : GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG : TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</gDNA_template>
            <first_frame> F  F  L  F  L  *  E  R  E  L  Q  S  H  P  N  L  L  E  N  Q  L  N  F  V  D  *  S  H  F  C  F  N  I  H   : G  T  Y  K  G  P  S  F  S  T  T  N  C  I  S  S  A  F  *  *  K  M  G  P  I  W  *  V  I  *  H  S  G  C  I  N  C  *  H  S  P  T  Y  T  P  T  P  T  S  R  E  D  S  L  W  W  P  *  R  *  G  S  Y  F  H  K  S  L  R  I  A  *  P  L  P  Q  R  C  H  E  A  R  R  L  V  Q  N  K  R  S  C  H  Q  G  F  *  L  D  R  E  *  N  E  E  I  W  S  S  R  T  W  W  C  W  F  S  I  W  S  Q  M  V  L  H  A  K  D  N  R  W  P  S  F  I  S  C  R  Q  C  *  *  K  *  T  W  N  L  *  R  Q  G  N  H  A  A  *  P  T  Q  V  V  G  R  L  S  D  C  R  S  G  D  E  S  *  S  C  L  Y  L  Y  Q  G  R  V  C  E  *  K  V  E  P  S  E  G  *  T  R  S  L  *  S  W  I  V  G  E  K  C  L  W  I  W  L  *  F  *  R  I  Y  S  F  W  C  W  C  L  Y  L  W  *  R  D  S  S  S  G  E  P  *  G  Q  T  R  Q  T  K  I  E  A  S  I  S  S  *  C  R  T  I  W  M  S  N  N  C  Y  K  C  *  N  S  S  C  F  T  N  H  L  K  A  W  S  R  V  V  C  *  F  W  P  E  E  *  C  R  D  K  A  V  L  H  L  R  P  C  *  Q  A  L  Y  S  *  R  G  N  E  Y  F  I  E  G  A  A  R  E  A  L  W  W  C  A  W  R  M  G  Q  F  A  C  C  Y  T  R  R  F  I  C  S  T  A  S  Q  E  H  M  *  G  C  T  Y  G  F  *  C  T  Q  S  C  A  V  R  V  G  N  C  C  C  N  C  H  G  Q  V  N  *  C  C  R  C  N  C  K  A  L  V  L  L  Q  A  R  E  L  W  S  M  Y  T  M  *  G  R  H  R  M  A  L  D  D  H  G  K  N  E  G  W  Q  C  K  V  G  R  D  *  H  A  P  R  G  D  K  T  D  *  R  A  H  Y  L  C  L  G  *  R  C  C  L  A  S  T  G  S  Y  *  A  L  *  D  P  E  L  E  R  R  I  S  G  A  C  R  E  G  A  T  T  G  S  C  C  L  I  L  L  *   : V  C  C  L  I  P  W  E  *  I  L  R  S  T  R  S  M  N  V  G  G  E  S  R  T  Q  S  F  P  I  S  S  H  F  L  L  S  N  L  C  R  T  I  V  T  L  L  A  Q  W  V  I  Y  V  S  E  L  V  H  L  M  S  *  C  F  L  T  L  S  L  P  W  F  W  *  L  K  D  A  L  I  F  V  M  L  R  *  I  R  S  T  L  W   </first_frame>
            <second_frame>  F  S  Y  F  Y  E  K  E  S  F  N  L  T  L  I  C  W  R  I  S  *  I  S  S  I  N  H  I  S  A  S  I  F  M  :  A  P  I  K  G  L  L  S  L  Q  R  T  A  L  A  Q  R  S  S  E  R  W  G  Q  Y  G  R  L  F  S  T  Q  A  A  S  T  A  S  T  P  Q  P  T  P  P  P  P  P  P  E  R  T  H  F  G  G  L  K  D  E  D  R  I  F  T  N  L  Y  G  L  H  D  P  Y  L  K  G  A  M  K  R  G  D  W  Y  R  T  K  D  L  V  I  K  G  S  D  W  I  V  N  E  M  K  K  S  G  L  R  G  R  G  G  A  G  F  P  S  G  L  K  W  S  F  M  P  K  T  T  D  G  R  P  S  Y  L  V  V  N  A  D  E  S  E  P  G  T  C  K  D  R  E  I  M  R  H  D  P  H  K  L  L  E  G  C  L  I  A  G  V  G  M  R  A  R  A  A  Y  I  Y  I  R  G  E  Y  V  N  E  R  L  S  L  Q  K  A  R  Q  E  A  Y  E  A  G  L  L  G  K  N  A  C  G  S  G  Y  D  F  D  V  Y  I  H  F  G  A  G  A  Y  I  C  G  E  E  T  A  L  L  E  S  L  E  G  K  Q  G  K  P  R  L  K  P  P  F  P  A  N  A  G  L  Y  G  C  P  T  T  V  T  N  V  E  T  V  A  V  S  P  T  I  L  R  R  G  P  E  W  F  A  S  F  G  R  K  N  N  A  G  T  K  L  F  C  I  S  G  H  V  N  K  P  C  T  V  E  E  E  M  S  I  S  L  K  E  L  L  E  R  H  C  G  G  V  R  G  G  W  D  N  L  L  A  V  I  P  G  G  S  S  V  P  L  L  P  K  N  I  C  E  D  V  L  M  D  F  D  A  L  K  A  V  Q  S  G  L  G  T  A  A  V  I  V  M  D  K  S  T  D  V  V  D  A  I  A  R  L  S  Y  F  Y  K  H  E  S  C  G  Q  C  T  P  C  R  E  G  T  G  W  L  W  M  I  M  E  R  M  K  V  G  N  A  K  L  E  E  I  D  M  L  Q  E  V  T  K  Q  I  E  G  H  T  I  C  A  L  G  D  A  A  A  W  P  V  Q  G  L  I  R  H  F  R  T  Q  S  *  K  G  G  S  V  E  H  A  E  R  E  L  Q  Q  A  A  A  A  *  F  F  Y  E  :  F  A  V  *  Y  H  G  N  K  F  *  E  V  P  E  V  *  M  W  E  G  K  A  G  R  R  A  S  L  Y  P  A  T  F  Y  Y  Q  T  C  V  E  L  L  L  H  C  W  P  N  G  *  F  M  F  Q  S  W  Y  I  *  C  L  N  V  S  L  H  Y  H  C  H  G  F  G  S  *  K  M  L  *  Y  L  S  C  C  V  K  *  D  L  H  F  G  </second_frame>
            <third_frame>   F  L  I  F  M  R  K  R  A  S  I  S  P  *  S  A  G  E  S  A  E  F  R  R  L  I  T  F  L  L  Q  Y  S  W :   H  L  *  R  A  F  F  L  Y  N  E  L  H  *  L  S  V  L  V  K  D  G  A  N  M  V  G  Y  L  A  L  R  L  H  Q  L  L  A  L  P  N  L  H  P  H  P  H  L  P  R  G  L  T  L  V  A  L  K  M  R  I  V  F  S  Q  I  S  T  D  C  M  T  L  T  S  K  V  P  *  S  E  E  I  G  T  E  Q  K  I  L  S  S  R  V  L  T  G  S  *  M  K  *  R  N  L  V  F  E  D  V  V  V  L  V  F  H  L  V  S  N  G  P  S  C  Q  R  Q  Q  M  A  V  L  H  I  L  S  S  M  L  M  K  V  N  L  E  P  V  K  T  G  K  S  C  G  M  T  H  T  S  C  W  K  A  V  *  L  Q  E  W  G  *  E  L  E  L  L  I  F  I  S  G  E  S  M  *  M  K  G  *  A  F  R  R  L  D  K  K  P  M  K  L  D  C  W  G  K  M  L  V  D  L  V  M  I  L  T  Y  I  F  I  L  V  L  V  P  I  F  V  V  K  R  Q  L  F  W  R  A  L  R  A  N  K  A  N  Q  D  *  S  L  H  F  Q  L  M  Q  D  Y  M  D  V  Q  Q  L  L  Q  M  L  K  Q  *  L  F  H  Q  P  S  *  G  V  V  Q  S  G  L  L  V  L  A  G  R  I  M  P  G  Q  S  C  F  A  S  Q  A  M  L  T  S  P  V  Q  L  K  R  K  *  V  F  H  *  R  S  C  *  R  G  T  V  V  V  C  V  E  D  G  T  I  C  L  L  L  Y  Q  E  V  H  L  F  H  C  F  P  R  T  Y  V  R  M  Y  L  W  I  L  M  H  S  K  L  C  S  Q  G  W  E  L  L  L  *  L  S  W  T  S  Q  L  M  L  *  M  Q  L  Q  G  S  R  T  S  T  S  T  R  V  V  V  N  V  H  H  V  G  K  A  Q  D  G  F  G  *  S  W  K  E  *  R  L  A  M  Q  S  W  K  R  L  T  C  S  K  R  *  Q  N  R  L  K  G  T  L  F  V  P  W  V  T  L  L  L  G  Q  Y  R  V  L  L  G  T  L  G  P  R  A  R  K  E  D  Q  W  S  M  Q  R  G  S  Y  N  R  Q  L  L  L  D  S  F  M  S :   L  L  F  D  T  M  G  I  N  F  E  K  Y  Q  K  Y  E  C  G  R  G  K  Q  D  A  E  L  P  Y  I  Q  P  L  F  I  I  K  L  V  *  N  Y  C  Y  I  V  G  P  M  G  N  L  C  F  R  A  G  T  S  N  V  L  M  F  P  Y  I  I  I  A  M  V  L  V  V  E  R  C  F  N  I  C  H  V  A  L  N  K  I  Y  T  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84960" stop="84922"/>
                    <exon start="83833" stop="82427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1443</number_coding_nucleotides>
