<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:35:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395767" ref_strand="+" ref_description="SGN-E395767 [TUS-17-H8](-)">
      <seq>gggaagcattgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattttagtgatctcgagttgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatttcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccattttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactactgacattttatcattggatatatatatatccatcctttgttctgtacagctattttggaaaaatacttgttttactaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="2111" stop="974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1897" g_stop="1892" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1809" g_stop="1275" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="541" r_length="535" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="555"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E395767" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1897" e_stop="1892"/>
          <exon e_start="1809" e_stop="1275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</genome_strand>
        <mrna_strand>GGGAAG..................................................................................CATTGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTTTAGTGATCTCGAGTTGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATTTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATTTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTTTGGAAAAATACTTGTTTTACTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210342" ref_strand="+" ref_description="SGN-E210342 [cLEC-35-H11]">
      <seq>agaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacagctattctggaaaaatacttgttttactactgacattctatcattggatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="2581" stop="1108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2281" g_stop="2149" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2043" g_stop="1892" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="285" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1809" g_stop="1410" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="685" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E210342" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2281" e_stop="2149"/>
          <exon e_start="2043" e_stop="1892"/>
          <exon e_start="1809" e_stop="1410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATAT</genome_strand>
        <mrna_strand>AGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTCTATCATTGGATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398504" ref_strand="+" ref_description="SGN-E398504 [TUS-17-H8]">
      <seq>cagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctgggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctcttaggagatactctttatttgggaagcatcgttggagcaacggtaattgcaattggattctatacggtaatgtggggaaaggcaaaagagatgtctgaatataatgattctagtgatctcgagtcgtctccagatcaaaagttccccttgttacacaactacaaaaatgaaggcatctcaaacaagtgaaccattagtttgaaagcagaatgggacgtcacacaaaaggcaggaaaaattacaccatcttttatgaaccaaaaacgagtatggggttgtacaggaagaaacaatatgccgttatgggaaaaaaaggagtagcaaaattgttggcatatatatatatatatatccatcctttgttctgtacacctattctggaaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="2582" stop="1146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2282" g_stop="2149" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2043" g_stop="1892" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="286" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1809" g_stop="1446" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="650" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E398504" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2282" e_stop="2149"/>
          <exon e_start="2043" e_stop="1892"/>
          <exon e_start="1809" e_stop="1446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAGGTACAAACTCAAGTGCCCAACTCTGCATTTATTTTCTTTAAGTACAGTAATCTAATTAACCACTTTCTTGTTTGACAATCAGCATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACT</genome_strand>
        <mrna_strand>CAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG..................................................................................CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACACCTATTCTGGAAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215016" ref_strand="+" ref_description="SGN-E215016 [cLEC-78-I3]">
      <seq>tgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaacctgactcaaacaaatggataattaaaccggatatcgcactggcctccatcctctgctctggaatattgggttcatccttaaataatacaattcacacctggggctttgcgcgtgaaaggaccagtatatgtagcaatgtttaaaccattgtccatcgcgattgcagttgccatgggagtcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="4856" stop="1618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4556" g_stop="4497" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="126" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="240" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2500" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="478" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2307" g_stop="2149" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="637" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2043" g_stop="1918" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="764" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E215016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4556" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2500"/>
          <exon e_start="2307" e_stop="2149"/>
          <exon e_start="2043" e_stop="1918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCTGTAAGTGAAAACAAGAAATAAGTTTGATTTCTTTTATATCTTTATACTAAATGTTTTGCTACTTCTGTTCATGTACGATGAAATGATATGCATTGCATCACCCAGGGAATATTGGGTTCATCCTTAAATAATACAATTCACACCT-GGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTC</genome_strand>
        <mrna_strand>TGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT.........................................................................................................GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700389" ref_strand="+" ref_description="SGN-E700389 [FA12DH09]">
      <seq>gttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgctattgtaggatttttatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5137" stop="1909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4837" g_stop="4497" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="406" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="520" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2500" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="758" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2307" g_stop="2209" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="857" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E700389" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4837" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2500"/>
          <exon e_start="2307" e_stop="2209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAA</genome_strand>
        <mrna_strand>GTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATC-G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345769" ref_strand="+" ref_description="SGN-E345769 [cTOF-18-K23]">
      <seq>gaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtcccaatgtggtatatagttcagacatggattatgaaggtgtatccagcagaagtgacggtagttttcttctacaacttaactgttagcatcctagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5035" stop="1931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4735" g_stop="4497" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="305" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2500" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="657" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2307" g_stop="2231" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="734" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E345769" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4735" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2500"/>
          <exon e_start="2307" e_stop="2231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAGGTATGATATTCTTATTTTACTCCTACTCAATTTTTACAACAAGCAAATTACGCCACCTACGTGTCTTATTTACAATTTTCTTTCATATGTATATTCTCGCTTTATTTTGTGACTCCTGATTCATTGTGCGGGCAAGTTTTTTTTTTTACGCAGACTTAGTCCCTGAATAGAGTGTTTTTTTTTTTATGATAGACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGC</genome_strand>
        <mrna_strand>GAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG................................................................................................................................................................................................ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720091" ref_strand="+" ref_description="SGN-E720091 [FC09DB10]">
      <seq>gggcgattggcggccaatcggccgaattgaatttcaatgtaagcctatctgaaaaaaaaacagttactttaatcctggaccataacctatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctgtacaaaggcccaaaaatattagtgcctaccacagccacacccaatttactacgtcaacctctcagctcatctcaatcgaattggatgcttggtggccttttcctcacaactgaatattttttagtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5173" stop="2218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4870" g_stop="4497" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="403" r_length="374" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="469" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="583" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2518" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="803" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E720091" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4870" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCA</genome_strand>
        <mrna_strand>AATTTCAATGTAAGCCTATCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACCTATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269480" ref_strand="+" ref_description="SGN-E269480 [cLEM-2-J11]">
      <seq>aacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5141" stop="2347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4841" g_stop="4497" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="411" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="525" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2647" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="616" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E269480" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4841" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTG</genome_strand>
        <mrna_strand>AACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248557" ref_strand="+" ref_description="SGN-E248557 [cLEF-59-J24]">
      <seq>tcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagatcaaccactcgagccaaagtgttgggcacggtggtgtccatagctggagcattcgtagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5053" stop="2351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4753" g_stop="4497" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="323" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="437" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2651" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="524" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E248557" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4753" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAAC</genome_strand>
        <mrna_strand>TCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAG-CATTCGTAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302910" ref_strand="+" ref_description="SGN-E302910 [cLEW-26-G18]">
      <seq>tggaccataaccatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgccgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaataccctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcaggatggagaagatacagttgaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5124" stop="2413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4824" g_stop="4497" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="396" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="510" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2738" g_stop="2713" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="536" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E302910" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4824" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
          <exon e_start="2738" e_stop="2713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCATAA-CATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACG-CGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAGGTTCTCTTTTATAATCTCATGTCCTAATTTCAGGTCATTTTCTTGTCCCCACTATAATGAAACTAGATTGTTTTTTTTTAATCTCCAATTTTGTCAAGTTGTTGATATCTTTTGTCAGCATCCATCATTTTTTTCCAACCGAAAAAAATAGTTGAAATAAAGGAAAAACTTGACTAAGATTACTGATATCTAAGTTGTAGCATGTAGGCCATTTGATTCATTATTTGAAAACAAAAGGTTGTAGGCCAAAGGCTTGAAAAAATATCGAATCATTTGCATAAATGACCCTTCGAGGCCACTATTATAATTGCATCGATGTTATAAGGTCCCTGGATTAAACTGGTCTGTAAAAGAAAAATTCATCCAACTCTACTGCAAAGGGGCAAAGCTATCTCAATTTGACTAACGGGGACTAAATTTAAAGAGTGACCTCAAAACAGGCCAACGGTATAACTGATTCATTTCACGCTAATTTACAAAAATAAACTCATGTGTGGATTGTATTTAAATGTTCGTCACTTTTCATTATTAGACCTGTGGTGTCAAGTTCAAAAAATGTCTCTCTGGTTTTATGTTTTAGAAGAAGAAATTTGATGAGTGGATCTTTTAAACAGGATGGAGAAGATACAGTTGAAAAGAT</genome_strand>
        <mrna_strand>TGGACCATAACCATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACCCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGAAGATACAGTTGAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334524" ref_strand="+" ref_description="SGN-E334524 [cTOD-23-B8]">
      <seq>taaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatcagcaatctcgtccctgcttttactttcgtcttggctgtcattttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5078" stop="3053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4778" g_stop="4497" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="348" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3353" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="462" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E334524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4778" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG</genome_strand>
        <mrna_strand>TAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212444" ref_strand="+" ref_description="SGN-E212444 [cLEC-74-H10]">
      <seq>ttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatgcctctccaacgcttgcctccgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5155" stop="3100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4855" g_stop="4497" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="425" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3400" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="492" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E212444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4855" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATC</genome_strand>
        <mrna_strand>TTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269575" ref_strand="+" ref_description="SGN-E269575 [cLEM-2-I22]">
      <seq>tagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcattatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5154" stop="3126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4854" g_stop="4497" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="424" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3426" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="465" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E269575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4854" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTATCTATG</genome_strand>
        <mrna_strand>TAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201955" ref_strand="+" ref_description="SGN-E201955 [cLEC-7-A6]">
      <seq>aaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgcttatagatatggacttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataatggggtatacaggcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5144" stop="3132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4844" g_stop="4497" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="414" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3432" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="449" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E201955" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4844" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACAGGCATTA</genome_strand>
        <mrna_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGCTTATAGATATGGACTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAATGGGGTATACAGGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305425" ref_strand="+" ref_description="SGN-E305425 [cLEX-15-G12]">
      <seq>cataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcggctcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatctttcttcttggagttatcgggtgtacatcacagataacggggtataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5119" stop="3139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4819" g_stop="4497" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4335" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="389" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3466" g_stop="3439" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="417" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E305425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4819" e_stop="4497"/>
          <exon e_start="4400" e_stop="4335"/>
          <exon e_start="3466" e_stop="3439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGGGTAATAATTTGACTCTTTTTCTTGTTTTTTTCACTGTAGATATGCTAAAACCCAAAAATTGTTTTTTGTTTTTGAGAAAATTAGGATAATTTGATGTTGTTGGTCTTATAAATGATTAAATCAATTGAATTTGTTGATGAGATGATCCACGTCGAACTAAGATGAGAACATATCTCTTACACTTTTGTAAGGTTCGGACAGTCCTCTGCTTTGAACCAATTTCGGGGTGTAATTTAGGCGGTAAGTCTAATTTGACATAATATCAGAGAGATCTATTTGACCGGACCATGGTCTCTTAGCAATCCTCGTTCAATTGAGCTGACTTTTGGGGTGTTAGTTCGGTCAAAGCCTAATTTGACAGAATTCAATTGTTAAAGTTAGTGCTGAACCAATAAAGAGAGATCAAAAAGTCAACTTCAATAATTTGAGATTAAAGTACAAGTTGATTGATACTTCAATAGTAATTCTATTTCATATACTAAGGCACAATGTCAATAAGAATTCTTGTAAAGTTTTGTCCTTTACTTTTTATTTCATTACTAATATAGATGGGACTGGGCATTTGCGCAAATGACCTCTTTTGAGGGCACCACATATATTCGTTTCACATTAATTCAGTTGGCTAAAAATTTGTCTGTGAAAATGAAAAATGCATCCACTTGCTTTTTAAGGCCATACGGTGCAAATTATTCAGGGTAAAGTGGAAATCCAACAAACACCAGTAACATTTTAGACTATACGCTTTGATGATCATTCACTGGTGTTTTATTCTAGTAAATTTTAACTAAATAGTCCAATAACAAAATATAATTATGTTTTCTTACCTTTTCATAATGTATACTAATATAGTGCATAATTGGAAGTGCAGGTGTACATCACAGATAATGGGGTATACA</genome_strand>
        <mrna_strand>CATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACATCACAGATAACGGGGTATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208766" ref_strand="+" ref_description="SGN-E208766 [cLEC-51-O10]">
      <seq>ttcaatgtaggaccttaggaataaaaaaaaagtgtaaaaaatttcatctttaattttccctataaaacttagctaaaaaaacagttgcttcaatttcaatgtaagcttagctgaaaaaaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagcaataacagagagacaactttttacaaagaagtgctaccatttgcagctatggtgactatggaatgtataaatgttggattaaatacgctttacaaagctgctactaacaaaggcatgagtaatcatgtctttgttgtttatagttatggtcttgcgggtcttctgcttcttccttctcctttcttctccaccagatcaagaattcttccacctctcaattgctcgattcttgccaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5261" stop="4054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4961" g_stop="4497" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4400" g_stop="4354" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="512" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E208766" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4961" e_stop="4497"/>
          <exon e_start="4400" e_stop="4354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAGGTACATGCTCTGTTTTTTTTTTTTGTATTGCATGTTTGTAAAATTTGATCAAGAATCTGATGGGGTATTGAAAAATTGAAACCTATCTAATTGCAGATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCT</genome_strand>
        <mrna_strand>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGGTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG................................................................................................ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294210" ref_strand="+" ref_description="SGN-E294210 [cLET-14-C7]">
      <seq>aaaaacagttactttaatcctggaccataacatatcgtatttattgaacacacacactcgtatgaataaatatcagatttttaggtaaagctcatgtccgccacgcgtagaagttgaagattttgaagaaaaaaacagaggaaaaatgggaagccataacagagagacaactttttacaaagaagtgctaccatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="5144" stop="4347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4844" g_stop="4647" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E294210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4844" e_stop="4647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGC</genome_strand>
        <mrna_strand>AAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCCATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223449" ref_strand="+" ref_description="SGN-E223449 [cLEL-14-I9](-)">
      <seq>tcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="6744" stop="7583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7016" g_stop="7283" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="268" polyA_stop="289"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E223449" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7016" e_stop="7283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNGCAAGGCCTGGACGCTAA-GCTACAGGTTCGTCGTTGCAGCTATACCGGACGTCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTGTGGCCGACATACAATTAATACTTAATGAATTATTACTTTCAGTTGCTT</genome_strand>
        <mrna_strand>TCAAGGGAAGATAGGTGCAAGCACAG-GTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCTAT-CCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745200" ref_strand="+" ref_description="SGN-E745200 [GI|47105846]">
      <seq>ggtaagaaggaagggaaaaagaaaggagtatatgagtcttggaaagtcaggtgagcagaaaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatcaaaggagtagaggtaattacacggttaagtgtaaaggtcatcctcagtaccatcgaggtggagctattgctacccttcagttcaattgccaccttgctcttcttgtgactgtgattacttttgtatactcaattgtgtgtaaaaaacatggcattggccgtgaacatatgcggtatagacctattggagctgagatgcaacacttggaaatcgatagtcaagctcattttacattggagtctgatgaagaggatgacaatgagaatgggataaaagaagagatgaatgttgaaatgcaaaaggctattgtacctgttcctgaatcagaaactaatggctatcatacccatccttgaggaaacccatggttcattttttatgttactgggtataaagatatattctttgcagaggggttatggtttagaggttggggttccctttgtataaagaatttacatatagaaaagagaaagtttcagtctttttgtatttgatgattctagttcaaattgtaatgttgtcttagaaattttctttgaagtgatttaagtatattttcctttattgtgtgtctatggaagacttactctttgatagtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8601" stop="10623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8900" g_stop="10312" g_length="1413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1413" r_length="1413" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1414" polyA_stop="1436"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E745200" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1413</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8900" e_stop="10312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTA</genome_strand>
        <mrna_strand>GGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330521" ref_strand="+" ref_description="SGN-E330521 [cTOD-8-A13]">
      <seq>aagaaaggagtatatgagtcttggaaagtcaggtgagcagagaattgagcctaaataggcaggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8618" stop="9678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8918" g_stop="9378" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E330521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8918" e_stop="9378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTA</genome_strand>
        <mrna_strand>AAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAGAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332260" ref_strand="+" ref_description="SGN-E332260 [cTOD-17-G24]">
      <seq>aggcacagcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattttgttcatttctagaattgaaaaatcccaaatcaaattacactagattaggacgtgggattgggttaatcttgcaagggacgtggactcttcaaatggggtttgcttttttctccgatttgattgcacagggatgctatttacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8678" stop="10010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8978" g_stop="9710" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E332260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8978" e_stop="9710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATC</genome_strand>
        <mrna_strand>AGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268386" ref_strand="+" ref_description="SGN-E268386 [cLEI-13-M14]">
      <seq>agcctggccagatcaacgaagcttctctataacatagaatttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggtattaggtctcatgacccgcttgaaaagttcttttcatttaccttcaccgatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8684" stop="9739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8984" g_stop="9439" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E268386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8984" e_stop="9439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTC</genome_strand>
        <mrna_strand>AGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302822" ref_strand="+" ref_description="SGN-E302822 [cLEY-2-O7]">
      <seq>atttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgaattctcttcttttctttctctattcgggattaggtctcatgacccgcttgaaaagatcttttcatttaccttcaccgatcctcaatttgctttgcctcttcgcttttgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8722" stop="9769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9022" g_stop="9469" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E302822" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9022" e_stop="9469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAG</genome_strand>
        <mrna_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGAATTCTCTTCTTTTCTTTCTCTATTCGGGATTAGGTCTCATGACCCGCTTGAAAAGATCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210373" ref_strand="+" ref_description="SGN-E210373 [cLEC-35-D6]">
      <seq>atttcttgagatctaacgataatcaaagtcaacaatggggctattcagctatactgtcgccggcggcggatttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctctattcggnattaggtctcatgacccgcttgaaaagttcttttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8722" stop="9722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9022" g_stop="9422" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E210373" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9022" e_stop="9422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATT</genome_strand>
        <mrna_strand>ATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGNATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698856" ref_strand="+" ref_description="SGN-E698856 [FA07DC03]">
      <seq>agctatactgtcgccggcggcggacttatactaatcggcgcttgggaatctctggtctcttcttctggtgccctgaaaaattcatcaccgtcgtccactacccaatcgccgccacaaaatccatcgacagataagcatgagcaagattctgttttttcttcatcggtcacctttgtattaatcttaatcctttcgttccttttcgttctcgattccttgttatcctttttcgacgcactcaactccaaagacaacattggttccgtccttcaattgcaggttatcgcgatttctcttcttttctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="8768" stop="9676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9068" g_stop="9376" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E698856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9068" e_stop="9376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTC</genome_strand>
        <mrna_strand>AGCTATACTGTCGCCGGCGGCGGACTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266834" ref_strand="+" ref_description="SGN-E266834 [cLEI-7-L21]">
      <seq>cttttctttctctattcggaattaggactcatgacccgcttgaaaagtacttttcatttaccttcaccgatcctcaatttgcttcgcctcttcgctttggctgaggaatttttgttgttttatcttcaaaggaaagacccaagtggagttgaaaatcgttactataatctcttgcttgtgcctattgctatttgtgcattctgttcatttctaaaatagaaaaatcccaaatcaaatcacactagattaggacgtgggattgggataatcttgcaagggacatggactcttcaaatggggctcgcttttttctccgatttgattgcacaaggatgctattgacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="9065" stop="10013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9365" g_stop="9713" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E266834" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9365" e_stop="9713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAA</genome_strand>
        <mrna_strand>CTTTTCTTTCTCTATTCGGAATTAGGACTCATGACCCGCTTGAAAAGTACTTTTCATTTACCTTCACCGATCCTCAATTTGCTTCGCCTCTTCGCTTTGGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTCTGTTCATTTCTAAAATAGAAAAATCCCAAATCAAATCACACTAGATTAGGACGTGGGATTGGGATAATCTTGCAAGGGACATGGACTCTTCAAATGGGGCTCGCTTTTTTCTCCGATTTGATTGCACAAGGATGCTATTGACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578104" ref_strand="+" ref_description="SGN-E578104 [LE08EB09]">
      <seq>tttttaaggaaaatatacttaaatcacttcaaagaaaatttctaagacaacattacaatttgaactagaatcatcaaatacaaaaagactgaaactttctcttttctatatgtaaattctttatacaaagggaaccccaacctctaaaccataacccctctgcaaagaatatatctttatacccagtaacataaaaaatgaaccatgggtttcctcaaggatgggtatgatagccattagtttctgattcaggaacaggtacaatagccttttgcatttcaacattcatctcttcttttatcccattctcattgtcatcctcttcatcagactccaatgtaaaatgagcttgactatcgatttccaagtgttgcatctcagctccaataggtctataccgcatatgttcacggccaatgccatgttttttacacacaattgagtatacaaaagtaatcacagtcacaagaagagcaaggtggcaattgaactgaagggtagcaatagctccacctcgatggtactgaggatgacctttacacttaaccgtgtaattacctctactcctttgatgtaaatagcatccctgtgcaatcaaatcggagaaaaaagcaaaccccatttgaagagtccacgtcccttgcaagattaacccaatcccacgtcctaatctagtgtaatttgatttgggatttttcaattctagaaatgaacaaaatgcacaaatagcaataggcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="10577" stop="9239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10280" g_stop="9539" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E578104" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10280" e_stop="9539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAACCGTGTAATTACCTCTACTCCTTTGATGTAAATAGCATCCCTGTGCAATCAAATCGGAGAAAAAAGCAAACCCCATTTGAAGAGTCCACGTCCCTTGCAAGATTAACCCAATCCCACGTCCTAATCTAGTGTAATTTGATTTGGGATTTTTCAATTCTAGAAATGAACAAAATGCACAAATAGCAATAGGCACAAG</genome_strand>
        <mrna_strand>TTTTTAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAACCGTGTAATTACCTCTACTCCTTTGATGTAAATAGCATCCCTGTGCAATCAAATCGGAGAAAAAAGCAAACCCCATTTGAAGAGTCCACGTCCCTTGCAAGATTAACCCAATCCCACGTCCTAATCTAGTGTAATTTGATTTGGGATTTTTCAATTCTAGAAATGAACAAAATGCACAAATAGCAATAGGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321942" ref_strand="+" ref_description="SGN-E321942 [cTOB-29-C8]">
      <seq>tttttttgttaagaaagttagtcgtcattactatcaaagagtaagtcttccatagacacacaataaaggaaaatatacttaaatcacttcaaagaaaatttctaagacaacattacaatttgaactagaatcatcaaatacaaaaagactgaaactttctcttttctatatgtaaattctttatacaaagggaaccccaacctctaaaccataacccctctgcaaagaatatatctttatacccagtaacataaaaaatgaaccatgggtttcctcaaggatgggtatgatagccattagtttctgattcaggaacaggtacaatagccttttgcatttcaacattcatctcttcttttatcccattctcattgtcatcctcttcatcagactccaatgtaaaatgagcttgactatcgatttccaagtgttgcatctcagctccaataggtctataccgcatatgttcacggccaatgccatgttttttacacacaattgagtatacaaaagtaatcacagtcacaagaagagcaaggtggcaattgaactgaagggtagcaatagctccacctcgatggtactgaggatgacctttacacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="10637" stop="9435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10340" g_stop="9735" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E321942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10340" e_stop="9735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGTTAAGAAAGTTAGTCGTCATTACTATCAAAGAGTAAGTCTTCCATAGACACACAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAA</genome_strand>
        <mrna_strand>TTTTTTTGTTAAGAAAGTTAGTCGTCATTACTATCAAAGAGTAAGTCTTCCATAGACACACAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540975" ref_strand="-" ref_description="SGN-E540975 [TUS-61-I11]">
      <seq>ttttgacacgtaatgagacaggcatcactgtgatgcagagaatgggaatagggatgtttctttcagtgatagcaatgataattgctgctgttaccgaaagaaaaagactggatatgcccagaaatgtaggtactttaacttcagaattcgaagctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagtaaaaaaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="14939" stop="13706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14639" g_stop="14016" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="650"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E540975" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540975" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14639" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</genome_strand>
        <mrna_strand>TTTTGACACGTAATGAGACAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATGCCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294217" ref_strand="-" ref_description="SGN-E294217 [cLET-14-E21]">
      <seq>ctttgccaatgagcatattttggttgctgcctcagtacatcttattgggaatttcagatatattcacagttgttggtatgcaagagttcttttactctgaagttccgataaatatgagaactttaggcatagctctttatactagtgtatttggttgtggtagtttcttcagctcattccttataacagtgattgaacatttgacaagttcaataggagaaaagcagaactggttcgccgatgacatgagcagagcccgtttagacaactattactggtttctggcattgtcaagtgcagccagttttatgatgtttatggttttctgtcgattttatagaagcaggacagttaattagagtgttggtagtgactgataatttgttattgtggaatgttgtgttttgcacattcatttttctaagtagaaagtgaaggttctgcacttgtatataaaggaagatatatctagtaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="14786" stop="13706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14486" g_stop="14016" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E294217" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294217" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14486" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</genome_strand>
        <mrna_strand>CTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540973" ref_strand="-" ref_description="SGN-E540973 [TUS-61-I11](-)">
      <seq>cccctcgagatagttctctctctctcggttttatacacataacacggatggtgaaattattcatatcaagtccttgggaggtcatatagttaaagctattagagcggctacctcaagattgacctgtggtgagattgcggtaccagataccaacaagtcaaaagttgttgagatcgaacttgaaaatgcaccactctgccaacaagattcaggcagcacggagggtacggataaaaagccggagaatgggatagtagaaattctaaaagtagtactacctctactgccagtatggactatgcttctgatgtttgcagtgatttttcaacaacctgcaacatttttcactaaacaaggtatgacaatgaggagaaacatcggaagcagcttccgaattccaccagctgcacttcagagttcaatcacaatatctataatcctgcttatgcctctttacgacacgtgctttatccccttcattcgtgttttgacacgtaatgagaaaggcatcactgtgatgcagagaatgggaatagggatgtttctttcagtgatagcaatgataattgctgctgttaccgaaagaaaaagactggatattgccagaaatgtaggtactttaacttcagaattcgaagctttgccaatgagcatattttggttgctgcctcagtacatcttattggggatttcagatatattcacagttgttggtatgcaagagttcttttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="15558" stop="14090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15257" g_stop="15108" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="177" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15107" i_stop="14948" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14947" g_stop="14390" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="735" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E540973" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540973" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15257" e_stop="15108"/>
          <exon e_start="14947" e_stop="14390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGAGTAAGTGTTTCTTTAAAGCTTTTGTAAACGAGTTTAAATTCTACGTACTGACAATATAAAATGGTTTCATACAATAGTAAAAAAACTAAAAATGATTACTAACCTGCTACAACATATTGCCAACCAATGCTCATTATGGCTTTGCCTTGCATTTTCTTAGACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTC</genome_strand>
        <mrna_strand>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA................................................................................................................................................................ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGGATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208509" ref_strand="+" ref_description="SGN-E208509 [cLEC-39-E10]">
      <seq>ttacaagtgatattaatttctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20091" stop="21048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20391" g_stop="20535" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20679" g_stop="20748" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="215" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E208509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20391" e_stop="20535"/>
          <exon e_start="20679" e_stop="20748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTG</genome_strand>
        <mrna_strand>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300716" ref_strand="+" ref_description="SGN-E300716 [cLEW-8-G12]">
      <seq>agtgatattaatttctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttgaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaacggcaccaaaagaagttgctaatgaatgcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20096" stop="22289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20396" g_stop="20535" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20679" g_stop="20942" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="404" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21537" g_stop="21686" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="554" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21945" g_stop="21989" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="599" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E300716" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20396" e_stop="20535"/>
          <exon e_start="20679" e_stop="20942"/>
          <exon e_start="21537" e_stop="21686"/>
          <exon e_start="21945" e_stop="21989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</genome_strand>
        <mrna_strand>AGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAACGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265065" ref_strand="+" ref_description="SGN-E265065 [cLEI-2-B11]">
      <seq>tctcgtataaacaatgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20109" stop="22289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20409" g_stop="20535" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20679" g_stop="20942" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="391" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21537" g_stop="21686" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="541" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21945" g_stop="21989" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="586" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E265065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20409" e_stop="20535"/>
          <exon e_start="20679" e_stop="20942"/>
          <exon e_start="21537" e_stop="21686"/>
          <exon e_start="21945" e_stop="21989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</genome_strand>
        <mrna_strand>TCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747485" ref_strand="+" ref_description="SGN-E747485 [GI|37962658]">
      <seq>atgtcttttgttatgctcaagaatctcttgctatcctctctccgtaaattcatccacaaagatttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaattgcaaaagttcacaccatagattggactgttcagcttctgaaaaccgatactatgcttgcaggaatgcgtgccaattggtatggattactaggaaagaagttcaaggatacatttggtcatgttggttccattttaagtggtgttgttggaatgaagaaacctgagaatcatggagtgccttattccttaactgaagaatttacgagtgtttatagaatgcatcaactgttacctgatacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatacaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcataatcctattccactctattttcgtgttcctcagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20122" stop="24303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20422" g_stop="20535" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20679" g_stop="20942" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="378" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21537" g_stop="21686" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="528" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21945" g_stop="22078" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="662" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22188" g_stop="22401" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="876" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22564" g_stop="22709" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1022" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22710" i_stop="22795" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22796" g_stop="23020" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1023" r_stop="1247" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="23109" g_stop="23311" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1450" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="23454" g_stop="23697" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1451" r_stop="1694" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="23778" g_stop="24003" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1695" r_stop="1920" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E747485" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20422" e_stop="20535"/>
          <exon e_start="20679" e_stop="20942"/>
          <exon e_start="21537" e_stop="21686"/>
          <exon e_start="21945" e_stop="22078"/>
          <exon e_start="22188" e_stop="22401"/>
          <exon e_start="22564" e_stop="22709"/>
          <exon e_start="22796" e_stop="23020"/>
          <exon e_start="23109" e_stop="23311"/>
          <exon e_start="23454" e_stop="23697"/>
          <exon e_start="23778" e_stop="24003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTAAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAG</genome_strand>
        <mrna_strand>ATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATACAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204599" ref_strand="+" ref_description="SGN-E204599 [cLEC-14-E17]">
      <seq>tttccatgagatctttgacaaaatgactctcatcgataaattattttttttgattgttcattttattgataaacataacttttggcaccggctaccggtattcttcgggttactttatcttggagcacggcggagtcttcaccagcaatataatttgatcaacgtcggtagaacacctaccggagttcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20184" stop="22563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20484" g_stop="20535" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.012" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20679" g_stop="20942" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="316" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21537" g_stop="21686" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="466" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21945" g_stop="22078" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="600" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22188" g_stop="22263" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="676" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E204599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20484" e_stop="20535"/>
          <exon e_start="20679" e_stop="20942"/>
          <exon e_start="21537" e_stop="21686"/>
          <exon e_start="21945" e_stop="22078"/>
          <exon e_start="22188" e_stop="22263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTGGTAAAAAAGAGTTCAACCTAATGCTTTTATTTTATGTCTTAGACTTAATGCTTTTATTTTATGTCTTAGTCGATCCTGATTCGATATTATTTTTTAGTTTATTGTCTACGTACGTAGGTTCTAATAATGTGAGATGCATGCAGATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAA</genome_strand>
        <mrna_strand>TTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG...............................................................................................................................................ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209676" ref_strand="+" ref_description="SGN-E209676 [cLEC-54-J4]">
      <seq>tcgatcaaatccggcagattacccttacagaactgctgatggaaaattcaatgacccttttaatgaaggaacaggcagtcaattttctttctttggcaggaatatgatgcctcttcatcagaataataagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="20513" stop="22565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20813" g_stop="20942" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21537" g_stop="21686" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="280" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21945" g_stop="22078" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22188" g_stop="22265" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="492" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E209676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20813" e_stop="20942"/>
          <exon e_start="21537" e_stop="21686"/>
          <exon e_start="21945" e_stop="22078"/>
          <exon e_start="22188" e_stop="22265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAGGTACTCCAATTTGATTTTTCTCTATCAATATAATTAGTTAGACGAGATAAAAAAAAATGACCCTCATCAATATATGTTTTATTTTAAGTGTCTAATTAAGAAACAAAGAGAAAATTTTAAATCTTTCATATGGGCTTAAATTAAAAATGTGTACTTCTTCTATAAACTTTTTGCTATTAAAATAAAGAAAATGAATTTATATATGAGGCCCTCGGTAAATCATAAATTGATATGTGTCTAACTTTAACACGAGGGGTCAAACATCGATAAATCATAATTTTATTTTGATTTTACGTAAAAAAAAAAGTCAGCTTCAAATTTAACACTATCCTAAAAGTTTTAGCGCATTAAGTCATACTTGACCTAACAAACTAAAAAGAAAAATAAAACAGTTGAATTAGGATTAGGATGGAAGACTAATTAAATTAAAAAGAAATCTAAAAATTAAGAGAGGTAGGAGATGATAAAGGACAAGTAACTACTATTTTTTTTTAATAGACGGGTTAGCTTTTAGGTAATATAATGACGGCAAATTATTTAAACATATTCTTTTTACTTTTTTTTTCTAATAAAAATAAAATGACACGTGTGCAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATT</genome_strand>
        <mrna_strand>TCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212600" ref_strand="+" ref_description="SGN-E212600 [cLEC-74-H4]">
      <seq>aagttaaaaaagccagatccaatggtagtagcaacgaagcttctagcacgaagaaaattcatagacactggaaaacaattcaatatgatagctgcttcttggatacagtttatggttcatgattggatcgatcatttggaagatactcaacaggttgagctaagggcaccaaaagaagttgctaatgaatgcccactcaagtcctttaggtttaacaaatccaaagaaactcctacagatttttatgaaatcaaaaccggtcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="21235" stop="22931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21534" g_stop="21686" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21945" g_stop="22078" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="287" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22188" g_stop="22401" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="501" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22564" g_stop="22631" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="569" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E212600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21534" e_stop="21686"/>
          <exon e_start="21945" e_stop="22078"/>
          <exon e_start="22188" e_stop="22401"/>
          <exon e_start="22564" e_stop="22631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTAAGCCTACTTTAATTTCATATATATATATATATATATATAGTTTGTGAGAATAAAATAATTGGTAAGCTTACGTATATGTACATAGCTAGTTCACCAATATGAGTGTACATTATTTATACACTTAATATATAGTGTATAATTACGTACTGTGTACATAATTTTATAAACTAGATGTCCCAAAGATATTAGATGGTAATTTTCTCAAAAAATATAATTTGTGACAAACTTTGTTGGTACTATAAATTTTGTGCACAGGTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTAAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAAT</genome_strand>
        <mrna_strand>AAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG..................................................................................................................................................................................................................................................................GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213405" ref_strand="+" ref_description="SGN-E213405 [cLEC-71-I22]">
      <seq>tcacttgaacagccgtactccctggtgggacggaagtgtaatttatggaagtaacgaggatgttttgaagaaagtgagaacatttagagacggaaaactgaaattaggtgaaaatggactcatccaacaagatgaaaatggaaaaattatctctggtgatgttcgtaacacttgggctggacttttaacgcttcaagctctctttgttcaagagcacaatgctgtttgtgacactttgaagaaagaatatccagaattagaggatgaagagttgtatcgtcatgcaaggctagtcacttcagctgtaattgcaaaagttcacaccatagattggactgttcagcttctgaaaaccgatactatgcttgcaggaatgcgtgccaattggtatggattactaggaaagaagttcaaggatacatttggtcatgttggttccattttaagtggtgttgttggaatgaagaaacctgagaatcatggagtgccttattccttaactgaagaatttacgagtgtttatagaatgcatcaactgttacctgatacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatncagctagtggagctcttgagctttggaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="21752" stop="23530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22052" g_stop="22078" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22188" g_stop="22401" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="241" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22564" g_stop="22709" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="387" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22710" i_stop="22795" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22796" g_stop="23020" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="612" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23109" g_stop="23230" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="734" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E213405" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22052" e_stop="22078"/>
          <exon e_start="22188" e_stop="22401"/>
          <exon e_start="22564" e_stop="22709"/>
          <exon e_start="22796" e_stop="23020"/>
          <exon e_start="23109" e_stop="23230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGAACAGCCGTACTCCCTGGTGGTAATATTTCTAAATATTTATCATAAATAATTCATTTACACAAACTAAATTATTATTTGGTCCAAAATAAGTGTTGCTACAGAATAATTATTTTAATTTTCATATGAAGGGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAGGTACGTACGTACTAATTAATCATATTGGAGTCTAACTATTAGCAACACGAAAAATAATAAAGACAGGTTGTTACCAATACACATTGTTTATATTTGAGATAGTGGATGATCTTGAATCTTTTTTTTTTTTTAAAAAAAAAAATTCGATTATCAATATTTCAGAAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTGGTTAGTATTTATCTCTCTATACATATCAATTGTACTATCGTTACGCATGAATAAAATTAAAATTAATTTGTATGATGAATTGACAGGTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATC</genome_strand>