                  <number_encoded_amino_acids>481</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSINHISASIFMAPIKGLLSLQRTALAQRSSERWGQYGRLFSTQAASTASTPQPTPPPPPPERTHFGGLKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSISLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRTQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="88670" PGL_stop="94102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88670" e_stop="88990"/>
            <exon e_start="89561" e_stop="89673"/>
            <exon e_start="92533" e_stop="92582"/>
            <exon e_start="92713" e_stop="92784"/>
            <exon e_start="93434" e_stop="93494"/>
            <exon e_start="93705" e_stop="94102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88670" e_stop="88990" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89561" e_stop="89673" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.718">
            <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92533" e_stop="92582" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92713" e_stop="92784" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.854">
            <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93434" e_stop="93494" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93705" e_stop="94102" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88670" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA : TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG : GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG : GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG : GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG : ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</gDNA_template>
            <first_frame> P  F  I  N  L  F  *  L  *  F  F  F  R  Y  *  V  K  R  K  G  E  N  G  *  *  Y  I  N  I  N  A  V  R  K  R  F  F  P  F  R  S  C  G  G  *  Q  N  H  I  F  D  S  I  G  K  S  E  Q  K  T  R  Q  R  S  N  N  Y  R  N  P  P  *  E  L  F  K  L  P  P  P  T  A  L  A  L  E  F  H  L  L  L  L  V  L  S  L  L  L  L  I  A  A  S  P  *  P  K  :  W  S  H  Q  R  N  L  L  K  S  *  G  N  S  R  S  S  M  L  A  G  Q  K  H  I  S  A  W  T  K  V  L  L  L  W  S  S  R :   V  W  Q  S  T  R  I  H  W  V  L  H  S  A  P  A   : G  I  M  M  T  K  L  Q  K  R  S  R  A  S  G  I  V  R  V  Y  Q  *  E  R   : G  R  S  V  T  A  C  F  F  *  P  L  I  M  I  L  L  E  K  N  R :   R  L  L  W  R  R  L  R  K  Q  Q  P  T  C  D  A  R  T  S  Y  T  C  Y  E  H  Y  V  F  V  V  H  V  Y  L  S  I  R  *  R  A  T  I  Q  F  *  C  D  M  L  L  K  P  H  P  L  H  C  C  D  S  D  L  V  *  *  D  W  V  G  E  *  Q  C  N  Y  A  N  C  C  V  M  H  L  D  C  M  S  H  N  S  Y  *  G  I  L  G  G  F  S  F  S  *  C  K  S  *  F  C  I  K  L  E  S  I  S  K  S  C  F  V  K  F  N  P  S  R  L  T  C  *  *  *  </first_frame>
            <second_frame>  R  L  L  I  Y  F  N  Y  N  F  S  S  D  I  R  *  K  E  K  E  R  T  D  S  N  I  *  I  S  T  L  Y  E  R  D  F  F  L  S  E  V  V  V  V  N  R  I  T  F  L  T  Q  S  E  S  R  S  R  K  R  D  N  E  A  T  T  T  G  I  R  H  E  N  S  S  S  F  H  L  L  Q  R  W  L  W  N  F  I  F  C  Y  S  S  *  A  F  F  Y  S  S  L  P  H  R  S  Q  N :   G  A  I  R  E  I  C  *  N  H  E  E  I  L  G  A  V  C  S  Q  V  R  N  I  F  L  H  G  Q  R  C  Y  F  C  G  H  Q   : G  F  G  R  A  Q  G  Y  I  G  C  S  T  L  P  L  Q  :  A  L  *  *  Q  S  C  R  S  A  A  G  L  L  E  L  S  V  C  T  N  E  R  E  :  E  G  V  S  L  H  A  F  S  D  P  *  *  *  F  C  W  R  R  T   : D  D  Y  Y  G  G  D  *  G  N  N  S  Q  H  V  M  L  G  H  L  I  H  A  M  N  I  T  F  L  L  Y  M  Y  I  *  V  L  D  E  E  Q  Q  S  S  S  D  V  T  C  C  *  N  P  I  H  Y  I  V  V  I  L  I  S  S  S  E  I  G  W  V  N  N  S  A  I  M  L  T  V  V  *  C  I  *  I  V  *  V  I  T  H  I  R  G  F  W  V  A  S  A  S  A  N  A  N  P  D  F  V  *  N  W  N  Q  F  P  K  A  A  L  *  S  S  I  P  V  V  *  R  V  N  N  E </second_frame>
            <third_frame>   V  Y  *  F  I  L  I  I  I  F  L  Q  I  L  G  E  K  K  R  R  E  R  I  V  I  Y  K  Y  Q  R  C  T  K  E  I  F  S  F  P  K  L  W  W  L  T  E  S  H  F  *  L  N  R  K  V  G  A  E  N  E  T  T  K  Q  Q  L  P  E  S  A  M  R  T  L  Q  A  S  T  S  Y  S  V  G  F  G  I  S  S  F  A  T  R  P  K  P  S  S  T  H  R  C  L  T  V  A  K   : M  E  P  S  E  K  S  V  E  I  M  R  K  F  S  E  Q  Y  A  R  R  S  E  T  Y  F  C  M  D  K  G  V  T  S  V  V  I  K  :  G  L  A  E  H  K  D  T  L  G  A  P  L  C  P  C  R :   H  Y  D  D  K  A  A  E  A  Q  Q  G  F  W  N  C  P  C  V  P  M  R  E  R :   K  E  C  H  C  M  L  F  L  T  P  D  N  D  F  A  G  E  E  Q  :  T  I  T  M  E  E  I  K  E  T  T  A  N  M  *  C  S  D  I  L  Y  M  L  *  T  L  R  F  C  C  T  C  I  F  E  Y  *  M  K  S  N  N  P  V  L  M  *  H  V  A  E  T  P  S  I  T  L  L  *  F  *  S  R  L  V  R  L  G  G  *  I  T  V  Q  L  C  *  L  L  C  D  A  S  R  L  Y  E  S  *  L  I  L  G  D  F  G  W  L  Q  L  Q  L  M  Q  I  L  I  L  Y  K  T  G  I  N  F  Q  K  L  L  C  E  V  Q  S  Q  S  S  D  V  L  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88822" stop="88990"/>
                    <exon start="89561" stop="89673"/>
                    <exon start="92533" stop="92582"/>
                    <exon start="92713" stop="92784"/>
                    <exon start="93434" stop="93494"/>
                    <exon start="93705" stop="93749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRKVGAENETTKQQLPESAMRTLQASTSYSVGFGISSFATRPKPSSTHRCLTVAKMEPSEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTITMEEIKETTANM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90139" e_stop="90865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90139" e_stop="90865" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90139" stop="90865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</gDNA_template>
            <first_frame> F  *  T  L  G  Y  S  L  L  G  Y  K  V  R  I  Y  R  I  C  L  E  T  V  L  S  F  Y  *  L  Q  D  N  G  I  L  Y  T  *  S  L  G  Q  A  A  S  V  *  C  H  F  S  S  K  K  L  L  L  Y  Y  S  C  L  I  I  V  E  *  Y  F  V  A  Q  K  F  Y  F  G  L  I  T  S  *  K  K  K  *  Y  L  W  F  R  A  *  I  A  N  H  F  F  P  G  I  L  H  F  I  F  Q  V  *  V  C  V  R  V  S  S  R  S  I  F  L  C  K  F  V  K  V  *  I  *  N  C  G  A  V  E  T  L  E  L  R  G  Y  Q  L  S  K  T  Y  N  E  R  *  T  I  A  Q  S  *  L  Y  N  K  G  Q  L  Y  K  E  F  L  T  Q  R  R  E  *  E  L  R  N  F  *  *  C  E  Y  K  I  Y  H  L  I  N  K  I  E  E  *  I  L  S  S  H  K  Q  D  R  R  I  D  L  S  Q  V  S  E  N  V  T  V  T  E  L  I  D  C  *  I  Q  A  N  H  K  D  Q  S  N  M  L  S  </first_frame>
            <second_frame>  F  E  R  *  D  T  P  S  *  A  I  K  *  E  F  I  V  S  A  W  K  L  Y  C  R  F  T  N  S  K  I  M  A  F  C  I  L  E  V  *  D  K  L  Q  V  C  D  V  I  S  V  P  K  S  C  F  Y  T  I  A  A  *  L  L  L  N  S  I  L  L  L  R  S  S  T  L  V  L  L  P  H  K  K  K  S  D  T  F  G  L  E  L  E  *  P  I  T  F  S  Q  V  S  F  T  L  Y  F  R  F  R  C  V  F  V  Y  L  L  E  A  Y  F  Y  V  S  S  *  K  Y  E  F  K  I  V  E  L  W  K  L  L  N  *  G  D  I  N  Y  Q  R  L  I  M  R  D  K  Q  *  H  K  A  N  Y  I  I  K  D  S  Y  T  R  N  F  *  H  K  E  G  N  K  N  *  E  T  F  N  N  V  S  T  R  F  T  I  S  *  T  R  *  K  N  R  F  Y  H  L  I  N  K  I  E  E  *  I  Y  L  K  F  Q  R  M  *  L  *  R  S  *  *  I  A  K  Y  K  P  I  T  K  I  N  P  T  C  C  P </second_frame>
            <third_frame>   L  N  V  R  I  L  P  P  R  L  *  S  E  N  L  S  Y  L  L  G  N  C  I  V  V  L  L  T  P  R  *  W  H  S  V  Y  L  K  F  R  T  S  C  K  C  V  M  S  F  Q  F  Q  K  V  A  S  I  L  *  L  L  D  Y  C  *  I  V  F  C  C  S  E  V  L  L  W  S  Y  Y  L  I  K  K  K  V  I  P  L  V  *  S  L  N  S  Q  S  L  F  P  R  Y  P  S  L  Y  I  S  G  L  G  V  C  S  C  I  F  *  K  H  I  S  M  *  V  R  E  S  M  N  L  K  L  W  S  C  G  N  S  *  T  E  G  I  S  I  I  K  D  L  *  *  E  I  N  N  S  T  K  L  I  I  *  *  R  T  V  I  Q  G  I  F  N  T  K  K  G  I  R  I  E  K  L  L  I  M  *  V  Q  D  L  P  S  H  K  Q  D  R  R  I  D  F  I  I  S  *  T  R  *  K  N  R  F  I  S  S  F  R  E  C  D  C  D  G  V  N  R  L  L  N  T  S  Q  S  Q  R  S  I  Q  H  A  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001M12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="95997" PGL_stop="99959"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95997" e_stop="96041"/>
            <exon e_start="96137" e_stop="96213"/>
            <exon e_start="96312" e_stop="96442"/>
            <exon e_start="96599" e_stop="96648"/>
            <exon e_start="96769" e_stop="97271"/>
            <exon e_start="98095" e_stop="98175"/>
            <exon e_start="99312" e_stop="99374"/>
            <exon e_start="99615" e_stop="99959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95997" e_stop="96041" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96137" e_stop="96213" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96312" e_stop="96442" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.874">
            <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96599" e_stop="96648" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96769" e_stop="97271" e_length="503"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98095" e_stop="98175" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99312" e_stop="99374" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="99615" e_stop="99959" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95997" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96442"/>
              <exon start="96599" stop="96648"/>
              <exon start="96769" stop="97193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96034" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96442"/>
              <exon start="96599" stop="96648"/>
              <exon start="96769" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG : TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> L  A  R  *  V  L  E  Y  R  H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N   : V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  L  L  A  E  F  W  S  I  D  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  :  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   C  S  L  S  F  G  V  *  T  Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R :   V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96160" stop="96213"/>
                    <exon start="96312" stop="96442"/>
                    <exon start="96599" stop="96648"/>
                    <exon start="96769" stop="97271"/>
                    <exon start="98095" stop="98175"/>
                    <exon start="99312" stop="99374"/>
                    <exon start="99615" stop="99659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSQMSRPQVTITLGRSGQKVVKRSSASQGNGFSQQTLSRGKRSLGETYRTDSEDPTKSLRKRVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96024" e_stop="96041"/>
            <exon e_start="96137" e_stop="96213"/>
            <exon e_start="96312" e_stop="96648"/>
            <exon e_start="96769" e_stop="97138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96024" e_stop="96041" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96137" e_stop="96213" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96312" e_stop="96648" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96769" e_stop="97138" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96024" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96648"/>
              <exon start="96769" stop="97138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</gDNA_template>
            <first_frame> H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N  G  K  I  F  C  L  L  F  W  L  S  *  C  R  L  Y  L  I  Y  C  F  Q  N  N  G  R  N  I  K  K  L  S  K  L  E  W  *  F  *  F  Y  L  I  V  E  V  L  L  L  F  L  Q  V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  </first_frame>
            <second_frame>  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  V  K  S  F  V  C  C  S  G  *  A  N  V  G  C  I  *  F  I  V  F  R  I  M  E  G  I  *  K  N  Y  Q  S  *  S  G  S  F  D  F  I  *  *  W  K  F  C  Y  C  F  C  K  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G </second_frame>
            <third_frame>   Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R  *  N  L  L  F  V  V  L  V  E  L  M  *  V  V  S  N  L  L  F  S  E  *  W  K  E  Y  K  K  T  I  K  V  R  V  V  V  L  I  L  F  D  S  G  S  F  A  I  V  F  A  S  V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96513" stop="96648"/>