        <mrna_strand>TCACTTGAACAGCCGTACTCCCTGGTG.............................................................................................................GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG..................................................................................................................................................................AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG......................................................................................GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATNCAGCTAGTGGAGCTCTTGAGCTTTGGAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379252" ref_strand="+" ref_description="SGN-E379252 [TUS-3-C4]">
      <seq>tacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagaagtttaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaacagtgccttctctgtttgggattcttctccacacctcataatctattccctctattttcgtgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="22655" stop="24297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22955" g_stop="23020" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23109" g_stop="23311" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="269" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23454" g_stop="23697" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="513" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23778" g_stop="23997" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="729" r_length="216" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E379252" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22955" e_stop="23020"/>
          <exon e_start="23109" e_stop="23311"/>
          <exon e_start="23454" e_stop="23697"/>
          <exon e_start="23778" e_stop="23997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCT</genome_strand>
        <mrna_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAAGTTTAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTC-AACAGTGCCTTCTCTGTTTGGGATTCTTCTCCAC-ACCTCATAAT-CTATTCC-CTCTATTTTCGTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376457" ref_strand="+" ref_description="SGN-E376457 [TUS-17-H9]">
      <seq>tacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcatttatccaaaatgactgataaatggatgaattcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="22655" stop="24229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22955" g_stop="23020" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23109" g_stop="23311" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="269" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23454" g_stop="23697" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="513" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23778" g_stop="23929" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="665" r_length="152" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E376457" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22955" e_stop="23020"/>
          <exon e_start="23109" e_stop="23311"/>
          <exon e_start="23454" e_stop="23697"/>
          <exon e_start="23778" e_stop="23929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCA-TTATCCAGAAATGACTGATAAATGGATGAATTCAAACA</genome_strand>
        <mrna_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTTATCCA-AAATGACTGATAAATGGATGAATTCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210557" ref_strand="+" ref_description="SGN-E210557 [cLEC-35-H12]">
      <seq>tacacttcagctaagaaatatagatgccacgcctgggccaaacaaatctcttcctttaactaatgaaattcccatggaagaagtagttgggagtaaaggaaaagagaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="22655" stop="23852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22955" g_stop="23020" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23109" g_stop="23311" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="269" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23454" g_stop="23552" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="368" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E210557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22955" e_stop="23020"/>
          <exon e_start="23109" e_stop="23311"/>
          <exon e_start="23454" e_stop="23552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGAGTAAGTCCTCATTATATACGCTATTTTAGTATATACTGACAAAATAATAATAATAATTTAATTTCTCATCGCGATACTGAAATTGCAGAATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATG</genome_strand>
        <mrna_strand>TACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA........................................................................................AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379408" ref_strand="+" ref_description="SGN-E379408 [TUS-3-C4](-)">
      <seq>gaatttatcaagaattgggtttactaagcaaatggtttcaatggggcatcaagctagtggagctcttgagctttggaattatccagtgtggatgagagatcttattgcccaagatgttgatggaacagacaggccagatcctattgaccttgcagctcttgaaatttatagggatagagaaagaagtgttcctaggtacaatgactttagaagaggaatgcttcaaattcctatttcgaaatgggaagatttgacagatgatgaagaagcaatcaaaacacttggtgaagtatatgatgatgatatagaagagttggatttattagtgggactcatggcggagaaaaaaattaaaggatttgccatttcagaaacagccttcaacatattccttctcatggctataaggaggttagaggcagatagatttttcacaagcaattacaacgatgagacatacacaaagaaaggattagaatgggtgaatactactgagagtttaaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcataatcctattccactctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaataccgtaatacgtacaagtttgtatttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="22848" stop="24369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23148" g_stop="23311" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23454" g_stop="23697" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="408" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23778" g_stop="24069" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="700" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E379408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23148" e_stop="23311"/>
          <exon e_start="23454" e_stop="23697"/>
          <exon e_start="23778" e_stop="24069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTAAGTTTATTTTCTATTACAATCAGAATATCGAGTTTTACTGTTAATAAATTGGTCCAAAAATGTCTCTGCTATTTAATTGGTTTAACCGTAGTCGTATGAGTATTTTCTTTTTTTATTATTAATTATATTTTGATGGCAGTTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGG</genome_strand>
        <mrna_strand>GAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA..............................................................................................................................................TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG................................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376456" ref_strand="+" ref_description="SGN-E376456 [TUS-17-H9](-)">
      <seq>aaaaaaaaagtgttcctaggtacaatgactttaaaaaaagaaagcttcaaattcctatttcgaaatgggaaaatttgacaaataataaaaaagcaatcaaaacacttggttaagtatatgatgatgatataaaaaagttggatttattagtgggactcatggcggaaaaaaaaattaaaggatttgccatttcaaaaacagccttcaacatattccttttcatggctataaggaggttaaaggcaaataaatttttcccaagcaatttcaacgatgagacatacacaaaaaaaggattagaatgggtgaatactactgaaagtttaaaaaatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttttctgtttgggatttttttccccaacctcataatcctattcccctctattttcgtgttcctcagtagtagacctcaaaatcatgtgtgtaactatttattaataccgtaatacgtacaagtttgtatttaaggtgtcttgttttatttcatcaaaataatatattgtatcttggtctgtgaaaataactattagttagtaattcgtatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="23167" stop="24454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23466" g_stop="23697" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23778" g_stop="24145" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="600" r_length="368" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="631"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E376456" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23466" e_stop="23697"/>
          <exon e_start="23778" e_stop="24145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAGGTTTGTAACTAAAACAATAACATTTTATGCATTACTATTATATTTTTTTTTACACAATCAGATGACTTTCGAATTTACAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</genome_strand>
        <mrna_strand>AAAAAAAAAGTGTTCCTAGGTACAATGACTTTAAAAAAAGAAAGCTTCAAATTCCTATTTCGAAATGGGAAAATTTGACAAATAATAAAAAAGCAATCAAAACACTTGGTTAAGTATATGATGATGATATAAAAAAGTTGGATTTATTAGTGGGACTCATGGCGGAAAAAAAAATTAAAGGATTTGCCATTTCAAAAACAGCCTTCAACATATTCCTTTTCATGGCTATAAG................................................................................GAGGTTAAAGGCAAATAAATTTTTCCCAAGCAATTTCAACGATGAGACATACACAAAAAAAGGATTAGAATGGGTGAATACTACTGAAAGTTTAAAAAATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTTTCTGTTTGGGATTTTTTTCCCCAACCTCATAATCCTATTCCCCTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTTTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302942" ref_strand="+" ref_description="SGN-E302942 [cLEW-26-H11]">
      <seq>gaggattttaattactatcatatatatatatataaagtaggaaacatgactatgattatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="32532" stop="33916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32828" g_stop="32986" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32987" i_stop="33242" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33243" g_stop="33387" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="304" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33480" g_stop="33616" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="441" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E302942" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32828" e_stop="32986"/>
          <exon e_start="33243" e_stop="33387"/>
          <exon e_start="33480" e_stop="33616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGA</genome_strand>
        <mrna_strand>GAGGATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG................................................................................................................................................................................................................................................................AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542907" ref_strand="+" ref_description="SGN-E542907 [TUS-64-H5]">
      <seq>attttaattactatcatatatatatatataaagtaggaaacatgactatgattatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttggaagatactcaacaggtataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="32532" stop="33936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32832" g_stop="32986" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32987" i_stop="33242" i_length="256">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33243" g_stop="33387" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="300" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33480" g_stop="33636" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="457" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E542907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32832" e_stop="32986"/>
          <exon e_start="33243" e_stop="33387"/>
          <exon e_start="33480" e_stop="33636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAAT</genome_strand>
        <mrna_strand>ATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG................................................................................................................................................................................................................................................................AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747484" ref_strand="+" ref_description="SGN-E747484 [GI|37962660]">
      <seq>atgactatgattatgctgaagaatctcttgttctcccctcttcgtggtttcatccacaaagattttcatcagatacttgacaaaatgaatctccgcgacaaactttcatttctgatagttcatatcattgataaacataacttgtggcaccgggtaccggtgtttttagggctagtttatcttgcacttcgtcgacatcttaatcaggaatataatttgatcaacgtgggtagaacaccgagcggagtccgatcgaatccgggcgacttcccttatagaacagcagatggaaaatataatgatcctttcaatgaaggagcaggaagtgaattttctttctttgggaggaatatgatgcctgttgagcaacatgacaagttaaagaatccagatccaatggtagtggcaacaaagctgctagcacggagagaattcatagacactggaaaacaatttaacatgatagctgcatcatggatacagtttatgattcatgattggatcgatcatttggaagatactcaacagattgaggagcttagggcacctgaagaagttgcaagtcaatgtcctctcaagtcctttaagttttacaaatcaaaagaaactcctaccggattttacgaaattaaaaccggtcatttgaataggcgtaccccttggtgggatggaagtgttatttatgggagcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaatttatagagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="32573" stop="35859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32873" g_stop="32986" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32987" i_stop="33123" i_length="137">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33124" g_stop="33387" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="378" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33480" g_stop="33629" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="528" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33630" i_stop="33696" i_length="67">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33697" g_stop="33833" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="665" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33834" i_stop="33923" i_length="90">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33924" g_stop="34137" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="879" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="1025" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34428" g_stop="34659" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1253" r_length="228" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34736" g_stop="34938" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1456" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34939" i_stop="35008" i_length="70">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="35009" g_stop="35252" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1457" r_stop="1700" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="35331" g_stop="35559" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1701" r_stop="1929" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E747484" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1933</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32873" e_stop="32986"/>
          <exon e_start="33124" e_stop="33387"/>
          <exon e_start="33480" e_stop="33629"/>
          <exon e_start="33697" e_stop="33833"/>
          <exon e_start="33924" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34659"/>
          <exon e_start="34736" e_stop="34938"/>
          <exon e_start="35009" e_stop="35252"/>
          <exon e_start="35331" e_stop="35559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTGGTAATCATTTATAGTCACTGAACCATTGATATATATATATATATATATGTATGTTGTTTTTATTGAGAAATTAAAAATGTGTCTGAAGAAAGAAAGATCAATATTATTAACCATATTCTGTGAACATGAATTTGCAGATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAGGTACGTACGTACGTACTATAACACTCACGAAATTCTATGGCATATTAATAAATGTTGTGTTTTTCAAATTTATAAAATGCATATGCATGCAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAATTCACAATTTAATTAATAATGACAAAGTTTTGTTAATTGTAACCATAAATTTTGAGTACAGATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTGGTAATAAGAATATTTTCCACAAAATATAGTATTATACTAATATGTGTATTTAAACGTTAAGTAATTTGTGTGTGTACAATACATGAAAAGGGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACACGAATCCCAATGGGAGATTTAATCGGAGGC-AAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAA</genome_strand>
        <mrna_strand>ATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG.........................................................................................................................................ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG............................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG...................................................................ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG..........................................................................................GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAATCTATCCC-TTTGACTAACGA............................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATG-TTGACCTTGCAGCACTCGAAA......................................................................TTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544307" ref_strand="+" ref_description="SGN-E544307 [TUS-66-J4]">
      <seq>gagcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="33645" stop="35238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33945" g_stop="34137" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="339" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34428" g_stop="34659" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="567" r_length="228" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34736" g_stop="34938" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="770" r_length="203" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E544307" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33945" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34659"/>
          <exon e_start="34736" e_stop="34938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACACGAATCCCAATGGGAGATTTAATCGGAGGC-AAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAA</genome_strand>
        <mrna_strand>GAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAATCTATCCC-TTTGACTAACGA............................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATG-TTGACCTTGCAGCACTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306036" ref_strand="+" ref_description="SGN-E306036 [cLEY-13-A23]">
      <seq>agcaacgtagagatcttgaagaaagtaaggacatttaaagacggaaaattgaaactatcagaaaatggactccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="33646" stop="34916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33946" g_stop="34137" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="338" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34428" g_stop="34616" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="526" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E306036" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33946" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATG</genome_strand>
        <mrna_strand>AGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308069" ref_strand="+" ref_description="SGN-E308069 [cLEY-14-D10]">
      <seq>ttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatacttgggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="33719" stop="35162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34019" g_stop="34137" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="265" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34428" g_stop="34659" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="493" r_length="228" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34736" g_stop="34862" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="621" r_length="128" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E308069" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34019" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34659"/>
          <exon e_start="34736" e_stop="34862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACACGAATCCCAATGGGAGATTTAATCGGAGGC-AAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATAT</genome_strand>
        <mrna_strand>TTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAATCTATCCC-TTTGACTAACGA............................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308070" ref_strand="+" ref_description="SGN-E308070 [cLEY-14-D12]">
      <seq>aaaatggaaaaattatatctggagatgtccgcaatactggggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccacaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggagcaattttgggtggtttagtatgactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatctgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaangacaagagaatttatcaagaatcggatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="33731" stop="35099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34031" g_stop="34137" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="253" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34428" g_stop="34659" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="481" r_length="228" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34736" g_stop="34799" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="546" r_length="65" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E308070" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34031" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34659"/>
          <exon e_start="34736" e_stop="34799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACACGAATCCCAATGGGAGATTTAATCGGAGGC-AAGGAGAGGAGAATTTATCAAGAATCGGATTTACTA</genome_strand>
        <mrna_strand>AAAATGGAAAAATTATATCTGGAGATGTCCGCAATACTGGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCACAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGAGCAATTTTGGGTGGTTTAGTATGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATCTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAATCTATCCC-TTTGACTAACGA............................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAANGACAAGAGAATTTATCAAGAATCGGATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544037" ref_strand="+" ref_description="SGN-E544037 [TUS-66-C15]">
      <seq>ggctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaatctatccctttgactaacgaaatcccaatgggagatttaatcggaggcaaaggagaggagaatttatcaagaatcggatttactaagcagatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaaagacagagaaagaagtgttgctaggtacaatgaatttcgaaagagaatgttgcaaattcccatcactaaatgggaagatttgnacgatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="33771" stop="35450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34071" g_stop="34137" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="213" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34428" g_stop="34659" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="441" r_length="228" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34736" g_stop="34938" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="644" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34939" i_stop="35015" i_length="77">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.014" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35016" g_stop="35150" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="779" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E544037" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34071" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34659"/>
          <exon e_start="34736" e_stop="34938"/>
          <exon e_start="35016" e_stop="35150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGAGTAAGTCATATATATATATATCATTGTGATTTTTGTGTATATATGATAATTATTTTACCTAATATAAAATTACACGAATCCCAATGGGAGATTTAATCGGAGGC-AAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGT</genome_strand>
        <mrna_strand>GGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAATCTATCCC-TTTGACTAACGA............................................................................AATCCCAATGGGAGATTTAATCGGAGGCAAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATG-TTGACCTTGCAGCACTCGAAA.............................................................................AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAAGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGNACGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302764" ref_strand="+" ref_description="SGN-E302764 [cLEY-1-K9]">
      <seq>gctggatttgtaacactgcaagcgctctttgtacaagagcataatcttgtttgtgatgtcttgaagaaagaatatccagaattggaagatgaagagttgtatcgtcatgcaagactggtgacttctgctgttattgcaaaagttcacacaatagattggactgtcgagcttcttaaaacagacaccttatttgcagcaatgcgaaccaattggtatggattgctagggaagaaatttaaagatacatttgggcacgttggaggtgcaattttgggtggtttagtaggactaaaaaaacccgaaaatcatggagtgccttattccttaactgaagaatttgtgagtgtgtatcgaatgcatcaactcttacctgataaacttcagttaagaaatatagatgcaacttctggaccaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="33772" stop="34938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34072" g_stop="34137" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34203" g_stop="34348" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="212" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34428" g_stop="34638" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="420" r_length="208" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E302764" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34072" e_stop="34137"/>
          <exon e_start="34203" e_stop="34348"/>
          <exon e_start="34428" e_stop="34638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAGGTACGTAAGATTACTTTTAAAATTCAATATTTCATACTTTAATTTAATTTTCAATGTTGTTGCAGAAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTGGTTAATATTATTTATTCTCATACAAATTAGTTAGTTTTTTTAGCTACTTAATTATTAATGATATTATTTGGATACACAGGTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAA</genome_strand>
        <mrna_strand>GCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG.................................................................AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG...............................................................................GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCA-GTTAAGAAATATAGATGCAACTTCT-GGACC-AAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544036" ref_strand="+" ref_description="SGN-E544036 [TUS-66-C15](-)">
      <seq>gatggtttcaatggggcatcaagcatgtggagctcttgagctttggaattatccaatatggatgagggatcttattgctcaagatgttgatggaacagacaggccacatcatgttgaccttgcagcactcgaaaagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgatatggaagttattaaaacacttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtgtatctatctatctttatttaatgtttctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="34504" stop="36004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34804" g_stop="34938" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34939" i_stop="35015" i_length="77">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.014" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35016" g_stop="35252" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="371" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35331" g_stop="35709" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="749" r_length="378" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E544036" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34804" e_stop="34938"/>
          <exon e_start="35016" e_stop="35252"/>
          <exon e_start="35331" e_stop="35709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAAGTAAGTTTTTATTTTTATGCTAGAAACTTCAAATATGATTTCTCAAATCCTGAATCCATGTGATTTGCAGTTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTA</genome_strand>
        <mrna_strand>GATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATG-TTGACCTTGCAGCACTCGAAA.............................................................................AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTC-TGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542906" ref_strand="+" ref_description="SGN-E542906 [TUS-64-H5](-)">
      <seq>atagagacagagaaagaagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgacggatgattatggaagttattaaaacccttcatgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="34712" stop="35883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35012" g_stop="35252" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35331" g_stop="35583" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="495" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E542906" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35012" e_stop="35252"/>
          <exon e_start="35331" e_stop="35583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGA-TATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTAC</genome_strand>
        <mrna_strand>ATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATTATGGAAGTTATTAAAACCCTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544306" ref_strand="+" ref_description="SGN-E544306 [TUS-66-J4](-)">
      <seq>tcatgaagtttatggtgatgatgtagaacaattggatctgttagtggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcacaagcaattacaacgaggagacatacacaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtgtatctatctatctttatttaatgtttcttgataagataattgtaatctttatattttatgtataatgttcttgtgttactcttcttatttaacgtcaaaaaactttttttttatatcaaaaaaaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="34827" stop="36087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35127" g_stop="35252" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35331" g_stop="35786" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="580" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E544306" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35127" e_stop="35252"/>
          <exon e_start="35331" e_stop="35786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</genome_strand>
        <mrna_strand>TCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAG-TGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAAC-TTTTTTTTTATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302765" ref_strand="+" ref_description="SGN-E302765 [cLEY-1-K9](-)">
      <seq>catgaagtttatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaaaggatttgccatctctgagactgcatttttcatattccttctcatggcatcaaggaggttagaggcagatagatttttcaccagcaatttccaacgaggagacatacccaaagaaaggattagaatgggtgaatactactgagagtttgaaagatgtgttagatcgtcattatccagaaatgactgataaatggatgaattcaaacagtgccttctctgtttgggattcttctccacaacctcacaatcctgttccactctactttcgtgttcctaaacattaaactaataatacctaatttatttacttatcgaaaatgaaatatgaagaattgtgtggtatatttccgtttttacgtaattgtttcagtttgttaaattaatgatgtggatccatccatctttaattaaaggttcctggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="34828" stop="36004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35128" g_stop="35252" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35331" g_stop="35695" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="491" r_length="366" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="504"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E302765" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35128" e_stop="35252"/>
          <exon e_start="35331" e_stop="35695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAGGTAATTGGTATTTGCTACTTAATTTATAACTTTCAATTTTAAACGCAAAGTATGTTGATTTTATAGAACTTATTGCAGGAGGTTAGAGGCAGATAGATTTTTCACAAGCAA-TTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTG</genome_strand>
        <mrna_strand>CATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG..............................................................................GAGGTTAGAGGCAGATAGATTTTTCACCAGCAATTTCCAACGAGGAGACATACCCAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGGATCCATCCATCTTTAATTAAAGGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700560" ref_strand="+" ref_description="SGN-E700560 [FA13BH06]">
      <seq>ctcattataatgtttgggcaatcctcctccttttgagctaacttttgggttatggttcacttgattgataaattgaacctgtggcaccggctaccagtgttcttggggctactttatctcgcagcacggcgacatcttcatcagcaatataatttgatcaacgtcgatagaacatttactatcgatgttacatcaaatcgggtcgtcgaaaaatacaacgacccctttaatgaaggatgtggcagtgaattacctttctttggtaggaatatgatgcctgttgttcaacatgaaaagttaaagaatccagatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaattcaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactcaacagattgagctaagggcacctgaagaagttgcaagtgagtgtcctctcaagtccttgaagtttttcaagaccaagcaaacacctacgggtttatgtgatatcaagacgggtcacttgaacatacgtactccacagtgggatggaagtgctatttatgggagcagatctgaagtttcaaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatgcttgcgctggacttgtaactctgcaagcgctctttgtacaagagcataatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="39088" stop="44035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39388" g_stop="39438" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39439" i_stop="40589" i_length="1151">
            <donor d_prob="0.209" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40835" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="297" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43090" g_stop="43239" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="447" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43340" g_stop="43473" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="581" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43539" g_stop="43735" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="778" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E700560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39388" e_stop="39438"/>
          <exon e_start="40590" e_stop="40835"/>
          <exon e_start="43090" e_stop="43239"/>
          <exon e_start="43340" e_stop="43473"/>
          <exon e_start="43539" e_stop="43735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTTGTGAGTTAAGCCTAAGACCTAATTTCACAGAACACTCCTTTTTTTTCGTTTTATCTTTGACTAACTATATTAGAATTGTCAAAGCTATAAAACTTTCTATGATTTTTAAATTTTATAAAACGTGCTAATACATTATTTACGAGTATTATTTTTGTAGGATACTCGTGCCTCTCTACTCCATCTCTATATATAGAAGGATGTGTTCCTCCAAAATCAAGCATTTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACCTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATAGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTG</genome_strand>
        <mrna_strand>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG.................................................................GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGCGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692816" ref_strand="+" ref_description="SGN-E692816 [LH_Ea09L06]">
      <seq>tgaccctttaaaccgtatatatttatagcttgtagaaaattaaaccctttacatgggttttgttaatctttttctatttcctcttcgttgtttcattcacaaagattttcatgatgctgttgacaaaatgagtcttctcaacaaacttttgtttaggatggttcacttgattgataaattgaacctgtggcaccggctaccactgttcttggggctactttatctcacagcgcggagacatcttcatgagcaatataatttgatcaacgtccgtagaatatttactaccgatgttacatcaaatcgggacgatgaaaaatacaacaacgatccctttaatgaaggaggtggcagtgaattacctttgtttgggaggaatatgatgcctgttgatcaacatgaaaagttaaagaatccacatccaatggtagtggcaacaaaattgctagcacgcagaaaattcatcgatactggaaaacaatttaacatgatagctgcctcttggatacaatttatgattcatgattggatcgatcatttggaagatactctacagattgagctaagggcacctgaagaagttgcaagtgagtgtactctcaaggcctttaagtttttcacgaccaagcaaacacctacgggtttatgtgatatcaagactggtcacttgaacatacgtactccacagggggatggaagtgttatttatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="39372" stop="43791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39660" g_stop="39816" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39817" i_stop="40589" i_length="773">
            <donor d_prob="0.951" d_score="0.92"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40590" g_stop="40835" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="406" r_length="249" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43090" g_stop="43239" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="556" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43340" g_stop="43473" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="690" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43539" g_stop="43562" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="714" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E692816" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39660" e_stop="39816"/>
          <exon e_start="40590" e_stop="40835"/>
          <exon e_start="43090" e_stop="43239"/>
          <exon e_start="43340" e_stop="43473"/>
          <exon e_start="43539" e_stop="43562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATGGTAATATATATATTCTTTACTAATCAAGTTAATTTTTTCTTTGTTTTCCACCCAAAATAAGTTTTTTAATGCTATTGAATTGAAGAATAATTTTTTAGATACCAAACATGAGCTAGTTGATTAAGAGGCCCATAGTTTTACAAAAATAATGACCTCTTTATCTGAATTTTTAACCAAATTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCATGGTAACGTTTTAGGGTATATTTTATTTTTTAAAAACTAACAACATTAGGTTGATACACGGTACTGTATAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACTCCTAAAACGTTACTGTGAGTAACGTATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTATGGAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTATTTTGGTGAATGACCTTTATATAATGGCTTAATTTGATTAAAACCTCTCTTTATCTCCACTAGGTAGTGGAGATAAGATATCTACGTACTGATCATTCCTTGTCATACCTTAGTTATGAGATTACATTGGATTTGATGTTTCGTAATTGGTTGCGTTCCTCGATTGTTCTGTTAATAAATTTATTTAATTTGCTATAGAGTCAAGTTATCACAATTGTTTTTAATTAAACCTATGGTGTACGTACGTAAATTTTAATTTAAATTGTGACATGCATGTAGATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAAT---ACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAGGTATAAACATTTTCTAATTTATCTACTCATTTCATAAATACTTGTAAGCTAAATTTTAACCAAAAGTTATATATTAGTCATCCCCAATTTATAGGGGCCTGTTGATATAATTGTTTGTGTTTATTTAAATATATAAATAATGAGTGTCATATTTACAATCTAAAAAATTGAACTCATTAGATATAAAATTTGGAATCCACCTTGCTAGACTTGGTAACGATTTTGATTTGATCAAGGTTTTACTTATTTAAGCGTTAGAGTCTGTTTGACATACTTATTGGAAGGTCAAAAGTGATTCTTTTTTTTAAAAAAAAAACATAGTATTTGACAAATCTTTCGAAGTGCTTTTAAATGAAAGCAAAAATTATTTTTCTGTTGGTGTAAATTAATAAGCTAAAAATTTCGTCTTTTCAACAAAAATAGGTTAAAAGCAGAAGAAGAAACTATCTTTTCCATATATACATATTTATGAATATACCCTTATTGATTAATTGACATATCTCATAATTTAATTAAGTTTCAATCAAAAAAAAAATATTTTATTTTCATTACCAGGATACTATTAAATTTACAAGTTTTATAAAATTAATTAAGGGTACATACTTCAATCATTCTAAGAAAGACAACTTATGGCACTTTTCATTTTTCCAAACACGTCATTATTGTTATTGAAAGGTTTAACTCATTGGTGGCCTCTTAAATAGAAGCAAACTTTCACTTAGACGTCTTAATTAGATTTTATTTATTTTAGACACCTATATCATATTCTATTGTGTCATTTTGACACTTTTTGCTAACATGATATGGTGAGTATAATAAAATTATAAAAAGCACATGAAAGACATTTTAAACATATTTTTATTTAATTTTTTCCTTATTCTTTCCTATTTTTGGGCCACCATTTTCTCTATCTTAAGGTCCTTCACTGGTTAAAAGAGTTGAGAGTGATTTTAGAGTTGAATAAACCTCTCTACGTAGATTAGGTTTGATGGTTAAATTGGTGAAGAATTTATTGTTAAATCATGTCAGTTTAGATTATTTTGTTGAAAGTCAATATTACGACTTCACTAACAAATTTTTTTCTAGATTAGACAATTCATTGTGTGATATTTAGCCTTAATTACTTTCTCAAATTCTTCATTAAAATAACAGTCCTTAGTTTAGAAGCTGAATAAATGACCACTTTGTTAGTGTATAATGGAATCCTCTGACTAATAAAGCTAAAAAGCATTGAGATATGACGATCAACGGAGAAGACGAAGGGGGTTGGGTTTAATTCGTTAGAGAAGACGACTAGGGTTGGGGGTGGGGGGGGGGGAGTTATGTAAAGTAATTTCTTTTTTGAAAAAATAATTTATTCAAAGTTCATAATTAAAGAATTGTTTTTGTGTTAAAGAACAAACGTTTTCGTTTAATTTGGTATTTTGACACATCATCAGCGAGTGAGTTATACTCACTTTAAATTTTTGTTGACTATGAAAAAAGTATCAAAATGACACAATACAACATGATATAAAGCGTCTAAAATAAACAAAATCTAGTTAAGATGTTAGTCTAAATTTAAGAAATCACTGATGAGGTAGGCCTTATTGAAAATTGACAATATATACCCTTGATTGCCCGGCAAAAGGAAAATGACTGTGAGTACGTCTTTTTAGTAGCATCGTTTTCCTTGCTATCGACCGTTTTATATATATATATATCCTTGCATTGCATGTATGGTCCCAATTCACAAAACTTCATTTATAAAAATTGCAAGAAATTAAATTATAAATATGAACTAATGATAACTTTAAAGATATCATATATACAATACAAAAAAAATTAAAATTTAAATCCATAATAATACTTAAATTTGCCTTTGGGTGAATGCCAGGCATGACTAAAACAGTACTTGCAATGCACCATCTCATGATCTTATAAATAATTTATGTTAGTATAAAACTTAAATCAATTAAGCTGATTTGAGTCCCTTTTTCTTTAAAAATAAATTAAGCTGAATTTTCAAATGCTGAAATCAAATCAAACTAATTACATTAATTTTTAATATTTTATTTTATTTTTGTTTGTATTTTTGGTTACTTAACTTTTATCAATTTTTTTTAAAATATAAAATCAATGACTTTTTTTTGTGTGTGTGCGTGTGTGAGCAAAATTTAAAGATCTACTTGTGAGTTGTGATAATTTGAATTAAGCATTAATGATGAATAGTTTATCAAAAGAGAAATATGTAATTTTCTTTCTTAAATTACAGTTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTGAGCAATGAGTTAATTAGCAATTTGGTAATCACAATTAATGATTCGTTACGTACTGTAATTTAATTAATTTGGTGCGCGCGTATATATATATATATAGATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTGGTAAGATTTCATTACTAAAATTTTAACGGTCGATTTGGAATTGAAATTTGTACTTGTAAATGAAGGGATGGAAGTGCTATTTATGGGAG</genome_strand>
        <mrna_strand>TGACCCTTTAAACCGTATATATTTATAGCTTGTAGAAAATTAAACCCTTTACATGGGTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGCTGTTGACAAAATGAGTCTTCTCAACAAACTTTTGTTTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCACTGTTCTTGGGGCTACTTTATCTCACAGCGCGGAGACATCTTCATGAGCAATATAATTTGATCAACGTCCGTAGAATATTTACTACCGATGTTACATCAAATCGGGACGATGAAAAATACAACAACGATCCCTTTAATGAAGGAGGTGGCAGTGAATTACCTTTGTTTGGGAGGAATATGATGCCTGTTGATCAACATGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAATCCACATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTTAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCTACAG....................................................................................................ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTACTCTCAAGGCCTTTAAGTTTTTCACGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACTGGTCACTTGAACATACGTACTCCACAGGG.................................................................GGATGGAAGTGTTATTTATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250206" ref_strand="+" ref_description="SGN-E250206 [cLEG-11-M15]">
      <seq>aaagaaagtgaggacatttaaagacggaaaattgaaactatcagaaaatgggctccttgaacaagatgaaaatggaaaaattatatctggtgatgttcgcaatgcttgggctggactcgtaactctgcaagcgctctttgcacaagagcataatcttgtttgtgacaccttgaataaagcatatatcccaaattgctggatgaagaactgtatcagcctgcaaaacgtgtcactgctgctgtaattgctaaaattcacaccatatattggacagttgaacttctcaatacagacacccttctagcaggaatgcgcgccaattggtatggattgttaggaaagaaattcaaggatacattgggtcatgttggaggttccattttaagaggttttgtgggaatgaagaaacccgaggatcatggagtgccttattccttaactgaggaatttacgagtgtctatcgaatgcatcaactcctgcatgatacacttgagctaagaaatatcgatgccacgcctggactaaacaaatctcttcctttgactaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="43278" stop="44597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43578" g_stop="43752" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43753" i_stop="43832" i_length="80">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43833" g_stop="43978" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="323" r_length="148" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43979" i_stop="44069" i_length="91">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44070" g_stop="44297" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="551" r_length="228" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E250206" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43578" e_stop="43752"/>
          <exon e_start="43833" e_stop="43978"/>
          <exon e_start="44070" e_stop="44297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAGGTACTAATCTTAGTGATCTTGGATTATTTTATTTTTTTCGAGTATTTTTACAACCTGAATTGATTTTCAAATTTTTCCAGAAAG-A-ATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTGGTCAATAATCTCAAATTAACACAAGTTATTTTCATTTTGTCAACTACGTAGTACTGAGCATGACTCAAATGAATTAATTTTATGTTCGCAGGTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</genome_strand>
        <mrna_strand>AAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTCGTAACTCTGCAAGCGCTCTTTGCACAAGAGCATAATCTTGTTTGTGACACCTTGAAT................................................................................AAAGCATATATCCCAAATTGCTGGATGAAGAACTGTATCAGCCTGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATATATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG...........................................................................................GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTGGGTCATGTTGGAGGTTCCATTTTAAGAGGTTTTGTGGGAATGAAGAAACCCGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCATGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696656" ref_strand="+" ref_description="SGN-E696656 [LH_Ea09L06](-)">
      <seq>gatggaagatctaattgggggtaaaggaaatgagaatctatcaagaattgggtttactaagcaaatggtttcaatgggacatcaagctagtggagctcttgaactttggaattatccgatatggatgagggatcttattgcccaagacgtcgatggaacagacaggccagatcatattgaccttgcagctcttgaaatttatagggacagagaaaggagtgttgctaggtacaatgaatttcgaaggagaatgttgcaaattcccatcactaaatgggaagatttgagtgatgatatggaagttattaaaacacttaatgaagtatatggtgatgatgtagaacaattggatctgttagttggaatgtccgcggagaaaaaaattaagggatttgctatctctgagactgcctttttcatatttctaatcatggcatcaagaaggttagaggcagataaattcttcacgagctattacaatgaggagacatatacaaaaaaaggacttgaatgggtgaatacaactgaaagcttaaaagatgtactagatcgacattatccagagatgactgagaaatggatgaactccaacagcgccttttctgtttgggactcgtctccagaacctcacaatccaattccagtctactttcgcgttcctcggacataggctcaattatacttcaaatcaaaataaaaagaagtaatacgtgtgttgattagtttttacctgcaaatgtggaataagattccatgtactatcctcactacctgtttcaaggagtaagcagttttatgaaactattcagagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="44082" stop="45674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44382" g_stop="44578" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44579" i_stop="44666" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44667" g_stop="44910" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="441" r_length="244" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44911" i_stop="45013" i_length="103">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45014" g_stop="45373" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="810" r_length="369" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="827"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E696656" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44382" e_stop="44578"/>
          <exon e_start="44667" e_stop="44910"/>
          <exon e_start="45014" e_stop="45373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAAGTACAGTTTATTTCTCAGGACTAAAACTACTTCAAAATAAATAAATAAAACAGAGTATATATAATTGATATTGTTGTTTGGATGGCAGTTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAGGTTCGTACTAGAACTGAAAAAAAGAAGCAATTATCATTTATGCATAACAATATTATGCCTTTGTAGATTGACTAATATTGAAAGTTGATTTATAAATTTACAGAAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTC------A----AAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</genome_strand>
        <mrna_strand>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCATATTGACCTTGCAGCTCTTGAAA........................................................................................TTTATAGGGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGATTTGCTATCTCTGAGACTGCCTTTTTCATATTTCTAATCATGGCATCAAG.......................................................................................................AAGGTTAGAGGCAGATAAATTCTTCACGAGCTATTACAATGAGGAGACATATACAAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGGACTCGTCTCCAGAACCTCACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAATTATACTTCAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGGAATAAGATTCCATGTACTATCCTCACTACCTGTTTCAAGGAGTAAGCAGTTTTATGAAACTA-TTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341330" ref_strand="+" ref_description="SGN-E341330 [cTOE-22-H10]">
      <seq>taaccatcacctactctagaaaaattaacccattcttcacttaaagtagaacaagcaccacatttctctctgtttctctcttctccttgttgttaatgtatatcaaatgaagatgaattttcacaattataatctatttaaagaggataagtttcgtagcccaggtttcttattgatctattcactctttctaaccgtgattttcagctgctacatgcttcatttttccttcagcccaaacgttaacttcataaccaaacaagattcagctcctcctactaaatcctcacacgttacaaatcactctcaacctgcagttcacaacaacattacatccgattgtgacttgttgaatggtaattgggttttagaggagaagggtaattattctctgtattatacaaactttagctgtccaacaattccgcattcaaaaaactgtttgttgaacggaagggcagatgaaggatttatgcagtggagatggaaaccagaagaatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="48383" stop="47192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48083" g_stop="47768" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47767" i_stop="47679" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.693" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47678" g_stop="47492" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="504" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E341330" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48083" e_stop="47768"/>
          <exon e_start="47678" e_stop="47492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTG-TGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAGGTAAGTAAGTTTTTTAATCACTTATTGTACGTATTTCTCACTAGTTTTACATTGGATGTCAACCTCGTCTTTGCTCATATTTTTGGCAGTTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</genome_strand>
        <mrna_strand>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG.........................................................................................TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317514" ref_strand="+" ref_description="SGN-E317514 [cTOB-17-M13]">
      <seq>agagatcagctactgacaaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49632" stop="54337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49932" g_stop="50023" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="243" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="402" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="561" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53156" i_stop="54005" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54006" g_stop="54037" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="593" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E317514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49932" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="54006" e_stop="54037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTC</genome_strand>
        <mrna_strand>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342682" ref_strand="+" ref_description="SGN-E342682 [cTOF-7-F10]">
      <seq>aaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49649" stop="53457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49949" g_stop="50023" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="226" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="385" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="445" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="544" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E342682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49949" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT</genome_strand>
        <mrna_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344899" ref_strand="+" ref_description="SGN-E344899 [cTOF-21-P1]">
      <seq>caaaactccattaaaactccctattcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacaagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatgtgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttccagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcacgaaaagaggatgcagatggagttggtggcatctgcttcattcgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcaacatatccttctccctacatgcagagatcatgcatccttgagttggatggggcttcaaggggaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49654" stop="54351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49954" g_stop="50023" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="381" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="441" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53991" g_stop="54051" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="600" r_length="60" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E344899" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49954" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="53991" e_stop="54051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCCATTAAAACTCCCT-TTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTG</genome_strand>