                    <exon start="96769" stop="97136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKEYKKTIKVRVVVLILFDSGSFAIVFASVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="106001" PGL_stop="106967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106001" e_stop="106967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="106001" e_stop="106967" e_length="967"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106001" stop="106967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</gDNA_template>
            <first_frame> E  D  V  H  F  C  S  S  P  Q  Q  A  Q  S  *  I  F  E  T  F  C  F  H  S  Y  L  N  L  K  D  *  I  L  K  L  L  F  F  F  L  H  *  N  G  Y  *  Q  A  K  M  E  N  F  I  S  Q  V  S  I  K  T  T  S  Y  S  Y  R  I  C  L  S  Y  F  W  F  S  H  G  *  P  C  N  R  F  F  R  P  Y  F  *  A  S  L  C  S  C  L  Q  I  T  F  F  Y  P  C  S  S  *  W  L  C  S  *  F  L  Y  C  D  P  *  L  S  S  Q  V  Y  N  P  Q  F  L  P  F  F  F  S  *  P  T  K  T  H  Q  F  S  H  S  *  K  S  R  F  H  I  E  G  H  P  K  T  P  R  C  Y  K  I  *  W  R  P  G  Y  A  D  G  N  *  T  E  P  G  T  E  S  H  I  N  E  F  R  G  I  C  D  S  *  K  W  T  H  L  L  L  F  V  V  S  L  *  L  *  N  P  K  P  K  F  L  *  R  R  *  T  T  C  E  I  E  E  F  P  N  I  *  T  R  R  S  C  H  L  V  S  K  I  D  P  N  P  *  R  N  P  V  P  V  M  H  S  A  Y  T  F  S  S  T  C  T  H  H  F  K  V  C  F  C  T  S  K  F  S  S  G  I  G  K  F  V  V  R  E  S  K  Q  G  E  N  F  T  V  W  N  C  S  V  F  D  *  R  V  E  K  W  I  P  R  I  T  G  T  C  C  </first_frame>
            <second_frame>  K  M  Y  T  F  A  H  L  L  N  R  L  K  V  E  F  L  K  P  F  V  F  I  H  I  *  T  S  K  I  E  S  *  N  F  F  F  F  F  F  I  E  M  G  T  S  K  Q  R  W  R  I  S  F  H  K  S  P  S  K  Q  P  P  I  P  I  E  F  V  C  P  I  S  G  S  L  M  A  D  P  V  I  V  S  S  G  H  T  F  E  R  H  C  V  H  A  C  K  S  L  S  F  T  P  V  L  P  D  G  S  V  P  D  F  S  T  V  I  P  N  L  A  L  K  S  T  I  L  N  F  C  R  S  S  F  L  D  P  P  K  P  I  N  F  L  T  A  E  N  L  V  F  T  L  K  A  T  R  K  P  Q  D  A  T  R  F  N  G  V  R  V  M  Q  T  E  T  E  L  N  R  V  P  S  H  I  S  M  S  S  E  E  S  V  T  P  R  S  G  P  T  Y  Y  S  S  S  S  A  S  D  F  E  T  L  N  P  N  S  F  E  E  D  E  L  L  V  K  L  K  S  S  Q  I  S  E  Q  E  E  A  V  I  S  F  R  K  L  T  R  T  R  E  E  T  R  F  Q  L  C  T  P  R  I  L  S  A  L  R  V  L  I  T  S  R  Y  V  S  V  Q  V  N  S  V  A  A  L  V  N  L  S  L  E  N  R  N  K  V  K  I  L  R  S  G  I  V  P  S  L  I  D  V  L  K  S  G  F  Q  E  S  Q  E  H  V  A </second_frame>
            <third_frame>   R  C  T  L  L  L  I  S  S  T  G  S  K  L  N  F  *  N  L  L  F  S  F  I  F  E  P  Q  R  L  N  L  E  T  S  F  F  F  S  S  L  K  W  V  L  A  S  K  D  G  E  F  H  F  T  S  L  H  Q  N  N  L  L  F  L  *  N  L  S  V  L  F  L  V  L  S  W  L  T  L  *  S  F  L  Q  A  I  L  L  S  V  I  V  F  M  P  A  N  H  F  L  L  P  L  F  F  L  M  A  L  F  L  I  S  L  L  *  S  L  T  *  L  S  S  L  Q  S  S  I  F  A  V  L  L  F  L  T  H  Q  N  P  S  I  F  S  Q  L  K  I  S  F  S  H  *  R  P  P  E  N  P  K  M  L  Q  D  L  M  A  S  G  L  C  R  R  K  L  N  *  T  G  Y  R  V  T  Y  Q  *  V  Q  R  N  L  *  L  L  E  V  D  P  L  I  T  L  R  R  Q  P  L  T  L  K  P  *  T  Q  I  P  L  K  K  M  N  Y  L  *  N  *  R  V  P  K  Y  L  N  K  K  K  L  S  S  R  F  E  N  *  P  E  P  V  K  K  P  G  S  S  Y  A  L  R  V  Y  F  Q  L  Y  V  Y  S  S  L  Q  G  M  F  L  Y  K  *  I  Q  *  R  H  W  *  I  C  R  *  R  I  E  T  R  *  K  F  Y  G  L  E  L  F  R  L  *  L  T  C  *  K  V  D  S  K  N  H  R  N  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106101" stop="106967"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFFFFFIEMGTSKQRWRISFHKSPSKQPPIPIEFVCPISGSLMADPVIVSSGHTFERHCVHACKSLSFTPVLPDGSVPDFSTVIPNLALKSTILNFCRSSFLDPPKPINFLTAENLVFTLKATRKPQDATRFNGVRVMQTETELNRVPSHISMSSEESVTPRSGPTYYSSSSASDFETLNPNSFEEDELLVKLKSSQISEQEEAVISFRKLTRTREETRFQLCTPRILSALRVLITSRYVSVQVNSVAALVNLSLENRNKVKILRSGIVPSLIDVLKSGFQESQEHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="106974" PGL_stop="108131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106974" e_stop="108131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="106974" e_stop="108131" e_length="1158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106974" stop="108131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTGTCTCCTAATACTCTTCAAGCAATGCTATTTTCACTTTCTTGTGTGCCTGAGGCTTATTCTATGCACTGTTCGTGGCTTCCACAAGCCGCTGTCTAGTAATTTGGTATTTATGCTGGAGTTGATTGATTGCTGCAACTGCGGAAGTTGTTAGAGAATTGTTATTCTCATGTTTCTTTAAGGTCTGCATTGCAATAAACATTGCTGCAGAGCAAATGCAATGAACTCCAGAGTTGTTTTTCATTTTTGAGCATCTTGATGCTCAAACAGTGAAAGCAAGAATGAAGAGAGTGTACCATTGACACAATCT</gDNA_template>
            <first_frame> L  F  S  L  A  L  D  D  Q  N  K  T  A  I  G  V  L  G  A  L  P  P  L  L  H  A  L  R  S  E  S  E  R  T  R  H  D  S  A  L  A  L  Y  H  L  T  L  V  Q  S  N  R  A  K  L  V  K  L  G  A  V  Q  A  L  L  G  M  V  K  T  G  H  M  M  G  R  I  L  L  I  L  C  N  L  A  A  S  S  E  G  R  A  A  M  L  D  G  G  A  V  E  C  F  V  C  M  L  R  K  G  E  F  E  S  E  S  T  R  E  N  C  L  A  A  L  Y  G  L  S  H  G  G  L  R  F  K  G  L  A  K  E  A  A  A  E  E  L  L  I  Q  V  E  E  M  G  S  E  R  A  K  D  K  V  R  K  I  L  E  V  L  R  Q  K  D  E  E  E  E  V  D  W  E  K  L  L  N  S  D  D  D  I  S  Q  A  R  I  S  S  S  *  L  L  F  V  S  V  S  S  L  Y  A  I  S  F  L  F  L  R  N  G  L  *  L  G  T  V  F  S  L  H  S  F  G  *  H  D  F  G  F  G  F  A  R  R  V  F  *  G  H  V  T  V  D  M  V  N  N  V  G  G  V  K  K  D  S  E  Q  C  V  L  V  F  G  E  K  R  L  S  L  T  *  T  H  C  L  L  I  L  F  K  Q  C  Y  F  H  F  L  V  C  L  R  L  I  L  C  T  V  R  G  F  H  K  P  L  S  S  N  L  V  F  M  L  E  L  I  D  C  C  N  C  G  S  C  *  R  I  V  I  L  M  F  L  *  G  L  H  C  N  K  H  C  C  R  A  N  A  M  N  S  R  V  V  F  H  F  *  A  S  *  C  S  N  S  E  S  K  N  E  E  S  V  P  L  T  Q  S </first_frame>
            <second_frame>  F  S  V  *  R  *  M  I  R  T  K  L  Q  L  G  Y  *  E  L  C  L  H  F  F  M  P  F  D  L  N  R  N  E  L  G  M  I  R  L  W  L  Y  I  T  S  L  *  F  R  V  T  G  L  N  W  *  N  S  G  R  F  R  H  Y  *  A  W  L  K  R  V  I  *  W  V  G  F  C  *  Y  F  V  T  W  L  R  A  L  K  G  E  Q  Q  C  L  M  G  V  Q  W  S  V  L  Y  V  C  *  E  R  E  S  L  N  R  S  R  L  V  R  I  V  L  L  H  Y  M  D  L  V  M  V  A  L  G  L  K  G  W  Q  K  R  L  L  R  R  S  C  *  Y  K  L  R  K  W  E  V  K  G  P  R  I  K  L  E  R  Y  W  R  F  *  G  R  R  M  K  R  R  K  L  I  G  R  S  C  L  I  R  M  M  I  S  V  K  H  G  *  V  L  H  S  S  C  L  F  L  F  L  H  C  M  L  F  H  S  F  F  *  E  M  A  C  N  *  A  R  F  S  L  C  I  A  S  D  S  M  I  L  V  L  V  L  L  V  V  S  S  E  V  M  *  Q  L  T  W  *  I  M  L  E  V  *  R  K  I  L  N  S  V  F  *  F  L  E  K  R  G  C  L  *  H  E  L  I  V  S  *  Y  S  S  S  N  A  I  F  T  F  L  C  A  *  G  L  F  Y  A  L  F  V  A  S  T  S  R  C  L  V  I  W  Y  L  C  W  S  *  L  I  A  A  T  A  E  V  V  R  E  L  L  F  S  C  F  F  K  V  C  I  A  I  N  I  A  A  E  Q  M  Q  *  T  P  E  L  F  F  I  F  E  H  L  D  A  Q  T  V  K  A  R  M  K  R  V  Y  H  *  H  N   </second_frame>
            <third_frame>   F  Q  F  S  V  R  *  S  E  Q  N  C  N  W  G  I  R  S  S  A  S  T  S  S  C  P  S  I  *  I  G  T  N  *  A  *  F  G  S  G  S  I  S  P  H  F  S  S  E  *  Q  G  *  I  G  E  T  R  G  G  S  G  I  T  R  H  G  *  N  G  S  Y  D  G  S  D  S  V  D  T  L  *  P  G  C  E  L  *  R  E  S  S  N  A  *  W  G  C  S  G  V  F  C  M  Y  V  E  K  G  R  V  *  I  G  V  D  S  *  E  L  S  C  C  I  I  W  T  *  S  W  W  P  *  V  *  R  V  G  K  R  G  C  C  G  G  A  V  D  T  S  *  G  N  G  K  *  K  G  Q  G  *  S  *  K  D  I  G  G  F  E  A  E  G  *  R  G  G  S  *  L  G  E  V  A  *  F  G  *  *  Y  Q  S  S  T  D  K  F  F  I  A  L  V  C  F  C  F  F  T  V  C  Y  F  I  P  F  S  E  K  W  L  V  I  R  H  G  F  L  F  A  *  L  R  I  A  *  F  W  F  W  F  C  S  S  C  L  L  R  S  C  D  S  *  H  G  K  *  C  W  R  C  K  E  R  F  *  T  V  C  F  S  F  W  R  K  E  A  V  F  N  M  N  S  L  S  P  N  T  L  Q  A  M  L  F  S  L  S  C  V  P  E  A  Y  S  M  H  C  S  W  L  P  Q  A  A  V  *  *  F  G  I  Y  A  G  V  D  *  L  L  Q  L  R  K  L  L  E  N  C  Y  S  H  V  S  L  R  S  A  L  Q  *  T  L  L  Q  S  K  C  N  E  L  Q  S  C  F  S  F  L  S  I  L  M  L  K  Q  *  K  Q  E  *  R  E  C  T  I  D  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106974" stop="107573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLALDDQNKTAIGVLGALPPLLHALRSESERTRHDSALALYHLTLVQSNRAKLVKLGAVQALLGMVKTGHMMGRILLILCNLAASSEGRAAMLDGGAVECFVCMLRKGEFESESTRENCLAALYGLSHGGLRFKGLAKEAAAEELLIQVEEMGSERAKDKVRKILEVLRQKDEEEEVDWEKLLNSDDDISQARISSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="110507" PGL_stop="109084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110507" e_stop="109084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="110507" e_stop="109084" e_length="1424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110507" stop="109084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</gDNA_template>
            <first_frame> L  N  K  K  *  K  H  I  S  L  N  E  E  K  *  E  I  *  R  P  H  *  S  P  P  A  I  S  H  P  P  F  T  Y  F  P  L  L  F  L  A  I  F  F  Y  *  L  S  L  L  K  H  *  A  E  K  Q  S  K  W  V  *  L  F  C  F  F  F  A  S  L  L  S  *  L  L  L  Y  H  S  T  I  R  R  *  I  L  L  I  T  G  D  H  V  Q  D  L  N  K  L  C  K  K  P  L  Q  T  N  R  S  L  H  L  L  P  P  P  L  P  S  V  S  S  S  T  T  A  S  S  A  A  A  T  R  P  S  S  S  P  P  L  L  S  T  K  L  N  V  T  Q  K  S  T  Y  H  S  P  A  M  G  S  M  *  S  Y  A  P  K  R  R  L  N  L  L  A  P  A  L  S  L  A  P  T  F  S  P  S  L  P  G  I  S  L  F  K  P  E  A  R  F  I  Q  L  I  W  A  V  K  I  L  L  L  L  K  L  R  W  L  K  E  I  C  P  D  P  Q  C  R  W  I  K  S  Y  K  F  S  G  Q  E  G  F  R  Y  R  K  W  *  R  Y  P  V  L  T  Q  L  G  F  P  I  V  K  S  S  A  Q  I  F  T  I  T  T  K  L  P  N  M  I  L  L  T  I  P  D  L  L  K  L  *  E  M  L  V  I  I  S  R  K  I  Q  H  C  P  F  S  T  T  S  *  L  R  I  S  L  T  T  C  I  T  R  T  Y  P  R  V  W  V  C  C  L  R  T  G  V  C  F  Q  I  R  G  Q  E  F  M  L  K  S  I  L  E  I  K  M  H  S  L  R  R  L  L  Q  Q  C  R  S  *  V  I  M  V  L  K  L  G  E  V  V  R  S  D  T  D  V  M  L  S  T  I  K  L  F  E  G  Y  *  L  C  Y  C  T  F  E  F  F  V  E  F  N  H  S  Q  D  E  S  K  T  Y  N  M  Y  T  M  F  F  T  I  I  F  I  K  I  T  R  L  C  F  S  S  A  F  R  T  T  T  T  T  T  T  C  D  *  C  V  L  R  C  R  *  E  A  V  C  S  S  N  L  I  Q  *  E  M  K  P  *  I   </first_frame>
            <second_frame>  *  I  K  N  K  N  I  Y  H  *  M  K  R  S  E  K  Y  E  D  P  I  E  A  L  Q  L  F  P  I  P  H  L  P  I  S  L  S  F  F  *  P  F  F  S  I  N  F  P  F  S  N  T  E  L  K  N  R  A  N  G  F  N  S  S  A  F  S  L  L  L  C  Y  L  N  S  F  F  I  T  A  P  F  A  A  K  Y  C  L  L  P  E  I  M  S  K  I  *  T  N  Y  A  R  N  H  Y  K  Q  T  D  H  F  T  Y  Y  R  R  R  Y  P  P  S  L  L  P  R  L  L  R  R  R  L  R  R  V  H  P  R  L  L  H  S  F  Q  Q  S  *  T  *  R  R  N  Q  P  I  T  P  R  R  W  V  R  C  S  R  T  R  Q  N  G  A  *  T  C  L  P  R  R  C  L  L  L  R  H  S  R  R  R  C  P  E  S  R  C  S  N  R  R  P  V  L  S  S  *  F  G  P  *  R  F  F  Y  F  *  S  F  V  G  *  R  K  S  A  P  T  H  N  V  D  G  S  N  H  T  N  F  R  V  K  R  V  F  G  T  G  N  G  S  V  I  R  C  S  H  N  W  V  F  P  L  *  R  V  Q  L  K  S  L  Q  L  Q  Q  N  F  P  I  *  S  F  L  Q  S  Q  I  C  S  S  F  E  K  C  L  *  *  F  P  E  R  S  N  I  V  R  F  Q  R  H  H  D  S  E  *  V  *  Q  H  V  L  P  E  L  T  Q  G  F  G  S  V  V  F  G  P  G  S  V  F  R  S  E  D  K  S  S  C  *  R  V  Y  *  R  S  K  C  I  L  *  G  V  C  F  S  N  A  E  A  K  *  S  W  C  *  N  W  E  K  W  *  D  Q  T  Q  M  *  C  F  Q  Q  L  N  Y  L  R  G  I  D  Y  V  T  V  R  S  N  F  L  L  N  L  I  T  H  K  T  K  V  K  L  I  I  C  I  Q  C  F  L  L  S  F  L  L  R  L  Q  G  S  A  S  V  L  L  L  E  Q  L  L  L  L  L  L  V  I  S  V  C  *  D  A  G  K  R  L  F  V  R  R  I  *  F  N  K  K  *  N  R  K  *  </second_frame>