        <mrna_strand>CAAAACTCCATTAAAACTCCCTATTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACAAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATGTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCCAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCACGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTGCTTCATTCGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCAACATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGAGATCATGCATCCTTGAGTTGGATGGGGCTTC-AAGGGGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710848" ref_strand="+" ref_description="SGN-E710848 [FA57AA06]">
      <seq>cgcacttattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49663" stop="54530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49955" g_stop="50023" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="219" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="378" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="438" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="537" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53991" g_stop="54098" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="645" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54099" i_stop="54178" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54179" g_stop="54230" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="697" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E710848" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49955" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="53991" e_stop="54098"/>
          <exon e_start="54179" e_stop="54230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAAT</genome_strand>
        <mrna_strand>CGCACT-TATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318015" ref_strand="+" ref_description="SGN-E318015 [cTOA-30-D24]">
      <seq>aaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcangaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctanctggtgctggggctgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49655" stop="54377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49955" g_stop="50023" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="220" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="439" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="538" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53156" i_stop="54005" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54006" g_stop="54077" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="610" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E318015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49955" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="54006" e_stop="54077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTG</genome_strand>
        <mrna_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCANGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTANCTGGTGCTGGGGCTGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338844" ref_strand="+" ref_description="SGN-E338844 [cTOE-21-G21]">
      <seq>aactccattaaaactctttttcttcaccttccaaccaactacttccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49657" stop="51107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49957" g_stop="50023" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="218" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="322" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E338844" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49957" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGA</genome_strand>
        <mrna_strand>AACTCCATTAAAACTCTTTTTCTTCACCTTCCAACCAACTACTTCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338334" ref_strand="+" ref_description="SGN-E338334 [cTOE-13-P23]">
      <seq>cctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgccatgtattctatggatttcagtgatgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49953" stop="51122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50011" g_stop="50023" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="164" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50822" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="283" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E338334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50011" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCG</genome_strand>
        <mrna_strand>CCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCCATGTATTCTATGGATTTCAGTGATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376663" ref_strand="+" ref_description="SGN-E376663 [TUS-18-M2]">
      <seq>tcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49953" stop="54542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50013" g_stop="50023" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="162" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53991" g_stop="54098" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="588" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54099" i_stop="54178" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54179" g_stop="54242" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="652" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E376663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50013" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="53991" e_stop="54098"/>
          <exon e_start="54179" e_stop="54242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</genome_strand>
        <mrna_strand>TCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231746" ref_strand="+" ref_description="SGN-E231746 [cLED-4-F8]">
      <seq>tcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49953" stop="54397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50013" g_stop="50023" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50260" g_stop="50410" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="162" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53991" g_stop="54093" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="583" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E231746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50013" e_stop="50023"/>
          <exon e_start="50260" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="53991" e_stop="54093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAA</genome_strand>
        <mrna_strand>TCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346458" ref_strand="+" ref_description="SGN-E346458 [cTOF-23-L1]">
      <seq>gaaaatgccctaaatatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctgggtgctgggctgtgctgcgtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49821" stop="54385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50121" g_stop="50410" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="448" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="508" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="607" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53156" i_stop="54005" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54006" g_stop="54085" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="687" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E346458" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50121" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="54006" e_stop="54085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCT-GGTGCTGGGGCTGTGCTGCGTGCTGC</genome_strand>
        <mrna_strand>GAAAATGCCCTAAAT-ATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGGTGCT-GGGCTGTGCTGCGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347187" ref_strand="+" ref_description="SGN-E347187 [cTOF-25-K2]">
      <seq>gaaaatgccctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcanatggagttggtggcatctccttcatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49821" stop="53386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50121" g_stop="50410" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="449" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="509" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53057" g_stop="53086" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="539" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E347187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50121" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCA</genome_strand>
        <mrna_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAN..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341598" ref_strand="+" ref_description="SGN-E341598 [cTOE-23-E21]">
      <seq>ctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="49830" stop="54332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50130" g_stop="50410" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="440" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="599" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53991" g_stop="54032" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="641" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E341598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50130" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="53991" e_stop="54032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</genome_strand>
        <mrna_strand>CTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338561" ref_strand="+" ref_description="SGN-E338561 [cTOE-15-K19]">
      <seq>gaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="50002" stop="54494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50302" g_stop="50410" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50862" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="268" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52647" g_stop="52706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="328" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53057" g_stop="53155" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="427" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53991" g_stop="54098" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="535" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54099" i_stop="54178" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54179" g_stop="54194" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="551" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E338561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50302" e_stop="50410"/>
          <exon e_start="50704" e_stop="50862"/>
          <exon e_start="52647" e_stop="52706"/>
          <exon e_start="53057" e_stop="53155"/>
          <exon e_start="53991" e_stop="54098"/>
          <exon e_start="54179" e_stop="54194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTG</genome_strand>
        <mrna_strand>GAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG..............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393814" ref_strand="+" ref_description="SGN-E393814 [TUS-14-M3]">
      <seq>aataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcaaaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattaaagattgaaaagatatttatgatcaattgggtttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68283" stop="71767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68583" g_stop="68812" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="266" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70211" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="468" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71224" g_stop="71302" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="547" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71393" g_stop="71467" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="623" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E393814" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68583" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70211"/>
          <exon e_start="71224" e_stop="71302"/>
          <exon e_start="71393" e_stop="71467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATT-GGTTTGGTG</genome_strand>
        <mrna_strand>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAAAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAAAGATTGAAAAGATATTTATGATCAATTGGGTTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201929" ref_strand="+" ref_description="SGN-E201929 [cLEC-7-G11]">
      <seq>ataaataccagacagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68284" stop="71591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68584" g_stop="68812" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="265" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70211" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="467" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71224" g_stop="71291" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="535" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E201929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68584" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70211"/>
          <exon e_start="71224" e_stop="71291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCC</genome_strand>
        <mrna_strand>ATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712909" ref_strand="+" ref_description="SGN-E712909 [FB06AF08]">
      <seq>cagtactctgcaaacactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatgtaagtttagacttaagagctgtaaggaagttgctaaagaaaaaatctgatattgtagatgctcaatgaattgaaaaaataaataaaatgttactaccattagtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68296" stop="71918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68596" g_stop="68812" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="253" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70211" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="455" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71224" g_stop="71302" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="534" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71393" g_stop="71628" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="770" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E712909" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68596" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70211"/>
          <exon e_start="71224" e_stop="71302"/>
          <exon e_start="71393" e_stop="71628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGT</genome_strand>
        <mrna_strand>CAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718824" ref_strand="+" ref_description="SGN-E718824 [FC05DG05]">
      <seq>gggcgattggcggccaatcggccgaattgactcctacatttgtacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcaaaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaaggttggcccaagagtcacgatttccagatatacaaattagagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatgtaagtttagacttaagagctgtaaggaagttgctaaagaaaaaatctgatattgtagatgctcaatgaattgaaaaaataaataaaatgttactaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68311" stop="71909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68611" g_stop="68812" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="231" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="267" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70211" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="469" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71224" g_stop="71302" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="548" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71393" g_stop="71608" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="764" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="765" polyA_stop="782"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E718824" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68611" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70211"/>
          <exon e_start="71224" e_stop="71302"/>
          <exon e_start="71393" e_stop="71608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACC</genome_strand>
        <mrna_strand>ACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAAAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314375" ref_strand="+" ref_description="SGN-E314375 [cTOA-21-M7]">
      <seq>tacagtaaacatcatgaatatcatcaacagggcagcttcgatttttcttcttttggtgttcttcttggcttttttcaaagattctgttcatgggcgccctcttttactgtcaatgtccagacccaagccggatgatgctgccttatttgctcgatggctcgtttctcagaattattggggtgtcctcaatactatagcaagtgatatgggaggagcaccgttcgggaatgttgtctcatttagtgatgggttaccggacaaaggccgtggtataccatacttctacttaacaacgcttgatcccactgctagaaatgcattgaaagaccagagatcatcatttacaatcagtgagtacgccattggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaaggtggttgcactaacaactcttctcctttatacaagagattttatttaatttgatgcangtgtcttttaaacaagagttttttgtatcatgccgaatattctgtatcccactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="68324" stop="70625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68624" g_stop="68812" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69355" g_stop="69390" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="225" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619">
            <donor d_prob="0.934" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70010" g_stop="70325" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="541" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E314375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68624" e_stop="68812"/>
          <exon e_start="69355" e_stop="69390"/>
          <exon e_start="70010" e_stop="70325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAAGTATGTAGTAGTTCTCTTTTTTCTAACTGAAAGATCGAATCTTTTACTTCGATTTGTTATTTTTAGTCAACCCCAGTTGGTTTGGGATATTGATTGTTGTTGATTTTGCTTCATAGTTCATGACCTAGACAGATCGAGATTCTTGATTGATTGCTGTAAGTGTAAAGACATAATTTTTCTTGTTTCTTGTGTAGCACAACTTCTCAGTTACTCCTTTTGTTTCAGTTTATTTGTCTAATTTTGACCTTGATATGGAGTGTTTAAAAGTAAAGAAAAATTTGAATATTGTGGTGTTAAACTAAAGATATGCAGAATGTATAGTATTTTGACATGCTACGTGAAAAGTTGGATTGAAGAGTGCCCAAAAAAGGAAGAGAACTTCTTTTGAAACAACAAACAAATTGAAATGGATCTGCATTAAAGATGTTTCATTTGTGGCAGCTAAAGTCAACTTATTGCCTATAACAGATAACTGTACTGACTAAATAAATAATAACTGATAATTTTACCTGAAAGCTGATTCAGTGACCTTTCTTTTGCAGTACTATAGCAAGTGATATGGGAGGAGCACCGTTCGGGTATGTATGTTAGCCTATATCTCTGTAAATTGTTTGGGGAGCTATTTTGTTTGTTTTAAGTTTTGCTTATGGATGGATTGAGATTATCTGATAGTCCTAAAAGTTGACTCTTTTGGAAAGCTTTTCTGCAGTCATGTATTTCCTGATGCTCAGAATTCTCATTTTACTACCAAAAAGGAAAGAAAAAGGTTTCGGGATGTCCTTTATTTAATGTTAACTTCATAAGGGAGGGGTCAACCTGATTGTCATCATGTTATTTGGTATTAGAAATGTATTTGTTTTTGCCATTACTCTTATAGCATACAATTTACAGTATTTCTTTTAGTGCATTCTGAAGCTGCATGATCGTAAGTCAAGTATCACTTTAGGAAAAGGAAATGTCTACATAAGAAAGTGGAATGGTGATAATTTTAATTCAGGTGATAGTTCTTTGTTCGATTTTGAAGGGGTTTGGACTTTGAATTCTTTGAAATCTATCAACATAGAATTTCATGTTTCTTGAACCCCGATAAATTTTAGGACAAGAGATGGAGGATTTGTGGAATGAGATGTTTTATGGATTTGATGCTGTTCAAGCTTGTTTTAGTAGTCTTATCTTGAAGTACTTTCTGTTGTGCAGGAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTT</genome_strand>
        <mrna_strand>TACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCANGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281123" ref_strand="+" ref_description="SGN-E281123 [cLER-7-B9]">
      <seq>tggaacttgcggcaagaaagatcctgagaacccatcttgtgccaaaattaccctcgtaggaaagttgaaagtggttgctggagatccaaaggaaactagctttgctcaaactgctttatttacaaaacaccctgagatggaagggtggcccaagagtcacgatttccagatatacaaattatagattgaagagatatttatgatcaattggtttggtggtcccaaacctctcaccgtggatcagtatttgcaggctaaaatggatagtcacatgaccattgcatgaacgcctttatgtatacaatctgctgacaagttcttttcaagtgaaggttgaaagtggttttggaatgtgaaaaaagggtatcaattttagtgatcaatgaaattcaactgtaaataggagatacttgtgaagctcattatcattcattcacttgtgcatttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="69848" stop="72151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70148" g_stop="70211" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71224" g_stop="71302" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="143" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71393" g_stop="71510" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="261" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71511" i_stop="71660" i_length="150">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71661" g_stop="71851" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="452" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E281123" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70148" e_stop="70211"/>
          <exon e_start="71224" e_stop="71302"/>
          <exon e_start="71393" e_stop="71510"/>
          <exon e_start="71661" e_stop="71851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTTTCAGGGCATATTTTCACTCCAAAGTTCAGCGTATCCCCCTTAGTTCTACATTTAGAAATGAACAGTAAAAGAGGAAATACTTACAAAGGAGGATAAAAGACCTTAGGGAGAATGGAGCCCCACTTTTTGTTGTGGATTCTATACAAGGATAATGAGGAAGGGGCCCTCTTGCCAAACCTTATAAAAGATAATTAGGGAGACTCATCTACGGATGAGAATCTCTAAGAAAAATTTGAGCTCTGAGATCTTGACACGTAACTGGACATACTAAATGCAAGGTTAGCTAGTAGTAAGCTTGACTTTAATTGGATTTTGATCCAAATATTGATATATTCGAGGTTAGTTTCTCAGATGTTCATGCAATGCATGAGGATATATTATTAAAGTTAATTTTTTCACGCAATACTTGAGGATATAAAAGACATTTCAGGTATTATGGTAATTTGAGTCATCCTGAAACTCAATATTATGCTTGCTCGCAGAAGTTAGAAAGTATACTTGCATATTGCTGCACACATTTAATTCTGAAACAGACTGGTAGTCTGAACTTTCCACTAACTGGTTCCTTGGTAATCATTTGCCCTCAACTTTTCACTATGACACTGTAGTCGGTCTGCATCAATGTAGAAAAGAAAAGAGGAAACTAAAAAACATAATATGGATAATTGGAGAATCTGTTTTCACCATGGTTGTTATCATTATATGTTGTGCTAATTGAAGCAATTACGACGTTGATGGGTTCACTCGTTAAGCATATGAAGTACATGCTGATATGCAAACGTGTGGCTTGGATGTCCAGAAAACTAAGAGTTGATTTGTAGTTCCTTTGTTCTTAAGTGTAAGTATATCGTCCACATTCTTGCTAACATTATCATACTTTGTGTCTGTGCTGTTTTAGTTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAGGTAAATGTCTTGGATCTGCCATTCTAAACTACTACTGTCGTCCTATGTTTACTTTTGTTAACAACAACCCTCACATGTAACTAATGGCAGGTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGTCATTCCTTACTTAACACACGATCCATACGCAGGGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</genome_strand>
        <mrna_strand>TGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG..........................................................................................GGTGGCCCAAGAGTCACGATTTCCAGATATACAAATTATAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT......................................................................................................................................................GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739048" ref_strand="+" ref_description="SGN-E739048 [LC15DG10]">
      <seq>atcatcttcctcaacaccaatgttgcttcctttctgcaacttccatcccataaacccttctaaaaccctcttaaaaccctcaccatcacattccctcttctctagtacaccctctctttctccaaaacccttctttcctcgtgattcccttcctgttttcgccgcatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagtcttggatttgttgaacaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgcaaactcacccggtcaaattttcgttcctttgcctacccaattacccaagtaccgcgtgggtcacacgcttgacaccagttggagtacgcctgaaaacccagtaccgcagcctggtttagggaaatctatacagaagtttcatgaattgagggatgagttcttgaaggagaaggacaaggagaggttgaagaataaggagtataagaaagagagagcgcctagtttggcggagcttactttgccagctgaggaattgaggaggctgaggacagttgggattgcgctcaggaaaaagttaaagattggaaaggctgggattactgaggggattgtgaatggtattcatgaaagatggaggcgtatcgagcttgttaaaattacgtgcgaggacatatgtaggttgaatatgaagaggactcatgagttgttagagaagaaaactggagggctggttatatggagatctggaagtaatataattttgtataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="72612" stop="74470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72912" g_stop="73641" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73642" i_stop="74113" i_length="472">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74114" g_stop="74170" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="787" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E739048" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72912" e_stop="73641"/>
          <exon e_start="74114" e_stop="74170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAGGTTAATAATACTTACACCCCAATACTCAATTGTCATTGTTTAAAGAAATTGAAACTGCATTCTTGGATTTTCCTGTGTAGATTAATGTAAGAAAACAATATGAAACAGCTTCACTTTGGCAATTTCTTCAGCCCTCTGTGTTGCATATTTAATTAAAGAAAGTGAGTTAATTGCCTTAGAGGACATGGATACCAGAAGAATGTATGCAACTGGTTTACTGATCCTATGGTTGTTTGCCCTGCACTTCTCTATACCACTAATTCTGAGTATATGAATTTACTTTTCCTTTAGATGTCTCAGATATGTTATATTCTATATGACATGAGTTTCCTGATCAAGAATTATAATGGTTTGGTGTTTAACCGTATTGCTTTTTCATAGGTAGAATTCATAGCTCGTAAGTTAGTTTTAATGTGCAGTACACCTCTACCATAATTCTTATCATTACTTTGGCTTATTTAAATATTCACAGAAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGA</genome_strand>
        <mrna_strand>ATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAACTGGAGGGCTGGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739060" ref_strand="+" ref_description="SGN-E739060 [LC16AA01]">
      <seq>ctatggaagttgcagaaacccttctaaaaccctcttaaaaccctcaccatcacattccctcttctctagtacaccctctctttctccaaaacccttctttcctcgtgattcccttcctgttttcgccgcatcccctgatactgaagctttaccggaatccgccatccgaagaatcgccgacaagctacgcagtcttggatttgttgaacaacccaagaatcaagaaacccaagaaaatgctttgagttctaatcccactgcaaactcacccggtcaaattttcgttcctttgcctacccaattacccaagtaccgcgtgggtcacacgcttgacaccagttggagtacgcctgaaaacccagtaccgcagcctggtttagggaaatctatacagaagtttcatgaattgagggatgagttcttgaaggagaaggacaaggagaggttgaagaataaggagtataagaaagagagagcgcctagtttggcggagcttactttgccagctgaggaattgaggaggctgaggacagttgggattgcgctcaggaaaaagttaaagattggaaaggctgggattactgaggggattgtgaatggtattcatgaaagatggaggcgtatcgagcttgttaaaattacgtgcgaggacatatgtaggttgaatatgaagaggactcatgagttgttagagaagaaaactggaggtcttgttatatggagatctggaagtaatataattttgtatagaggagctgattacaagtatccttatttctctgagaatagcttcgagaataacagtgcacaagatgctaaccctgacttgttcatgggtgcggaagagcacatgactaactcatctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="72660" stop="74587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72948" g_stop="73641" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73642" i_stop="74113" i_length="472">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.218" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74114" g_stop="74287" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="868" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E739060" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72948" e_stop="73641"/>
          <exon e_start="74114" e_stop="74287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAGGTTAATAATACTTACACCCCAATACTCAATTGTCATTGTTTAAAGAAATTGAAACTGCATTCTTGGATTTTCCTGTGTAGATTAATGTAAGAAAACAATATGAAACAGCTTCACTTTGGCAATTTCTTCAGCCCTCTGTGTTGCATATTTAATTAAAGAAAGTGAGTTAATTGCCTTAGAGGACATGGATACCAGAAGAATGTATGCAACTGGTTTACTGATCCTATGGTTGTTTGCCCTGCACTTCTCTATACCACTAATTCTGAGTATATGAATTTACTTTTCCTTTAGATGTCTCAGATATGTTATATTCTATATGACATGAGTTTCCTGATCAAGAATTATAATGGTTTGGTGTTTAACCGTATTGCTTTTTCATAGGTAGAATTCATAGCTCGTAAGTTAGTTTTAATGTGCAGTACACCTCTACCATAATTCTTATCATTACTTTGGCTTATTTAAATATTCACAGAAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</genome_strand>
        <mrna_strand>CTATGGAAGTTGCAGAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332100" ref_strand="+" ref_description="SGN-E332100 [cTOD-16-G8]">
      <seq>attggtgaaggtaataacggggaggaaaaacattgaagaggtccaccaaatagctaggatgttagaggcagagagtgggggaatactagttgctgttgagcgagttaataagggttatgcgatcattgtataccgaggaaagaactacgaaaggcctgcttcattgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtggatctgtttctaagtcttccaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="75347" stop="78709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75647" g_stop="75878" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75879" i_stop="77116" i_length="1238">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77117" g_stop="77176" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="292" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77177" i_stop="77278" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77279" g_stop="77404" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="418" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77405" i_stop="78138" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78139" g_stop="78408" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="688" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E332100" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75647" e_stop="75878"/>
          <exon e_start="77117" e_stop="77176"/>
          <exon e_start="77279" e_stop="77404"/>
          <exon e_start="78139" e_stop="78408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTGCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTGACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTAACTACATAACTCAACATAAGGAATAGCTTATGTGCTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG</genome_strand>
        <mrna_strand>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGGATCTGTTTCTAAGTCTTCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213538" ref_strand="+" ref_description="SGN-E213538 [cLEC-71-G18]">
      <seq>cagagagtgggggaatactagttgctgttgagcgagttaataagggttatgcgatcattgtataccgaggaaagaactacgaaaggcctgcttcattgaggcctcagactcttctaagtaaaagagaagcaatgaagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaacctcgggaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="75415" stop="78863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75715" g_stop="75878" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75879" i_stop="77116" i_length="1238">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77117" g_stop="77176" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="224" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77177" i_stop="77278" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77279" g_stop="77404" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="350" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77405" i_stop="78138" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78139" g_stop="78408" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="620" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78506" g_stop="78563" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="677" r_length="57" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E213538" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75715" e_stop="75878"/>
          <exon e_start="77117" e_stop="77176"/>
          <exon e_start="77279" e_stop="77404"/>
          <exon e_start="78139" e_stop="78408"/>
          <exon e_start="78506" e_stop="78563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTGCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTGACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTAACTACATAACTCAACATAAGGAATAGCTTATGTGCTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTA</genome_strand>
        <mrna_strand>CAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAAC-AACCTCGGGAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265887" ref_strand="+" ref_description="SGN-E265887 [cLEI-11-B16]">
      <seq>tacgaaaggcctgcttcattgaggcctcagactcttgtaagtgaaagagaagcagtggagcgctctatagaggctcagcgacgtcagtcattgaaattacatgtcttaaagcttacacaaaatatagaggctttgcagtcacggttggccaagaatgaggagataagtcatattcagtccccggatatagttgataggcaggtacccgtgatgggcatatcagatgctgcaggtggaactaattaccagtctattgtagcaagtcctattgaggattctggagatgctgcagaagacactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgagggcaaggttgaggctatgggtgatacaattcaacctcagcatcaatctatttcatcaatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="75492" stop="78700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75792" g_stop="75878" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75879" i_stop="77116" i_length="1238">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77117" g_stop="77176" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77177" i_stop="77278" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77279" g_stop="77404" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="273" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77405" i_stop="78138" i_length="734">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78139" g_stop="78400" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="535" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E265887" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75792" e_stop="75878"/>
          <exon e_start="77117" e_stop="77176"/>
          <exon e_start="77279" e_stop="77404"/>
          <exon e_start="78139" e_stop="78400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAGGTAATGTTGTAGTATTTAAGTAGTATTTAAGGTGCCAGTAAATGCATCTAGAAGTTCCCAGATATAATACCTCTTTATTTTAGTAATTGACTTTGGCTTGGTTTTAAAATTTTGAAGTAGATTTGACCCCTTTATCAACTATACTTTTCTCTCCTTCCATTCAAAATCTAACATTCTGATTCTTTTGTGTATCTCAAAAAAAAAAATAAAAAAAATCTAACGTTCTGATTTACCCACTTAAATATGATTGCAGCTATACATCTCACTTTCTACTAAAAGACTATATGAAGAGTGGCAGAATTGAAATGTAACTTATCCCAGCCAATTTGCAGAGTTAGAATGTATTAAAAAACCCAACTTTACTCGAGAAAAGGAAAATCTCCAAAGAGCCTTTCCTCATGTGGTCTGAAGAATAGCCAACTTTGTCACTCAGTATCAAAATCGTATTATTTTGTGTGATCCACTTTTGTTCGTGGAAGTACGTCGAGTCATTTAAACGTCTAGGCATAAACATGGGGGTTTTGGTTAAAAAGGAACCATGGTAAGTTTAGCTGTGAAAGAATCCAACATCTAGCCCATCCTTTTATGGACTCCATTGGAAATTCTTGCACTGACCCAAGTGCGACAACCATATAATTCAACACCGTCTTGCATGTGTAACCTGATTTGGGTGCAATGATAGACTTACAAAGGTTAGCTCTAGTATATGTGAAAGAATTTGAGGCTTTCAGCCCAAAATCATATGGTCATGCTTAGACTTTGGAGTAATCCAAGACCTCGATAGACCACTTTGGAAGCCTTCAACCAATCTAGACATTAACTACATAACTCAACATAAGGAATAGCTTATGTGCTTGGTACTTTAAATTTTTTTTATAATGAGGGCATTTTCCATTTGTTATGTATCTGTTTCTAATTCTTGTTCTCACAACTAGTTAAATTTGCTGGCACTTGTTTCTAGAGATGGTTTTCCTTCTATTATTATCACTGTACTTTTACCATCAAAAAATAGAAAGGGAAATAACAAAAAAGTGTCAGTGTATTTCTGCAACACATTTGAGTTGAGGTGCTGGTGAACCATTTTGTATGACAGTCTGTAAGCTTCTCTAACCTTGTGAGGTTTCTTATTTCTATAGATTTCCATTTATCTCCTCTTCTTTTCACTCGTCTTTCTTTCTGATGCTTCTGCCAAAACTCTTCCACTGCTAATCTTTCTTTTACTTTGTTTTCTGATGCAGTCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTGGTGTGTTATCTTACCTTATTTGAGTTGCTTTGATTTTTGTGTTCCAGTTACTAGCTCATTTCTAAATTATATTGAAATGTTGCACGATTTGCTTTGGTTCAGGCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAGGTGAAAATTAATCCATTTATTGTACAATATTCTGTCACTGTTGAAGGAACAATTATGTTTCGTGTTGCTTCTCATATCTTTGATGCTTGTTGGATTCGAGATCCTTTATCAACCATATATAAGGTACAAGCTAGTGTGTCACCTTCAGAAGTCTTTCAGATACCCCAATAGGCACAAACAACTTGCCTTCAAGTCTTATGCATATTCTTTATGCTTTCATTAAATTTATTAGGACAGCATGTATCGTTAATACCTATGTTTAAGAGATGGATGGATCTGGAGTTTTGTGGACATATAACCACTTGCATCTTATTTTTATGTATGAAAACTTGGTTGTAGAATCCTGTGTCATTGTCTTCTTTAGTCATCATAATTAATGATAAGTCAAAATAGCTGCTGCCCACATGACCCAAATTTGTAATTTAAGGAATTTGATGTTCGTAACCTTTTCTATCTGGGATAGGTTTTTCTGCTTCCCAACTGCATGCTGAATGTCATTGTAAAAACAATCCTTCTAGAATCAAACATTGTTATATGAGTTTCTGTATCATAGAGTACTGAGCAAAATTGAAAAAAAAGGCTCTGCTGATTATGAAATATGTTCAAAATGGTTGATATCAATCAATGGTTAAATGTATGTGGTCCTCAAACTCTGTTGTATCATTTCTTGCACTTTTTATTATTTTGCAGTGTGTATTGATAGAGAGAGAAGCTTATTTAGCTTTTATATTCAGGATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGT</genome_strand>
        <mrna_strand>TACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTGTAAGTGAAAGAGAAGCAGTGGAGCGCTCTATAGAGGCTCAGCGACGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG......................................................................................................GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210098" ref_strand="+" ref_description="SGN-E210098 [cLEC-40-O8]">
      <seq>cactgaccccagttctcagaaagaattatcaaatgatttctcggacacagaccacgattcgcagcaagaatttccaattaatccgtttttccaatatgaaggcaaggatgaggctatgggtgatacaattcaacctcagcattaatctatttcatcaatcacagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattccgcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatgcacttttctgagaccagaagtttcaacaaacctcgggaagttaacaatgaaatggaggtgtctcaacctgcttctgcaaaacctcagcaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="77862" stop="78983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78162" g_stop="78408" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.071" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78506" g_stop="78683" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="425" r_length="178" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E210098" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78162" e_stop="78408"/>
          <exon e_start="78506" e_stop="78683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGC</genome_strand>
        <mrna_strand>CACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAAGGCAAGGATGAGGCTATGGGTGATACAATTCAACCTCAGCATTAATCTATTTCATCAATCACAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCCGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATGCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATGAAATGGAGGTGTCTCAACCTGCTTCTGCAAAACCTCAGCAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550165" ref_strand="+" ref_description="SGN-E550165 [TUS-5-D6]">
      <seq>tcgcaccagatcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgagacnnncccgatagccaaagggaaactatgtcatatctcctgaacttatatcagcnatcagacttgaatgtggcttgcagtccaacatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78014" stop="79879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78311" g_stop="78408" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78506" g_stop="78737" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="331" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="462" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79372" g_stop="79579" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="669" r_length="207" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E550165" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78311" e_stop="78408"/>
          <exon e_start="78506" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCA-ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAG-CAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATA</genome_strand>
        <mrna_strand>TCGCACCAGATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAGACNNNCCCGATAGCCAAAGGGAAACTATGTC-ATATCTCCTGAACTTATATCAGCNATCAGACTTGAATGTGGCTTGCAGTCCAAC-ATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389771" ref_strand="+" ref_description="SGN-E389771 [TUS-4-D6]">
      <seq>atcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcanaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacattgatatgggaagtgcttcataggcaacaaccttgggtaaagggaagtaccagttggtttttttaggtcaagccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78019" stop="79953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78319" g_stop="78408" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78506" g_stop="78737" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="322" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="453" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79372" g_stop="79653" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="732" r_length="279" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E389771" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78319" e_stop="78408"/>
          <exon e_start="78506" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTG</genome_strand>
        <mrna_strand>ATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCANAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACATTGATATGGGAAGTGCTTCATAGGCAACAACCTTGGGTAAAGGGAAG-TACCAGTTGGTTTTTTTAGG-TC-AAGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235567" ref_strand="+" ref_description="SGN-E235567 [cLED-11-H6]">
      <seq>tcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78020" stop="79856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78320" g_stop="78408" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78506" g_stop="78737" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="321" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="452" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79372" g_stop="79556" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="637" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E235567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78320" e_stop="78408"/>
          <exon e_start="78506" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATG</genome_strand>
        <mrna_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243538" ref_strand="+" ref_description="SGN-E243538 [cLED-34-A13]">
      <seq>tcaaagagtcgaaaagtatgttcaatgtgaatgtggatcaagaaacattcggcagtgcagtgagtgaatctgtttctaagtcttccaggggagaagttaagatccacttttctgagaccagaagtttcaacaaacctcgggaagttaacaataaaatggaggtgtctcaacctcctcctgtaaaacctcaacaaacacttagatccacccggagtaggtccgaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78020" stop="79833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78320" g_stop="78408" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.071" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78506" g_stop="78737" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="321" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="452" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79372" g_stop="79533" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="614" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E243538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78320" e_stop="78408"/>
          <exon e_start="78506" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGGGTAAAGTTCATTTTCTCTTCACAACTATTACACTATTTCTTTTCCATCACAAGGTTAATGGTTAAAAAAATTCGGATGTCTTTCTCATTGATTCTAGGGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTT</genome_strand>
        <mrna_strand>TCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG.................................................................................................GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735817" ref_strand="+" ref_description="SGN-E735817 [LC03BA07]">
      <seq>cctaagggatgtctaccagaagagtacagctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaattacattttatgtaaatagaatttcaattcaaaatacgcatctattaccatgtcatctttttaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78336" stop="80293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78636" g_stop="78737" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="233" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79372" g_stop="79993" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="852" r_length="619" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E735817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78636" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCC</genome_strand>
        <mrna_strand>CCTAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAA-TTACATTTTATGTAAATAGAA-TTTCAATTC-AAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347148" ref_strand="+" ref_description="SGN-E347148 [cTOF-25-M13]">
      <seq>ggatgtctaccagaagagtaccgctttccaacagggagaggctgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagtngcttcataggcaacaaccttggtaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78342" stop="79917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78642" g_stop="78737" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="227" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79372" g_stop="79617" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="473" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E347148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78642" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGG</genome_strand>
        <mrna_strand>GGATGTCTACCAGAAGAGTACCGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTNGCTTCATAGGCAACAACCTTGGTAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247168" ref_strand="+" ref_description="SGN-E247168 [cLEF-46-N1]">
      <seq>atgtctaccagaatagtacagctttccaacagggagagggtgcttctcagaaaacaagccctcaagatgaagaagcaaccagtgcttgctgttgggaggagcaatattgttactggagttgcaaaaaatatcaaagaacactttaagaagtatcctcttgcgattgtgaatgtcaaaggaagggcaaaagggacttcagttagggaggtggtttttaagctggagcaagctacaggtgctgttcttgtttctcaagagccaagcaaagtcatattgtatagaggttggggaccaggtggagagcgtggtgcttctaatggaaatgacaccagtaattcgaaaaacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="78344" stop="79938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78644" g_stop="78737" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79154" g_stop="79284" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="225" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79372" g_stop="79638" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="492" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E247168" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78644" e_stop="78737"/>
          <exon e_start="79154" e_stop="79284"/>
          <exon e_start="79372" e_stop="79638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTGGTAATGAGAACCTCTTTTATTTTCTCTATATTCCTCCTACTGTGTTGTAGTTTGTTGTATAGAGTTGCTAGTTTTGAAAACAAAGAATTAACCTTTTGCCAACTGCGGGGCATTTTCATCTTAAGCGAGATGACACTGCAAGCTTTAGCTTTCACTGAGTTGGGTATTCACTCAAATCTTCATTGTTATGAGATTTGGTTTTGGGATATTAGAATATTTCACTTGTGGTGGACCTGATGGTAAACTGGAATGCATTTAGTTGTAGTTTTCACCTTGAAAGAGCAGGATAAATTTATTTGATGCGATTGGGAATTCCGCGTTTTCTGCATATCATGCTGTTGATCTTTCTCCCCACCCTAAGCAGTCTTGGCGACTCCTGACCTTAAACCTTGTCTTCCTTTGCACCTTCATATCAGGGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAGGTTTGTTTATTGGCTATTTTAGTTGCTCGTTTAATTTGGCAGCACCCCCATATTCACTGAAAGCCTATCTTTTGACACTTACTGCAGCAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTT</genome_strand>
        <mrna_strand>ATGTCTACCAGAATAGTACAGCTTTCCAACAGGGAGAGGGTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG.......................................................................................CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550416" ref_strand="+" ref_description="SGN-E550416 [TUS-5-D6](-)">
      <seq>aacagcagagagcaaaaggaactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagacggatgcacattgcacatgttcctttagattacatactggttttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="79189" stop="80356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79489" g_stop="80056" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E550416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79489" e_stop="80056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGA</genome_strand>
        <mrna_strand>AACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACGGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290369" ref_strand="+" ref_description="SGN-E290369 [cLES-20-G4]">
      <seq>aactaatgtcaatatctcctgaacttatatcagcaatcagacttgaatgtggcttgcagtccaacaatgatatggaagttgcttcataggcaacaaccttggtaaaagggaagttaccagttggtttttttaggttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="79208" stop="80247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79508" g_stop="79947" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E290369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79508" e_stop="79947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTC</genome_strand>
        <mrna_strand>AACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379110" ref_strand="+" ref_description="SGN-E379110 [TUS-1-G22](-)">
      <seq>ttcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttacgttcatgacgaaacaagtatgtaaacatatccgttcaccggaaatctaatatatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="79342" stop="80423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79642" g_stop="80123" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E379110" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79642" e_stop="80123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACAT</genome_strand>
        <mrna_strand>TTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTACGTTCATGACGAAACAAGTATGTAAACATATCCGTTCACCGGAAATCTAATATATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379237" ref_strand="+" ref_description="SGN-E379237 [TUS-1-G22]">
      <seq>tcaaagccttgagctctcatctaacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcatgacaaaacaagtatgtaaacatataaattcaccaaaaatctaatatatgacattgtctttatgacattctttttaatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="79343" stop="80452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79643" g_stop="80159" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E379237" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79643" e_stop="80159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGG</genome_strand>
        <mrna_strand>TCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389997" ref_strand="+" ref_description="SGN-E389997 [TUS-4-D6](-)">
      <seq>taacaacgcttttgtgcacccgatgatggtctctgaattgtctgtgcatgcatctaacaattgctttcttggtgtggagttggaatctaaattgtgcatcacctctcccatacaaatgaaagggaatcggcttccaccaaacttctctccttgcagaatttcagtagctggaataagttccacatgataattcctgtctcatggtcattgtgcatcaactggagagattctgtatgtcagttaagtggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttctttagaaacaaaaaaggctaatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcgagacaaaacaagtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="79364" stop="80386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79664" g_stop="80086" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E389997" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79664" e_stop="80086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGT</genome_strand>
        <mrna_strand>TAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCTTTAGAAACAAAAAAGGCTAATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCGAGACAAAACAAGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277213" ref_strand="-" ref_description="SGN-E277213 [cLEL-3-A5]">
      <seq>ggcgctgctaatttacattttatgtaaatagaagtttcaattcaaaaatacgcatctattaccatgtcatctttttaattttccctagaaacaaaaaagactgatgcacattgcacatgttcctttagattacatactggttttagattagttatgttcatgacaaaacaagtatgtaaacatataaattcaccaaaaatctaatatatgacattgtctttatgacattgctttttaatcaacactaggggcccgtttggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="79610" stop="80475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79910" g_stop="80174" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="267" polyA_stop="283"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E277213" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79910" e_stop="80174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATT-CTTTTTAATCAACACTAGGGGCCCGTTTGGACATAA</genome_strand>
        <mrna_strand>GGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTGCTTTTTAATCAACACTAGGGGCCCGTTTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318756" ref_strand="+" ref_description="SGN-E318756 [cTOB-11-E17]">
      <seq>gtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgnccatggtttggtagttgaaagatgctttaatatttgtcatggtgcgttaaaaaagatctacactttggcaattccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="82929" stop="80818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82629" g_stop="82358" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81118" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="559" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E318756" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82629" e_stop="82358"/>
          <exon e_start="81407" e_stop="81118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTG-CCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATTT</genome_strand>