            <third_frame>   K  *  K  I  K  T  Y  I  I  E  *  R  E  V  R  N  M  K  T  P  L  K  P  S  S  Y  F  P  S  P  I  Y  L  F  P  S  P  F  F  S  H  F  F  L  L  T  F  P  S  Q  T  L  S  *  K  T  E  Q  M  G  L  T  L  L  L  F  L  C  F  S  V  I  L  T  P  S  L  S  Q  H  H  S  P  L  N  T  A  Y  Y  R  R  S  C  P  R  F  E  Q  I  M  Q  E  T  T  T  N  K  Q  I  T  S  P  T  T  A  A  A  T  L  R  L  F  F  H  D  C  F  V  G  G  C  D  A  S  I  L  V  S  S  T  P  F  N  K  A  E  R  D  A  E  I  N  L  S  L  P  G  D  G  F  D  V  V  V  R  A  K  T  A  L  E  L  A  C  P  G  V  V  S  C  S  D  I  L  A  V  A  A  R  N  L  V  V  Q  T  G  G  P  F  Y  P  V  N  L  G  R  K  D  S  F  T  S  K  A  S  L  V  E  G  N  L  P  R  P  T  M  S  M  D  Q  I  I  Q  I  F  G  S  R  G  F  S  V  P  E  M  V  A  L  S  G  A  H  T  I  G  F  S  H  C  K  E  F  S  S  N  L  Y  N  Y  N  K  T  S  Q  Y  D  P  S  Y  N  P  R  F  A  Q  A  L  R  N  A  C  N  N  F  Q  K  D  P  T  L  S  V  F  N  D  I  M  T  P  N  K  F  D  N  M  Y  Y  Q  N  L  P  K  G  L  G  L  L  S  S  D  R  G  L  F  S  D  P  R  T  R  V  H  V  E  E  Y  I  R  D  Q  N  A  F  F  K  A  F  A  S  A  M  Q  K  L  S  D  H  G  V  K  I  G  R  S  G  E  I  R  H  R  C  D  A  F  N  N  *  T  I  *  G  V  L  I  M  L  L  Y  V  R  I  F  C  *  I  *  S  L  T  R  R  K  *  N  L  *  Y  V  Y  N  V  F  Y  Y  H  F  Y  *  D  Y  K  A  L  L  Q  F  C  F  *  N  N  Y  Y  Y  Y  Y  L  *  L  V  C  V  E  M  Q  V  R  G  C  L  F  V  E  F  D  S  I  R  N  E  T  V  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110343" stop="109345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEQMGLTLLLFLCFSVILTPSLSQHHSPLNTAYYRRSCPRFEQIMQETTTNKQITSPTTAAATLRLFFHDCFVGGCDASILVSSTPFNKAERDAEINLSLPGDGFDVVVRAKTALELACPGVVSCSDILAVAARNLVVQTGGPFYPVNLGRKDSFTSKASLVEGNLPRPTMSMDQIIQIFGSRGFSVPEMVALSGAHTIGFSHCKEFSSNLYNYNKTSQYDPSYNPRFAQALRNACNNFQKDPTLSVFNDIMTPNKFDNMYYQNLPKGLGLLSSDRGLFSDPRTRVHVEEYIRDQNAFFKAFASAMQKLSDHGVKIGRSGEIRHRCDAFNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109360" stop="109148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFQQLNYLRGIDYVTVRSNFLLNLITHKTKVKLIICIQCFLLSFLLRLQGSASVLLLEQLLLLLLVISVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="121934" PGL_stop="118725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121934" e_stop="121857"/>
            <exon e_start="120846" e_stop="120744"/>
            <exon e_start="120652" e_stop="120484"/>
            <exon e_start="120302" e_stop="120204"/>
            <exon e_start="120105" e_stop="120047"/>
            <exon e_start="119137" e_stop="119032"/>
            <exon e_start="118791" e_stop="118725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.969" e_score="0.942"/>
          <exon-intron don_prob="0.465" acc_prob="0.419" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121934" e_stop="121857" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="121856" i_stop="120847" i_length="1010"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="120846" e_stop="120744" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.969">
            <gDNA_intron_boundary i_start="120743" i_stop="120653" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120652" e_stop="120484" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.465" acc_prob="0.419">
            <gDNA_intron_boundary i_start="120483" i_stop="120303" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120302" e_stop="120204" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.913">
            <gDNA_intron_boundary i_start="120203" i_stop="120106" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120105" e_stop="120047" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120046" i_stop="119138" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="119137" e_stop="119032" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="119031" i_stop="118792" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118791" e_stop="118725" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="121857"/>
              <exon start="120846" stop="120744"/>
              <exon start="120652" stop="120484"/>
              <exon start="120302" stop="120204"/>
              <exon start="120105" stop="120047"/>
              <exon start="119137" stop="119032"/>
              <exon start="118791" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG : GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG : TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT : ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT : CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT : ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG : GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</gDNA_template>
            <first_frame> F  G  F  Q  L  F  I  E  Q  R  S  R  N  Y  *  S  S  T  N  C  *  I  G  P  *  L  :  A  S  R  *  Y  S  H  S  F  Q  L  L  V  S  Y  P  G  *  L  P  F  S  L  A  L  H  L  P  S  C  F  Y  Q  S   : V  M  K  Q  S  S  M  V  L  S  V  L  H  L  *  H  G  Y  W  R  K  M  L  I  S  I  *  A  S  S  D  H  Q  L  Q  S  N  P  W  R  M  I  I  G  V  W  S  Y  P  I  *  G  S  H  *  L  L :   W  S  F  S  I  L  H  S  L  E  L  V  I  L  Q  V  L  Q  V  L  R  S  P  P  C  I  D  S  L  Q  F  S  V :   L  F  *  W  R  H  Y  L  F  S  S  C  *  Y  H  S  Y  L  S   : Y  V  R  S  V  Q  S  Q  N  W  C  K  F  H  C  W  D  A  I  F  W  *  S  C  A  L  M  *  *  Q  S  I  S  S  S  W :   S  E  I  K  E  A  G  W  K  L  A  T  A  L  A  I  S  E  L  *  V  L </first_frame>
            <second_frame>  L  A  F  N  Y  S  *  N  R  E  A  G  I  I  S  P  P  P  T  V  E  L  V  H  S  W :   L  L  D  D  T  P  T  L  F  S  Y  W  S  L  I  Q  A  D  F  H  F  P  W  R  C  T  S  L  P  A  S  I  N  R  :  L  *  S  S  L  L  W  C  S  Q  S  C  T  Y  S  M  D  T  G  G  K  C  L  S  P  Y  K  Q  V  Q  I  I  S  S  S  Q  I  H  G  G  *  *  *  V  S  G  V  I  R  Y  E  D  P  I  N  F   : Y  G  L  F  Q  Y  C  I  L  W  N  W  *  F  C  K  Y  C  K  F  *  D  L  L  R  V  S  I  H  Y  N  F  Q   : S  F  S  D  G  G  I  T  Y  F  Q  A  V  D  T  I  H  T  C  H  :  M  C  V  Q  C  N  H  K  I  G  A  S  S  I  V  G  M  L  F  S  G  D  L  V  L  *  C  N  D  N  P  F  L  L  P   : G  P  K  *  R  K  L  D  G  N  W  Q  Q  H  *  P  F  R  N  Y  E  C   </second_frame>
            <third_frame>   W  L  S  T  I  H  R  T  E  K  Q  E  L  L  V  L  H  Q  L  L  N  W  S  I  A   : G  F  S  M  I  L  P  L  F  S  A  T  G  L  L  S  R  L  T  S  I  F  L  G  V  A  P  P  F  L  L  L  S  I  G :   Y  E  A  V  F  Y  G  A  L  S  L  A  L  I  A  W  I  L  A  E  N  A  Y  L  H  I  S  K  F  R  S  S  A  P  V  K  S  M  E  D  D  N  R  C  L  E  L  S  D  M  R  I  P  L  T  F  :  M  V  F  F  N  I  A  F  F  G  T  G  N  F  A  S  I  A  S  F  E  I  S  S  V  Y  R  F  I  T  I  F  S  :  P  F  L  M  A  A  L  L  I  F  K  L  L  I  P  F  I  L  V  I :   C  A  F  S  A  I  T  K  L  V  Q  V  P  L  L  G  C  Y  F  L  V  I  L  C  S  D  V  M  T  I  H  F  F  F  L  :  V  R  N  K  G  S  W  M  E  I  G  N  S  I  S  H  F  G  I  M  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121932" stop="121857"/>
                    <exon start="120846" stop="120744"/>
                    <exon start="120652" stop="120484"/>
                    <exon start="120302" stop="120204"/>
                    <exon start="120105" stop="120047"/>
                    <exon start="119137" stop="119032"/>
                    <exon start="118791" stop="118726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLSTIHRTEKQELLVLHQLLNWSIAGFSMILPLFSATGLLSRLTSIFLGVAPPFLLLSIGYEAVFYGALSLALIAWILAENAYLHISKFRSSAPVKSMEDDNRCLELSDMRIPLTFMVFFNIAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLLIPFILVICAFSAITKLVQVPLLGCYFLVILCSDVMTIHFFFLVRNKGSWMEIGNSISHFGIMSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="125241" PGL_stop="122772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125241" e_stop="125217"/>
            <exon e_start="125112" e_stop="125038"/>
            <exon e_start="124886" e_stop="124820"/>
            <exon e_start="124438" e_stop="124116"/>
            <exon e_start="122807" e_stop="122772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125241" e_stop="125217" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.966">
            <gDNA_intron_boundary i_start="125216" i_stop="125113" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="125112" e_stop="125038" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="125037" i_stop="124887" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124820" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.854">
            <gDNA_intron_boundary i_start="124819" i_stop="124439" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="124438" e_stop="124116" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124115" i_stop="122808" i_length="1308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122807" e_stop="122772" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125241" stop="125217"/>
              <exon start="125112" stop="125038"/>
              <exon start="124886" stop="124820"/>
              <exon start="124438" stop="124116"/>
              <exon start="122807" stop="122772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCTGACATAGCACCACTGATG : TCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG : GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC : AGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAG : ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</gDNA_template>
            <first_frame> S  S  *  H  S  T  T  D   : V  H  S  S  W  S  A  M  S  Y  Q  L  S  W  Q  S  A  S  S  V  H  E  S  E  Q   : G  R  R  S  *  S  C  A  G  Q  Y  E  A  N  P  Q  S  V  P  S  K  V  T :   V  K  A  V  D  L  I  I  H  Q  A  F  Q  A  L  G  *  L  F  I  T  I  A  *  N  *  A  T  D  F  S  Q  R  V  *  N  C  S  E  I  I  *  T  S  *  E  L  G  T  S  R  T  S  L  F  S  D  I  *  L  A  D  A  D  D  C  N  H  S  W  L  C  W  L  D  D  L  C  H  T  P  Y  L  A  I  L  Y  I  P  T  C  K  Y  F  *  Q  G  P  S  A  *  S  K  K  Y  S  *   : D  T  S  F  R  R  V  V  D  G  S  S  </first_frame>
            <second_frame>  Q  A  D  I  A  P  L  M  :  S  T  L  L  G  L  P  C  P  I  N  S  V  G  N  L  P  L  Q  Y  M  N  L  N  K  :  A  E  E  V  E  A  V  L  A  N  T  K  Q  I  L  N  Q  F  L  R  K  S   : Q  L  K  Q  S  T  S  L  Y  I  K  P  F  K  P  L  A  S  Y  S  S  L  L  R  E  I  E  Q  L  I  S  L  K  E  Y  E  T  A  V  K  L  S  E  H  L  R  S  L  A  L  Q  G  L  H  Y  F  Q  T  Y  D  W  L  M  L  M  T  V  I  T  L  G  Y  V  G  W  M  I  Y  V  I  L  H  I  L  Q  S  Y  T  S  L  P  A  N  I  F  S  K  D  Q  V  P  N  P  R  S  T  V  K  :  I  H  L  L  G  G  L  L  M  G  V  A </second_frame>
            <third_frame>   K  L  T  *  H  H  *  C :   P  L  F  L  V  C  H  V  L  S  T  Q  L  A  I  C  L  F  S  T  *  I  *  T  R :   Q  K  K  L  K  L  C  W  P  I  R  S  K  S  S  I  S  S  F  E  S  H  :  S  *  S  S  R  P  H  Y  T  S  S  L  S  S  P  W  L  V  I  H  H  Y  C  V  K  L  S  N  *  F  L  S  K  S  M  K  L  Q  *  N  Y  L  N  I  L  G  A  W  H  F  K  D  F  T  I  F  R  H  M  I  G  *  C  *  *  L  *  S  L  L  A  M  L  V  G  *  S  M  S  Y  S  I  S  C  N  L  I  H  P  Y  L  Q  I  F  L  A  R  T  K  C  L  I  Q  E  V  Q  L  R :   Y  I  F  *  E  G  C  *  W  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125240" stop="125217"/>
                    <exon start="125112" stop="125038"/>
                    <exon start="124886" stop="124820"/>
                    <exon start="124438" stop="124116"/>
                    <exon start="122807" stop="122772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QADIAPLMSTLLGLPCPINSVGNLPLQYMNLNKAEEVEAVLANTKQILNQFLRKSQLKQSTSLYIKPFKPLASYSSLLREIEQLISLKEYETAVKLSEHLRSLALQGLHYFQTYDWLMLMTVITLGYVGWMIYVILHILQSYTSLPANIFSKDQVPNPRSTVKIHLLGGLLMGVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="139310" PGL_stop="128579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139310" e_stop="139265"/>
            <exon e_start="138974" e_stop="138825"/>
            <exon e_start="138603" e_stop="138445"/>
            <exon e_start="136628" e_stop="136569"/>
            <exon e_start="135972" e_stop="135874"/>
            <exon e_start="134570" e_stop="134463"/>
            <exon e_start="134383" e_stop="134240"/>
            <exon e_start="133061" e_stop="132954"/>
            <exon e_start="132524" e_stop="132473"/>
            <exon e_start="132405" e_stop="132130"/>
            <exon e_start="131908" e_stop="131881"/>
            <exon e_start="130599" e_stop="129623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.935"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.978"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="0.786"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139310" e_stop="139265" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138974" e_stop="138825" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138603" e_stop="138445" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="136628" e_stop="136569" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135972" e_stop="135874" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="135873" i_stop="134571" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="0.935">