        <mrna_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGNCCATGG-TTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGGTGCGTTAAAAAAGATCTACACTTTGGCAATTCCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282301" ref_strand="+" ref_description="SGN-E282301 [cLES-4-P12]">
      <seq>aaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="82856" stop="80827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82556" g_stop="82358" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81119" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="485" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E282301" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82556" e_stop="82358"/>
          <exon e_start="81407" e_stop="81119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATT</genome_strand>
        <mrna_strand>AAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218352" ref_strand="+" ref_description="SGN-E218352 [cLEL-18-D13](-)">
      <seq>tagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgttaaataagatctacactttggcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="82729" stop="80827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82429" g_stop="82358" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81128" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="351" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="369"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E218352" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82429" e_stop="82358"/>
          <exon e_start="81407" e_stop="81128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</genome_strand>
        <mrna_strand>TAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318864" ref_strand="+" ref_description="SGN-E318864 [cTOB-11-E21]">
      <seq>gtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcangacgcanagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatcattgccatggttttggtagttgaaagatgctttaatatttgtcatgttgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="82929" stop="80850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82629" g_stop="82358" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81150" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="527" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E318864" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82629" e_stop="82358"/>
          <exon e_start="81407" e_stop="81150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTT</genome_strand>
        <mrna_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCANGACGCANAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318542" ref_strand="+" ref_description="SGN-E318542 [cTOB-10-F18]">
      <seq>gtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtgtgctgattgataccatgggaataaattctgagaagtaccagaagtatgaatgtgggaggggaaagcaggactcaaagcttccctatatccagccactttttattatcaaacttgtgtacaactattgttacattgtaggcccaatgggtaatttatgtttcagagctggtacatctaatgtcttaatgtttccttacattatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="82929" stop="80902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82629" g_stop="82358" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81202" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="475" r_length="206" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E318542" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82629" e_stop="82358"/>
          <exon e_start="81407" e_stop="81202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCA</genome_strand>
        <mrna_strand>GTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTGATTGATACCATGGGAATAAATTCTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACTCAAAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTACAACTATTGTTACATTGTAGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740522" ref_strand="+" ref_description="SGN-E740522 [LC21DB07]">
      <seq>cgatcaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttagaccagagctagaaaggaggatcagggagcatgcagagagggagctacaacaggcagctgctgcttgattcttttatgagtttgctgtttgataccatgggaataaattttgagaagtaccagaagtatgaatgtgggaggggaaagcaggacgcagagcttccctatatccagccactttttattatcaaacttgtgtagaactattgttacattgttggcccaatgggtaatttatgtttcagagctggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83134" stop="80933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82836" g_stop="82358" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81407" g_stop="81238" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="646" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="659"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E740522" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82836" e_stop="82358"/>
          <exon e_start="81407" e_stop="81238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAGGTTGGTTCTTAAACTTTTGTTACATTTACATTGTAGTGTTTGATACTTGATAGTAACCATGAATCATCATCTTAATAACAACATTCATCTAAAAATTCGTTGCATGCTGTAAACTTTAATAAAGTGAAATTGGTTTCCAAACTCTTTCTAGTTCCCTTTTTTTGTTCGGATAATGGGTCTTTTTTTATCCTCTTGTTGTTTGGATTATCAAAGATCATAGTAACATGTACAAAATACTCCAAGCCCAAGGTACACCTCTCAGGAACTTTATCTCCTGCCCTTTTGTAATACTGCTGACCTCTCGCTAGGTCAATGCAACTTCAATTATTTCTGTCATGACAAAGAATTACCAAAATTTCCTTCCAACCGGACTCTTCTTTTGACCAATATAGGAGAAACCAAAAAAAAAAAAAAAAAAGAAAGGAGCAGGAACAGTCATAAAACTGGCGACTTTAGTGGATGTTGCATGACAACCCTGTGCATGGGAATGTGTTCTTTGATCACTGAAATTGAGGGACACGGCTCTCCAAAAATTAAGAAATTAATGAAAAAAAGCTTGAAAGGTGTGCCTGTAGTTATAATCTAATTGAATATAGCAAAATGATCTAAACAGCTCTGTGATCTTCAACATTTTGCATATTCCATCTTCATGTATGAAGTTAAATATACTTGTCAATAGTCATCCTATTGAATTGCTACACAGAGTCTCTGTAACCAGCCCTGCCTTTGACAAATTTAAGCACTGATGTCTAATCTTGAAGCATACCGACTTCACCACTCTGATCATTGTTGGTACAATGCTATAATAGATTGATTCCTCCCCACCACCCCTGCCTTCCCTATTGGTCATGTCCCTCAAATATTGATTTTCATACTTGCTGAATAATTAAATTACTTGTATGTATCACGGCATGGCTATTTCATAATCGTTTCATGTCTCTGCCTTTCAGTTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTG</genome_strand>
        <mrna_strand>CGATCAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTA-GA-CCAGAGCTAGAAAGGAGGATCAG-GGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268225" ref_strand="+" ref_description="SGN-E268225 [cLEM-3-A4]">
      <seq>atgagtctttcattgaaggagctgctacagaggcactgaggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgtttcactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgatgctgtaattgtcatggacaagttaactgatgttgtctatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaatgcacacgatggctttggatgatcatggttagaatgaacggtggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83194" stop="82140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82894" g_stop="82440" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E268225" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82894" e_stop="82440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</genome_strand>
        <mrna_strand>ATGAGTCTTTCATTGAAGGAGCTGCTACAGAGGCACTGAGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTTCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGATGCTGTAATTGTCATGGACAAGTTAACTGATGTTGTCTATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAATGCACACGATGGCTTTGGATGATCATGGTTAGAATGAACGGTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698922" ref_strand="+" ref_description="SGN-E698922 [FA08AB02]">
      <seq>gagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgagtatttcattgaaggagctgctagagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacacccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83443" stop="82168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83143" g_stop="82468" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E698922" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83143" e_stop="82468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACA-CCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGC</genome_strand>
        <mrna_strand>GAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699213" ref_strand="+" ref_description="SGN-E699213 [FA09AD09]">
      <seq>caaacaaggnaaaccaagattgaagcctccatctctagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacactagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgctttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgactatttccttgaacgagctgctacagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83414" stop="82512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83114" g_stop="82812" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E699213" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83114" e_stop="82812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACC</genome_strand>
        <mrna_strand>CAAACAAGGNAAACCAAGATTGAAGCCTCCATCTCTAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACACTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGCTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGACTATTTCCTTGAACGAGCTGCTACAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700651" ref_strand="+" ref_description="SGN-E700651 [FA13DA06]">
      <seq>ttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83790" stop="82599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83490" g_stop="82899" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E700651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83490" e_stop="82899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGA</genome_strand>
        <mrna_strand>TTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262570" ref_strand="+" ref_description="SGN-E262570 [cLEG-63-I24]">
      <seq>agacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83442" stop="82658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83142" g_stop="82958" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E262570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83142" e_stop="82958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAAT</genome_strand>
        <mrna_strand>AGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202362" ref_strand="+" ref_description="SGN-E202362 [cLEC-6-B22]">
      <seq>tcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcatgagtggggatgagagctagagctgcttatatttatatcacgggagagtatgtgaatgaaaggttgagccttcaaaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattctgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83778" stop="82695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83478" g_stop="82995" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E202362" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83478" e_stop="82995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGG</genome_strand>
        <mrna_strand>TCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCATGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCACGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAAAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTCTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702317" ref_strand="+" ref_description="SGN-E702317 [FA18BE11]">
      <seq>gattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85252" stop="82727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84952" g_stop="84922" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83027" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="838" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E702317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84952" e_stop="84922"/>
          <exon e_start="83833" e_stop="83027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACA</genome_strand>
        <mrna_strand>GATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739436" ref_strand="+" ref_description="SGN-E739436 [LC17BG12]">
      <seq>gagggcagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85306" stop="82738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85008" g_stop="84922" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83038" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="882" r_length="796" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E739436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85008" e_stop="84922"/>
          <exon e_start="83833" e_stop="83038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAA</genome_strand>
        <mrna_strand>GAG-GGCAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736642" ref_strand="+" ref_description="SGN-E736642 [LC06CD03]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaacccagattgaagcctccatttccagctaatgcaggactatatggatgtccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85306" stop="82749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85006" g_stop="84922" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83049" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="869" r_length="784" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E736642" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85006" e_stop="84922"/>
          <exon e_start="83833" e_stop="83049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAAC</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGC-AACCCAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737554" ref_strand="+" ref_description="SGN-E737554 [LC10BC05]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactccataagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagaagcttgagggcaaacaaggcaaaacaagattgaagcctccatttccagctaatgcaggactatatggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85306" stop="82754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85006" g_stop="84922" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83053" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="866" r_length="781" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E737554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85006" e_stop="84922"/>
          <exon e_start="83833" e_stop="83053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTC</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTCCATAAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAAGCTTGAGGGCAAACAAGGCAAAACAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736236" ref_strand="+" ref_description="SGN-E736236 [LC04DE07]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85306" stop="82782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85006" g_stop="84922" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83082" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="837" r_length="752" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E736236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85006" e_stop="84922"/>
          <exon e_start="83833" e_stop="83082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATT</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736700" ref_strand="+" ref_description="SGN-E736700 [LC06DD02]">
      <seq>gaggcagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85304" stop="82812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85006" g_stop="84922" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83112" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="807" r_length="722" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E736700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85006" e_stop="84922"/>
          <exon e_start="83833" e_stop="83112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAA</genome_strand>
        <mrna_strand>GAGGCAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555478" ref_strand="+" ref_description="SGN-E555478 [cTSC-4-B17]">
      <seq>tttttcttatttttatgagaaagagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85324" stop="82850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85024" g_stop="84922" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83150" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="789" r_length="686" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E555478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85024" e_stop="84922"/>
          <exon e_start="83833" e_stop="83150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGG--AAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGT</genome_strand>
        <mrna_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335056" ref_strand="+" ref_description="SGN-E335056 [cTOE-9-J17]">
      <seq>tcagcgttctagtgaaagcaggggccactatggtaggttatttagcactcaggctgcatcaacctgctagcactccccaacctacaccccccacccccacctcccgagaggacctcacttttggtggccttaaagcagaggatcgtattttcaccaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtaccagaacaaaagatcttgtcatcaagggttctgacttggatcgtgaatgaaatgaagaaatctggtcttcgaggacctggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcangagtggggatgagagctagagctgcttatatttatatcanggggagagtatgtgaatgaaaggttgagccttcagaaggctagacangaagcctatgaagctgggattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="84089" stop="82924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83789" g_stop="83224" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E335056" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83789" e_stop="83224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAA-CTGCTAGCACTCCCCAACCTACA-CCCCCACCCCCACCTCCCGAGAGGA-CTCAC-TTTGGTGGCCTTAAAGATGAGGATCGTATTTTCA-CAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTA-CAGAACAAAAGATCTTGTCATCAAGGGTTCTGAC-TGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCA-GGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCT-GGATTGT</genome_strand>
        <mrna_strand>TCAGCGTTCTAGTGAAAGCAGGGGCCACTATGGTAGGTTATTTAGCACTCAGGCTGCATCAACCTGCTAGCACTCCCCAACCTACACCCCCCACCCCCACCTCCCGAGAGGACCTCACTTTTGGTGGCCTTAAAGCAGAGGATCGTATTTTCACCAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACCAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACCTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCANGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCANGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACANGAAGCCTATGAAGCTGGGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339468" ref_strand="+" ref_description="SGN-E339468 [cTOF-4-H14]">
      <seq>ttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85296" stop="82930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84996" g_stop="84922" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83230" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="679" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E339468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84996" e_stop="84922"/>
          <exon e_start="83833" e_stop="83230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTG</genome_strand>
        <mrna_strand>TTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332681" ref_strand="+" ref_description="SGN-E332681 [cTOD-18-N24]">
      <seq>agctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaagctgtctgattgcangagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaaggtgagccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85266" stop="82960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84966" g_stop="84922" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83260" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="619" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E332681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84966" e_stop="84922"/>
          <exon e_start="83833" e_stop="83260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTC</genome_strand>
        <mrna_strand>AGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAAGCTGTCTGATTGCANGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAAGGTGAGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314111" ref_strand="+" ref_description="SGN-E314111 [cTOA-19-H18]">
      <seq>gatcgtattctcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaataaatctggtcttccatgacgtggtggtgctggagttccatctggcctcaaatggtccttcatgccaaagacaacaaatggccggccttcatatcttgatgtcaatgctgatgaaagtgaacctggaacctgttaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgctagagtggggatgacagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="83953" stop="83013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83653" g_stop="83313" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E314111" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83653" e_stop="83313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAG</genome_strand>
        <mrna_strand>GATCGTATTCTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAATAAATCTGGTCTTCCATGACGTGGTGGTGCTGGAGTTCCATCTGGCCTCAAATGGTCCTTCATGCCAAAGACAACAAATGGCCGGCCTTCATATCTTGATGTCAATGCTGATGAAAGTGAACCTGGAACCTGTTAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCTAGAGTGGGGATGACAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697911" ref_strand="+" ref_description="SGN-E697911 [FA04CG02]">
      <seq>caatattcatggcacctataaagggccttccctctaaacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagatcggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatccatgcggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="84136" stop="83070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83833" g_stop="83370" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="476" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E697911" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83833" e_stop="83370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAAT-CATGCGGCA</genome_strand>
        <mrna_strand>GCACCTATAAAGGGCCTTCCCTCTAAACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATCGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCCATGCGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323796" ref_strand="+" ref_description="SGN-E323796 [cTOC-5-H20]">
      <seq>cctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacacaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgnccttcatatcttgtcgtcaatgctgatgaaagtgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85285" stop="83101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84985" g_stop="84922" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83401" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="497" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E323796" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84985" e_stop="84922"/>
          <exon e_start="83833" e_stop="83401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTG</genome_strand>
        <mrna_strand>CCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACACAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGNCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284092" ref_strand="+" ref_description="SGN-E284092 [cLER-13-B11]">
      <seq>tcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggttcagaacaaaagatcttgtcatcaagggttctgactggatcgggaatgaaatgaagaaatctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85257" stop="83214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84957" g_stop="84922" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83514" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="356" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E284092" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84957" e_stop="84922"/>
          <exon e_start="83833" e_stop="83514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCT</genome_strand>
        <mrna_strand>TCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTTCAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGGGAATGAAATGAAGAAATCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335923" ref_strand="+" ref_description="SGN-E335923 [cTOE-6-G19]">
      <seq>tcaccctaatctgctggagaatcagctggatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgacgatcggatcttcacaaatctctacggattgcatgacccttacctcaaaagtgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="85289" stop="83297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84989" g_stop="84922" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83833" g_stop="83597" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="305" r_length="237" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E335923" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84989" e_stop="84922"/>
          <exon e_start="83833" e_stop="83597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATG</genome_strand>
        <mrna_strand>TCACCCTAATCTGCTGGAGAATCAGCTGGATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGACGATCGGATCTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAAGTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337540" ref_strand="+" ref_description="SGN-E337540 [cTOE-11-P6]">
      <seq>ccgtttattaatttattttaattataatttttcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88370" stop="93761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88670" g_stop="88990" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="556" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93461" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="584" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E337540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88670" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTG</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336569" ref_strand="+" ref_description="SGN-E336569 [cTOE-4-O13]">
      <seq>ccgtttattaatttattttaattataatttgtcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcaaaaacatatttctgcatggacaaaggtgttacttcttgggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88370" stop="92885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88670" g_stop="88990" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92724" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="496" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E336569" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88670" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGA</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTGTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAAAAACATATTTCTGCATGGACAAAGGTGTTACTTCTTGGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306413" ref_strand="+" ref_description="SGN-E306413 [cLEX-13-H16]">
      <seq>atcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88454" stop="89945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88754" g_stop="88990" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="322" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E306413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88754" e_stop="88990"/>
          <exon e_start="89561" e_stop="89645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGA</genome_strand>
        <mrna_strand>ATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726468" ref_strand="+" ref_description="SGN-E726468 [LA11DF03]">
      <seq>cgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaatctgattttgtataaaactggaatcaatttccaaagctgctttgtgaagttcaatcccagtcgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88466" stop="94387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88766" g_stop="88990" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="338" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="388" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="460" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="521" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94087" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="902" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E726468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88766" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGA</genome_strand>
        <mrna_strand>CGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAAT-CTGATTTTGTATAAAACTGGAATCAATTTCC-AAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722067" ref_strand="+" ref_description="SGN-E722067 [FC16AD09]">
      <seq>ggccgaattgcttttccgaagttgccttggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcaaagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcaaaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88498" stop="94147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88771" g_stop="88990" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="333" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="383" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="455" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="516" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93850" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="662" r_length="146" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E722067" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88771" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGT</genome_strand>
        <mrna_strand>GGCCGAATTGCTTTTCCGAAGTTGCCTTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAAAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAAAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296618" ref_strand="+" ref_description="SGN-E296618 [cLET-39-J10]">
      <seq>attttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88474" stop="93085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88774" g_stop="88990" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="330" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="380" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="452" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E296618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88774" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG</genome_strand>
        <mrna_strand>ATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728281" ref_strand="+" ref_description="SGN-E728281 [LA17BB12]">
      <seq>gttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaagctgctttgtgaagttcatcccagtcgtctgacgtgttataatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88491" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88791" g_stop="88990" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="313" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="363" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="435" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="496" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94102" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="891" r_length="395" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="892" polyA_stop="904"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E728281" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88791" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>GTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCC-AAAGCTGCTTTGTGAAGTTC-ATCCCAGTCGTCTGACGTGTT-ATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305564" ref_strand="+" ref_description="SGN-E305564 [cLEX-14-M7]">
      <seq>tggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggaaaaaaacagactattactaggggggagattaaggaaacccccgccgacttgtgaggctcggacatcttatacatgctatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88498" stop="94077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88798" g_stop="88990" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="306" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="356" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="428" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="489" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93777" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="562" r_length="73" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E305564" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88798" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAA</genome_strand>
        <mrna_strand>TGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAAAAAAACAG..................................................................................................................................................................................................................ACTATTACTAGGGGGGAGATTAAGGAAACCCCCGCCGACTTGTGAGGCTCGGACATCTTATACATGCTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733461" ref_strand="+" ref_description="SGN-E733461 [LB10AC11]">
      <seq>ggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaaatcatttccaaagctgctttgtgaagntcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88499" stop="94373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88799" g_stop="88990" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="305" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="355" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="427" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="488" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94072" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="855" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="872"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E733461" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88799" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCA</genome_strand>
        <mrna_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAAATCATTTCC-AAAGCTGCTTTGTGAAGNTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725832" ref_strand="+" ref_description="SGN-E725832 [LA05DF10]">
      <seq>gttaacagaatcacatttttgactaaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgnatactatggaggagattaaaggaacacagccacatgtgatgctcggacatctatacatgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88500" stop="94076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88800" g_stop="88990" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="304" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="354" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="487" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93776" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="556" r_length="69" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E725832" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88800" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGA</genome_strand>
        <mrna_strand>GTTAACAGAATCACATTTTTGACTAAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGNATACTATGGAGGAGATTAAAGGAAC-ACAGCC-ACATGTGATGCTCGGACATC-TATACATGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290759" ref_strand="+" ref_description="SGN-E290759 [cLET-10-N11]">
      <seq>ttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgggattctgatctcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88501" stop="94195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88801" g_stop="88990" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="303" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="486" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93895" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="677" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E290759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88801" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCT</genome_strand>
        <mrna_strand>TTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGGGATTCTGATCTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295179" ref_strand="+" ref_description="SGN-E295179 [cLET-20-L7]">
      <seq>taacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88502" stop="89268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88802" g_stop="88968" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E295179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88802" e_stop="88968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</genome_strand>
        <mrna_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347108" ref_strand="+" ref_description="SGN-E347108 [cTOF-25-N2]">
      <seq>aacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaacccatccattacattgttgtgattctgatcttcgctagtgagattgggtgggtgaataacagtgcaattatgcttaactggtggtgatgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88503" stop="94253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88803" g_stop="88990" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="301" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="351" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="484" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93953" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="733" r_length="249" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E347108" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88803" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGC-TAACTGTTGTGTGATGCATCT</genome_strand>
        <mrna_strand>AACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAAACCCATCCATTACATTGTTGTGATTCTGATCTTCGCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTTAACTGGTG-GTGATGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370217" ref_strand="+" ref_description="SGN-E370217 [TUS-28-C10]">
      <seq>acagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88504" stop="94182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88804" g_stop="88990" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="300" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="350" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="483" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93882" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="661" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E370217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88804" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGAT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270741" ref_strand="+" ref_description="SGN-E270741 [cLEM-6-D6]">
      <seq>acagaatcacatttttgactcaatcggaaagtcggagcagaagacgagacaacggagcaactactaccggaatccgccatgagaactcttcaagcttccacctactacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttgtactcatcgctgcctcaccggatccaaaatggagccatgatagaaatctgttgaaatcatgatgaaattgtaggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcatcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88504" stop="94105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88804" g_stop="88990" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="300" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="350" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="483" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93805" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="584" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E270741" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88804" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAGACGAGACAACGGAGCAACTACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTACTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTGTACTCATCGCTGCCTCACCGGATCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATGATAGAAATCTGTTGAAATCATGATGAAATTGTAGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCATCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327034" ref_strand="+" ref_description="SGN-E327034 [cTOC-18-B19]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagaagcacaatccagttctgatgtgacatgttgctgaaaccccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88506" stop="94165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88806" g_stop="88990" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93865" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="642" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E327034" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88806" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATC</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAAGCACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300501" ref_strand="+" ref_description="SGN-E300501 [cLET-45-J2]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcgacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattctgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgttgttgttgcacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88506" stop="94148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88806" g_stop="88990" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93848" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="625" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E300501" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88806" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACAT</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCGACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTCTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTGTTGTTGCACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283989" ref_strand="+" ref_description="SGN-E283989 [cLER-13-J10]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88506" stop="94079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88806" g_stop="88990" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93779" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="556" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E283989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88806" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACA</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246889" ref_strand="+" ref_description="SGN-E246889 [cLEF-41-H15]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88506" stop="93044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88806" g_stop="88990" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92744" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="380" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E246889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88806" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGC</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358679" ref_strand="+" ref_description="SGN-E358679 [cLHT-22-L21]">
      <seq>gaatcacatttttgactcaatcggaaagtaggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88507" stop="94075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88807" g_stop="88990" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="297" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="480" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="551" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E358679" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88807" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATG</genome_strand>
        <mrna_strand>GAATCACATTTTTGACTCAATCGGAAAGTAGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327442" ref_strand="+" ref_description="SGN-E327442 [cTOC-19-F7]">
      <seq>tcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaacccatccattacattgttgtgattctgatctcgtctagtgagattgggtggggtgataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88510" stop="94273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88810" g_stop="88990" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="294" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="344" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="416" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="477" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93973" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="745" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E327442" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88810" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACT</genome_strand>
        <mrna_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAA-CCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGGTGATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288876" ref_strand="+" ref_description="SGN-E288876 [cLES-17-J20]">
      <seq>tcacatttttgactcaatcgaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaagagtgtcactgcatgctttttctgacccctgataatgattttgctggagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88510" stop="93790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88810" g_stop="88990" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="293" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="343" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="415" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93490" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="472" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E288876" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88810" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGA</genome_strand>
        <mrna_strand>TCACATTTTTGACTCAATC-GAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284249" ref_strand="+" ref_description="SGN-E284249 [cLER-16-O24]">
      <seq>tttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88517" stop="93038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88817" g_stop="88990" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="287" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="337" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92738" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="363" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E284249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88817" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAG</genome_strand>
        <mrna_strand>TTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297608" ref_strand="+" ref_description="SGN-E297608 [cLET-28-N4]">
      <seq>tgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88519" stop="89948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88819" g_stop="88990" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89648" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="260" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E297608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88819" e_stop="88990"/>
          <exon e_start="89561" e_stop="89648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAA</genome_strand>
        <mrna_strand>TGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292908" ref_strand="+" ref_description="SGN-E292908 [cLET-11-B6]">
      <seq>agaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88542" stop="94117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88842" g_stop="88990" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="262" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="312" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="445" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="93817" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="558" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E292908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88842" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGAT</genome_strand>
        <mrna_strand>AGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555128" ref_strand="+" ref_description="SGN-E555128 [cTSC-6-I10]">
      <seq>ttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88629" stop="94371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88929" g_stop="88990" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="175" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="225" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="297" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="358" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94071" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="725" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E555128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88929" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTC</genome_strand>
        <mrna_strand>TTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350998" ref_strand="+" ref_description="SGN-E350998 [cTOS-6-G3]">
      <seq>ttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactggtgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88635" stop="94335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88935" g_stop="88990" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="169" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="219" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="291" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94043" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="691" r_length="339" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E350998" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88935" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATC</genome_strand>
        <mrna_strand>TTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGGTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370216" ref_strand="+" ref_description="SGN-E370216 [TUS-28-C10](-)">
      <seq>cttcttctactcatcgctgcctcaccgtagccaaaatggagccatcaaagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttaaaaattcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="88655" stop="94362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88955" g_stop="88990" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89561" g_stop="89673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="149" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="199" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="271" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="332" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93705" g_stop="94062" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="690" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="711"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E370216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88955" e_stop="88990"/>
          <exon e_start="89561" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTT</genome_strand>
        <mrna_strand>CTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAAAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697126" ref_strand="+" ref_description="SGN-E697126 [LH_Ea10O20](-)">
      <seq>gcagtatgttcgcaggtcagaaacatatttttgcatggacaaaggtgttacttttgtggtcatcaagggtttggcagagcacaaggatacattgggtggtccactttgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttttggaattgtccgtgtgtaccaatgagagagaggaaggagtgtccctgcatgctttttttgacccctgataatgattttgctggagaagaacagccgattcctatggaggagattaaggaaacaacagccaacatgggatgttcggacattttatacatgttatgaacattacgtttttgttgtacatgtatatttgagtagtagatgaagagcaacaatccagttttgatgtgacatgttgctgaaacgccatcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="89307" stop="94172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89607" g_stop="89673" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="117" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="189" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93705" g_stop="93866" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="412" r_length="162" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="447"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E697126" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89607" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</genome_strand>