            <gDNA_exon_boundary e_start="134570" e_stop="134463" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="134383" e_stop="134240" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="133061" e_stop="132954" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="132524" e_stop="132473" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="0.978">
            <gDNA_exon_boundary e_start="132405" e_stop="132130" e_length="276"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132129" i_stop="131909" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="0.786">
            <gDNA_exon_boundary e_start="131908" e_stop="131881" e_length="28"/>
          </exon>
          <intron i_serial="11" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131880" i_stop="130600" i_length="1281"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="130599" e_stop="129623" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139310" stop="139265"/>
              <exon start="138974" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134570" stop="134463"/>
              <exon start="134383" stop="134240"/>
              <exon start="133061" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132130"/>
              <exon start="131908" stop="131881"/>
              <exon start="130599" stop="130586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130592" stop="129623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACT : CTCAAAAAAAAAATAAAAAAACTACATT : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</gDNA_template>
            <first_frame> L  F  P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L :   S  K  K  K  *  K  N  Y  I  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E  G  K  I   </first_frame>
            <second_frame>  S  S  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H   : S  Q  K  K  N  K  K  T  T  L :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  E  K  *  </second_frame>
            <third_frame>   L  P  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  :  L  K  K  K  I  K  K  L  H   : C  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138923" stop="138825"/>
                    <exon start="138603" stop="138445"/>
                    <exon start="136628" stop="136569"/>
                    <exon start="135972" stop="135874"/>
                    <exon start="134570" stop="134463"/>
                    <exon start="134383" stop="134240"/>
                    <exon start="133061" stop="132954"/>
                    <exon start="132524" stop="132473"/>
                    <exon start="132405" stop="132365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="131695" e_stop="131298"/>
            <exon e_start="130599" e_stop="130546"/>
            <exon e_start="129989" e_stop="129930"/>
            <exon e_start="128972" e_stop="128579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131695" e_stop="131298" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130599" e_stop="130546" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129989" e_stop="129930" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="128972" e_stop="128579" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131695" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG : GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG : TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</gDNA_template>
            <first_frame> V  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R :   I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  S :   *  Q  S  K  R  Q  Y  K  L  Q  G  W  L  Q  V  W  L  K  Q  Y  K  V  Q  A  S  S  C  K  H  *  I  *  A  F  R  M  K  K  I  L  A  K  W  W  L  V  E  F  R  D  M  I  G  *  Y  L  S  R  A  S  *  E  I  S  V  Y  L  Y  A  S  S  F  S  K  P  I  S  V  T  F  L  C  Y  A  V  L  *  S  F  S  S  L  A  Y  V  P  F  R  N  L  *  K  Y  L  *  I  T  N  D  Q  Q  N  H  F  V  Y  L  L  K  Q  V  V  Y  D  W  K  R  Y  F  L  * </first_frame>
            <second_frame>  F  L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R   : G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R   : V  N  K  A  N  D  N  T  S  Y  R  G  G  F  K  F  G  *  N  N  T  R  F  R  L  Q  V  A  N  I  E  S  E  L  S  G  *  R  R  Y  *  L  S  G  G  L  *  N  S  E  T  *  *  A  D  I  F  H  G  H  P  E  R  S  L  F  I  C  M  P  V  V  S  V  S  L  Y  L  *  H  F  C  V  M  Q  F  F  D  L  F  L  P  *  H  M  F  L  S  A  T  Y  K  N  T  C  E  L  L  M  I  S  R  I  I  L  F  T  C  *  N  K  W  Y  T  I  G  K  G  T  S  Y   </second_frame>
            <third_frame>   S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  :  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  :  L  T  K  Q  T  T  I  Q  A  T  G  V  A  S  S  L  V  E  T  I  Q  G  S  G  F  K  L  Q  T  L  N  L  S  F  Q  D  E  E  D  I  S  *  V  V  A  C  R  I  Q  R  H  D  R  L  I  S  F  T  G  I  L  R  D  L  C  L  F  V  C  Q  *  F  Q  *  A  Y  I  C  N  I  F  V  L  C  S  S  L  I  F  F  F  L  S  I  C  S  F  P  Q  L  I  K  I  L  V  N  Y  *  *  S  A  E  S  F  C  L  L  V  E  T  S  G  I  R  L  E  K  V  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131678" stop="131298"/>
                    <exon start="130599" stop="130546"/>
                    <exon start="129989" stop="129930"/>
                    <exon start="128972" stop="128847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEDIEGITGLKIQVVEGIASVELTKQTTIQATGVASSLVETIQGSGFKLQTLNLSFQDEEDIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="135861" e_stop="135404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135861" e_stop="135404" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135861" stop="135404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</gDNA_template>
            <first_frame> F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I   </first_frame>
            <second_frame>  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  </second_frame>
            <third_frame>   L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001M12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 43 chains have been computed
$ 
$ memory statistics:
$ 154448 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 5516 bytes was the average size of a spliced alignment
$ 31224 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1561 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:47:47
-->