        <mrna_strand>GCAGTATGTTCGCAGGTCAGAAACATATTTTTGCATGGACAAAGGTGTTACTTTTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGGTCCACTTTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTTTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCCCTGCATGCTTTTTTTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................CCGATTCCTATGGAGGAGATTAAGGAAACAACAGCCAACATGGGATGTTCGGACATTTTATACATGTTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTAGTAGATGAAGAGCAACAATCCAGTTTTGATGTGACATGTTGCTGAAACGCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693286" ref_strand="+" ref_description="SGN-E693286 [LH_Ea10O20]">
      <seq>gcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgttatgaacattacgtttttgttgtacatgtatatttgagtagtagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="89307" stop="94172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89607" g_stop="89673" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92533" g_stop="92582" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="117" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="189" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93705" g_stop="93866" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="412" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="445"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E693286" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89607" e_stop="89673"/>
          <exon e_start="92533" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="93866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</genome_strand>
        <mrna_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGTTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTAGTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332128" ref_strand="+" ref_description="SGN-E332128 [cTOD-16-O24]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgagaatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccnacatgctgtccttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="89839" stop="91171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90139" g_stop="90871" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E332128" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90139" e_stop="90871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCNACATGCTGTCCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332165" ref_strand="+" ref_description="SGN-E332165 [cTOD-16-L23]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgattatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccaacatgctgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="89839" stop="91165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90139" g_stop="90865" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E332165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90139" e_stop="90865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGATTATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288600" ref_strand="+" ref_description="SGN-E288600 [cLES-8-L16]">
      <seq>tttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="92235" stop="94317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92535" g_stop="92582" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92713" g_stop="92784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="120" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93434" g_stop="93494" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="181" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93705" g_stop="94017" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="494" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E288600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92535" e_stop="92582"/>
          <exon e_start="92713" e_stop="92784"/>
          <exon e_start="93434" e_stop="93494"/>
          <exon e_start="93705" e_stop="94017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAA</genome_strand>
        <mrna_strand>TTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227523" ref_strand="+" ref_description="SGN-E227523 [cLEL-30-B21](-)">
      <seq>ttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="93401" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93478" g_stop="93494" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93705" g_stop="94102" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="415" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="430"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E227523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93478" e_stop="93494"/>
          <exon e_start="93705" e_stop="94102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>TTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348512" ref_strand="+" ref_description="SGN-E348512 [cTOF-30-F15]">
      <seq>aagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="93401" stop="94335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93487" g_stop="93494" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93705" g_stop="94035" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="339" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="360"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E348512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93487" e_stop="93494"/>
          <exon e_start="93705" e_stop="94035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAA</genome_strand>
        <mrna_strand>AAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227310" ref_strand="+" ref_description="SGN-E227310 [cLEL-30-B21](-)">
      <seq>gaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="93475" stop="94403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93775" g_stop="94102" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="343"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E227310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93775" e_stop="94102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>GAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729014" ref_strand="+" ref_description="SGN-E729014 [LA19CG09]">
      <seq>cttgctcgctgagttttggagtatagacatatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatgggtcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95697" stop="97493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95997" g_stop="96041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="122" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96442" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="253" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96599" g_stop="96648" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="303" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96769" g_stop="97193" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="728" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E729014" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95997" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96442"/>
          <exon e_start="96599" e_stop="96648"/>
          <exon e_start="96769" e_stop="97193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</genome_strand>
        <mrna_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGGTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549043" ref_strand="+" ref_description="SGN-E549043 [TUS-66-M11]">
      <seq>catatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95724" stop="97438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96024" g_stop="96041" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="95" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96648" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="432" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96769" g_stop="97138" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="802" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E549043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96024" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96648"/>
          <exon e_start="96769" e_stop="97138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</genome_strand>
        <mrna_strand>CATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308087" ref_strand="+" ref_description="SGN-E308087 [cLEY-14-N14]">
      <seq>atatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaaaaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95834" stop="97197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96025" g_stop="96041" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="94" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96648" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="431" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96769" g_stop="96897" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="560" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E308087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96025" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96648"/>
          <exon e_start="96769" e_stop="96897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTG</genome_strand>
        <mrna_strand>ATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAAAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211794" ref_strand="+" ref_description="SGN-E211794 [cLEC-66-D15]">
      <seq>ataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95834" stop="97402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96034" g_stop="96041" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="85" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96442" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="216" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96599" g_stop="96648" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="266" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96769" g_stop="97102" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="600" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E211794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96034" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96442"/>
          <exon e_start="96599" e_stop="96648"/>
          <exon e_start="96769" e_stop="97102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGT</genome_strand>
        <mrna_strand>ATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726390" ref_strand="+" ref_description="SGN-E726390 [LA11CG02]">
      <seq>ccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctngatcacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttncagccgaggagtagacatggctgcactgaaagcaatgggggaccgtgacctgaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95834" stop="99659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96038" g_stop="96041" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96137" g_stop="96213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="81" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96312" g_stop="96442" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="212" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96599" g_stop="96648" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="262" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96769" g_stop="97271" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="765" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98095" g_stop="98175" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="845" r_length="80" r_score="0.926"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99312" g_stop="99359" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="893" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E726390" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96038" e_stop="96041"/>
          <exon e_start="96137" e_stop="96213"/>
          <exon e_start="96312" e_stop="96442"/>
          <exon e_start="96599" e_stop="96648"/>
          <exon e_start="96769" e_stop="97271"/>
          <exon e_start="98095" e_stop="98175"/>
          <exon e_start="99312" e_stop="99359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAG-GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAA</genome_strand>
        <mrna_strand>CCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGATC-ACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTNCAGCCGAGGA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAAGCAATGGGGGACCGTGACCTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310348" ref_strand="+" ref_description="SGN-E310348 [cTOA-1-C12]">
      <seq>tcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="95865" stop="96742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96165" g_stop="96213" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96312" g_stop="96442" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="180" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E310348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96165" e_stop="96213"/>
          <exon e_start="96312" e_stop="96442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG</genome_strand>
        <mrna_strand>TCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374383" ref_strand="+" ref_description="SGN-E374383 [TUS-33-J22]">
      <seq>taaaggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctagtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaangaattggggataccaatgggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="96464" stop="99678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96764" g_stop="97271" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98095" g_stop="98175" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="589" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99312" g_stop="99374" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="652" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99615" g_stop="99620" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="658" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E374383" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96764" e_stop="97271"/>
          <exon e_start="98095" e_stop="98175"/>
          <exon e_start="99312" e_stop="99374"/>
          <exon e_start="99615" e_stop="99620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCC</genome_strand>
        <mrna_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTAGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAANGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305694" ref_strand="+" ref_description="SGN-E305694 [cLEX-14-P8]">
      <seq>taaaggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctagtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="96464" stop="97508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96764" g_stop="97208" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E305694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96764" e_stop="97208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGT</genome_strand>
        <mrna_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTAGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374382" ref_strand="+" ref_description="SGN-E374382 [TUS-33-J22](-)">
      <seq>ttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="96712" stop="100224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97012" g_stop="97271" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98095" g_stop="98175" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="341" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99312" g_stop="99374" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="404" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99615" g_stop="99924" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="714" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E374382" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97012" e_stop="97271"/>
          <exon e_start="98095" e_stop="98175"/>
          <exon e_start="99312" e_stop="99374"/>
          <exon e_start="99615" e_stop="99924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAA</genome_strand>
        <mrna_strand>TTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544442" ref_strand="+" ref_description="SGN-E544442 [TUS-66-M11](-)">
      <seq>aaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcatatagagaagattatatgattccgaattgttatgtcattctaaaaaaaaaaaaaaaaaaaaaaactcgagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="96767" stop="100260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97067" g_stop="97271" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98095" g_stop="98175" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="286" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99312" g_stop="99374" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="349" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99615" g_stop="99959" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="694" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="715"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E544442" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97067" e_stop="97271"/>
          <exon e_start="98095" e_stop="98175"/>
          <exon e_start="99312" e_stop="99374"/>
          <exon e_start="99615" e_stop="99959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</genome_strand>
        <mrna_strand>AAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228358" ref_strand="+" ref_description="SGN-E228358 [cLED-3-B15]">
      <seq>ttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctattctcaattgctccctcccttctatgataaaacaacgaatttaagaatgacatatcaattcggaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="100835" stop="99627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100645" g_stop="100640" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="99923" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="617" r_length="611" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E228358" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100645" e_stop="100640"/>
          <exon e_start="100533" e_stop="99923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCTT</genome_strand>
        <mrna_strand>TTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTCTCAATTGCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATATCAATTCGGAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376924" ref_strand="+" ref_description="SGN-E376924 [TUS-20-A17]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttattgaaaacaatgttgttctatttttcaatttctccctcccttctatgataaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101071" stop="99666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100771" g_stop="100640" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="99966" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="701" r_length="569" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E376924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100771" e_stop="100640"/>
          <exon e_start="100533" e_stop="99966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTA-TTTTCAATTTCTCCCTCCCTTCTATGATAAAACA</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATTGAAAACAATGTTGTTCTATTTTTCAATTTCTCCCTCCCTTCTATGATAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283504" ref_strand="+" ref_description="SGN-E283504 [cLER-12-I7]">
      <seq>tttttttgaaaatagaacaacattgttttccataaaataatgtaattacaaaagacaaatgaatagtaatgtgctgtgaaacgatcaacaagctttcacagaagggttcgcagggcttggagatgaggcacgacttttattcccacaatctttcccattccttgcaagcaaagcagtcaaaaacttgttattgggttcctttagcaacagctgtgatgatgaagaagtggggttacaggcgtgatcagcagggaacctgtgtctgaggcaaacttgaatccggcatatcttgcaagtgctagtgtttgagaaggtcaaaatccccttgcatcttttgacaggacaggtaggtttcttcttcttcttcttagggtcacaatccccagattcctcgtgtttttgtaatattgctttgtggtcttcaactttacagccggtagtttccatggacatagaacaaatttcgcaaaccaaaacgattcggctgttaaagtcagattttgggcattcatgagacttgcatgatctatgttccacacaaaatacctttaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="99693" stop="100840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99988" g_stop="100542" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E283504" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99988" e_stop="100542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTGCACATC</genome_strand>
        <mrna_strand>TTTTTTTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTTTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350594" ref_strand="+" ref_description="SGN-E350594 [cTOS-5-B24]">
      <seq>aaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101065" stop="99700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100765" g_stop="100640" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="99991" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="669" r_length="543" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E350594" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100765" e_stop="100640"/>
          <exon e_start="100533" e_stop="99991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>AAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355434" ref_strand="+" ref_description="SGN-E355434 [cTOS-25-K8]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="100807" stop="99700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100507" g_stop="99991" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E355434" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100507" e_stop="99991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298779" ref_strand="+" ref_description="SGN-E298779 [cLET-44-K9]">
      <seq>cgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctgcaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="100765" stop="99700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100465" g_stop="99991" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E298779" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100465" e_stop="99991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>CGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTGCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349062" ref_strand="+" ref_description="SGN-E349062 [cTOS-2-C18]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="100807" stop="99700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100507" g_stop="100001" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E349062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100507" e_stop="100001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352231" ref_strand="+" ref_description="SGN-E352231 [cTOS-13-N1]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="100807" stop="99700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100507" g_stop="100001" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E352231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100507" e_stop="100001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243682" ref_strand="+" ref_description="SGN-E243682 [cLED-34-N12]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101071" stop="99792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100771" g_stop="100640" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100092" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="574" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E243682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100771" e_stop="100640"/>
          <exon e_start="100533" e_stop="100092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACC</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233035" ref_strand="+" ref_description="SGN-E233035 [cLED-6-E7]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101071" stop="99829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100771" g_stop="100640" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100129" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="537" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E233035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100771" e_stop="100640"/>
          <exon e_start="100533" e_stop="100129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGG</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244571" ref_strand="+" ref_description="SGN-E244571 [cLED-38-H11]">
      <seq>gaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101055" stop="99897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="100640" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100197" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="453" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E244571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="100640"/>
          <exon e_start="100533" e_stop="100197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGC</genome_strand>
        <mrna_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235987" ref_strand="+" ref_description="SGN-E235987 [cLED-16-E6]">
      <seq>aagaacaaatttacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101071" stop="99898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100771" g_stop="100640" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100198" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="468" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E235987" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100771" e_stop="100640"/>
          <exon e_start="100533" e_stop="100198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAG</genome_strand>
        <mrna_strand>AAGAACAAATTTACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280975" ref_strand="+" ref_description="SGN-E280975 [cLER-7-A18]">
      <seq>aatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101062" stop="99900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100762" g_stop="100640" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100200" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="457" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E280975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100762" e_stop="100640"/>
          <exon e_start="100533" e_stop="100200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCAC</genome_strand>
        <mrna_strand>AATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241273" ref_strand="+" ref_description="SGN-E241273 [cLED-26-F17]">
      <seq>gaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101055" stop="99960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100755" g_stop="100640" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100260" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="390" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E241273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100755" e_stop="100640"/>
          <exon e_start="100533" e_stop="100260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAG</genome_strand>
        <mrna_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236208" ref_strand="+" ref_description="SGN-E236208 [cLED-20-D9]">
      <seq>aaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgttaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgggacccctagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggatattgaccttctcaaacactagcacttgcaagatatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="101063" stop="99969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100763" g_stop="100640" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100533" g_stop="100269" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="389" r_length="265" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E236208" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100763" e_stop="100640"/>
          <exon e_start="100533" e_stop="100269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCC</genome_strand>
        <mrna_strand>AAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTTAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGGGACCCCTAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATATTGACCTTCTCAAACACTAGCACTTGCAAGATATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313783" ref_strand="+" ref_description="SGN-E313783 [cTOA-17-F20]">
      <seq>gaagatgtacacttttgctcatctcctcaacaggctcaaagttgaatttttgaaaccttttgttttcattcatatttgaacctcaaagattgaatcttgaaacttctttttttttttcttcattgaaatgggtactagcaagcaaagatggagaatttcatttcacaagtctccatcaaaacaacctcctattcctatagaatttgtctgtcctatttctggttctctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactctttgtcgtcagcctctgactttgaaaccctaaacccaaattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="105701" stop="106954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106001" g_stop="106654" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E313783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106001" e_stop="106654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTT</genome_strand>
        <mrna_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTTGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372039" ref_strand="+" ref_description="SGN-E372039 [TUS-30-D8]">
      <seq>ctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtgaaattgaagagttcccaaatatctgaacaagaagaagctgtcatctcgtttcgaaaattgacccgaacccgtgaagaaacccggttccagttatgcactccgcgtatactttcagctctacgtgtactcatcacttcaaggtatgtttctgtacaagtaaattcagtagcggcattggtaaatttgtcgttagagaatcgaaacaaggtgaaaatttttacggtctggaattgttccgtcctttattgacgtgttgaaaagtggattccaagaatcacaggaacatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="105927" stop="107267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106227" g_stop="106967" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E372039" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106227" e_stop="106967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAA-TTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</genome_strand>
        <mrna_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTTACGGTCTGGAATTGTTCCGTCCTTTATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282921" ref_strand="+" ref_description="SGN-E282921 [cLER-17-A11]">
      <seq>ctcatggctgaccctgtaatcgtttcttcaggccatactttggagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="105927" stop="106976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106227" g_stop="106676" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E282921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106227" e_stop="106676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTG</genome_strand>
        <mrna_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTGGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372038" ref_strand="+" ref_description="SGN-E372038 [TUS-30-D8](-)">
      <seq>cttttcagtttagcgttagatgatcagaacaaaactgcaattggggtattaggagctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaggagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="106674" stop="107980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106974" g_stop="107679" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E372038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106974" e_stop="107679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATG</genome_strand>
        <mrna_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552625" ref_strand="+" ref_description="SGN-E552625 [cTSB-4-I15]">
      <seq>gctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaagagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgattttggttttggttttgctcgtcgtgtcttctgaggtcatgtgacagttgacatggtaaataatgttggaggtgtaaagaaagattctgaacagtgtgttttagtttttggagaaaagaggctgtctttaacatgaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="+" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="106728" stop="108117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107028" g_stop="107824" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="+" ref_id="SGN-E552625" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107028" e_stop="107824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTG</genome_strand>
        <mrna_strand>GCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAAGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241773" ref_strand="+" ref_description="SGN-E241773 [cLEE-10-G7]">
      <seq>agattgtgtcaatggtacactctcttcattcttgctttcactgtttgagcatcaagatgctcaaaaatgaaaaacaactctggagttcattgcatttgctctgcagcaatgtttattgcaatgcagaccttaaagaaacatgagaataacaattctctaacaacttccgcagttgcagcaatcaatcaactccagcataaataccaaattactagacagcggcttgtggaagccacgaacagtgcatagaataagcctcaggcacacaagaaagtgaaaatcgcattgcttgaagagtattaggagacaatgagttcatgttaaagacagcctcttttctccaaaaactaaaacacactgttcagaatctttctttacacctccaacattatttaccatgtcaactgtcacatgacctcagaagacacgacgagcaaaaccaaaaccaaaatcatgctatccgaagctatgcaaagagaaaaccgtgcctaattacaagccatttctcagaaaaaggaatgaaatagcatacagtgaagaaacagaaacaaacaagagctatgaagaacttatccgtgcttgactgatatcatcatccgaattaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="108431" stop="107222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108131" g_stop="107522" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E241773" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108131" e_stop="107522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</genome_strand>
        <mrna_strand>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATCGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349598" ref_strand="+" ref_description="SGN-E349598 [cTOS-1-B24]">
      <seq>agaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="109721" stop="108776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109421" g_stop="109084" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="356"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E349598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109421" e_stop="109084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351915" ref_strand="+" ref_description="SGN-E351915 [cTOS-8-N21]">
      <seq>agaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="109721" stop="108776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109421" g_stop="109084" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="356"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E351915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109421" e_stop="109084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694574" ref_strand="+" ref_description="SGN-E694574 [LH_Ea04E12](-)">
      <seq>gttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactacttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcacttacaagacgaaagtaaaacataataatatgtatacaatgttttttattagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110157" stop="81641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109857" g_stop="109213" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E694574" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109857" e_stop="109213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAAC-TTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAG</genome_strand>
        <mrna_strand>GTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTACTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTTACAAGACGAAAGTAAAACATAATAATATGTATACAATGTTTTTTATTA-GATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690734" ref_strand="+" ref_description="SGN-E690734 [LH_Ea04E12]">
      <seq>tgttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactacttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcacttacaagacgaaagtaaaacttataatatgtatacaatgttttttatttagattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110157" stop="108920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109858" g_stop="109218" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E690734" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109858" e_stop="109218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATT</genome_strand>
        <mrna_strand>TGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTACTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTTACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTATTTAGATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220883" ref_strand="+" ref_description="SGN-E220883 [cLEL-22-N13](-)">
      <seq>cccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacccaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagttcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="109965" stop="81637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109665" g_stop="109239" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E220883" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109665" e_stop="109239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTT</genome_strand>
        <mrna_strand>CCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704534" ref_strand="+" ref_description="SGN-E704534 [FA24CC04]">
      <seq>gaggctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110660" stop="109265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110364" g_stop="109565" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E704534" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110364" e_stop="109565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAA</genome_strand>
        <mrna_strand>GAGGCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729517" ref_strand="+" ref_description="SGN-E729517 [LA21BC02]">
      <seq>cgatgacctccagctatttcccatcccccgtttacctatttccctctcctttttttaggcatttgttttctattaactttcccttctcaaacacgtgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110743" stop="109272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110444" g_stop="109572" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E729517" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110444" e_stop="109572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTT-TTTTCTATTAACTTTCCCTTCTCAAACAC-TGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGT</genome_strand>
        <mrna_strand>CGATGACCTCCAGCTATTTCCCATCCCCCGTTTACCTATTTCCCTCTCCTTTTTTTAGGCATTTGTTTTCTATTAACTTTCCCTTCTCAAACACGTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709140" ref_strand="+" ref_description="SGN-E709140 [FA42DC03]">
      <seq>cgattcagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110484" stop="109283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110189" g_stop="109583" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E709140" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110189" e_stop="109583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</genome_strand>
        <mrna_strand>CGATTCAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304777" ref_strand="+" ref_description="SGN-E304777 [cLEX-10-A9]">
      <seq>aacctatcactccccggcgatgggttcgatgttctaccccaaaacgggcttgaacttgcttgccccggcgttgctcttgctccgacattctcgccgcctgccggaatctcgtgtcaaaccggaggcccgttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110352" stop="109283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110052" g_stop="109583" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E304777" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110052" e_stop="109583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</genome_strand>
        <mrna_strand>AACCTATCACTCCCCGGCGATGGGTTCGATGT--TC-TAC-C-CCAAAACGG-GCTTGAACTTGCTTGCCCCGGCGTTG-CTCTTGCTCCGACATTCTCGCCG-C-CTG-CCGGAATCTCG-TG-TCAAACCGGAGGCCCG--TTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731244" ref_strand="+" ref_description="SGN-E731244 [LA26CC07]">
      <seq>attgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacnatcccagatttgctcaagctttgagaaatgcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110746" stop="109332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110446" g_stop="109632" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E731244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110446" e_stop="109632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTA</genome_strand>
        <mrna_strand>ATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACNATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689773" ref_strand="+" ref_description="SGN-E689773 [LH_Ea01M11]">
      <seq>tcctcgtgccgaattcggcacgaggtgaagccctccagctatttcccatccccacttctcccatttacctatttccctctcctttttttagccatttttttctaatactttccctttctctaacactcagctgaaaaacagagcaaatggggttaactcttcttctttttctttgcttcgctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcgtattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcaccaactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatactcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaagttgggccgtaaagattcttttacttcaaaagcttcgttggttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatcccttctacaatcccagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110731" stop="109356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110418" g_stop="109656" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="822" r_length="763" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E689773" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110418" e_stop="109656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTT-CTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTG</genome_strand>
        <mrna_strand>CCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTAAT-ACTTTCCCTTTCTCTAACACTCAGCTGAAAAACAGAGCAAATGGGGTTAACTCTTCTTCTTTTTCTTTGCTTCGCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCGTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCAACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATACTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAAGTTGGGCCGTAAAGATTCTTTTACTTCAAAAGCTTCGTTGGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCCTTCTACAATCCCAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249582" ref_strand="+" ref_description="SGN-E249582 [cLEF-56-P2]">
      <seq>aaaacagagcaaatgggtttaactcttctgctttttctttgcttctctggtatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110643" stop="109363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110343" g_stop="109663" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E249582" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110343" e_stop="109663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCC</genome_strand>
        <mrna_strand>AAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGGTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728514" ref_strand="+" ref_description="SGN-E728514 [LA18AC10]">
      <seq>ttaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110673" stop="109435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110373" g_stop="109735" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E728514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110373" e_stop="109735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCC</genome_strand>
        <mrna_strand>TTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266228" ref_strand="+" ref_description="SGN-E266228 [cLEI-3-I22]">
      <seq>ctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110696" stop="109573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110396" g_stop="109873" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E266228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110396" e_stop="109873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACT</genome_strand>
        <mrna_strand>CTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339637" ref_strand="+" ref_description="SGN-E339637 [cTOE-16-N16]">
      <seq>ctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110709" stop="109633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110409" g_stop="109933" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E339637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110409" e_stop="109933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTC</genome_strand>
        <mrna_strand>CTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306002" ref_strand="+" ref_description="SGN-E306002 [cLEY-17-P9]">
      <seq>ttaaataaaaaataaaaacatatatcattgaatgaagagaagtgagaaatatgaagaccccattgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="110807" stop="109864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110507" g_stop="110164" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E306002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110507" e_stop="110164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACC</genome_strand>
        <mrna_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342211" ref_strand="+" ref_description="SGN-E342211 [cTOF-10-N2]">
      <seq>tttggctttcaactattcatagaacagagaagcaggaattattagtcctccaccaactgttgaattggtccatagctggcttctcgatgatacctcccacctcttttcagctactggtctcttatccaggctgacttccacttttccttggcgttgcacctcccttcctgcttctatcaatcggttatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaagttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacttttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcctccgtgtatcgattcattacaattttcagtccttttctgatggcggcattacttattttcaagctgttgataccattcatacttgtcatatgtgcgttcagtgcaatcacaaaattggtgcaagttccattgttgggatgctattttctggntgatcttgtgctctgatgtaatgacaatccatttcttcttcctggtccgaaataaaggaagctggatggaaattggcaacagcattagccatttcggaattatgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="122234" stop="118425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121934" g_stop="121857" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121856" i_stop="120847" i_length="1010">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120846" g_stop="120744" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="184" r_length="106" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120743" i_stop="120653" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120652" g_stop="120484" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="353" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120483" i_stop="120303" i_length="181">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120302" g_stop="120204" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="452" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120203" i_stop="120106" i_length="98">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120105" g_stop="120047" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="511" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120046" i_stop="119138" i_length="909">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119137" g_stop="119032" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="618" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119031" i_stop="118792" i_length="240">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118791" g_stop="118725" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="685" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E342211" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121934" e_stop="121857"/>
          <exon e_start="120846" e_stop="120744"/>
          <exon e_start="120652" e_stop="120484"/>
          <exon e_start="120302" e_stop="120204"/>
          <exon e_start="120105" e_stop="120047"/>
          <exon e_start="119137" e_stop="119032"/>
          <exon e_start="118791" e_stop="118725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATA-CTCCCA-CTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCA-TTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGTGTAAGTGGAACTGAACATCCTTGTTTATGAATCCTTTGTTTCTTATTTTGCCTTTCATTTGCATATGGTGACAGATGCGATTGTTCCTTTTTTTGCAGCCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCATGTAAGTACAACTTGCAAATTTTCCTTCTTAACAGTTCGAATGGAAAACTACTGTAATTCAATGATTGTGGTGGAAATCTTTTCTTGGAGTTTCTAGGGCTTGGAGGTTGTTTTTCTCCCTCAAATTCATCCAAATTAGATGTGACAATTACCGACCACTCTTACATATCTAAAATATTGGTTTGAGGGATTGCCTGTTGCAGCGCTCAACTTTCACCTGTTGAGACACTCCTCGCTGCCTGGAGCAACTAGAAGATATTGTTAAAGCGTTGCAGCGCCCAAATTTCGACCGGTGCTACGGTGGCTGCTGTTTTCCACGAATATATCTAAATTATTTCCAACTCCAAATTGTTCTCCACTTGCTTCAATCCACTCCTCCTCATTTCCAAACATCCATATTACTTTCCAAATACAACTTTTGAGTGCTGAACACTCTTGTGGCAACTTAACCGCGTTATTAGTTGTGTTAGCCATAACTAGAGTGTAGAAATCTTCAGGGTATTTTACCATCTTTCTGTGTTGGGTGGTTGGGTTCTTCTTGGTATTACCTTGCAGCCTTTACATGTAGGCTGTAGCCCTGCAATTTCTTCTAGTGTGGGTGAAGTTCATTTGGTCATGATTACTCCTCTCTTAAAAGTTATTCAGTGCATTCCCTGTTTTAAAGTAATTGTTGGCTAATTCAAACTTTTAAGATAACAAAGTGCAGAGCACAAGAACTACCTGATCTTCACTGAGAACAAACTGCAGTATAGGAACCTATATTTATACGTCAAGAAGCCTTTAGAATTTTTGGAGACCAAGAAAATTTGTATTTGATATGCAAGTAGAAATATTTTGGAATTCTTGGTCTTGCTGAGATCAGTTGTGTACCATGGATGACTTTTATTTTTTTGTTGTGCATTAACTGCAGATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGG-TGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTGGTAAGACACTATTATTCCTCCTATGGTGCAATTCTCATATGTTTCTCCACCTACTTTCCATCCAATGTGTCTTGTTTGAAAAACTTAGGATTCCAGTATCAATATGCTCTTCTCTGTCATAATCTTCAACAGCTTTGAATTTTTCTGTTTCATGCTTCCGACTGTTTTATCTCCAGAAACATGATTCAGGGGGTTCATCATGGTTAGGATTCATCTTACTTGTTTTCTGATTGGTAATAGGTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</genome_strand>
        <mrna_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACCTCCCACCTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCACTTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT..................................................................................................CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGNTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG................................................................................................................................................................................................................................................GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365769" ref_strand="+" ref_description="SGN-E365769 [cLPT-8-N20]">
      <seq>tcaagctgacatagcaccactgatgtccactcttcttggtctgccatgtcctgtcaactcggttggcaatctgcctcttcagtacatgaatctgaacaaggcagaagaagttgaagctgtgctggccaatacgaagcaaatcctcaatcagttccttcgaaagtcacagttaaagcaatcgacctcattatacatcaagcctttcaagcccttggctagttattcatcactattgcgtgaaattgagcaactgatttctctcaaagagtatgaaactgcaatgaaattatctgaacagcttaggagcttggcacttcaaggacttcactatttccagacatatgattggctgatgctgatgactgtaatcactcttggctatgttggttggatgatctatgtgatactccatgtcttgcaatcttatacatccctacctgcaaatatttttagcaaggagcaagtgcctagtccaagaagtacagctaagatacatcttttaggagggttgttgatgggagtagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="125541" stop="122472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125241" g_stop="125217" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125216" i_stop="125113" i_length="104">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125112" g_stop="125038" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125037" i_stop="124887" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124886" g_stop="124820" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124819" i_stop="124439" i_length="381">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124438" g_stop="124116" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="490" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124115" i_stop="122808" i_length="1308">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122807" g_stop="122772" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="526" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E365769" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125241" e_stop="125217"/>
          <exon e_start="125112" e_stop="125038"/>
          <exon e_start="124886" e_stop="124820"/>
          <exon e_start="124438" e_stop="124116"/>
          <exon e_start="122807" e_stop="122772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGACATAGCACCACTGATGGTCGATTACCTTGTCCTCTTCTGACAGTCCTATCTTTGAAGTGTCTTTCTATCATATCAACTTCGTCTAAAGTCTGACTCTGATATGATCTCTAAAAATTGCAGTCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAGGTAGCTGCATTACTATAAGTTCTCTGTCTATTTTGCACTGTACGACTGTGTGATGGATTGGGAGAGATATACTGGTTTGCTGGTTCTTTGGGGCTATTTTGTTCTTTGTATTGAGATAGAATGCAGGTCTTAAAATCACTTTTATGTCCAGGCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCACGTATCCTTCCCTATAACTTAGATTGTTTTTCACTTCTAATTTCATTCTGCCTCACTCATCTTACATGTTATTTCCTAATTTTCTTTTTGTTGCAATTCACAACTTTCAGAGTTTTAAATGTCAGTTAAGATAGAACCTTATTAAAAGAAAATGTCAGTCAAAATAGAAGTAACTGGTAGAACGATTTAAGTATAGCATATACCAGAATTAGGACAAGTTACCAATTATTAGACCAATAGAGGGGCAAAGTGATAAAATTAATTCCTGTGCTGTCATTCCAAACTGCTTCATCAATGTAACTGGGTTCTGGGGCTTGTCCTGTTTTCACATTCTAAATTGATTTTTGGTTTCATCTTTTGAGCATCCTTGACAAATATGTAGAGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAGGTACCTGTTTTGCTCTATATGCACGTGCTGTTGTGTATTTCTTTGTCTGTGTTGGTTAGAAGAGGGTTGTAAAGGGAAGGTTCAAAATAAATTATATGTCTGTTTGGTGTTGAAAGTGTGATAGATTAGTAGGAAAAAGGGAGGAGGAAATTGACATATAAAAGCATTTATGTATGAAAAGTACTCGTGTTGTGCAAGTTCAAGTAATTTTCTCTATTTATACTAAAACCAACAAAAATATCTTGACTGTTGATATATGATTTTAATTCGAGGCGGAGATATACAAAGGGTTGTCCCGTTGTTTTGCTACCTCTTTGAGATAGAGTACATCTAGTGACAAATATTGATATGCCAAAATTACACATGTTCCTAAATCATATAATCTATTTCATAGCTCCAGAAAGTTCAAAGGTGAGACCATAATCAGTTTATCTATGCATTGTAAGTGGGAGGAGCAGGTTTTCCACCAAAACTATAGAAAGTAAAGACTTACTAAGGAAAGAAATTGAAATGTAAGAGCAAAGTGGGAGTAATGACACCTGATGTTCATTTGGACATTAATTCTCTAGGTTTTTTTTCTTTCAACCCCCAAAGGTTTCTCCTTTCTTCTTTTTCTAAAATGTCCCATGAAAGTCATACCCATCTTGGAGACCATATTTGGTTATATTTTGTCTCTATTATGCCTGATCTCCAAAGCTATTGTATCTAGTGTTGTCAAAGGCACGCTAAAGCCTGATATGAGGCTCTAAACGTGTTGAGTGCTTCGCGTCACTTAGTATGTGCTTCACTGTCGTCATCAAGGTTTTAAGACATACAAACCTTGCCAATGAGTGGTTCTTGAAGAGACGGCACTAAAAAATTAATCTTTCAGTGTCTTTGTATGTTATATATGTTATTTGTGCTTATAATATTAGTCTTGGACTAAACATATGTAATTTTGTATCCATTTGCGTCTTTTTCATAAAAGCCACACTTTATTTGCGCTTTGCGCTTAAAGACCCAACAGACGTTAGAGTTATTTTTGTGTTTTTTGCTTTTCATAACACTGATGAATCAAGTGTTCATCTGGGACTTCTCATCAGGGAAATTCTTAAAAACTTATATTATCACGGTCCTCTATTGGCGTATTCATGCCTCTTCTTATTATACTATTTTGGCATTTAGAAATTGATGTTATTAGCACAAGTGTCTTCCTCCCATAAAAATAGATGGATATTCTTGACCGTCATTCGTAAGGTGATACTAGAAAGAATTGCTATCTGACCAATTGATTCCCATGTTCTTGCTTATATTCTTTTTCTATGGCAGATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</genome_strand>
        <mrna_strand>TCAAGCTGACATAGCACCACTGATG........................................................................................................TCCACTCTTCTTGGTCTGCCATGTCCTGTCAACTCGGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG.......................................................................................................................................................GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGCAATCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAATGAAATTATCTGAACAGCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTCCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTGATACTCCATGTCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGAGCAAGTGCCTAGTCCAAGAAGTACAGCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293058" ref_strand="+" ref_description="SGN-E293058 [cLET-12-A22]">
      <seq>gctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttacttgttgaaacaagtggtatacgattggaaaaagtacttcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="130316" stop="128279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="90" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128972" g_stop="128579" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="484" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="494"/>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E293058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</genome_strand>
        <mrna_strand>GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAAGTACTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299062" ref_strand="+" ref_description="SGN-E299062 [cLET-42-G1]">
      <seq>aatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttaaaaaaaacttataaaaatacttgtgaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131677" stop="128325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131377" g_stop="131298" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="134" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="194" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128625" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="542" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E299062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131377" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTA</genome_strand>
        <mrna_strand>AATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551826" ref_strand="+" ref_description="SGN-E551826 [cTSB-1-P19]">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaaaaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131995" stop="128347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131695" g_stop="131298" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128647" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="838" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E551826" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131695" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATG</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAAAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716572" ref_strand="+" ref_description="SGN-E716572 [FB17BG09]">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcgggggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgaaaactaccaggatatgttctgcaactgaggaaaatggtgctactgctgttgccgaaaaaaaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttaaaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaaacatttttgtgttatgccagttctttgatctttttcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131995" stop="128399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131695" g_stop="131298" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128699" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="788" r_length="276" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E716572" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131695" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGT-AACATTTTTGTGTTATG-CAGTTCTTTGATCTTTTTCTTCC</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGGGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAAAACTACCAGGATATGTTCTGCAACTGAGGAAAATGGTGCTACTGCTGTTGCCGAAAAAAAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAAACATTTTTGTGTTATGCCAGTTCTTTGATCTTTTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317367" ref_strand="+" ref_description="SGN-E317367 [cTOA-28-C22]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaaatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtggtatgcagttctttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131988" stop="128408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131688" g_stop="131298" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="446" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="506" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128708" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="770" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E317367" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131688" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAA-ATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAA-ATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGGTATGCAGTTCTTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347594" ref_strand="+" ref_description="SGN-E347594 [cTOF-26-O22]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131994" stop="128448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131694" g_stop="131298" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128748" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="736" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E347594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131694" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCC</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347255" ref_strand="+" ref_description="SGN-E347255 [cTOF-25-P9]">
      <seq>tcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtccccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacatttgaatctgagctttcaggatgaagaagatattagctaaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131933" stop="128483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131633" g_stop="131298" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="390" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="450" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128783" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="642" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E347255" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131633" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACA-TTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCT-AAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATC</genome_strand>
        <mrna_strand>TCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCCCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347824" ref_strand="+" ref_description="SGN-E347824 [cTOF-26-H4]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcangcttcaagttgcaaacattgaatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131994" stop="128575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131694" g_stop="131298" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128875" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="609" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E347824" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131694" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAG</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCANGCTTCAAGTTGCAAACATTGAATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284924" ref_strand="+" ref_description="SGN-E284924 [cLER-19-F14]">
      <seq>tgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131983" stop="128626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131683" g_stop="131298" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128926" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="547" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E284924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131683" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTT</genome_strand>
        <mrna_strand>TGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317398" ref_strand="+" ref_description="SGN-E317398 [cTOA-28-O4]">
      <seq>tctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131978" stop="128640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131678" g_stop="131298" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="435" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129930" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="495" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128972" g_stop="128940" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="528" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E317398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131678" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129930"/>
          <exon e_start="128972" e_stop="128940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGG</genome_strand>
        <mrna_strand>TCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266644" ref_strand="+" ref_description="SGN-E266644 [cLEI-5-E18]">
      <seq>gaactattgattttgtgaatgttggatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtagtttcctacattcaatatgcaatatagtggacaacttccaggtggactatcttgtgctgcctttttgtgtttggagtttctctataaatgataggaacagtctatctaaatgaacgatatcctttaacttttgatggtgagggaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="130463" stop="129323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130163" g_stop="129623" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E266644" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130163" e_stop="129623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</genome_strand>
        <mrna_strand>GAACTATTGATTTTGTGAATGTTGGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTGATGGTGAGGGAAAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266510" ref_strand="+" ref_description="SGN-E266510 [cLEI-5-E22]">
      <seq>gaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtaggttcctacattcaatatgcaatatagtggacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="130463" stop="129440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130163" g_stop="129740" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E266510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130163" e_stop="129740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAAC</genome_strand>
        <mrna_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGGTTCCTACATTCAATATGCAATATAGTGGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318370" ref_strand="+" ref_description="SGN-E318370 [cTOA-29-J19]">
      <seq>gaacaatgaatgaagctgctattccttccgtgactaactctttagaggtaaattgagtgtgtaaaattcaaagcttcttctggtacatgctaatttgttgacacttcacaaaacacattacttgtctgctgcatttgagatacaatgtagtagcagttgcagggactctgagtttttatttttctgtgtaatattaatgctacttgtgaatcaccagaagactcgctattacattgaagagtgaaataaacaacacaggttgtttacactttaaaggacaaattaaagaaaggaaaacgttctgatctttctgagggatttaaactctttttttcttggaactaggcatatctgagatcttataatctagaatcaaagaatcagatacagatattcatctgattctagtttttcagaagctgcaagagagaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgaaggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="130892" stop="129577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130592" g_stop="129877" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E318370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130592" e_stop="129877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</genome_strand>
        <mrna_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAAGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312533" ref_strand="+" ref_description="SGN-E312533 [cLEZ-20-F14]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131994" stop="129634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131694" g_stop="131298" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130546" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129989" g_stop="129934" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="507" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E312533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131694" e_stop="131298"/>
          <exon e_start="130599" e_stop="130546"/>
          <exon e_start="129989" e_stop="129934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGT</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294558" ref_strand="+" ref_description="SGN-E294558 [cLET-22-M24]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaagtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131988" stop="130250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131688" g_stop="131298" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130550" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="441" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E294558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131688" e_stop="131298"/>
          <exon e_start="130599" e_stop="130550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAAGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283660" ref_strand="+" ref_description="SGN-E283660 [cLES-1-J5]">
      <seq>tccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131993" stop="130255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131693" g_stop="131298" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130599" g_stop="130555" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="441" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E283660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131693" e_stop="131298"/>
          <exon e_start="130599" e_stop="130555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</genome_strand>
        <mrna_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578376" ref_strand="-" ref_description="SGN-E578376 [LE12DB02]">
      <seq>gcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcacccatatttacagagaattcaaccctgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctgaaaaaaaaaaaaaaaaaaaaacctgcagcccgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="133364" stop="81637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133065" g_stop="132954" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132524" g_stop="132473" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="164" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67">
            <donor d_prob="0.616" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132405" g_stop="132130" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="440" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132129" i_stop="131909" i_length="221">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131908" g_stop="131881" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="467" r_length="27" r_score="0.786"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="131880" i_stop="130600" i_length="1281">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="130599" g_stop="130586" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="481" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E578376" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133065" e_stop="132954"/>
          <exon e_start="132524" e_stop="132473"/>
          <exon e_start="132405" e_stop="132130"/>
          <exon e_start="131908" e_stop="131881"/>
          <exon e_start="130599" e_stop="130586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAAATCTGTCTTGCTGTTACTCTTCCCCAGTATACATACTTTTTAAATTTAAATGGGATATCTTGGATTGCCGTTTCTACAACTGGGTTTCAACAATGTCAATAAAACAAGCATTATATTTAAACTAACAATATCACGATAACAACCATTCAAACGAGTGATTTCTTGAGTGAGAATAAATATACTACTTTAGTAAAATTGGAGAAGATATCACTTTAGCTCAAAAAAAAAATAAAAAAACTACATTGTAAGACTAAAATTGTTAGTTATTTTTAATGTTACTCTATTTTTTAAAAATAGTTGTGATAAATACAAATAATTGAATAAATTATACTTATATTTATTATATAAAAATATCATAGGATGAAATAATCTACTATCAGTAGTATAAATTTACTGACTTCAACATTATTTTGTCCCAAATATCCATAGGTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAAT</genome_strand>
        <mrna_strand>GCAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCACCCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACCCTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCC.............................................................................................................................................................................................................................CTGAAAAAAAAAAAAAAAAAAAAAC-CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCCGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294767" ref_strand="+" ref_description="SGN-E294767 [cLET-17-B21]">
      <seq>gttgtaatctgttttctggataagagggaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggcggttattcttgctcttcaacttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgcctaagaagaatctgttgctcccactacatatgatcaaactgtttctgtttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="131984" stop="131033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131685" g_stop="131333" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E294767" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131685" e_stop="131333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCG</genome_strand>
        <mrna_strand>GTTGTAATCTGTTTTCTGGATAAGAGGGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGCGGTTATTCTTGCTCTTCAACTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCTAAGAAGAATCTGTTGCTCCCACTACATATGATCAAACTGTTTCTGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391914" ref_strand="+" ref_description="SGN-E391914 [TUS-24-E14](-)">
      <seq>gcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="134784" stop="101337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134484" g_stop="134463" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134383" g_stop="134240" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="166" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133061" g_stop="132954" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132524" g_stop="132473" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="326" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132405" g_stop="132132" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="600" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E391914" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134484" e_stop="134463"/>
          <exon e_start="134383" e_stop="134240"/>
          <exon e_start="133061" e_stop="132954"/>
          <exon e_start="132524" e_stop="132473"/>
          <exon e_start="132405" e_stop="132132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</genome_strand>
        <mrna_strand>GCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269900" ref_strand="-" ref_description="SGN-E269900 [cLEM-17-L16]">
      <seq>caagaaccagaacatggttgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="133341" stop="131854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133041" g_stop="132954" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132524" g_stop="132473" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="140" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132405" g_stop="132154" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="392" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E269900" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="133041" e_stop="132954"/>
          <exon e_start="132524" e_stop="132473"/>
          <exon e_start="132405" e_stop="132154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</genome_strand>
        <mrna_strand>CAAGAACCAGAACATGGTTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701012" ref_strand="+" ref_description="SGN-E701012 [FA14DB07]">
      <seq>ctcttcccaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagaatcaccatatttacagagaattcaacactgaagctgatgcccaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139610" stop="132195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139310" g_stop="139265" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138974" g_stop="138825" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="196" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="355" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="514" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135873" i_stop="134556" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134555" g_stop="134463" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="607" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134383" g_stop="134240" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="751" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="133061" g_stop="132954" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="859" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429">
            <donor d_prob="0.740" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="132524" g_stop="132495" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="889" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E701012" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139310" e_stop="139265"/>
          <exon e_start="138974" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134555" e_stop="134463"/>
          <exon e_start="134383" e_stop="134240"/>
          <exon e_start="133061" e_stop="132954"/>
          <exon e_start="132524" e_stop="132495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCA</genome_strand>
        <mrna_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGAATCACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731784" ref_strand="+" ref_description="SGN-E731784 [LA28AG03]">
      <seq>caagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttncaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatctttccaaatcacccatatttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139603" stop="132655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139303" g_stop="139265" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138974" g_stop="138825" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="189" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="408" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="507" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135873" i_stop="134571" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134570" g_stop="134463" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="615" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134383" g_stop="134240" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="759" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="133061" g_stop="132955" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="866" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E731784" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139303" e_stop="139265"/>
          <exon e_start="138974" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134570" e_stop="134463"/>
          <exon e_start="134383" e_stop="134240"/>
          <exon e_start="133061" e_stop="132955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAG</genome_strand>
        <mrna_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTNCAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCTTTCCAAATCACCCATATTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262841" ref_strand="+" ref_description="SGN-E262841 [cLEG-59-K21]">
      <seq>caaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139259" stop="132717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138959" g_stop="138825" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="294" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="453" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135873" i_stop="134556" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134555" g_stop="134463" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="546" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134383" g_stop="134240" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="690" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="133061" g_stop="133017" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="735" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E262841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138959" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134555" e_stop="134463"/>
          <exon e_start="134383" e_stop="134240"/>
          <exon e_start="133061" e_stop="133017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</genome_strand>
        <mrna_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391743" ref_strand="+" ref_description="SGN-E391743 [TUS-24-E14]">
      <seq>cccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcaaatggaaatatggttttccggttgcgtgaaggtggtgggtgtggcaactaacaacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139598" stop="134037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139298" g_stop="139265" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138974" g_stop="138825" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="343" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="502" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135873" i_stop="134571" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134570" g_stop="134463" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="610" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134383" g_stop="134337" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="658" r_length="48" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E391743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139298" e_stop="139265"/>
          <exon e_start="138974" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134570" e_stop="134463"/>
          <exon e_start="134383" e_stop="134337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGT-GTGGGTGTGGCAACTAACAACGTTGC</genome_strand>
        <mrna_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAAATGGAAATATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGGTGGGTGTGGCAACTAACAACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247663" ref_strand="+" ref_description="SGN-E247663 [cLEF-42-E7]">
      <seq>ccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139597" stop="134178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139297" g_stop="139265" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138974" g_stop="138825" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="183" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="342" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="501" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135873" i_stop="134571" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134570" g_stop="134478" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="594" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E247663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139297" e_stop="139265"/>
          <exon e_start="138974" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134570" e_stop="134478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322581" ref_strand="+" ref_description="SGN-E322581 [cTOB-26-N14]">
      <seq>tctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggnacacctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="139282" stop="134178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139280" g_stop="139265" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138974" g_stop="138825" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="166" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138603" g_stop="138445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="325" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136628" g_stop="136569" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="385" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135972" g_stop="135874" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="484" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135873" i_stop="134556" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134555" g_stop="134478" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="562" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E322581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139280" e_stop="139265"/>
          <exon e_start="138974" e_stop="138825"/>
          <exon e_start="138603" e_stop="138445"/>
          <exon e_start="136628" e_stop="136569"/>
          <exon e_start="135972" e_stop="135874"/>
          <exon e_start="134555" e_stop="134478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCCTTCCAGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>TCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGNACACCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315770" ref_strand="+" ref_description="SGN-E315770 [cTOA-26-F13]">
      <seq>ttttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001M12-bJcMM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0001M12.2" temp_strand="-" temp_description="C01HBa0001M12.2  AC218052.1 htgs_phase:1 submitted_to_sgn_as:C01HBa0001M12.1 upload_account_name:manual">
        <position start="136161" stop="135104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135861" g_stop="135404" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001M12.2" gen_strand="-" ref_id="SGN-E315770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001M12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135861" e_stop="135404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</genome_strand>
        <mrna_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>239</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4961" PGL_stop="1275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4961" e_stop="4497"/>
            <exon e_start="4400" e_stop="4335"/>
            <exon e_start="3466" e_stop="3353"/>
            <exon e_start="2738" e_stop="2500"/>
            <exon e_start="2307" e_stop="2149"/>
            <exon e_start="2043" e_stop="1892"/>
            <exon e_start="1809" e_stop="1275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.704" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.847" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="4961" e_stop="4497" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.704">
            <gDNA_intron_boundary i_start="4496" i_stop="4401" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4400" e_stop="4335" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4334" i_stop="3467" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3466" e_stop="3353" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3352" i_stop="2739" i_length="614"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="2738" e_stop="2500" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.847">
            <gDNA_intron_boundary i_start="2499" i_stop="2308" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2307" e_stop="2149" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.756">
            <gDNA_intron_boundary i_start="2148" i_stop="2044" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2043" e_stop="1892" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1891" i_stop="1810" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="1809" e_stop="1275" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4961" stop="4497"/>
              <exon start="4400" stop="4354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4870" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4855" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4854" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4844" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4844" stop="4647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4841" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4837" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2500"/>
              <exon start="2307" stop="2209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4824" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4819" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4778" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4753" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4735" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2500"/>
              <exon start="2307" stop="2231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4556" stop="4497"/>
              <exon start="4400" stop="4335"/>
              <exon start="3466" stop="3353"/>
              <exon start="2738" stop="2500"/>
              <exon start="2307" stop="2149"/>
              <exon start="2043" stop="1918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2282" stop="2149"/>
              <exon start="2043" stop="1892"/>
              <exon start="1809" stop="1446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2281" stop="2149"/>
              <exon start="2043" stop="1892"/>
              <exon start="1809" stop="1410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1897" stop="1892"/>
              <exon start="1809" stop="1275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATGTAGGACCTTAGGAATAAAAAAAAAGTGTAAAAAATTTCATCTTTAATTTTCCCTATAAAACTTAGCTAAAAAAACAGTTGCTTCAATTTCAATGTAAGCTTAGCTGAAAAAAAAACAGTTACTTTAATCCTGGACCATAACATATCGTATTTATTGAACACACACACTCGTATGAATAAATATCAGATTTTTAGGTAAAGCTCATGTCCGCCACGCGTAGAAGTTGAAGATTTTGAAGAAAAAAACAGAGGAAAAATGGGAAGCAATAACAGAGAGACAACTTTTTACAAAGAAGTGCTACCATTTGCAGCTATGGTGACTATGGAATGTATAAATGTTGGATTAAATACGCTTTACAAAGCTGCTACTAACAAAGGCATGAGTAATCATGTCTTTGTTGTTTATAGTTATGGTCTTGCGGCTCTTCTGCTTCTTCCTTCTCCTTTCTTCTCCACCAG : ATCAAGAATTCTTCCACCTCTCAATTGCTCGATTCTTGCCAAAATCTTTCTTCTTGGAGTTATCGG : GTGTACATCACAGATAATGGGGTATACAGGCATTATCTATGCCTCTCCAACGCTTGCCTCCGCCATCAGCAATCTCGTCCCTGCTTTTACTTTCGTCTTGGCTGTCATTTTCAG : GATGGAGAAGATACAGTTGAAAAGATCAACCACTCGAGCCAAAGTGTTGGGCACGGTGGTGTCCATAGCTGGAGCCATTCGTAGTAACTCTGTACAAAGGCCCAAAAATATTAGTGCCTACCACAGCCACACCCAATTTACTACGTCAACCTCTCAGCTCATCTCAATCGAATTGGATGCTTGGTGGCCTTTTCCTCACAACTGAATATTTTTTAGTCCCAATGTGGTATATAGTTCAG : ACATGGATTATGAAGGTGTATCCAGCAGAAGTGACGGTAGTTTTCTTCTACAACTTAACTGTTAGCATCCTAGCTGCTATTGTAGGATTTTTATCTGAACCTGACTCAAACAAATGGATAATTAAACCGGATATCGCACTGGCCTCCATCCTCTGCTCT : GGAATATTGGGTTCATCCTTAAATAATACAATTCACACCTGGGCTTTGCGCGTGAAAGGACCAGTATATGTAGCAATGTTTAAACCATTGTCCATCGCGATTGCAGTTGCCATGGGAGTCATTCTCTTAGGAGATACTCTTTATTTGGGAAG : CATCGTTGGAGCAACGGTAATTGCAATTGGATTCTATACGGTAATGTGGGGAAAGGCAAAAGAGATGTCTGAATATAATGATTCTAGTGATCTCGAGTCGTCTCCAGATCAAAAGTTCCCCTTGTTACACAACTACAAAAATGAAGGCATCTCAAACAAGTGAACCATTAGTTTGAAAGCAGAATGGGACGTCACACAAAAGGCAGGAAAAATTACACCATCTTTTATGAACCAAAAACGAGTATGGGGTTGTACAGGAAGAAACAATATGCCGTTATGGGAAAAAAAGGAGTAGCAAAATTGTTGGCATATATATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGACATTTTATCATTGGATATATATATATCCATCCTTTGTTCTGTACAGCTATTCTGGAAAAATACTTGTTTTACTACTGAC</gDNA_template>
            <first_frame> F  N  V  G  P  *  E  *  K  K  S  V  K  N  F  I  F  N  F  P  Y  K  T  *  L  K  K  Q  L  L  Q  F  Q  C  K  L  S  *  K  K  N  S  Y  F  N  P  G  P  *  H  I  V  F  I  E  H  T  H  S  Y  E  *  I  S  D  F  *  V  K  L  M  S  A  T  R  R  S  *  R  F  *  R  K  K  Q  R  K  N  G  K  Q  *  Q  R  D  N  F  L  Q  R  S  A  T  I  C  S  Y  G  D  Y  G  M  Y  K  C  W  I  K  Y  A  L  Q  S  C  Y  *  Q  R  H  E  *  S  C  L  C  C  L  *  L  W  S  C  G  S  S  A  S  S  F  S  F  L  L  H  Q  :  I  K  N  S  S  T  S  Q  L  L  D  S  C  Q  N  L  S  S  W  S  Y  R  :  V  Y  I  T  D  N  G  V  Y  R  H  Y  L  C  L  S  N  A  C  L  R  H  Q  Q  S  R  P  C  F  Y  F  R  L  G  C  H  F  Q  :  D  G  E  D  T  V  E  K  I  N  H  S  S  Q  S  V  G  H  G  G  V  H  S  W  S  H  S  *  *  L  C  T  K  A  Q  K  Y  *  C  L  P  Q  P  H  P  I  Y  Y  V  N  L  S  A  H  L  N  R  I  G  C  L  V  A  F  S  S  Q  L  N  I  F  *  S  Q  C  G  I  *  F  R :   H  G  L  *  R  C  I  Q  Q  K  *  R  *  F  S  S  T  T  *  L  L  A  S  *  L  L  L  *  D  F  Y  L  N  L  T  Q  T  N  G  *  L  N  R  I  S  H  W  P  P  S  S  A  L :   E  Y  W  V  H  P  *  I  I  Q  F  T  P  G  L  C  A  *  K  D  Q  Y  M  *  Q  C  L  N  H  C  P  S  R  L  Q  L  P  W  E  S  F  S  *  E  I  L  F  I  W  E   : A  S  L  E  Q  R  *  L  Q  L  D  S  I  R  *  C  G  E  R  Q  K  R  C  L  N  I  M  I  L  V  I  S  S  R  L  Q  I  K  S  S  P  C  Y  T  T  T  K  M  K  A  S  Q  T  S  E  P  L  V  *  K  Q  N  G  T  S  H  K  R  Q  E  K  L  H  H  L  L  *  T  K  N  E  Y  G  V  V  Q  E  E  T  I  C  R  Y  G  K  K  R  S  S  K  I  V  G  I  Y  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L  T  F  Y  H  W  I  Y  I  Y  P  S  F  V  L  Y  S  Y  S  G  K  I  L  V  L  L  L   </first_frame>
            <second_frame>  S  M  *  D  L  R  N  K  K  K  V  *  K  I  S  S  L  I  F  P  I  K  L  S  *  K  N  S  C  F  N  F  N  V  S  L  A  E  K  K  T  V  T  L  I  L  D  H  N  I  S  Y  L  L  N  T  H  T  R  M  N  K  Y  Q  I  F  R  *  S  S  C  P  P  R  V  E  V  E  D  F  E  E  K  N  R  G  K  M  G  S  N  N  R  E  T  T  F  Y  K  E  V  L  P  F  A  A  M  V  T  M  E  C  I  N  V  G  L  N  T  L  Y  K  A  A  T  N  K  G  M  S  N  H  V  F  V  V  Y  S  Y  G  L  A  A  L  L  L  L  P  S  P  F  F  S  T  R :   S  R  I  L  P  P  L  N  C  S  I  L  A  K  I  F  L  L  G  V  I  G :   C  T  S  Q  I  M  G  Y  T  G  I  I  Y  A  S  P  T  L  A  S  A  I  S  N  L  V  P  A  F  T  F  V  L  A  V  I  F  R :   M  E  K  I  Q  L  K  R  S  T  T  R  A  K  V  L  G  T  V  V  S  I  A  G  A  I  R  S  N  S  V  Q  R  P  K  N  I  S  A  Y  H  S  H  T  Q  F  T  T  S  T  S  Q  L  I  S  I  E  L  D  A  W  W  P  F  P  H  N  *  I  F  F  S  P  N  V  V  Y  S  S   : D  M  D  Y  E  G  V  S  S  R  S  D  G  S  F  L  L  Q  L  N  C  *  H  P  S  C  Y  C  R  I  F  I  *  T  *  L  K  Q  M  D  N  *  T  G  Y  R  T  G  L  H  P  L  L   : W  N  I  G  F  I  L  K  *  Y  N  S  H  L  G  F  A  R  E  R  T  S  I  C  S  N  V  *  T  I  V  H  R  D  C  S  C  H  G  S  H  S  L  R  R  Y  S  L  F  G  K  :  H  R  W  S  N  G  N  C  N  W  I  L  Y  G  N  V  G  K  G  K  R  D  V  *  I  *  *  F  *  *  S  R  V  V  S  R  S  K  V  P  L  V  T  Q  L  Q  K  *  R  H  L  K  Q  V  N  H  *  F  E  S  R  M  G  R  H  T  K  G  R  K  N  Y  T  I  F  Y  E  P  K  T  S  M  G  L  Y  R  K  K  Q  Y  A  V  M  G  K  K  G  V  A  K  L  L  A  Y  I  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  H  F  I  I  G  Y  I  Y  I  H  P  L  F  C  T  A  I  L  E  K  Y  L  F  Y  Y  *  </second_frame>
            <third_frame>   Q  C  R  T  L  G  I  K  K  K  C  K  K  F  H  L  *  F  S  L  *  N  L  A  K  K  T  V  A  S  I  S  M  *  A  *  L  K  K  K  Q  L  L  *  S  W  T  I  T  Y  R  I  Y  *  T  H  T  L  V  *  I  N  I  R  F  L  G  K  A  H  V  R  H  A  *  K  L  K  I  L  K  K  K  T  E  E  K  W  E  A  I  T  E  R  Q  L  F  T  K  K  C  Y  H  L  Q  L  W  *  L  W  N  V  *  M  L  D  *  I  R  F  T  K  L  L  L  T  K  A  *  V  I  M  S  L  L  F  I  V  M  V  L  R  L  F  C  F  F  L  L  L  S  S  P  P   : D  Q  E  F  F  H  L  S  I  A  R  F  L  P  K  S  F  F  L  E  L  S   : G  V  H  H  R  *  W  G  I  Q  A  L  S  M  P  L  Q  R  L  P  P  P  S  A  I  S  S  L  L  L  L  S  S  W  L  S  F  S   : G  W  R  R  Y  S  *  K  D  Q  P  L  E  P  K  C  W  A  R  W  C  P  *  L  E  P  F  V  V  T  L  Y  K  G  P  K  I  L  V  P  T  T  A  T  P  N  L  L  R  Q  P  L  S  S  S  Q  S  N  W  M  L  G  G  L  F  L  T  T  E  Y  F  L  V  P  M  W  Y  I  V  Q  :  T  W  I  M  K  V  Y  P  A  E  V  T  V  V  F  F  Y  N  L  T  V  S  I  L  A  A  I  V  G  F  L  S  E  P  D  S  N  K  W  I  I  K  P  D  I  A  L  A  S  I  L  C  S  :  G  I  L  G  S  S  L  N  N  T  I  H  T  W  A  L  R  V  K  G  P  V  Y  V  A  M  F  K  P  L  S  I  A  I  A  V  A  M  G  V  I  L  L  G  D  T  L  Y  L  G  S :   I  V  G  A  T  V  I  A  I  G  F  Y  T  V  M  W  G  K  A  K  E  M  S  E  Y  N  D  S  S  D  L  E  S  S  P  D  Q  K  F  P  L  L  H  N  Y  K  N  E  G  I  S  N  K  *  T  I  S  L  K  A  E  W  D  V  T  Q  K  A  G  K  I  T  P  S  F  M  N  Q  K  R  V  W  G  C  T  G  R  N  N  M  P  L  W  E  K  K  E  *  Q  N  C  W  H  I  Y  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D  I  L  S  L  D  I  Y  I  S  I  L  C  S  V  Q  L  F  W  K  N  T  C  F  T  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4756" stop="4497"/>
                    <exon start="4400" stop="4335"/>
                    <exon start="3466" stop="3353"/>
                    <exon start="2738" stop="2534"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCPPRVEVEDFEEKNRGKMGSNNRETTFYKEVLPFAAMVTMECINVGLNTLYKAATNKGMSNHVFVVYSYGLAALLLLPSPFFSTRSRILPPLNCSILAKIFLLGVIGCTSQIMGYTGIIYASPTLASAISNLVPAFTFVLAVIFRMEKIQLKRSTTRAKVLGTVVSIAGAIRSNSVQRPKNISAYHSHTQFTTSTSQLISIELDAWWPFPHN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2670" stop="2500"/>
                    <exon start="2307" stop="2149"/>
                    <exon start="2043" stop="1892"/>
                    <exon start="1809" stop="1647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEPFVVTLYKGPKILVPTTATPNLLRQPLSSSQSNWMLGGLFLTTEYFLVPMWYIVQTWIMKVYPAEVTVVFFYNLTVSILAAIVGFLSEPDSNKWIIKPDIALASILCSGILGSSLNNTIHTWALRVKGPVYVAMFKPLSIAIAVAMGVILLGDTLYLGSIVGATVIAIGFYTVMWGKAKEMSEYNDSSDLESSPDQKFPLLHNYKNEGISNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1579" stop="1277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNEYGVVQEETICRYGKKRSSKIVGIYIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLLTFYHWIYIYPSFVLYSYSGKILVLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7016" PGL_stop="7283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7016" e_stop="7283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="7016" e_stop="7283" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7016" stop="7283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNGCAAGGCCTGGACGCTAAGCTACAGGTTCGTCGTTGCAGCTATACCGGACGTCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTGTGGCCGACATACAATTAATACTTAATGAATTATTACTTTCAGTTGCTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  L  Q  G  L  D  A  K  L  Q  V  R  R  C  S  Y  T  G  R  Q  Y  S  S  G  V  W  *  V  L  M  L  S  R  M  L  L  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  K  L  C  I  G  A  I  V  A  D  I  Q  L  I  L  N  E  L  L  L  S  V  A  </first_frame>
            <second_frame>  F  F  F  F  F  F  C  K  A  W  T  L  S  Y  R  F  V  V  A  A  I  P  D  V  S  I  H  P  E  F  G  R  S  S  C  F  R  G  C  Y  C  F  T  F  *  R  S  F  R  V  E  L  V  E  H  V  P  L  A  F  L  S  C  F  G  S  N  F  V  L  V  L  L  W  P  T  Y  N  *  Y  L  M  N  Y  Y  F  Q  L  L </second_frame>
            <third_frame>   F  F  F  F  F  F  A  R  P  G  R  *  A  T  G  S  S  L  Q  L  Y  R  T  S  V  F  I  R  S  L  V  G  P  H  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  W  S  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  C  G  R  H  T  I  N  T  *  *  I  I  T  F  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001M12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8900" PGL_stop="10312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8900" e_stop="10312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="8900" e_stop="10312" e_length="1413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8900" stop="10312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8918" stop="9378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8978" stop="9710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8984" stop="9439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9022" stop="9469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9022" stop="9422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="9376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9365" stop="9713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAAGAAGGAAGGGAAAAAGAAAGGAGTATATGAGTCTTGGAAAGTCAGGTGAGCAGAAAATTGAGCCTAAATAGGCAGGCACAGCCTGGCCAGATCAACGAAGCTTCTCTATAACATAGAATTTCTTGAGATCTAACGATAATCAAAGTCAACAATGGGGCTATTCAGCTATACTGTCGCCGGCGGCGGATTTATACTAATCGGCGCTTGGGAATCTCTGGTCTCTTCTTCTGGTGCCCTGAAAAATTCATCACCGTCGTCCACTACCCAATCGCCGCCACAAAATCCATCGACAGATAAGCATGAGCAAGATTCTGTTTTTTCTTCATCGGTCACCTTTGTATTAATCTTAATCCTTTCGTTCCTTTTCGTTCTCGATTCCTTGTTATCCTTTTTCGACGCACTCAACTCCAAAGACAACATTGGTTCCGTCCTTCAATTGCAGGTTATCGCGATTTCTCTTCTTTTCTTTCTCTATTCGGTATTAGGTCTCATGACCCGCTTGAAAAGTTCTTTTCATTTACCTTCACCGATCCTCAATTTGCTTTGCCTCTTCGCTTTTGCTGAGGAATTTTTGTTGTTTTATCTTCAAAGGAAAGACCCAAGTGGAGTTGAAAATCGTTACTATAATCTCTTGCTTGTGCCTATTGCTATTTGTGCATTTTGTTCATTTCTAGAATTGAAAAATCCCAAATCAAATTACACTAGATTAGGACGTGGGATTGGGTTAATCTTGCAAGGGACGTGGACTCTTCAAATGGGGTTTGCTTTTTTCTCCGATTTGATTGCACAGGGATGCTATTTACATCAAAGGAGTAGAGGTAATTACACGGTTAAGTGTAAAGGTCATCCTCAGTACCATCGAGGTGGAGCTATTGCTACCCTTCAGTTCAATTGCCACCTTGCTCTTCTTGTGACTGTGATTACTTTTGTATACTCAATTGTGTGTAAAAAACATGGCATTGGCCGTGAACATATGCGGTATAGACCTATTGGAGCTGAGATGCAACACTTGGAAATCGATAGTCAAGCTCATTTTACATTGGAGTCTGATGAAGAGGATGACAATGAGAATGGGATAAAAGAAGAGATGAATGTTGAAATGCAAAAGGCTATTGTACCTGTTCCTGAATCAGAAACTAATGGCTATCATACCCATCCTTGAGGAAACCCATGGTTCATTTTTTATGTTACTGGGTATAAAGATATATTCTTTGCAGAGGGGTTATGGTTTAGAGGTTGGGGTTCCCTTTGTATAAAGAATTTACATATAGAAAAGAGAAAGTTTCAGTCTTTTTGTATTTGATGATTCTAGTTCAAATTGTAATGTTGTCTTAGAAATTTTCTTTGAAGTGATTTAAGTATATTTTCCTTTATTGTGTGTCTATGGAAGACTTACTCTTTGATAGTA</gDNA_template>
            <first_frame> C  K  K  E  G  K  K  K  G  V  Y  E  S  W  K  V  R  *  A  E  N  *  A  *  I  G  R  H  S  L  A  R  S  T  K  L  L  Y  N  I  E  F  L  E  I  *  R  *  S  K  S  T  M  G  L  F  S  Y  T  V  A  G  G  G  F  I  L  I  G  A  W  E  S  L  V  S  S  S  G  A  L  K  N  S  S  P  S  S  T  T  Q  S  P  P  Q  N  P  S  T  D  K  H  E  Q  D  S  V  F  S  S  S  V  T  F  V  L  I  L  I  L  S  F  L  F  V  L  D  S  L  L  S  F  F  D  A  L  N  S  K  D  N  I  G  S  V  L  Q  L  Q  V  I  A  I  S  L  L  F  F  L  Y  S  V  L  G  L  M  T  R  L  K  S  S  F  H  L  P  S  P  I  L  N  L  L  C  L  F  A  F  A  E  E  F  L  L  F  Y  L  Q  R  K  D  P  S  G  V  E  N  R  Y  Y  N  L  L  L  V  P  I  A  I  C  A  F  C  S  F  L  E  L  K  N  P  K  S  N  Y  T  R  L  G  R  G  I  G  L  I  L  Q  G  T  W  T  L  Q  M  G  F  A  F  F  S  D  L  I  A  Q  G  C  Y  L  H  Q  R  S  R  G  N  Y  T  V  K  C  K  G  H  P  Q  Y  H  R  G  G  A  I  A  T  L  Q  F  N  C  H  L  A  L  L  V  T  V  I  T  F  V  Y  S  I  V  C  K  K  H  G  I  G  R  E  H  M  R  Y  R  P  I  G  A  E  M  Q  H  L  E  I  D  S  Q  A  H  F  T  L  E  S  D  E  E  D  D  N  E  N  G  I  K  E  E  M  N  V  E  M  Q  K  A  I  V  P  V  P  E  S  E  T  N  G  Y  H  T  H  P  *  G  N  P  W  F  I  F  Y  V  T  G  Y  K  D  I  F  F  A  E  G  L  W  F  R  G  W  G  S  L  C  I  K  N  L  H  I  E  K  R  K  F  Q  S  F  C  I  *  *  F  *  F  K  L  *  C  C  L  R  N  F  L  *  S  D  L  S  I  F  S  F  I  V  C  L  W  K  T  Y  S  L  I  V </first_frame>
            <second_frame>  V  R  R  K  G  K  R  K  E  Y  M  S  L  G  K  S  G  E  Q  K  I  E  P  K  *  A  G  T  A  W  P  D  Q  R  S  F  S  I  T  *  N  F  L  R  S  N  D  N  Q  S  Q  Q  W  G  Y  S  A  I  L  S  P  A  A  D  L  Y  *  S  A  L  G  N  L  W  S  L  L  L  V  P  *  K  I  H  H  R  R  P  L  P  N  R  R  H  K  I  H  R  Q  I  S  M  S  K  I  L  F  F  L  H  R  S  P  L  Y  *  S  *  S  F  R  S  F  S  F  S  I  P  C  Y  P  F  S  T  H  S  T  P  K  T  T  L  V  P  S  F  N  C  R  L  S  R  F  L  F  F  S  F  S  I  R  Y  *  V  S  *  P  A  *  K  V  L  F  I  Y  L  H  R  S  S  I  C  F  A  S  S  L  L  L  R  N  F  C  C  F  I  F  K  G  K  T  Q  V  E  L  K  I  V  T  I  I  S  C  L  C  L  L  L  F  V  H  F  V  H  F  *  N  *  K  I  P  N  Q  I  T  L  D  *  D  V  G  L  G  *  S  C  K  G  R  G  L  F  K  W  G  L  L  F  S  P  I  *  L  H  R  D  A  I  Y  I  K  G  V  E  V  I  T  R  L  S  V  K  V  I  L  S  T  I  E  V  E  L  L  L  P  F  S  S  I  A  T  L  L  F  L  *  L  *  L  L  L  Y  T  Q  L  C  V  K  N  M  A  L  A  V  N  I  C  G  I  D  L  L  E  L  R  C  N  T  W  K  S  I  V  K  L  I  L  H  W  S  L  M  K  R  M  T  M  R  M  G  *  K  K  R  *  M  L  K  C  K  R  L  L  Y  L  F  L  N  Q  K  L  M  A  I  I  P  I  L  E  E  T  H  G  S  F  F  M  L  L  G  I  K  I  Y  S  L  Q  R  G  Y  G  L  E  V  G  V  P  F  V  *  R  I  Y  I  *  K  R  E  S  F  S  L  F  V  F  D  D  S  S  S  N  C  N  V  V  L  E  I  F  F  E  V  I  *  V  Y  F  P  L  L  C  V  Y  G  R  L  T  L  *  *   </second_frame>
            <third_frame>   *  E  G  R  E  K  E  R  S  I  *  V  L  E  S  Q  V  S  R  K  L  S  L  N  R  Q  A  Q  P  G  Q  I  N  E  A  S  L  *  H  R  I  S  *  D  L  T  I  I  K  V  N  N  G  A  I  Q  L  Y  C  R  R  R  R  I  Y  T  N  R  R  L  G  I  S  G  L  F  F  W  C  P  E  K  F  I  T  V  V  H  Y  P  I  A  A  T  K  S  I  D  R  *  A  *  A  R  F  C  F  F  F  I  G  H  L  C  I  N  L  N  P  F  V  P  F  R  S  R  F  L  V  I  L  F  R  R  T  Q  L  Q  R  Q  H  W  F  R  P  S  I  A  G  Y  R  D  F  S  S  F  L  S  L  F  G  I  R  S  H  D  P  L  E  K  F  F  S  F  T  F  T  D  P  Q  F  A  L  P  L  R  F  C  *  G  I  F  V  V  L  S  S  K  E  R  P  K  W  S  *  K  S  L  L  *  S  L  A  C  A  Y  C  Y  L  C  I  L  F  I  S  R  I  E  K  S  Q  I  K  L  H  *  I  R  T  W  D  W  V  N  L  A  R  D  V  D  S  S  N  G  V  C  F  F  L  R  F  D  C  T  G  M  L  F  T  S  K  E  *  R  *  L  H  G  *  V  *  R  S  S  S  V  P  S  R  W  S  Y  C  Y  P  S  V  Q  L  P  P  C  S  S  C  D  C  D  Y  F  C  I  L  N  C  V  *  K  T  W  H  W  P  *  T  Y  A  V  *  T  Y  W  S  *  D  A  T  L  G  N  R  *  S  S  S  F  Y  I  G  V  *  *  R  G  *  Q  *  E  W  D  K  R  R  D  E  C  *  N  A  K  G  Y  C  T  C  S  *  I  R  N  *  W  L  S  Y  P  S  L  R  K  P  M  V  H  F  L  C  Y  W  V  *  R  Y  I  L  C  R  G  V  M  V  *  R  L  G  F  P  L  Y  K  E  F  T  Y  R  K  E  K  V  S  V  F  L  Y  L  M  I  L  V  Q  I  V  M  L  S  *  K  F  S  L  K  *  F  K  Y  I  F  L  Y  C  V  S  M  E  D  L  L  F  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9044" stop="10066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSTMGLFSYTVAGGGFILIGAWESLVSSSGALKNSSPSSTTQSPPQNPSTDKHEQDSVFSSSVTFVLILILSFLFVLDSLLSFFDALNSKDNIGSVLQLQVIAISLLFFLYSVLGLMTRLKSSFHLPSPILNLLCLFAFAEEFLLFYLQRKDPSGVENRYYNLLLVPIAICAFCSFLELKNPKSNYTRLGRGIGLILQGTWTLQMGFAFFSDLIAQGCYLHQRSRGNYTVKCKGHPQYHRGGAIATLQFNCHLALLVTVITFVYSIVCKKHGIGREHMRYRPIGAEMQHLEIDSQAHFTLESDEEDDNENGIKEEMNVEMQKAIVPVPESETNGYHTHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="10340" PGL_stop="9539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10340" e_stop="9539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="10340" e_stop="9539" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10340" stop="9735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10280" stop="9539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTTTTGTTAAGAAAGTTAGTCGTCATTACTATCAAAGAGTAAGTCTTCCATAGACACACAATAAAGGAAAATATACTTAAATCACTTCAAAGAAAATTTCTAAGACAACATTACAATTTGAACTAGAATCATCAAATACAAAAAGACTGAAACTTTCTCTTTTCTATATGTAAATTCTTTATACAAAGGGAACCCCAACCTCTAAACCATAACCCCTCTGCAAAGAATATATCTTTATACCCAGTAACATAAAAAATGAACCATGGGTTTCCTCAAGGATGGGTATGATAGCCATTAGTTTCTGATTCAGGAACAGGTACAATAGCCTTTTGCATTTCAACATTCATCTCTTCTTTTATCCCATTCTCATTGTCATCCTCTTCATCAGACTCCAATGTAAAATGAGCTTGACTATCGATTTCCAAGTGTTGCATCTCAGCTCCAATAGGTCTATACCGCATATGTTCACGGCCAATGCCATGTTTTTTACACACAATTGAGTATACAAAAGTAATCACAGTCACAAGAAGAGCAAGGTGGCAATTGAACTGAAGGGTAGCAATAGCTCCACCTCGATGGTACTGAGGATGACCTTTACACTTAACCGTGTAATTACCTCTACTCCTTTGATGTAAATAGCATCCCTGTGCAATCAAATCGGAGAAAAAAGCAAACCCCATTTGAAGAGTCCACGTCCCTTGCAAGATTAACCCAATCCCACGTCCTAATCTAGTGTAATTTGATTTGGGATTTTTCAATTCTAGAAATGAACAAAATGCACAAATAGCAATAGGCACAAG</gDNA_template>
            <first_frame> S  F  C  *  E  S  *  S  S  L  L  S  K  S  K  S  S  I  D  T  Q  *  R  K  I  Y  L  N  H  F  K  E  N  F  *  D  N  I  T  I  *  T  R  I  I  K  Y  K  K  T  E  T  F  S  F  L  Y  V  N  S  L  Y  K  G  N  P  N  L  *  T  I  T  P  L  Q  R  I  Y  L  Y  T  Q  *  H  K  K  *  T  M  G  F  L  K  D  G  Y  D  S  H  *  F  L  I  Q  E  Q  V  Q  *  P  F  A  F  Q  H  S  S  L  L  L  S  H  S  H  C  H  P  L  H  Q  T  P  M  *  N  E  L  D  Y  R  F  P  S  V  A  S  Q  L  Q  *  V  Y  T  A  Y  V  H  G  Q  C  H  V  F  Y  T  Q  L  S  I  Q  K  *  S  Q  S  Q  E  E  Q  G  G  N  *  T  E  G  *  Q  *  L  H  L  D  G  T  E  D  D  L  Y  T  *  P  C  N  Y  L  Y  S  F  D  V  N  S  I  P  V  Q  S  N  R  R  K  K  Q  T  P  F  E  E  S  T  S  L  A  R  L  T  Q  S  H  V  L  I  *  C  N  L  I  W  D  F  S  I  L  E  M  N  K  M  H  K  *  Q  *  A  Q  </first_frame>
            <second_frame>  P  F  V  K  K  V  S  R  H  Y  Y  Q  R  V  S  L  P  *  T  H  N  K  G  K  Y  T  *  I  T  S  K  K  I  S  K  T  T  L  Q  F  E  L  E  S  S  N  T  K  R  L  K  L  S  L  F  Y  M  *  I  L  Y  T  K  G  T  P  T  S  K  P  *  P  L  C  K  E  Y  I  F  I  P  S  N  I  K  N  E  P  W  V  S  S  R  M  G  M  I  A  I  S  F  *  F  R  N  R  Y  N  S  L  L  H  F  N  I  H  L  F  F  Y  P  I  L  I  V  I  L  F  I  R  L  Q  C  K  M  S  L  T  I  D  F  Q  V  L  H  L  S  S  N  R  S  I  P  H  M  F  T  A  N  A  M  F  F  T  H  N  *  V  Y  K  S  N  H  S  H  K  K  S  K  V  A  I  E  L  K  G  S  N  S  S  T  S  M  V  L  R  M  T  F  T  L  N  R  V  I  T  S  T  P  L  M  *  I  A  S  L  C  N  Q  I  G  E  K  S  K  P  H  L  K  S  P  R  P  L  Q  D  *  P  N  P  T  S  *  S  S  V  I  *  F  G  I  F  Q  F  *  K  *  T  K  C  T  N  S  N  R  H  K </second_frame>
            <third_frame>   L  L  L  R  K  L  V  V  I  T  I  K  E  *  V  F  H  R  H  T  I  K  E  N  I  L  K  S  L  Q  R  K  F  L  R  Q  H  Y  N  L  N  *  N  H  Q  I  Q  K  D  *  N  F  L  F  S  I  C  K  F  F  I  Q  R  E  P  Q  P  L  N  H  N  P  S  A  K  N  I  S  L  Y  P  V  T  *  K  M  N  H  G  F  P  Q  G  W  V  *  *  P  L  V  S  D  S  G  T  G  T  I  A  F  C  I  S  T  F  I  S  S  F  I  P  F  S  L  S  S  S  S  S  D  S  N  V  K  *  A  *  L  S  I  S  K  C  C  I  S  A  P  I  G  L  Y  R  I  C  S  R  P  M  P  C  F  L  H  T  I  E  Y  T  K  V  I  T  V  T  R  R  A  R  W  Q  L  N  *  R  V  A  I  A  P  P  R  W  Y  *  G  *  P  L  H  L  T  V  *  L  P  L  L  L  *  C  K  *  H  P  C  A  I  K  S  E  K  K  A  N  P  I  *  R  V  H  V  P  C  K  I  N  P  I  P  R  P  N  L  V  *  F  D  L  G  F  F  N  S  R  N  E  Q  N  A  Q  I  A  I  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10033" stop="9839"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRNRYNSLLHFNIHLFFYPILIVILFIRLQCKMSLTIDFQVLHLSSNRSIPHMFTANAMFFTHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="15257" PGL_stop="14016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15257" e_stop="15108"/>
            <exon e_start="14947" e_stop="14016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.550" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15257" e_stop="15108" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.550">
            <gDNA_intron_boundary i_start="15107" i_stop="14948" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="14947" e_stop="14016" e_length="932"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15257" stop="15108"/>
              <exon start="14947" stop="14390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540973" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14639" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540975" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14486" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294217" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTATACACATAACACGGATGGTGAAATTATTCATATCAAGTCCTTGGGAGGTCATATAGTTAAAGCTATTAGAGCGGCTACCTCAAGATTGACCTGTGGTGAGATTGCGGTACCAGATACCAACAAGTCAAAAGTTGTTGAGATCGA : ACTTGAAAATGCACCACTCTGCCAACAAGATTCAGGCAGCACGGAGGGTACGGATAAAAAGCCGGAGAATGGGATAGTAGAAATTCTAAAAGTAGTACTACCTCTACTGCCAGTATGGACTATGCTTCTGATGTTTGCAGTGATTTTTCAACAACCTGCAACATTTTTCACTAAACAAGGTATGACAATGAGGAGAAACATCGGAAGCAGCTTCCGAATTCCACCAGCTGCACTTCAGAGTTCAATCACAATATCTATAATCCTGCTTATGCCTCTTTACGACACGTGCTTTATCCCCTTCATTCGTGTTTTGACACGTAATGAGAAAGGCATCACTGTGATGCAGAGAATGGGAATAGGGATGTTTCTTTCAGTGATAGCAATGATAATTGCTGCTGTTACCGAAAGAAAAAGACTGGATATTGCCAGAAATGTAGGTACTTTAACTTCAGAATTCGAAGCTTTGCCAATGAGCATATTTTGGTTGCTGCCTCAGTACATCTTATTGGGAATTTCAGATATATTCACAGTTGTTGGTATGCAAGAGTTCTTTTACTCTGAAGTTCCGATAAATATGAGAACTTTAGGCATAGCTCTTTATACTAGTGTATTTGGTTGTGGTAGTTTCTTCAGCTCATTCCTTATAACAGTGATTGAACATTTGACAAGTTCAATAGGAGAAAAGCAGAACTGGTTCGCCGATGACATGAGCAGAGCCCGTTTAGACAACTATTACTGGTTTCTGGCATTGTCAAGTGCAGCCAGTTTTATGATGTTTATGGTTTTCTGTCGATTTTATAGAAGCAGGACAGTTAATTAGAGTGTTGGTAGTGACTGATAATTTGTTATTGTGGAATGTTGTGTTTTGCACATTCATTTTTCTAAGTAGAAAGTGAAGGTTCTGCACTTGTATATAAAGGAAGATATATCTA</gDNA_template>
            <first_frame> V  L  Y  T  *  H  G  W  *  N  Y  S  Y  Q  V  L  G  R  S  Y  S  *  S  Y  *  S  G  Y  L  K  I  D  L  W  *  D  C  G  T  R  Y  Q  Q  V  K  S  C  *  D  R  :  T  *  K  C  T  T  L  P  T  R  F  R  Q  H  G  G  Y  G  *  K  A  G  E  W  D  S  R  N  S  K  S  S  T  T  S  T  A  S  M  D  Y  A  S  D  V  C  S  D  F  S  T  T  C  N  I  F  H  *  T  R  Y  D  N  E  E  K  H  R  K  Q  L  P  N  S  T  S  C  T  S  E  F  N  H  N  I  Y  N  P  A  Y  A  S  L  R  H  V  L  Y  P  L  H  S  C  F  D  T  *  *  E  R  H  H  C  D  A  E  N  G  N  R  D  V  S  F  S  D  S  N  D  N  C  C  C  Y  R  K  K  K  T  G  Y  C  Q  K  C  R  Y  F  N  F  R  I  R  S  F  A  N  E  H  I  L  V  A  A  S  V  H  L  I  G  N  F  R  Y  I  H  S  C  W  Y  A  R  V  L  L  L  *  S  S  D  K  Y  E  N  F  R  H  S  S  L  Y  *  C  I  W  L  W  *  F  L  Q  L  I  P  Y  N  S  D  *  T  F  D  K  F  N  R  R  K  A  E  L  V  R  R  *  H  E  Q  S  P  F  R  Q  L  L  L  V  S  G  I  V  K  C  S  Q  F  Y  D  V  Y  G  F  L  S  I  L  *  K  Q  D  S  *  L  E  C  W  *  *  L  I  I  C  Y  C  G  M  L  C  F  A  H  S  F  F  *  V  E  S  E  G  S  A  L  V  Y  K  G  R  Y  I   </first_frame>
            <second_frame>  F  Y  T  H  N  T  D  G  E  I  I  H  I  K  S  L  G  G  H  I  V  K  A  I  R  A  A  T  S  R  L  T  C  G  E  I  A  V  P  D  T  N  K  S  K  V  V  E  I  E :   L  E  N  A  P  L  C  Q  Q  D  S  G  S  T  E  G  T  D  K  K  P  E  N  G  I  V  E  I  L  K  V  V  L  P  L  L  P  V  W  T  M  L  L  M  F  A  V  I  F  Q  Q  P  A  T  F  F  T  K  Q  G  M  T  M  R  R  N  I  G  S  S  F  R  I  P  P  A  A  L  Q  S  S  I  T  I  S  I  I  L  L  M  P  L  Y  D  T  C  F  I  P  F  I  R  V  L  T  R  N  E  K  G  I  T  V  M  Q  R  M  G  I  G  M  F  L  S  V  I  A  M  I  I  A  A  V  T  E  R  K  R  L  D  I  A  R  N  V  G  T  L  T  S  E  F  E  A  L  P  M  S  I  F  W  L  L  P  Q  Y  I  L  L  G  I  S  D  I  F  T  V  V  G  M  Q  E  F  F  Y  S  E  V  P  I  N  M  R  T  L  G  I  A  L  Y  T  S  V  F  G  C  G  S  F  F  S  S  F  L  I  T  V  I  E  H  L  T  S  S  I  G  E  K  Q  N  W  F  A  D  D  M  S  R  A  R  L  D  N  Y  Y  W  F  L  A  L  S  S  A  A  S  F  M  M  F  M  V  F  C  R  F  Y  R  S  R  T  V  N  *  S  V  G  S  D  *  *  F  V  I  V  E  C  C  V  L  H  I  H  F  S  K  *  K  V  K  V  L  H  L  Y  I  K  E  D  I  S  </second_frame>
            <third_frame>   F  I  H  I  T  R  M  V  K  L  F  I  S  S  P  W  E  V  I  *  L  K  L  L  E  R  L  P  Q  D  *  P  V  V  R  L  R  Y  Q  I  P  T  S  Q  K  L  L  R  S   : N  L  K  M  H  H  S  A  N  K  I  Q  A  A  R  R  V  R  I  K  S  R  R  M  G  *  *  K  F  *  K  *  Y  Y  L  Y  C  Q  Y  G  L  C  F  *  C  L  Q  *  F  F  N  N  L  Q  H  F  S  L  N  K  V  *  Q  *  G  E  T  S  E  A  A  S  E  F  H  Q  L  H  F  R  V  Q  S  Q  Y  L  *  S  C  L  C  L  F  T  T  R  A  L  S  P  S  F  V  F  *  H  V  M  R  K  A  S  L  *  C  R  E  W  E  *  G  C  F  F  Q  *  *  Q  *  *  L  L  L  L  P  K  E  K  D  W  I  L  P  E  M  *  V  L  *  L  Q  N  S  K  L  C  Q  *  A  Y  F  G  C  C  L  S  T  S  Y  W  E  F  Q  I  Y  S  Q  L  L  V  C  K  S  S  F  T  L  K  F  R  *  I  *  E  L  *  A  *  L  F  I  L  V  Y  L  V  V  V  V  S  S  A  H  S  L  *  Q  *  L  N  I  *  Q  V  Q  *  E  K  S  R  T  G  S  P  M  T  *  A  E  P  V  *  T  T  I  T  G  F  W  H  C  Q  V  Q  P  V  L  *  C  L  W  F  S  V  D  F  I  E  A  G  Q  L  I  R  V  L  V  V  T  D  N  L  L  L  W  N  V  V  F  C  T  F  I  F  L  S  R  K  *  R  F  C  T  C  I  *  R  K  I  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15256" stop="15108"/>
                    <exon start="14947" stop="14128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYTHNTDGEIIHIKSLGGHIVKAIRAATSRLTCGEIAVPDTNKSKVVEIELENAPLCQQDSGSTEGTDKKPENGIVEILKVVLPLLPVWTMLLMFAVIFQQPATFFTKQGMTMRRNIGSSFRIPPAALQSSITISIILLMPLYDTCFIPFIRVLTRNEKGITVMQRMGIGMFLSVIAMIIAAVTERKRLDIARNVGTLTSEFEALPMSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPINMRTLGIALYTSVFGCGSFFSSFLITVIEHLTSSIGEKQNWFADDMSRARLDNYYWFLALSSAASFMMFMVFCRFYRSRTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="20391" PGL_stop="24145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20391" e_stop="20535"/>
            <exon e_start="20679" e_stop="20942"/>
            <exon e_start="21537" e_stop="21686"/>
            <exon e_start="21945" e_stop="22078"/>
            <exon e_start="22188" e_stop="22401"/>
            <exon e_start="22564" e_stop="22709"/>
            <exon e_start="22796" e_stop="23020"/>
            <exon e_start="23109" e_stop="23311"/>
            <exon e_start="23454" e_stop="23697"/>
            <exon e_start="23778" e_stop="24145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.012" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20391" e_stop="20535" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.012">
            <gDNA_intron_boundary i_start="20536" i_stop="20678" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20679" e_stop="20942" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20943" i_stop="21536" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21537" e_stop="21686" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21945" e_stop="22078" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22188" e_stop="22401" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22564" e_stop="22709" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22710" i_stop="22795" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22796" e_stop="23020" e_length="225"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="23109" e_stop="23311" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23454" e_stop="23697" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="23778" e_stop="24145" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20391" stop="20535"/>
              <exon start="20679" stop="20748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20396" stop="20535"/>
              <exon start="20679" stop="20942"/>
              <exon start="21537" stop="21686"/>
              <exon start="21945" stop="21989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20409" stop="20535"/>
              <exon start="20679" stop="20942"/>
              <exon start="21537" stop="21686"/>
              <exon start="21945" stop="21989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20422" stop="20535"/>
              <exon start="20679" stop="20942"/>
              <exon start="21537" stop="21686"/>
              <exon start="21945" stop="22078"/>
              <exon start="22188" stop="22401"/>
              <exon start="22564" stop="22709"/>
              <exon start="22796" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="24003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20484" stop="20535"/>
              <exon start="20679" stop="20942"/>
              <exon start="21537" stop="21686"/>
              <exon start="21945" stop="22078"/>
              <exon start="22188" stop="22263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20813" stop="20942"/>
              <exon start="21537" stop="21686"/>
              <exon start="21945" stop="22078"/>
              <exon start="22188" stop="22265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22052" stop="22078"/>
              <exon start="22188" stop="22401"/>
              <exon start="22564" stop="22709"/>
              <exon start="22796" stop="23020"/>
              <exon start="23109" stop="23230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22955" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="23997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22955" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="23929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22955" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="24069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23466" stop="23697"/>
              <exon start="23778" stop="24145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGTGATATTAATTTCTCGTATAAACAATGTCTTTTGTTATGCTCAAGAATCTCTTGCTATCCTCTCTCCGTAAATTCATCCACAAAGATTTCCATGAGATCTTTGACAAAATGACTCTCATCGATAAATTATTTTTTTTG : ATTGTTCATTTTATTGATAAACATAACTTTTGGCACCGGCTACCGGTATTCTTCGGGTTACTTTATCTTGGAGCACGGCGGAGTCTTCACCAGCAATATAATTTGATCAACGTCGGTAGAACACCTACCGGAGTTCGATCAAATCCGGCAGATTACCCTTACAGAACTGCTGATGGAAAATTCAATGACCCTTTTAATGAAGGAACAGGCAGTCAATTTTCTTTCTTTGGCAGGAATATGATGCCTCTTCATCAGAATAATAAG : TTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG : GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG : AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG : GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA : AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</gDNA_template>
            <first_frame> L  Q  V  I  L  I  S  R  I  N  N  V  F  C  Y  A  Q  E  S  L  A  I  L  S  P  *  I  H  P  Q  R  F  P  *  D  L  *  Q  N  D  S  H  R  *  I  I  F  F   : D  C  S  F  Y  *  *  T  *  L  L  A  P  A  T  G  I  L  R  V  T  L  S  W  S  T  A  E  S  S  P  A  I  *  F  D  Q  R  R  *  N  T  Y  R  S  S  I  K  S  G  R  L  P  L  Q  N  C  *  W  K  I  Q  *  P  F  *  *  R  N  R  Q  S  I  F  F  L  W  Q  E  Y  D  A  S  S  S  E  *  *   : V  K  K  A  R  S  N  G  S  S  N  E  A  S  S  T  K  K  I  H  R  H  W  K  T  I  Q  Y  D  S  C  F  L  D  T  V  Y  G  S  *  L  D  R  S  F  G  R  Y  S  T   : G  *  A  K  G  T  K  R  S  C  *  *  M  P  T  Q  V  L  *  V  *  Q  I  Q  R  N  S  Y  R  F  L  *  N  Q  N  R  S  L  E  Q  P  Y  S  L  V  :  G  R  K  C  N  L  W  K  *  R  G  C  F  E  E  S  E  N  I  *  R  R  K  T  E  I  R  *  K  W  T  H  P  T  R  *  K  W  K  N  Y  L  W  *  C  S  *  H  L  G  W  T  F  N  A  S  S  S  L  C  S  R  A  Q  C  C  L  *  H  F  E   : E  R  I  S  R  I  R  G  *  R  V  V  S  S  C  K  A  S  H  F  S  C  N  C  K  S  S  H  H  R  L  D  C  S  A  S  E  N  R  Y  Y  A  C  R  N  A  C  Q  L  :  V  W  I  T  R  K  E  V  Q  G  Y  I  W  S  C  W  F  H  F  K  W  C  C  W  N  E  E  T  *  E  S  W  S  A  L  F  L  N  *  R  I  Y  E  C  L  *  N  A  S  T  V  T  *  Y  T  S  A  K  K  Y  R  C  H  A  W  A  K  Q  I  S  S  F  N  *  *  :  N  S  H  G  R  S  S  W  E  *  R  K  R  E  F  I  K  N  W  V  Y  *  A  N  G  F  N  G  A  S  S  *  W  S  S  *  A  L  E  L  S  S  V  D  E  R  S  Y  C  P  R  C  *  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  G  *  R  K  K  C  S  *  V  Q  *  L  *  K  R  N  A  S  N  S  Y  F  E  M  G  R  F  D  R  *  *  R  S  N  Q  N  T  W  *  S  I  *  *  *  Y  R  R  V  G  F  I  S  G  T  H  G  G  E  K  N  *  R  I  C  H  F  R  N  S  L  Q  H  I  P  S  H  G  Y  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  *  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  K  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  *  S  Y  S  T  L  F  S  C  S  S  V  V  D  L  K  I  M  C  V  T  I  Y  *  Y  R  N  T  Y  K  F  V  F  K  V  S  C  S  I  S  S  K  *  Y  I  V  S  W  S  V  K  I  T  I  S  *  *  F  V   </first_frame>
            <second_frame>  Y  K  *  Y  *  F  L  V  *  T  M  S  F  V  M  L  K  N  L  L  L  S  S  L  R  K  F  I  H  K  D  F  H  E  I  F  D  K  M  T  L  I  D  K  L  F  F  L  :  I  V  H  F  I  D  K  H  N  F  W  H  R  L  P  V  F  F  G  L  L  Y  L  G  A  R  R  S  L  H  Q  Q  Y  N  L  I  N  V  G  R  T  P  T  G  V  R  S  N  P  A  D  Y  P  Y  R  T  A  D  G  K  F  N  D  P  F  N  E  G  T  G  S  Q  F  S  F  F  G  R  N  M  M  P  L  H  Q  N  N  K  :  L  K  K  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  V  H  D  W  I  D  H  L  E  D  T  Q  Q  :  V  E  L  R  A  P  K  E  V  A  N  E  C  P  L  K  S  F  R  F  N  K  S  K  E  T  P  T  D  F  Y  E  I  K  T  G  H  L  N  S  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  E  D  V  L  K  K  V  R  T  F  R  D  G  K  L  K  L  G  E  N  G  L  I  Q  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  L  L  T  L  Q  A  L  F  V  Q  E  H  N  A  V  C  D  T  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  Q  L  L  K  T  D  T  M  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  S  I  L  S  G  V  V  G  M  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  Q  L  R  N  I  D  A  T  P  G  P  N  K  S  L  P  L  T  N  E :   I  P  M  E  E  V  V  G  S  K  G  K  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  V  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  P  R  Y  N  D  F  R  R  G  M  L  Q  I  P  I  S  K  W  E  D  L  T  D  D  E  E  A  I  K  T  L  G  E  V  Y  D  D  D  I  E  E  L  D  L  L  V  G  L  M  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  N  I  F  L  L  M  A  I  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  D  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  I  P  L  Y  F  R  V  P  Q  *  *  T  S  K  S  C  V  *  L  F  I  N  T  V  I  R  T  S  L  Y  L  R  C  L  V  L  F  H  Q  N  N  I  L  Y  L  G  L  *  K  *  L  L  V  S  N  S  Y  </second_frame>
            <third_frame>   T  S  D  I  N  F  S  Y  K  Q  C  L  L  L  C  S  R  I  S  C  Y  P  L  S  V  N  S  S  T  K  I  S  M  R  S  L  T  K  *  L  S  S  I  N  Y  F  F  * :   L  F  I  L  L  I  N  I  T  F  G  T  G  Y  R  Y  S  S  G  Y  F  I  L  E  H  G  G  V  F  T  S  N  I  I  *  S  T  S  V  E  H  L  P  E  F  D  Q  I  R  Q  I  T  L  T  E  L  L  M  E  N  S  M  T  L  L  M  K  E  Q  A  V  N  F  L  S  L  A  G  I  *  C  L  F  I  R  I  I  S :   *  K  S  Q  I  Q  W  *  *  Q  R  S  F  *  H  E  E  N  S  *  T  L  E  N  N  S  I  *  *  L  L  L  G  Y  S  L  W  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  Q  K  K  L  L  M  N  A  H  S  S  P  L  G  L  T  N  P  K  K  L  L  Q  I  F  M  K  S  K  P  V  T  *  T  A  V  L  P  G   : G  T  E  V  *  F  M  E  V  T  R  M  F  *  R  K  *  E  H  L  E  T  E  N  *  N  *  V  K  M  D  S  S  N  K  M  K  M  E  K  L  S  L  V  M  F  V  T  L  G  L  D  F  *  R  F  K  L  S  L  F  K  S  T  M  L  F  V  T  L  *  R :   K  N  I  Q  N  *  R  M  K  S  C  I  V  M  Q  G  *  S  L  Q  L  *  L  Q  K  F  T  P  *  I  G  L  F  S  F  *  K  P  I  L  C  L  Q  E  C  V  P  I   : G  M  D  Y  *  E  R  S  S  R  I  H  L  V  M  L  V  P  F  *  V  V  L  L  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  K  N  L  R  V  F  I  E  C  I  N  C  Y  L  I  H  F  S  *  E  I  *  M  P  R  L  G  Q  T  N  L  F  L  *  L  M   : K  F  P  W  K  K  *  L  G  V  K  E  K  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  G  I  K  L  V  E  L  L  S  F  G  I  I  Q  C  G  *  E  I  L  L  P  K  M  L  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  G  I  E  K  E  V  F  L  G  T  M  T  L  E  E  E  C  F  K  F  L  F  R  N  G  K  I  *  Q  M  M  K  K  Q  S  K  H  L  V  K  Y  M  M  M  I  *  K  S  W  I  Y  *  W  D  S  W  R  R  K  K  L  K  D  L  P  F  Q  K  Q  P  S  T  Y  S  F  S  W  L  *   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  M  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  I  I  L  F  H  S  I  F  V  F  L  S  S  R  P  Q  N  H  V  C  N  Y  L  L  I  P  *  Y  V  Q  V  C  I  *  G  V  L  F  Y  F  I  K  I  I  Y  C  I  L  V  C  E  N  N  Y  *  L  V  I  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20419" stop="20535"/>
                    <exon start="20679" stop="20942"/>
                    <exon start="21537" stop="21686"/>
                    <exon start="21945" stop="22078"/>
                    <exon start="22188" stop="22401"/>
                    <exon start="22564" stop="22709"/>
                    <exon start="22796" stop="23020"/>
                    <exon start="23109" stop="23311"/>
                    <exon start="23454" stop="23697"/>
                    <exon start="23778" stop="24003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSFVMLKNLLLSSLRKFIHKDFHEIFDKMTLIDKLFFLIVHFIDKHNFWHRLPVFFGLLYLGARRSLHQQYNLINVGRTPTGVRSNPADYPYRTADGKFNDPFNEGTGSQFSFFGRNMMPLHQNNKLKKPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMVHDWIDHLEDTQQVELRAPKEVANECPLKSFRFNKSKETPTDFYEIKTGHLNSRTPWWDGSVIYGSNEDVLKKVRTFRDGKLKLGENGLIQQDENGKIISGDVRNTWAGLLTLQALFVQEHNAVCDTLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVQLLKTDTMLAGMRANWYGLLGKKFKDTFGHVGSILSGVVGMKKPENHGVPYSLTEEFTSVYRMHQLLPDTLQLRNIDATPGPNKSLPLTNEIPMEEVVGSKGKENLSRIGFTKQMVSMGHQASGALELWNYPVWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVPRYNDFRRGMLQIPISKWEDLTDDEEAIKTLGEVYDDDIEELDLLVGLMAEKKIKGFAISETAFNIFLLMAIRRLEADRFFTSNYNDETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPIPLYFRVPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21534" e_stop="21686"/>
            <exon e_start="21945" e_stop="22078"/>
            <exon e_start="22188" e_stop="22401"/>
            <exon e_start="22564" e_stop="22709"/>
            <exon e_start="22796" e_stop="23020"/>
            <exon e_start="23109" e_stop="23311"/>
            <exon e_start="23454" e_stop="23697"/>
            <exon e_start="23778" e_stop="24145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="21534" e_stop="21686" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21687" i_stop="21944" i_length="258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21945" e_stop="22078" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="22079" i_stop="22187" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22188" e_stop="22401" e_length="214"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="22402" i_stop="22563" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22564" e_stop="22709" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22710" i_stop="22795" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22796" e_stop="23020" e_length="225"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="23021" i_stop="23108" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23109" e_stop="23311" e_length="203"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23312" i_stop="23453" i_length="142"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23454" e_stop="23697" e_length="244"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23698" i_stop="23777" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="23778" e_stop="24145" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21534" stop="21686"/>
              <exon start="21945" stop="22078"/>
              <exon start="22188" stop="22401"/>
              <exon start="22564" stop="22631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22052" stop="22078"/>
              <exon start="22188" stop="22401"/>
              <exon start="22564" stop="22709"/>
              <exon start="22796" stop="23020"/>
              <exon start="23109" stop="23230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22955" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="23997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22955" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="23929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22955" stop="23020"/>
              <exon start="23109" stop="23311"/>
              <exon start="23454" stop="23552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23148" stop="23311"/>
              <exon start="23454" stop="23697"/>
              <exon start="23778" stop="24069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23466" stop="23697"/>
              <exon start="23778" stop="24145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTAAAAAAGCCAGATCCAATGGTAGTAGCAACGAAGCTTCTAGCACGAAGAAAATTCATAGACACTGGAAAACAATTCAATATGATAGCTGCTTCTTGGATACAGTTTATGGTTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : GTTGAGCTAAGGGCACCAAAAGAAGTTGCTAATGAATGCCCACTCAAGTCCTTTAGGTTTAACAAATCCAAAGAAACTCCTACAGATTTTTATGAAATCAAAACCGGTCACTTGAACAGCCGTACTCCCTGGTG : GGACGGAAGTGTAATTTATGGAAGTAACGAGGATGTTTTGAAGAAAGTGAGAACATTTAGAGACGGAAAACTGAAATTAGGTGAAAATGGACTCATCCAACAAGATGAAAATGGAAAAATTATCTCTGGTGATGTTCGTAACACTTGGGCTGGACTTTTAACGCTTCAAGCTCTCTTTGTTCAAGAGCACAATGCTGTTTGTGACACTTTGAAG : AAAGAATATCCAGAATTAGAGGATGAAGAGTTGTATCGTCATGCAAGGCTAGTCACTTCAGCTGTAATTGCAAAAGTTCACACCATAGATTGGACTGTTCAGCTTCTGAAAACCGATACTATGCTTGCAGGAATGCGTGCCAATTG : GTATGGATTACTAGGAAAGAAGTTCAAGGATACATTTGGTCATGTTGGTTCCATTTTAAGTGGTGTTGTTGGAATGAAGAAACCTGAGAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTACGAGTGTTTATAGAATGCATCAACTGTTACCTGATACACTTCAGCTAAGAAATATAGATGCCACGCCTGGGCCAAACAAATCTCTTCCTTTAACTAATGA : AATTCCCATGGAAGAAGTAGTTGGGAGTAAAGGAAAAGAGAATTTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGGCATCAAGCTAGTGGAGCTCTTGAGCTTTGGAATTATCCAGTGTGGATGAGAGATCTTATTGCCCAAGATGTTGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGGGATAGAGAAAGAAGTGTTCCTAGGTACAATGACTTTAGAAGAGGAATGCTTCAAATTCCTATTTCGAAATGGGAAGATTTGACAGATGATGAAGAAGCAATCAAAACACTTGGTGAAGTATATGATGATGATATAGAAGAGTTGGATTTATTAGTGGGACTCATGGCGGAGAAAAAAATTAAAGGATTTGCCATTTCAGAAACAGCCTTCAACATATTCCTTCTCATGGCTATAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGATGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTAAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCATAATCCTATTCCACTCTATTTTCGTGTTCCTCAGTAGTAGACCTCAAAATCATGTGTGTAACTATTTATTAATACCGTAATACGTACAAGTTTGTATTTAAGGTGTCTTGTTCTATTTCATCAAAATAATATATTGTATCTTGGTCTGTGAAAATAACTATTAGTTAGTAATTCGTATT</gDNA_template>
            <first_frame> Q  L  K  K  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  V  H  D  W  I  D  H  L  E  D  T  Q  Q  :  V  E  L  R  A  P  K  E  V  A  N  E  C  P  L  K  S  F  R  F  N  K  S  K  E  T  P  T  D  F  Y  E  I  K  T  G  H  L  N  S  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  E  D  V  L  K  K  V  R  T  F  R  D  G  K  L  K  L  G  E  N  G  L  I  Q  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  L  L  T  L  Q  A  L  F  V  Q  E  H  N  A  V  C  D  T  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  Q  L  L  K  T  D  T  M  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  S  I  L  S  G  V  V  G  M  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  Q  L  R  N  I  D  A  T  P  G  P  N  K  S  L  P  L  T  N  E :   I  P  M  E  E  V  V  G  S  K  G  K  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  V  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  P  R  Y  N  D  F  R  R  G  M  L  Q  I  P  I  S  K  W  E  D  L  T  D  D  E  E  A  I  K  T  L  G  E  V  Y  D  D  D  I  E  E  L  D  L  L  V  G  L  M  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  N  I  F  L  L  M  A  I  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  D  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  I  P  L  Y  F  R  V  P  Q  *  *  T  S  K  S  C  V  *  L  F  I  N  T  V  I  R  T  S  L  Y  L  R  C  L  V  L  F  H  Q  N  N  I  L  Y  L  G  L  *  K  *  L  L  V  S  N  S  Y  </first_frame>
            <second_frame>  S  *  K  S  Q  I  Q  W  *  *  Q  R  S  F  *  H  E  E  N  S  *  T  L  E  N  N  S  I  *  *  L  L  L  G  Y  S  L  W  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  Q  K  K  L  L  M  N  A  H  S  S  P  L  G  L  T  N  P  K  K  L  L  Q  I  F  M  K  S  K  P  V  T  *  T  A  V  L  P  G   : G  T  E  V  *  F  M  E  V  T  R  M  F  *  R  K  *  E  H  L  E  T  E  N  *  N  *  V  K  M  D  S  S  N  K  M  K  M  E  K  L  S  L  V  M  F  V  T  L  G  L  D  F  *  R  F  K  L  S  L  F  K  S  T  M  L  F  V  T  L  *  R :   K  N  I  Q  N  *  R  M  K  S  C  I  V  M  Q  G  *  S  L  Q  L  *  L  Q  K  F  T  P  *  I  G  L  F  S  F  *  K  P  I  L  C  L  Q  E  C  V  P  I   : G  M  D  Y  *  E  R  S  S  R  I  H  L  V  M  L  V  P  F  *  V  V  L  L  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  K  N  L  R  V  F  I  E  C  I  N  C  Y  L  I  H  F  S  *  E  I  *  M  P  R  L  G  Q  T  N  L  F  L  *  L  M   : K  F  P  W  K  K  *  L  G  V  K  E  K  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  G  I  K  L  V  E  L  L  S  F  G  I  I  Q  C  G  *  E  I  L  L  P  K  M  L  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  G  I  E  K  E  V  F  L  G  T  M  T  L  E  E  E  C  F  K  F  L  F  R  N  G  K  I  *  Q  M  M  K  K  Q  S  K  H  L  V  K  Y  M  M  M  I  *  K  S  W  I  Y  *  W  D  S  W  R  R  K  K  L  K  D  L  P  F  Q  K  Q  P  S  T  Y  S  F  S  W  L  *   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  M  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  I  I  L  F  H  S  I  F  V  F  L  S  S  R  P  Q  N  H  V  C  N  Y  L  L  I  P  *  Y  V  Q  V  C  I  *  G  V  L  F  Y  F  I  K  I  I  Y  C  I  L  V  C  E  N  N  Y  *  L  V  I  R  I </second_frame>
            <third_frame>   V  K  K  A  R  S  N  G  S  S  N  E  A  S  S  T  K  K  I  H  R  H  W  K  T  I  Q  Y  D  S  C  F  L  D  T  V  Y  G  S  *  L  D  R  S  F  G  R  Y  S  T   : G  *  A  K  G  T  K  R  S  C  *  *  M  P  T  Q  V  L  *  V  *  Q  I  Q  R  N  S  Y  R  F  L  *  N  Q  N  R  S  L  E  Q  P  Y  S  L  V  :  G  R  K  C  N  L  W  K  *  R  G  C  F  E  E  S  E  N  I  *  R  R  K  T  E  I  R  *  K  W  T  H  P  T  R  *  K  W  K  N  Y  L  W  *  C  S  *  H  L  G  W  T  F  N  A  S  S  S  L  C  S  R  A  Q  C  C  L  *  H  F  E   : E  R  I  S  R  I  R  G  *  R  V  V  S  S  C  K  A  S  H  F  S  C  N  C  K  S  S  H  H  R  L  D  C  S  A  S  E  N  R  Y  Y  A  C  R  N  A  C  Q  L  :  V  W  I  T  R  K  E  V  Q  G  Y  I  W  S  C  W  F  H  F  K  W  C  C  W  N  E  E  T  *  E  S  W  S  A  L  F  L  N  *  R  I  Y  E  C  L  *  N  A  S  T  V  T  *  Y  T  S  A  K  K  Y  R  C  H  A  W  A  K  Q  I  S  S  F  N  *  *  :  N  S  H  G  R  S  S  W  E  *  R  K  R  E  F  I  K  N  W  V  Y  *  A  N  G  F  N  G  A  S  S  *  W  S  S  *  A  L  E  L  S  S  V  D  E  R  S  Y  C  P  R  C  *  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  G  *  R  K  K  C  S  *  V  Q  *  L  *  K  R  N  A  S  N  S  Y  F  E  M  G  R  F  D  R  *  *  R  S  N  Q  N  T  W  *  S  I  *  *  *  Y  R  R  V  G  F  I  S  G  T  H  G  G  E  K  N  *  R  I  C  H  F  R  N  S  L  Q  H  I  P  S  H  G  Y  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  *  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  K  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  *  S  Y  S  T  L  F  S  C  S  S  V  V  D  L  K  I  M  C  V  T  I  Y  *  Y  R  N  T  Y  K  F  V  F  K  V  S  C  S  I  S  S  K  *  Y  I  V  S  W  S  V  K  I  T  I  S  *  *  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21534" stop="21686"/>
                    <exon start="21945" stop="22078"/>
                    <exon start="22188" stop="22401"/>
                    <exon start="22564" stop="22709"/>
                    <exon start="22796" stop="23020"/>
                    <exon start="23109" stop="23311"/>
                    <exon start="23454" stop="23697"/>
                    <exon start="23778" stop="24003"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1542</number_coding_nucleotides>
                  <number_encoded_amino_acids>514</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLKKPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMVHDWIDHLEDTQQVELRAPKEVANECPLKSFRFNKSKETPTDFYEIKTGHLNSRTPWWDGSVIYGSNEDVLKKVRTFRDGKLKLGENGLIQQDENGKIISGDVRNTWAGLLTLQALFVQEHNAVCDTLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVQLLKTDTMLAGMRANWYGLLGKKFKDTFGHVGSILSGVVGMKKPENHGVPYSLTEEFTSVYRMHQLLPDTLQLRNIDATPGPNKSLPLTNEIPMEEVVGSKGKENLSRIGFTKQMVSMGHQASGALELWNYPVWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVPRYNDFRRGMLQIPISKWEDLTDDEEAIKTLGEVYDDDIEELDLLVGLMAEKKIKGFAISETAFNIFLLMAIRRLEADRFFTSNYNDETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPIPLYFRVPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="32828" PGL_stop="35786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32873" e_stop="32986"/>
            <exon e_start="33124" e_stop="33387"/>
            <exon e_start="33480" e_stop="33629"/>
            <exon e_start="33697" e_stop="33833"/>
            <exon e_start="33924" e_stop="34137"/>
            <exon e_start="34203" e_stop="34348"/>
            <exon e_start="34428" e_stop="34659"/>
            <exon e_start="34736" e_stop="34938"/>
            <exon e_start="35009" e_stop="35252"/>
            <exon e_start="35331" e_stop="35786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.932" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32873" e_stop="32986" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="32987" i_stop="33123" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33124" e_stop="33387" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33480" e_stop="33629" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33630" i_stop="33696" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33697" e_stop="33833" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.884" acc_prob="0.906">
            <gDNA_intron_boundary i_start="33834" i_stop="33923" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33924" e_stop="34137" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34203" e_stop="34348" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="34428" e_stop="34659" e_length="232"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="34736" e_stop="34938" e_length="203"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="34939" i_stop="35008" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35009" e_stop="35252" e_length="244"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="35331" e_stop="35786" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32873" stop="32986"/>
              <exon start="33124" stop="33387"/>
              <exon start="33480" stop="33629"/>
              <exon start="33697" stop="33833"/>
              <exon start="33924" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34938"/>
              <exon start="35009" stop="35252"/>
              <exon start="35331" stop="35559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33945" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33946" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34019" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34031" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34072" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35012" stop="35252"/>
              <exon start="35331" stop="35583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35127" stop="35252"/>
              <exon start="35331" stop="35786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35128" stop="35252"/>
              <exon start="35331" stop="35695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : ATAGTTCATATCATTGATAAACATAACTTGTGGCACCGGGTACCGGTGTTTTTAGGGCTAGTTTATCTTGCACTTCGTCGACATCTTAATCAGGAATATAATTTGATCAACGTGGGTAGAACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGGAGCTTAGGGCACCTGAAGAAGTTGCAAGTCAATGTCCTCTCAAGTCCTTTAAGTTTTACAAATCAAAAGAAACTCCTACCGGATTTTACGAAATTAAAACCGGTCATTTGAATAGGCGTACCCCTTGGTG : GGATGGAAGTGTTATTTATGGGAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG : GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGA : AATCCCAATGGGAGATTTAATCGGAGGCAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAA : TTTATAGAGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</gDNA_template>
            <first_frame> M  T  M  I  M  L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  I  V  H  I  I  D  K  H  N  L  W  H  R  V  P  V  F  L  G  L  V  Y  L  A  L  R  R  H  L  N  Q  E  Y  N  L  I  N  V  G  R  T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  E  L  R  A  P  E  E  V  A  S  Q  C  P  L  K  S  F  K  F  Y  K  S  K  E  T  P  T  G  F  Y  E  I  K  T  G  H  L  N  R  R  T  P  W  W :   D  G  S  V  I  Y  G  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  A  I  L  G  G  L  V  G  L  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  V  S  V  Y  R  M  H  Q  L  L  P  D  K  L  Q  V  K  K  Y  R  C  N  F  W  D  Q  N  K  S  I  P  F  D  *  R  :  N  P  N  G  R  F  N  R  R  Q  G  E  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  C  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  H  H  V  *  P  C  S  T  R  N :   L  *  R  Q  R  K  K  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  D  G  *  Y  G  S  Y  *  N  T  S  *  S  L  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  R  I  C  H  L  *  D  C  I  F  H  I  P  S  H  G  I  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  G  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  E  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  Q  S  C  S  T  L  L  S  C  S  *  T  L  N  *  *  Y  L  I  Y  L  L  I  E  N  E  I  *  R  I  V  W  Y  I  S  V  F  T  *  L  F  Q  F  V  K  L  M  M  C  I  Y  L  S  L  F  N  V  S  *  *  D  N  C  N  L  Y  I  L  C  I  M  F  L  C  Y  S  S  Y  L  T  S  K  N  F  F  F  Y  I  K </first_frame>
            <second_frame>  *  L  *  L  C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   *  F  I  S  L  I  N  I  T  C  G  T  G  Y  R  C  F  *  G  *  F  I  L  H  F  V  D  I  L  I  R  N  I  I  *  S  T  W  V  E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  R  S  L  G  H  L  K  K  L  Q  V  N  V  L  S  S  P  L  S  F  T  N  Q  K  K  L  L  P  D  F  T  K  L  K  P  V  I  *  I  G  V  P  L  G   : G  M  E  V  L  F  M  G  A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I   : G  M  D  C  *  G  R  N  L  K  I  H  L  G  T  L  E  V  Q  F  W  V  V  *  *  D  *  K  N  P  K  I  M  E  C  L  I  P  *  L  K  N  L  *  V  C  I  E  C  I  N  S  Y  L  I  N  F  R  L  R  N  I  D  A  T  S  G  T  K  I  N  L  S  L  L  T  N  E :   I  P  M  G  D  L  I  G  G  K  E  R  R  I  Y  Q  E  S  D  L  L  S  R  W  F  Q  W  G  I  K  H  V  E  L  L  S  F  G  I  I  Q  Y  G  *  G  I  L  L  L  K  M  L  M  E  Q  T  G  H  I  M  F  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  T  D  D  M  E  V  I  K  T  L  H  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  L  M  A  S  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  V  P  L  Y  F  R  V  P  K  H  *  T  N  N  T  *  F  I  Y  L  S  K  M  K  Y  E  E  L  C  G  I  F  P  F  L  R  N  C  F  S  L  L  N  *  *  C  V  S  I  Y  L  Y  L  M  F  L  D  K  I  I  V  I  F  I  F  Y  V  *  C  S  C  V  T  L  L  I  *  R  Q  K  T  F  F  F  I  S   </second_frame>
            <third_frame>   D  Y  D  Y  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : D  S  S  Y  H  *  *  T  *  L  V  A  P  G  T  G  V  F  R  A  S  L  S  C  T  S  S  T  S  *  S  G  I  *  F  D  Q  R  G  *  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  G  A  *  G  T  *  R  S  C  K  S  M  S  S  Q  V  L  *  V  L  Q  I  K  R  N  S  Y  R  I  L  R  N  *  N  R  S  F  E  *  A  Y  P  L  V  :  G  W  K  C  Y  L  W  E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  :  V  W  I  A  R  E  E  I  *  R  Y  I  W  A  R  W  R  C  N  F  G  W  F  S  R  T  K  K  T  R  K  S  W  S  A  L  F  L  N  *  R  I  C  E  C  V  S  N  A  S  T  L  T  *  *  T  S  G  *  E  I  *  M  Q  L  L  G  P  K  *  I  Y  P  F  *  L  T   : K  S  Q  W  E  I  *  S  E  A  R  R  G  E  F  I  K  N  R  I  Y  *  A  D  G  F  N  G  A  S  S  M  W  S  S  *  A  L  E  L  S  N  M  D  E  G  S  Y  C  S  R  C  *  W  N  R  Q  A  T  S  C  L  T  L  Q  H  S  K  :  F  I  E  T  E  K  E  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  R  M  I  W  K  L  L  K  H  F  M  K  F  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  K  D  L  P  S  L  R  L  H  F  S  Y  S  F  S  W  H  Q   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  R  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  T  I  L  F  H  S  T  F  V  F  L  N  I  K  L  I  I  P  N  L  F  T  Y  R  K  *  N  M  K  N  C  V  V  Y  F  R  F  Y  V  I  V  S  V  C  *  I  N  D  V  Y  L  S  I  F  I  *  C  F  L  I  R  *  L  *  S  L  Y  F  M  Y  N  V  L  V  L  L  F  L  F  N  V  K  K  L  F  F  L  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32873" stop="32986"/>
                    <exon start="33124" stop="33387"/>
                    <exon start="33480" stop="33629"/>
                    <exon start="33697" stop="33833"/>
                    <exon start="33924" stop="34137"/>
                    <exon start="34203" stop="34348"/>
                    <exon start="34428" stop="34656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTMIMLKNLLFSPLRGFIHKDFHQILDKMNLRDKLSFLIVHIIDKHNLWHRVPVFLGLVYLALRRHLNQEYNLINVGRTPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIEELRAPEEVASQCPLKSFKFYKSKETPTGFYEIKTGHLNRRTPWWDGSVIYGSNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWYGLLGKKFKDTFGHVGGAILGGLVGLKKPENHGVPYSLTEEFVSVYRMHQLLPDKLQVKKYRCNFWDQNKSIPFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34869" stop="34938"/>
                    <exon start="35009" stop="35252"/>
                    <exon start="35331" stop="35559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILLLKMLMEQTGHIMFDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLTDDMEVIKTLHEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPVPLYFRVPKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33945" e_stop="34137"/>
            <exon e_start="34203" e_stop="34348"/>
            <exon e_start="34428" e_stop="34659"/>
            <exon e_start="34736" e_stop="34938"/>
            <exon e_start="35016" e_stop="35252"/>
            <exon e_start="35331" e_stop="35786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.014" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33945" e_stop="34137" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34138" i_stop="34202" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34203" e_stop="34348" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34349" i_stop="34427" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="34428" e_stop="34659" e_length="232"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34660" i_stop="34735" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="34736" e_stop="34938" e_length="203"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.014">
            <gDNA_intron_boundary i_start="34939" i_stop="35015" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35016" e_stop="35252" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35253" i_stop="35330" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="35331" e_stop="35786" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33945" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33946" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34019" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34031" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34071" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34659"/>
              <exon start="34736" stop="34938"/>
              <exon start="35016" stop="35150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34072" stop="34137"/>
              <exon start="34203" stop="34348"/>
              <exon start="34428" stop="34638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34804" stop="34938"/>
              <exon start="35016" stop="35252"/>
              <exon start="35331" stop="35709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35127" stop="35252"/>
              <exon start="35331" stop="35786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35128" stop="35252"/>
              <exon start="35331" stop="35695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAACGTAGAGATCTTGAAGAAAGTAAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGACTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATACTTGGGCTGGATTTGTAACACTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGATGTCTTGAAG : AAAGAATATCCAGAATTGGAAGATGAAGAGTTGTATCGTCATGCAAGACTGGTGACTTCTGCTGTTATTGCAAAAGTTCACACAATAGATTGGACTGTCGAGCTTCTTAAAACAGACACCTTATTTGCAGCAATGCGAACCAATTG : GTATGGATTGCTAGGGAAGAAATTTAAAGATACATTTGGGCACGTTGGAGGTGCAATTTTGGGTGGTTTAGTAGGACTAAAAAAACCCGAAAATCATGGAGTGCCTTATTCCTTAACTGAAGAATTTGTGAGTGTGTATCGAATGCATCAACTCTTACCTGATAAACTTCAGGTTAAGAAATATAGATGCAACTTCTGGGACCAAAATAAATCTATCCCTTTTGACTAACGA : AATCCCAATGGGAGATTTAATCGGAGGCAAGGAGAGGAGAATTTATCAAGAATCGGATTTACTAAGCAGATGGTTTCAATGGGGCATCAAGCATGTGGAGCTCTTGAGCTTTGGAATTATCCAATATGGATGAGGGATCTTATTGCTCAAGATGTTGATGGAACAGACAGGCCACATCATGTTTGACCTTGCAGCACTCGAAA : AGACAGAGAAAGAAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGACGGATGATATGGAAGTTATTAAAACACTTCATGAAGTTTATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAAGGATTTGCCATCTCTGAGACTGCATTTTTCATATTCCTTCTCATGGCATCAAG : GAGGTTAGAGGCAGATAGATTTTTCACAAGCAATTACAACGAGGAGACATACACAAAGAAAGGATTAGAATGGGTGAATACTACTGAGAGTTTGAAAGATGTGTTAGATCGTCATTATCCAGAAATGACTGATAAATGGATGAATTCAAACAGTGCCTTCTCTGTTTGGGATTCTTCTCCACAACCTCACAATCCTGTTCCACTCTACTTTCGTGTTCCTAAACATTAAACTAATAATACCTAATTTATTTACTTATCGAAAATGAAATATGAAGAATTGTGTGGTATATTTCCGTTTTTACGTAATTGTTTCAGTTTGTTAAATTAATGATGTGTATCTATCTATCTTTATTTAATGTTTCTTGATAAGATAATTGTAATCTTTATATTTTATGTATAATGTTCTTGTGTTACTCTTCTTATTTAACGTCAAAAAACTTTTTTTTTTATATCAAA</gDNA_template>
            <first_frame> E  Q  R  R  D  L  E  E  S  K  D  I  *  R  R  K  I  E  T  I  R  K  W  T  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  Y  L  G  W  I  C  N  T  A  S  A  L  C  T  R  A  *  S  C  L  *  C  L  E   : E  R  I  S  R  I  G  R  *  R  V  V  S  S  C  K  T  G  D  F  C  C  Y  C  K  S  S  H  N  R  L  D  C  R  A  S  *  N  R  H  L  I  C  S  N  A  N  Q  L  :  V  W  I  A  R  E  E  I  *  R  Y  I  W  A  R  W  R  C  N  F  G  W  F  S  R  T  K  K  T  R  K  S  W  S  A  L  F  L  N  *  R  I  C  E  C  V  S  N  A  S  T  L  T  *  *  T  S  G  *  E  I  *  M  Q  L  L  G  P  K  *  I  Y  P  F  *  L  T   : K  S  Q  W  E  I  *  S  E  A  R  R  G  E  F  I  K  N  R  I  Y  *  A  D  G  F  N  G  A  S  S  M  W  S  S  *  A  L  E  L  S  N  M  D  E  G  S  Y  C  S  R  C  *  W  N  R  Q  A  T  S  C  L  T  L  Q  H  S  K  :  R  Q  R  K  K  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  D  G  *  Y  G  S  Y  *  N  T  S  *  S  L  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  R  I  C  H  L  *  D  C  I  F  H  I  P  S  H  G  I  K  :  E  V  R  G  R  *  I  F  H  K  Q  L  Q  R  G  D  I  H  K  E  R  I  R  M  G  E  Y  Y  *  E  F  E  R  C  V  R  S  S  L  S  R  N  D  *  *  M  D  E  F  K  Q  C  L  L  C  L  G  F  F  S  T  T  S  Q  S  C  S  T  L  L  S  C  S  *  T  L  N  *  *  Y  L  I  Y  L  L  I  E  N  E  I  *  R  I  V  W  Y  I  S  V  F  T  *  L  F  Q  F  V  K  L  M  M  C  I  Y  L  S  L  F  N  V  S  *  *  D  N  C  N  L  Y  I  L  C  I  M  F  L  C  Y  S  S  Y  L  T  S  K  N  F  F  F  Y  I  K </first_frame>
            <second_frame>  S  N  V  E  I  L  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  T  W  A  G  F  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  V  L  K  :  K  E  Y  P  E  L  E  D  E  E  L  Y  R  H  A  R  L  V  T  S  A  V  I  A  K  V  H  T  I  D  W  T  V  E  L  L  K  T  D  T  L  F  A  A  M  R  T  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  A  I  L  G  G  L  V  G  L  K  K  P  E  N  H  G  V  P  Y  S  L  T  E  E  F  V  S  V  Y  R  M  H  Q  L  L  P  D  K  L  Q  V  K  K  Y  R  C  N  F  W  D  Q  N  K  S  I  P  F  D  *  R  :  N  P  N  G  R  F  N  R  R  Q  G  E  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  C  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  H  H  V  *  P  C  S  T  R  K :   D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  T  D  D  M  E  V  I  K  T  L  H  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  L  M  A  S  R :   R  L  E  A  D  R  F  F  T  S  N  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  D  K  W  M  N  S  N  S  A  F  S  V  W  D  S  S  P  Q  P  H  N  P  V  P  L  Y  F  R  V  P  K  H  *  T  N  N  T  *  F  I  Y  L  S  K  M  K  Y  E  E  L  C  G  I  F  P  F  L  R  N  C  F  S  L  L  N  *  *  C  V  S  I  Y  L  Y  L  M  F  L  D  K  I  I  V  I  F  I  F  Y  V  *  C  S  C  V  T  L  L  I  *  R  Q  K  T  F  F  F  I  S   </second_frame>
            <third_frame>   A  T  *  R  S  *  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  D  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  I  L  G  L  D  L  *  H  C  K  R  S  L  Y  K  S  I  I  L  F  V  M  S  *  R :   K  N  I  Q  N  W  K  M  K  S  C  I  V  M  Q  D  W  *  L  L  L  L  L  Q  K  F  T  Q  *  I  G  L  S  S  F  L  K  Q  T  P  Y  L  Q  Q  C  E  P  I   : G  M  D  C  *  G  R  N  L  K  I  H  L  G  T  L  E  V  Q  F  W  V  V  *  *  D  *  K  N  P  K  I  M  E  C  L  I  P  *  L  K  N  L  *  V  C  I  E  C  I  N  S  Y  L  I  N  F  R  L  R  N  I  D  A  T  S  G  T  K  I  N  L  S  L  L  T  N  E :   I  P  M  G  D  L  I  G  G  K  E  R  R  I  Y  Q  E  S  D  L  L  S  R  W  F  Q  W  G  I  K  H  V  E  L  L  S  F  G  I  I  Q  Y  G  *  G  I  L  L  L  K  M  L  M  E  Q  T  G  H  I  M  F  D  L  A  A  L  E   : K  T  E  K  E  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  R  M  I  W  K  L  L  K  H  F  M  K  F  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  K  D  L  P  S  L  R  L  H  F  S  Y  S  F  S  W  H  Q   : G  G  *  R  Q  I  D  F  S  Q  A  I  T  T  R  R  H  T  Q  R  K  D  *  N  G  *  I  L  L  R  V  *  K  M  C  *  I  V  I  I  Q  K  *  L  I  N  G  *  I  Q  T  V  P  S  L  F  G  I  L  L  H  N  L  T  I  L  F  H  S  T  F  V  F  L  N  I  K  L  I  I  P  N  L  F  T  Y  R  K  *  N  M  K  N  C  V  V  Y  F  R  F  Y  V  I  V  S  V  C  *  I  N  D  V  Y  L  S  I  F  I  *  C  F  L  I  R  *  L  *  S  L  Y  F  M  Y  N  V  L  V  L  L  F  L  F  N  V  K  K  L  F  F  L  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33946" stop="34137"/>
                    <exon start="34203" stop="34348"/>
                    <exon start="34428" stop="34656"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNVEILKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNTWAGFVTLQALFVQEHNLVCDVLKKEYPELEDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLFAAMRTNWYGLLGKKFKDTFGHVGGAILGGLVGLKKPENHGVPYSLTEEFVSVYRMHQLLPDKLQVKKYRCNFWDQNKSIPFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34922" stop="34938"/>
                    <exon start="35016" stop="35252"/>
                    <exon start="35331" stop="35559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCSTRKDRERSVARYNEFRRRMLQIPITKWEDLTDDMEVIKTLHEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTDKWMNSNSAFSVWDSSPQPHNPVPLYFRVPKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32828" e_stop="32986"/>
            <exon e_start="33243" e_stop="33387"/>
            <exon e_start="33480" e_stop="33636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32828" e_stop="32986" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32987" i_stop="33242" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33243" e_stop="33387" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33388" i_stop="33479" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33480" e_stop="33636" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32828" stop="32986"/>
              <exon start="33243" stop="33387"/>
              <exon start="33480" stop="33616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32832" stop="32986"/>
              <exon start="33243" stop="33387"/>
              <exon start="33480" stop="33636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATTTTAATTACTATCATATATATATATATAAAGTAGGAAACATGACTATGATTATGCTGAAGAATCTCTTGTTCTCCCCTCTTCGTGGTTTCATCCACAAAGATTTTCATCAGATACTTGACAAAATGAATCTCCGCGACAAACTTTCATTTCTG : AACACCGAGCGGAGTCCGATCGAATCCGGGCGACTTCCCTTATAGAACAGCAGATGGAAAATATAATGATCCTTTCAATGAAGGAGCAGGAAGTGAATTTTCTTTCTTTGGGAGGAATATGATGCCTGTTGAGCAACATGACAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAGCTGCTAGCACGGAGAGAATTCATAGACACTGGAAAACAATTTAACATGATAGCTGCATCATGGATACAGTTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAGGTATAAT</gDNA_template>
            <first_frame> I  H  F  N  Y  Y  H  I  Y  I  Y  K  V  G  N  M  T  M  I  M  L  K  N  L  L  F  S  P  L  R  G  F  I  H  K  D  F  H  Q  I  L  D  K  M  N  L  R  D  K  L  S  F  L  :  N  T  E  R  S  P  I  E  S  G  R  L  P  L  *  N  S  R  W  K  I  *  *  S  F  Q  *  R  S  R  K  *  I  F  F  L  W  E  E  Y  D  A  C  *  A  T  *  Q   : V  K  E  S  R  S  N  G  S  G  N  K  A  A  S  T  E  R  I  H  R  H  W  K  T  I  *  H  D  S  C  I  M  D  T  V  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T  G  I   </first_frame>
            <second_frame>  Y  I  L  I  T  I  I  Y  I  Y  I  K  *  E  T  *  L  *  L  C  *  R  I  S  C  S  P  L  F  V  V  S  S  T  K  I  F  I  R  Y  L  T  K  *  I  S  A  T  N  F  H  F  * :   T  P  S  G  V  R  S  N  P  G  D  F  P  Y  R  T  A  D  G  K  Y  N  D  P  F  N  E  G  A  G  S  E  F  S  F  F  G  R  N  M  M  P  V  E  Q  H  D  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  E  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  V  *  </second_frame>
            <third_frame>   T  F  *  L  L  S  Y  I  Y  I  *  S  R  K  H  D  Y  D  Y  A  E  E  S  L  V  L  P  S  S  W  F  H  P  Q  R  F  S  S  D  T  *  Q  N  E  S  P  R  Q  T  F  I  S   : E  H  R  A  E  S  D  R  I  R  A  T  S  L  I  E  Q  Q  M  E  N  I  M  I  L  S  M  K  E  Q  E  V  N  F  L  S  L  G  G  I  *  C  L  L  S  N  M  T  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  S  C  *  H  G  E  N  S  *  T  L  E  N  N  L  T  *  *  L  H  H  G  Y  S  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R  Y  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33244" stop="33387"/>
                    <exon start="33480" stop="33635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSGVRSNPGDFPYRTADGKYNDPFNEGAGSEFSFFGRNMMPVEQHDKLKNPDPMVVATKLLARREFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39388" PGL_stop="44297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39388" e_stop="39438"/>
            <exon e_start="40590" e_stop="40835"/>
            <exon e_start="43090" e_stop="43239"/>
            <exon e_start="43340" e_stop="43473"/>
            <exon e_start="43539" e_stop="43752"/>
            <exon e_start="43833" e_stop="43978"/>
            <exon e_start="44070" e_stop="44297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.209" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.890"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39388" e_stop="39438" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.209" acc_prob="0.962">
            <gDNA_intron_boundary i_start="39439" i_stop="40589" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40590" e_stop="40835" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43090" e_stop="43239" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43340" e_stop="43473" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="43539" e_stop="43752" e_length="214"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43753" i_stop="43832" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.890">
            <gDNA_exon_boundary e_start="43833" e_stop="43978" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43979" i_stop="44069" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="44070" e_stop="44297" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39388" stop="39438"/>
              <exon start="40590" stop="40835"/>
              <exon start="43090" stop="43239"/>
              <exon start="43340" stop="43473"/>
              <exon start="43539" stop="43735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43578" stop="43752"/>
              <exon start="43833" stop="43978"/>
              <exon start="44070" stop="44297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATTATAATGTTTGGGCAATCCTCCTCCTTTTGAGCTAACTTTTGGGTT : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAGCAGATCTGAAGTTTCAAAGAAAGTGAGGACATTTAAAGACGGAAAATTGAAACTATCAGAAAATGGGCTCCTTGAACAAGATGAAAATGGAAAAATTATATCTGGTGATGTTCGCAATGCTTGGGCTGGACTTGTAACTCTGCAAGCGCTCTTTGTACAAGAGCATAATCTTGTTTGTGACACCTTGAAG : AAAGAATATCCAGAATTGAAAGATGAGGAGTTGTATCGTCATGCAAAACGTGTCACTGCTGCTGTAATTGCTAAAATTCACACCATAGATTGGACAGTTGAACTTCTCAATACAGACACCCTTCTAGCAGGAATGCGCGCCAATTG : GTATGGATTGTTAGGAAAGAAATTCAAGGATACATTTGGTCATGTTGGAGGTTCCATTTTAAGTGGTTTTGTGGGAATGAAGAAACCTGAGGATCATGGAGTGCCTTATTCCTTAACTGAGGAATTTACGAGTGTCTATCGAATGCATCAACTCCTGCCTGATACACTTGAGCTAAGAAATATCGATGCCACGCCTGGACTAAACAAATCTCTTCCTTTGACTAATGA</gDNA_template>
            <first_frame> L  I  I  M  F  G  Q  S  S  S  F  *  A  N  F  W  V  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G  S  R  S  E  V  S  K  K  V  R  T  F  K  D  G  K  L  K  L  S  E  N  G  L  L  E  Q  D  E  N  G  K  I  I  S  G  D  V  R  N  A  W  A  G  L  V  T  L  Q  A  L  F  V  Q  E  H  N  L  V  C  D  T  L  K  :  K  E  Y  P  E  L  K  D  E  E  L  Y  R  H  A  K  R  V  T  A  A  V  I  A  K  I  H  T  I  D  W  T  V  E  L  L  N  T  D  T  L  L  A  G  M  R  A  N  W :   Y  G  L  L  G  K  K  F  K  D  T  F  G  H  V  G  G  S  I  L  S  G  F  V  G  M  K  K  P  E  D  H  G  V  P  Y  S  L  T  E  E  F  T  S  V  Y  R  M  H  Q  L  L  P  D  T  L  E  L  R  N  I  D  A  T  P  G  L  N  K  S  L  P  L  T  N   </first_frame>
            <second_frame>  S  L  *  C  L  G  N  P  P  P  F  E  L  T  F  G  L :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  A  D  L  K  F  Q  R  K  *  G  H  L  K  T  E  N  *  N  Y  Q  K  M  G  S  L  N  K  M  K  M  E  K  L  Y  L  V  M  F  A  M  L  G  L  D  L  *  L  C  K  R  S  L  Y  K  S  I  I  L  F  V  T  P  *  R :   K  N  I  Q  N  *  K  M  R  S  C  I  V  M  Q  N  V  S  L  L  L  *  L  L  K  F  T  P  *  I  G  Q  L  N  F  S  I  Q  T  P  F  *  Q  E  C  A  P  I   : G  M  D  C  *  E  R  N  S  R  I  H  L  V  M  L  E  V  P  F  *  V  V  L  W  E  *  R  N  L  R  I  M  E  C  L  I  P  *  L  R  N  L  R  V  S  I  E  C  I  N  S  C  L  I  H  L  S  *  E  I  S  M  P  R  L  D  *  T  N  L  F  L  *  L  M  </second_frame>
            <third_frame>   H  Y  N  V  W  A  I  L  L  L  L  S  *  L  L  G   : Y  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E  Q  I  *  S  F  K  E  S  E  D  I  *  R  R  K  I  E  T  I  R  K  W  A  P  *  T  R  *  K  W  K  N  Y  I  W  *  C  S  Q  C  L  G  W  T  C  N  S  A  S  A  L  C  T  R  A  *  S  C  L  *  H  L  E   : E  R  I  S  R  I  E  R  *  G  V  V  S  S  C  K  T  C  H  C  C  C  N  C  *  N  S  H  H  R  L  D  S  *  T  S  Q  Y  R  H  P  S  S  R  N  A  R  Q  L  :  V  W  I  V  R  K  E  I  Q  G  Y  I  W  S  C  W  R  F  H  F  K  W  F  C  G  N  E  E  T  *  G  S  W  S  A  L  F  L  N  *  G  I  Y  E  C  L  S  N  A  S  T  P  A  *  Y  T  *  A  K  K  Y  R  C  H  A  W  T  K  Q  I  S  S  F  D  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39424" stop="39438"/>
                    <exon start="40590" stop="40835"/>
                    <exon start="43090" stop="43239"/>
                    <exon start="43340" stop="43473"/>
                    <exon start="43539" stop="43752"/>
                    <exon start="43833" stop="43978"/>
                    <exon start="44070" stop="44295"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANFWVMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYGSRSEVSKKVRTFKDGKLKLSENGLLEQDENGKIISGDVRNAWAGLVTLQALFVQEHNLVCDTLKKEYPELKDEELYRHAKRVTAAVIAKIHTIDWTVELLNTDTLLAGMRANWYGLLGKKFKDTFGHVGGSILSGFVGMKKPEDHGVPYSLTEEFTSVYRMHQLLPDTLELRNIDATPGLNKSLPLTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39660" e_stop="39816"/>
            <exon e_start="40590" e_stop="40835"/>
            <exon e_start="43090" e_stop="43239"/>
            <exon e_start="43340" e_stop="43473"/>
            <exon e_start="43539" e_stop="43562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.962" e_score="0.860"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.907"/>
          <exon-intron don_prob="0.970" acc_prob="0.990" e_score="0.980"/>
          <exon-intron don_prob="0.987" acc_prob="0.923" e_score="0.955"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.860">
            <gDNA_exon_boundary e_start="39660" e_stop="39816" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.962">
            <gDNA_intron_boundary i_start="39817" i_stop="40589" i_length="773"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="40590" e_stop="40835" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40836" i_stop="43089" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="43090" e_stop="43239" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.990">
            <gDNA_intron_boundary i_start="43240" i_stop="43339" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="43340" e_stop="43473" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43474" i_stop="43538" i_length="65"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="43539" e_stop="43562" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39660" stop="39816"/>
              <exon start="40590" stop="40835"/>
              <exon start="43090" stop="43239"/>
              <exon start="43340" stop="43473"/>
              <exon start="43539" stop="43562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAACCAACCCCATATATATTTCTAGCTTGTAGAAAATTAAACTAACAACATGTCTTTTGTTAATCTTTTTCTATTTCCTCTTCGTTGTTTCATTCACAAAGATTTTCATGATGTTGTTGATAGAATGAGTCTTCTCAACAAACTTTTGTTTATG : ATGGTTCACTTGATTGATAAATTGAACCTGTGGCACCGGCTACCAGTGTTCTTGGGGCTACTTTATCTCGCAGCACGGCGACATCTTCATCAGCAATATAATTTGATCAACGTCGATAGAACATTTACTATCGATGTTACATCAAATCGGGTCGTCGAAAAATACAACGACCCCTTTAATGAAGGATGTGGCAGTGAATTACCTTTCTTTGGTAGGAATATGATGCCTGTTGTTCAACATGAAAAG : TTAAAGAATCCAGATCCAATGGTAGTGGCAACAAAATTGCTAGCACGCAGAAAATTCATCGATACTGGAAAACAATTCAACATGATAGCTGCCTCTTGGATACAATTTATGATTCATGATTGGATCGATCATTTGGAAGATACTCAACAG : ATTGAGCTAAGGGCACCTGAAGAAGTTGCAAGTGAGTGTCCTCTCAAGTCCTTGAAGTTTTTCAAGACCAAGCAAACACCTACGGGTTTATGTGATATCAAGACGGGTCACTTGAACATACGTACTCCACAGTG : GGATGGAAGTGCTATTTATGGGAG</gDNA_template>
            <first_frame> L  E  P  T  P  Y  I  F  L  A  C  R  K  L  N  *  Q  H  V  F  C  *  S  F  S  I  S  S  S  L  F  H  S  Q  R  F  S  *  C  C  *  *  N  E  S  S  Q  Q  T  F  V  Y   : D  G  S  L  D  *  *  I  E  P  V  A  P  A  T  S  V  L  G  A  T  L  S  R  S  T  A  T  S  S  S  A  I  *  F  D  Q  R  R  *  N  I  Y  Y  R  C  Y  I  K  S  G  R  R  K  I  Q  R  P  L  *  *  R  M  W  Q  *  I  T  F  L  W  *  E  Y  D  A  C  C  S  T  *  K   : V  K  E  S  R  S  N  G  S  G  N  K  I  A  S  T  Q  K  I  H  R  Y  W  K  T  I  Q  H  D  S  C  L  L  D  T  I  Y  D  S  *  L  D  R  S  F  G  R  Y  S  T   : D  *  A  K  G  T  *  R  S  C  K  *  V  S  S  Q  V  L  E  V  F  Q  D  Q  A  N  T  Y  G  F  M  *  Y  Q  D  G  S  L  E  H  T  Y  S  T  V  :  G  W  K  C  Y  L  W  E </first_frame>
            <second_frame>  *  N  Q  P  H  I  Y  F  *  L  V  E  N  *  T  N  N  M  S  F  V  N  L  F  L  F  P  L  R  C  F  I  H  K  D  F  H  D  V  V  D  R  M  S  L  L  N  K  L  L  F  M  :  M  V  H  L  I  D  K  L  N  L  W  H  R  L  P  V  F  L  G  L  L  Y  L  A  A  R  R  H  L  H  Q  Q  Y  N  L  I  N  V  D  R  T  F  T  I  D  V  T  S  N  R  V  V  E  K  Y  N  D  P  F  N  E  G  C  G  S  E  L  P  F  F  G  R  N  M  M  P  V  V  Q  H  E  K  :  L  K  N  P  D  P  M  V  V  A  T  K  L  L  A  R  R  K  F  I  D  T  G  K  Q  F  N  M  I  A  A  S  W  I  Q  F  M  I  H  D  W  I  D  H  L  E  D  T  Q  Q  :  I  E  L  R  A  P  E  E  V  A  S  E  C  P  L  K  S  L  K  F  F  K  T  K  Q  T  P  T  G  L  C  D  I  K  T  G  H  L  N  I  R  T  P  Q  W :   D  G  S  A  I  Y  G   </second_frame>
            <third_frame>   R  T  N  P  I  Y  I  S  S  L  *  K  I  K  L  T  T  C  L  L  L  I  F  F  Y  F  L  F  V  V  S  F  T  K  I  F  M  M  L  L  I  E  *  V  F  S  T  N  F  C  L  * :   W  F  T  *  L  I  N  *  T  C  G  T  G  Y  Q  C  S  W  G  Y  F  I  S  Q  H  G  D  I  F  I  S  N  I  I  *  S  T  S  I  E  H  L  L  S  M  L  H  Q  I  G  S  S  K  N  T  T  T  P  L  M  K  D  V  A  V  N  Y  L  S  L  V  G  I  *  C  L  L  F  N  M  K  S :   *  R  I  Q  I  Q  W  *  W  Q  Q  N  C  *  H  A  E  N  S  S  I  L  E  N  N  S  T  *  *  L  P  L  G  Y  N  L  *  F  M  I  G  S  I  I  W  K  I  L  N  R :   L  S  *  G  H  L  K  K  L  Q  V  S  V  L  S  S  P  *  S  F  S  R  P  S  K  H  L  R  V  Y  V  I  S  R  R  V  T  *  T  Y  V  L  H  S   : G  M  E  V  L  F  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39703" stop="39816"/>
                    <exon start="40590" stop="40835"/>
                    <exon start="43090" stop="43239"/>
                    <exon start="43340" stop="43473"/>
                    <exon start="43539" stop="43560"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMSFVNLFLFPLRCFIHKDFHDVVDRMSLLNKLLFMMVHLIDKLNLWHRLPVFLGLLYLAARRHLHQQYNLINVDRTFTIDVTSNRVVEKYNDPFNEGCGSELPFFGRNMMPVVQHEKLKNPDPMVVATKLLARRKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTQQIELRAPEEVASECPLKSLKFFKTKQTPTGLCDIKTGHLNIRTPQWDGSAIYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="44382" PGL_stop="45373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44382" e_stop="44578"/>
            <exon e_start="44667" e_stop="44910"/>
            <exon e_start="45014" e_stop="45373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="0.988"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="44382" e_stop="44578" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44579" i_stop="44666" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="44667" e_stop="44910" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44911" i_stop="45013" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="45014" e_stop="45373" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44382" stop="44578"/>
              <exon start="44667" stop="44910"/>
              <exon start="45014" stop="45373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGAAGATCTAATTGGGGGTAAAGGAAATGAGAATCTATCAAGAATTGGGTTTACTAAGCAAATGGTTTCAATGGGACATCAAGCTAGTGGAGCTCTTGAACTTTGGAATTATCCGATATGGATGAGGGATCTTATTGCCCAAGACGTCGATGGAACAGACAGGCCAGATCCTATTGACCTTGCAGCTCTTGAAA : TTTATAGAGACAGAGAAAGGAGTGTTGCTAGGTACAATGAATTTCGAAGGAGAATGTTGCAAATTCCCATCACTAAATGGGAAGATTTGAGTGATGATATGGAAGTTATTAAAACACTTAATGAAGTATATGGTGATGATGTAGAACAATTGGATCTGTTAGTTGGAATGTCCGCGGAGAAAAAAATTAAGGGGTTTGCTATCTCTGAGACTGCTTTTTTCATATTTCTAATCATGGCATCAAG : AAGGTTAGAGGCAGATAAATTTTTCACGAGCTATTACAATGAGGAGACATATACGAAAAAAGGACTTGAATGGGTGAATACAACTGAAAGCTTAAAAGATGTACTAGATCGACATTATCCAGAGATGACTGAGAAATGGATGAACTCCAACAGCGCCTTTTCTGTTTGGAACTCGCCTCCAGAACCACACAATCCAATTCCAGTCTACTTTCGCGTTCCTCGGACATAGGCTCAAAATCAAAATAAAAAGAAGTAATACGTGTGTTGATTAGTTTTTACCTGCAAATGTGTAATAAGATTCCATGTACTATCCTCACTACCTGTTTCATTCAGTGAGCCGTTTTATGAAACTATTTCAGA</gDNA_template>
            <first_frame> D  G  R  S  N  W  G  *  R  K  *  E  S  I  K  N  W  V  Y  *  A  N  G  F  N  G  T  S  S  *  W  S  S  *  T  L  E  L  S  D  M  D  E  G  S  Y  C  P  R  R  R  W  N  R  Q  A  R  S  Y  *  P  C  S  S  *  N :   L  *  R  Q  R  K  E  C  C  *  V  Q  *  I  S  K  E  N  V  A  N  S  H  H  *  M  G  R  F  E  *  *  Y  G  S  Y  *  N  T  *  *  S  I  W  *  *  C  R  T  I  G  S  V  S  W  N  V  R  G  E  K  N  *  G  V  C  Y  L  *  D  C  F  F  H  I  S  N  H  G  I  K  :  K  V  R  G  R  *  I  F  H  E  L  L  Q  *  G  D  I  Y  E  K  R  T  *  M  G  E  Y  N  *  K  L  K  R  C  T  R  S  T  L  S  R  D  D  *  E  M  D  E  L  Q  Q  R  L  F  C  L  E  L  A  S  R  T  T  Q  S  N  S  S  L  L  S  R  S  S  D  I  G  S  K  S  K  *  K  E  V  I  R  V  L  I  S  F  Y  L  Q  M  C  N  K  I  P  C  T  I  L  T  T  C  F  I  Q  *  A  V  L  *  N  Y  F  R </first_frame>
            <second_frame>  M  E  D  L  I  G  G  K  G  N  E  N  L  S  R  I  G  F  T  K  Q  M  V  S  M  G  H  Q  A  S  G  A  L  E  L  W  N  Y  P  I  W  M  R  D  L  I  A  Q  D  V  D  G  T  D  R  P  D  P  I  D  L  A  A  L  E   : I  Y  R  D  R  E  R  S  V  A  R  Y  N  E  F  R  R  R  M  L  Q  I  P  I  T  K  W  E  D  L  S  D  D  M  E  V  I  K  T  L  N  E  V  Y  G  D  D  V  E  Q  L  D  L  L  V  G  M  S  A  E  K  K  I  K  G  F  A  I  S  E  T  A  F  F  I  F  L  I  M  A  S  R :   R  L  E  A  D  K  F  F  T  S  Y  Y  N  E  E  T  Y  T  K  K  G  L  E  W  V  N  T  T  E  S  L  K  D  V  L  D  R  H  Y  P  E  M  T  E  K  W  M  N  S  N  S  A  F  S  V  W  N  S  P  P  E  P  H  N  P  I  P  V  Y  F  R  V  P  R  T  *  A  Q  N  Q  N  K  K  K  *  Y  V  C  *  L  V  F  T  C  K  C  V  I  R  F  H  V  L  S  S  L  P  V  S  F  S  E  P  F  Y  E  T  I  S   </second_frame>
            <third_frame>   W  K  I  *  L  G  V  K  E  M  R  I  Y  Q  E  L  G  L  L  S  K  W  F  Q  W  D  I  K  L  V  E  L  L  N  F  G  I  I  R  Y  G  *  G  I  L  L  P  K  T  S  M  E  Q  T  G  Q  I  L  L  T  L  Q  L  L  K  :  F  I  E  T  E  K  G  V  L  L  G  T  M  N  F  E  G  E  C  C  K  F  P  S  L  N  G  K  I  *  V  M  I  W  K  L  L  K  H  L  M  K  Y  M  V  M  M  *  N  N  W  I  C  *  L  E  C  P  R  R  K  K  L  R  G  L  L  S  L  R  L  L  F  S  Y  F  *  S  W  H  Q   : E  G  *  R  Q  I  N  F  S  R  A  I  T  M  R  R  H  I  R  K  K  D  L  N  G  *  I  Q  L  K  A  *  K  M  Y  *  I  D  I  I  Q  R  *  L  R  N  G  *  T  P  T  A  P  F  L  F  G  T  R  L  Q  N  H  T  I  Q  F  Q  S  T  F  A  F  L  G  H  R  L  K  I  K  I  K  R  S  N  T  C  V  D  *  F  L  P  A  N  V  *  *  D  S  M  Y  Y  P  H  Y  L  F  H  S  V  S  R  F  M  K  L  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44383" stop="44578"/>
                    <exon start="44667" stop="44910"/>
                    <exon start="45014" stop="45242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEDLIGGKGNENLSRIGFTKQMVSMGHQASGALELWNYPIWMRDLIAQDVDGTDRPDPIDLAALEIYRDRERSVARYNEFRRRMLQIPITKWEDLSDDMEVIKTLNEVYGDDVEQLDLLVGMSAEKKIKGFAISETAFFIFLIMASRRLEADKFFTSYYNEETYTKKGLEWVNTTESLKDVLDRHYPEMTEKWMNSNSAFSVWNSPPEPHNPIPVYFRVPRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="48083" PGL_stop="47492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48083" e_stop="47768"/>
            <exon e_start="47678" e_stop="47492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.693" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="48083" e_stop="47768" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="47767" i_stop="47679" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47678" e_stop="47492" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48083" stop="47768"/>
              <exon start="47678" stop="47492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCATCACCTACTCTAGAAAAATTAACCCATTCTTCACTTAAAGTAGAACAAGCACCACATTTCTCTCTGTTTCTCTCTTCTCCTTGTGTTAATGTATATCAAATGAAGATGAATTTTCACAATTATAATCTATTTAAAGAGGATAAGTTTCGTAGCCCAGGTTTCTTATTGATCTATTCACTCTTTCTAACCGTGATTTTCAGCTGCTACATGCTTCATTTTTCCTTCAGCCCAAACGTTAACTTCATAACCAAACAAGATTCAGCTCCTCCTACTAAATCCTCACACGTTACAAATCACTCTCAACCTGCAG : TTCACAACAACATTACATCCGATTGTGACTTGTTGAATGGTAATTGGGTTTTAGAGGAGAAGGGTAATTATTCTCTGTATTATACAAACTTTAGCTGTCCAACAATTCCGCATTCAAAAAACTGTTTGTTGAACGGAAGGGCAGATGAAGGATTTATGCAGTGGAGATGGAAACCAGAAGAATGTAC</gDNA_template>
            <first_frame> *  P  S  P  T  L  E  K  L  T  H  S  S  L  K  V  E  Q  A  P  H  F  S  L  F  L  S  S  P  C  V  N  V  Y  Q  M  K  M  N  F  H  N  Y  N  L  F  K  E  D  K  F  R  S  P  G  F  L  L  I  Y  S  L  F  L  T  V  I  F  S  C  Y  M  L  H  F  S  F  S  P  N  V  N  F  I  T  K  Q  D  S  A  P  P  T  K  S  S  H  V  T  N  H  S  Q  P  A   : V  H  N  N  I  T  S  D  C  D  L  L  N  G  N  W  V  L  E  E  K  G  N  Y  S  L  Y  Y  T  N  F  S  C  P  T  I  P  H  S  K  N  C  L  L  N  G  R  A  D  E  G  F  M  Q  W  R  W  K  P  E  E  C   </first_frame>
            <second_frame>  N  H  H  L  L  *  K  N  *  P  I  L  H  L  K  *  N  K  H  H  I  S  L  C  F  S  L  L  L  V  L  M  Y  I  K  *  R  *  I  F  T  I  I  I  Y  L  K  R  I  S  F  V  A  Q  V  S  Y  *  S  I  H  S  F  *  P  *  F  S  A  A  T  C  F  I  F  P  S  A  Q  T  L  T  S  *  P  N  K  I  Q  L  L  L  L  N  P  H  T  L  Q  I  T  L  N  L  Q  :  F  T  T  T  L  H  P  I  V  T  C  *  M  V  I  G  F  *  R  R  R  V  I  I  L  C  I  I  Q  T  L  A  V  Q  Q  F  R  I  Q  K  T  V  C  *  T  E  G  Q  M  K  D  L  C  S  G  D  G  N  Q  K  N  V  </second_frame>
            <third_frame>   T  I  T  Y  S  R  K  I  N  P  F  F  T  *  S  R  T  S  T  T  F  L  S  V  S  L  F  S  L  C  *  C  I  S  N  E  D  E  F  S  Q  L  *  S  I  *  R  G  *  V  S  *  P  R  F  L  I  D  L  F  T  L  S  N  R  D  F  Q  L  L  H  A  S  F  F  L  Q  P  K  R  *  L  H  N  Q  T  R  F  S  S  S  Y  *  I  L  T  R  Y  K  S  L  S  T  C  S :   S  Q  Q  H  Y  I  R  L  *  L  V  E  W  *  L  G  F  R  G  E  G  *  L  F  S  V  L  Y  K  L  *  L  S  N  N  S  A  F  K  K  L  F  V  E  R  K  G  R  *  R  I  Y  A  V  E  M  E  T  R  R  M  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48080" stop="47768"/>
                    <exon start="47678" stop="47494"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPTLEKLTHSSLKVEQAPHFSLFLSSPCVNVYQMKMNFHNYNLFKEDKFRSPGFLLIYSLFLTVIFSCYMLHFSFSPNVNFITKQDSAPPTKSSHVTNHSQPAVHNNITSDCDLLNGNWVLEEKGNYSLYYTNFSCPTIPHSKNCLLNGRADEGFMQWRWKPEEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="49932" PGL_stop="54242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49949" e_stop="50023"/>
            <exon e_start="50260" e_stop="50410"/>
            <exon e_start="50704" e_stop="50862"/>
            <exon e_start="52647" e_stop="52706"/>
            <exon e_start="53057" e_stop="53155"/>
            <exon e_start="53991" e_stop="54098"/>
            <exon e_start="54179" e_stop="54242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49949" e_stop="50023" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50260" e_stop="50410" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50862" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52647" e_stop="52706" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53057" e_stop="53155" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53991" e_stop="54098" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54099" i_stop="54178" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54179" e_stop="54242" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49949" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49954" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49955" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54098"/>
              <exon start="54179" stop="54230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49957" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50011" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50013" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54098"/>
              <exon start="54179" stop="54242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50013" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50302" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54098"/>
              <exon start="54179" stop="54194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</gDNA_template>
            <first_frame> K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R   </first_frame>
            <second_frame>  K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  </second_frame>
            <third_frame>   R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49968" stop="50023"/>
                    <exon start="50260" stop="50410"/>
                    <exon start="50704" stop="50862"/>
                    <exon start="52647" stop="52706"/>
                    <exon start="53057" stop="53155"/>
                    <exon start="53991" stop="54098"/>
                    <exon start="54179" stop="54241"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49932" e_stop="50023"/>
            <exon e_start="50260" e_stop="50410"/>
            <exon e_start="50704" e_stop="50862"/>
            <exon e_start="52647" e_stop="52706"/>
            <exon e_start="53057" e_stop="53155"/>
            <exon e_start="54006" e_stop="54077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49932" e_stop="50023" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50024" i_stop="50259" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50260" e_stop="50410" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50862" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52647" e_stop="52706" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53057" e_stop="53155" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="53156" i_stop="54005" i_length="850"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="54006" e_stop="54077" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49932" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="54006" stop="54037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49949" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49955" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="54006" stop="54077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49957" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50011" stop="50023"/>
              <exon start="50260" stop="50410"/>
              <exon start="50704" stop="50822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTG</gDNA_template>
            <first_frame> R  D  Q  L  L  T  K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L </first_frame>
            <second_frame>  E  I  S  Y  *  Q  R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C   </second_frame>
            <third_frame>   R  S  A  T  D  K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49968" stop="50023"/>
                    <exon start="50260" stop="50410"/>
                    <exon start="50704" stop="50862"/>
                    <exon start="52647" stop="52706"/>
                    <exon start="53057" stop="53155"/>
                    <exon start="54006" stop="54077"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50121" e_stop="50410"/>
            <exon e_start="50704" e_stop="50862"/>
            <exon e_start="52647" e_stop="52706"/>
            <exon e_start="53057" e_stop="53155"/>
            <exon e_start="53991" e_stop="54098"/>
            <exon e_start="54179" e_stop="54194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50121" e_stop="50410" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50862" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52647" e_stop="52706" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53057" e_stop="53155" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53156" i_stop="53990" i_length="835"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53991" e_stop="54098" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54099" i_stop="54178" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54179" e_stop="54194" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50121" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50130" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50302" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="53991" stop="54098"/>
              <exon start="54179" stop="54194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTG</gDNA_template>
            <first_frame> E  N  A  L  N  H  I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V </first_frame>
            <second_frame>  K  M  P  *  I  I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A   </second_frame>
            <third_frame>   K  C  P  K  S  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50255" stop="50410"/>
                    <exon start="50704" stop="50862"/>
                    <exon start="52647" stop="52706"/>
                    <exon start="53057" stop="53155"/>
                    <exon start="53991" stop="54098"/>
                    <exon start="54179" stop="54193"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="50121" e_stop="50410"/>
            <exon e_start="50704" e_stop="50862"/>
            <exon e_start="52647" e_stop="52706"/>
            <exon e_start="53057" e_stop="53155"/>
            <exon e_start="54006" e_stop="54085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50121" e_stop="50410" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50411" i_stop="50703" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50862" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50863" i_stop="52646" i_length="1784"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52647" e_stop="52706" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52707" i_stop="53056" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53057" e_stop="53155" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="53156" i_stop="54005" i_length="850"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="54006" e_stop="54085" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50121" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53155"/>
              <exon start="54006" stop="54085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50121" stop="50410"/>
              <exon start="50704" stop="50862"/>
              <exon start="52647" stop="52706"/>
              <exon start="53057" stop="53086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGC</gDNA_template>
            <first_frame> E  N  A  L  N  H  I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  </first_frame>
            <second_frame>  K  M  P  *  I  I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C </second_frame>
            <third_frame>   K  C  P  K  S  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50255" stop="50410"/>
                    <exon start="50704" stop="50862"/>
                    <exon start="52647" stop="52706"/>
                    <exon start="53057" stop="53155"/>
                    <exon start="54006" stop="54083"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVLRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68583" PGL_stop="71851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68583" e_stop="68812"/>
            <exon e_start="69355" e_stop="69390"/>
            <exon e_start="70010" e_stop="70211"/>
            <exon e_start="71224" e_stop="71302"/>
            <exon e_start="71393" e_stop="71628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68583" e_stop="68812" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69355" e_stop="69390" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="70211" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71224" e_stop="71302" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71393" e_stop="71628" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68583" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68584" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68596" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68611" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAATGTAAGTTTAGACTTAAGAGCTGTAAGGAAGTTGCTAAAGAAAAAATCTGATATTGTAGATGCTCAATGAATTGAAAAAATAAATAAAATGTTACTACCATTAGTTTCAGCGTTGATGT</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M  *  V  *  T  *  E  L  *  G  S  C  *  R  K  N  L  I  L  *  M  L  N  E  L  K  K  *  I  K  C  Y  Y  H  *  F  Q  R  *  C </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K  C  K  F  R  L  K  S  C  K  E  V  A  K  E  K  I  *  Y  C  R  C  S  M  N  *  K  N  K  *  N  V  T  T  I  S  F  S  V  D   </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  V  S  L  D  L  R  A  V  R  K  L  L  K  K  K  S  D  I  V  D  A  Q  *  I  E  K  I  N  K  M  L  L  P  L  V  S  A  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68583" stop="68812"/>
                    <exon start="69355" stop="69390"/>
                    <exon start="70010" stop="70211"/>
                    <exon start="71224" stop="71302"/>
                    <exon start="71393" stop="71514"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68583" e_stop="68812"/>
            <exon e_start="69355" e_stop="69390"/>
            <exon e_start="70010" e_stop="70211"/>
            <exon e_start="71224" e_stop="71302"/>
            <exon e_start="71393" e_stop="71510"/>
            <exon e_start="71661" e_stop="71851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.865" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68583" e_stop="68812" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69355" e_stop="69390" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70010" e_stop="70211" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70212" i_stop="71223" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71224" e_stop="71302" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.952">
            <gDNA_intron_boundary i_start="71303" i_stop="71392" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="71393" e_stop="71510" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.944" acc_prob="0.865">
            <gDNA_intron_boundary i_start="71511" i_stop="71660" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71661" e_stop="71851" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68583" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68584" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70211"/>
              <exon start="71224" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70148" stop="70211"/>
              <exon start="71224" stop="71302"/>
              <exon start="71393" stop="71510"/>
              <exon start="71661" stop="71851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAATACCAGACAGTACTCTGCAAACACTCCTACATTTGTACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAG : TTGAAAGTGGTTGCTGGAGATCCAAAGGAAACTAGCTTTGCTCAAACTGCTTTATTTACAAAACACCCTGAGATGGAAG : GTTGGCCCAAGAGTCACGATTTCCAGATATACAAATTAGAGATTGAAGAGATATTTATGATCAATTGGTTTGGTGGTCCCAAACCTCTCACCGTGGATCAGTATTTGCAGGCTAAAAT : GGATAGTCACATGACCATTGCATGAACGCCTTTATGTATACAATCTGCTGACAAGTTCTTTTCAAGTGAAGGTTGAAAGTGGTTTTGGAATGTGAAAAAAGGGTATCAATTTTAGTGATCAATGAAATTCAACTGTAAATAGGAGATACTTGTGAAGCTCATTATCATTCATTCACTTGTGCATTTGACAT</gDNA_template>
            <first_frame> N  K  Y  Q  T  V  L  C  K  H  S  Y  I  C  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  :  L  K  V  V  A  G  D  P  K  E  T  S  F  A  Q  T  A  L  F  T  K  H  P  E  M  E   : G  W  P  K  S  H  D  F  Q  I  Y  K  L  E  I  E  E  I  F  M  I  N  W  F  G  G  P  K  P  L  T  V  D  Q  Y  L  Q  A  K  M :   D  S  H  M  T  I  A  *  T  P  L  C  I  Q  S  A  D  K  F  F  S  S  E  G  *  K  W  F  W  N  V  K  K  G  Y  Q  F  *  *  S  M  K  F  N  C  K  *  E  I  L  V  K  L  I  I  I  H  S  L  V  H  L  T  </first_frame>
            <second_frame>  I  N  T  R  Q  Y  S  A  N  T  P  T  F  V  Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  S :   *  K  W  L  L  E  I  Q  R  K  L  A  L  L  K  L  L  Y  L  Q  N  T  L  R  W  K  :  V  G  P  R  V  T  I  S  R  Y  T  N  *  R  L  K  R  Y  L  *  S  I  G  L  V  V  P  N  L  S  P  W  I  S  I  C  R  L  K   : W  I  V  T  *  P  L  H  E  R  L  Y  V  Y  N  L  L  T  S  S  F  Q  V  K  V  E  S  G  F  G  M  *  K  K  G  I  N  F  S  D  Q  *  N  S  T  V  N  R  R  Y  L  *  S  S  L  S  F  I  H  L  C  I  *  H </second_frame>
            <third_frame>   *  I  P  D  S  T  L  Q  T  L  L  H  L  Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K   : V  E  S  G  C  W  R  S  K  G  N  *  L  C  S  N  C  F  I  Y  K  T  P  *  D  G  R :   L  A  Q  E  S  R  F  P  D  I  Q  I  R  D  *  R  D  I  Y  D  Q  L  V  W  W  S  Q  T  S  H  R  G  S  V  F  A  G  *  N  :  G  *  S  H  D  H  C  M  N  A  F  M  Y  T  I  C  *  Q  V  L  F  K  *  R  L  K  V  V  L  E  C  E  K  R  V  S  I  L  V  I  N  E  I  Q  L  *  I  G  D  T  C  E  A  H  Y  H  S  F  T  C  A  F  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68583" stop="68812"/>
                    <exon start="69355" stop="69390"/>
                    <exon start="70010" stop="70211"/>
                    <exon start="71224" stop="71302"/>
                    <exon start="71393" stop="71510"/>
                    <exon start="71661" stop="71685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKYQTVLCKHSYICTVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKLKVVAGDPKETSFAQTALFTKHPEMEGWPKSHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKMDSHMTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68624" e_stop="68812"/>
            <exon e_start="69355" e_stop="69390"/>
            <exon e_start="70010" e_stop="70325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68624" e_stop="68812" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68813" i_stop="69354" i_length="542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69355" e_stop="69390" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69391" i_stop="70009" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="70010" e_stop="70325" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68624" stop="68812"/>
              <exon start="69355" stop="69390"/>
              <exon start="70010" stop="70325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGTAAACATCATGAATATCATCAACAGGGCAGCTTCGATTTTTCTTCTTTTGGTGTTCTTCTTGGCTTTTTTCAAAGATTCTGTTCATGGGCGCCCTCTTTTACTGTCAATGTCCAGACCCAAGCCGGATGATGCTGCCTTATTTGCTCGATGGCTCGTTTCTCAGAATTATTGGGGTGTCCTCAA : TACTATAGCAAGTGATATGGGAGGAGCACCGTTCGG : GAATGTTGTCTCATTTAGTGATGGGTTACCGGACAAAGGCCGTGGTATACCATACTTCTACTTAACAACGCTTGATCCCACTGCTAGAAATGCATTGAAAGACCAGAGATCATCATTTACAATCAGTGAGTACGCCATTGGAACTTGCGGCAAGAAAGATCCTGAGAACCCATCTTGTGCCAAAATTACCCTCGTAGGAAAGGTGGTTGCACTAACAACTCTTCTCCTTTATACAAGAGATTTTATTTAATTTGATGCAGGTGTCTTTTAAACAAGAGTTTTTTGTATCATGCCGAATATTCTGTATCCCACTCTT</gDNA_template>
            <first_frame> Y  S  K  H  H  E  Y  H  Q  Q  G  S  F  D  F  S  S  F  G  V  L  L  G  F  F  Q  R  F  C  S  W  A  P  S  F  T  V  N  V  Q  T  Q  A  G  *  C  C  L  I  C  S  M  A  R  F  S  E  L  L  G  C  P  Q  :  Y  Y  S  K  *  Y  G  R  S  T  V  R  :  E  C  C  L  I  *  *  W  V  T  G  Q  R  P  W  Y  T  I  L  L  L  N  N  A  *  S  H  C  *  K  C  I  E  R  P  E  I  I  I  Y  N  Q  *  V  R  H  W  N  L  R  Q  E  R  S  *  E  P  I  L  C  Q  N  Y  P  R  R  K  G  G  C  T  N  N  S  S  P  L  Y  K  R  F  Y  L  I  *  C  R  C  L  L  N  K  S  F  L  Y  H  A  E  Y  S  V  S  H  S  </first_frame>
            <second_frame>  T  V  N  I  M  N  I  I  N  R  A  A  S  I  F  L  L  L  V  F  F  L  A  F  F  K  D  S  V  H  G  R  P  L  L  L  S  M  S  R  P  K  P  D  D  A  A  L  F  A  R  W  L  V  S  Q  N  Y  W  G  V  L  N :   T  I  A  S  D  M  G  G  A  P  F  G :   N  V  V  S  F  S  D  G  L  P  D  K  G  R  G  I  P  Y  F  Y  L  T  T  L  D  P  T  A  R  N  A  L  K  D  Q  R  S  S  F  T  I  S  E  Y  A  I  G  T  C  G  K  K  D  P  E  N  P  S  C  A  K  I  T  L  V  G  K  V  V  A  L  T  T  L  L  L  Y  T  R  D  F  I  *  F  D  A  G  V  F  *  T  R  V  F  C  I  M  P  N  I  L  Y  P  T  L </second_frame>
            <third_frame>   Q  *  T  S  *  I  S  S  T  G  Q  L  R  F  F  F  F  W  C  S  S  W  L  F  S  K  I  L  F  M  G  A  L  F  Y  C  Q  C  P  D  P  S  R  M  M  L  P  Y  L  L  D  G  S  F  L  R  I  I  G  V  S  S   : I  L  *  Q  V  I  W  E  E  H  R  S   : G  M  L  S  H  L  V  M  G  Y  R  T  K  A  V  V  Y  H  T  S  T  *  Q  R  L  I  P  L  L  E  M  H  *  K  T  R  D  H  H  L  Q  S  V  S  T  P  L  E  L  A  A  R  K  I  L  R  T  H  L  V  P  K  L  P  S  *  E  R  W  L  H  *  Q  L  F  S  F  I  Q  E  I  L  F  N  L  M  Q  V  S  F  K  Q  E  F  F  V  S  C  R  I  F  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68625" stop="68812"/>
                    <exon start="69355" stop="69390"/>
                    <exon start="70010" stop="70259"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVNIMNIINRAASIFLLLVFFLAFFKDSVHGRPLLLSMSRPKPDDAALFARWLVSQNYWGVLNTIASDMGGAPFGNVVSFSDGLPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGTCGKKDPENPSCAKITLVGKVVALTTLLLYTRDFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="72912" PGL_stop="74287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72912" e_stop="73641"/>
            <exon e_start="74114" e_stop="74287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.218" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72912" e_stop="73641" e_length="730"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.218">
            <gDNA_intron_boundary i_start="73642" i_stop="74113" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74114" e_stop="74287" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72912" stop="73641"/>
              <exon start="74114" stop="74170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72948" stop="73641"/>
              <exon start="74114" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATCTTCCTCAACACCAATGTTGCTTCCTTTCTGCAACTTCCATCCCATAAACCCTTCTAAAACCCTCTTAAAACCCTCACCATCACATTCCCTCTTCTCTAGTACACCCTCTCTTTCTCCAAAACCCTTCTTTCCTCGTGATTCCCTTCCTGTTTTCGCCGCATCCCCTGATACTGAAGCTTTACCGGAATCCGCCATCCGAAGAATCGCCGACAAGCTACGCAGTCTTGGATTTGTTGAACAACCCAAGAATCAAGAAACCCAAGAAAATGCTTTGAGTTCTAATCCCACTGCAAACTCACCCGGTCAAATTTTCGTTCCTTTGCCTACCCAATTACCCAAGTACCGCGTGGGTCACACGCTTGACACCAGTTGGAGTACGCCTGAAAACCCAGTACCGCAGCCTGGTTTAGGGAAATCTATACAGAAGTTTCATGAATTGAGGGATGAGTTCTTGAAGGAGAAGGACAAGGAGAGGTTGAAGAATAAGGAGTATAAGAAAGAGAGAGCGCCTAGTTTGGCGGAGCTTACTTTGCCAGCTGAGGAATTGAGGAGGCTGAGGACAGTTGGGATTGCGCTCAGGAAAAAGTTAAAGATTGGAAAGGCTGGGATTACTGAGGGGATTGTGAATGGTATTCATGAAAGATGGAGGCGTATCGAGCTTGTTAAAATTACGTGCGAGGACATATGTAGGTTGAATATGAAGAGGACTCATGAGTTGTTAGAG : AAGAAAACTGGAGGTCTTGTTATATGGAGATCTGGAAGTAATATAATTTTGTATAGAGGAGCTGATTACAAGTATCCTTATTTCTCTGAGAATAGCTTCGAGAATAACAGTGCACAAGATGCTAACCCTGACTTGTTCATGGGTGCGGAAGAGCACATGACTAACTCATCTGGC</gDNA_template>
            <first_frame> I  I  F  L  N  T  N  V  A  S  F  L  Q  L  P  S  H  K  P  F  *  N  P  L  K  T  L  T  I  T  F  P  L  L  *  Y  T  L  S  F  S  K  T  L  L  S  S  *  F  P  S  C  F  R  R  I  P  *  Y  *  S  F  T  G  I  R  H  P  K  N  R  R  Q  A  T  Q  S  W  I  C  *  T  T  Q  E  S  R  N  P  R  K  C  F  E  F  *  S  H  C  K  L  T  R  S  N  F  R  S  F  A  Y  P  I  T  Q  V  P  R  G  S  H  A  *  H  Q  L  E  Y  A  *  K  P  S  T  A  A  W  F  R  E  I  Y  T  E  V  S  *  I  E  G  *  V  L  E  G  E  G  Q  G  E  V  E  E  *  G  V  *  E  R  E  S  A  *  F  G  G  A  Y  F  A  S  *  G  I  E  E  A  E  D  S  W  D  C  A  Q  E  K  V  K  D  W  K  G  W  D  Y  *  G  D  C  E  W  Y  S  *  K  M  E  A  Y  R  A  C  *  N  Y  V  R  G  H  M  *  V  E  Y  E  E  D  S  *  V  V  R   : E  E  N  W  R  S  C  Y  M  E  I  W  K  *  Y  N  F  V  *  R  S  *  L  Q  V  S  L  F  L  *  E  *  L  R  E  *  Q  C  T  R  C  *  P  *  L  V  H  G  C  G  R  A  H  D  *  L  I  W  </first_frame>
            <second_frame>  S  S  S  S  T  P  M  L  L  P  F  C  N  F  H  P  I  N  P  S  K  T  L  L  K  P  S  P  S  H  S  L  F  S  S  T  P  S  L  S  P  K  P  F  F  P  R  D  S  L  P  V  F  A  A  S  P  D  T  E  A  L  P  E  S  A  I  R  R  I  A  D  K  L  R  S  L  G  F  V  E  Q  P  K  N  Q  E  T  Q  E  N  A  L  S  S  N  P  T  A  N  S  P  G  Q  I  F  V  P  L  P  T  Q  L  P  K  Y  R  V  G  H  T  L  D  T  S  W  S  T  P  E  N  P  V  P  Q  P  G  L  G  K  S  I  Q  K  F  H  E  L  R  D  E  F  L  K  E  K  D  K  E  R  L  K  N  K  E  Y  K  K  E  R  A  P  S  L  A  E  L  T  L  P  A  E  E  L  R  R  L  R  T  V  G  I  A  L  R  K  K  L  K  I  G  K  A  G  I  T  E  G  I  V  N  G  I  H  E  R  W  R  R  I  E  L  V  K  I  T  C  E  D  I  C  R  L  N  M  K  R  T  H  E  L  L  E  :  K  K  T  G  G  L  V  I  W  R  S  G  S  N  I  I  L  Y  R  G  A  D  Y  K  Y  P  Y  F  S  E  N  S  F  E  N  N  S  A  Q  D  A  N  P  D  L  F  M  G  A  E  E  H  M  T  N  S  S  G </second_frame>
            <third_frame>   H  L  P  Q  H  Q  C  C  F  L  S  A  T  S  I  P  *  T  L  L  K  P  S  *  N  P  H  H  H  I  P  S  S  L  V  H  P  L  F  L  Q  N  P  S  F  L  V  I  P  F  L  F  S  P  H  P  L  I  L  K  L  Y  R  N  P  P  S  E  E  S  P  T  S  Y  A  V  L  D  L  L  N  N  P  R  I  K  K  P  K  K  M  L  *  V  L  I  P  L  Q  T  H  P  V  K  F  S  F  L  C  L  P  N  Y  P  S  T  A  W  V  T  R  L  T  P  V  G  V  R  L  K  T  Q  Y  R  S  L  V  *  G  N  L  Y  R  S  F  M  N  *  G  M  S  S  *  R  R  R  T  R  R  G  *  R  I  R  S  I  R  K  R  E  R  L  V  W  R  S  L  L  C  Q  L  R  N  *  G  G  *  G  Q  L  G  L  R  S  G  K  S  *  R  L  E  R  L  G  L  L  R  G  L  *  M  V  F  M  K  D  G  G  V  S  S  L  L  K  L  R  A  R  T  Y  V  G  *  I  *  R  G  L  M  S  C  *  R :   R  K  L  E  V  L  L  Y  G  D  L  E  V  I  *  F  C  I  E  E  L  I  T  S  I  L  I  S  L  R  I  A  S  R  I  T  V  H  K  M  L  T  L  T  C  S  W  V  R  K  S  T  *  L  T  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72913" stop="73641"/>
                    <exon start="74114" stop="74287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSTPMLLPFCNFHPINPSKTLLKPSPSHSLFSSTPSLSPKPFFPRDSLPVFAASPDTEALPESAIRRIADKLRSLGFVEQPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENPVPQPGLGKSIQKFHELRDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIWRSGSNIILYRGADYKYPYFSENSFENNSAQDANPDLFMGAEEHMTNSSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="75647" PGL_stop="80174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75647" e_stop="75878"/>
            <exon e_start="77117" e_stop="77176"/>
            <exon e_start="77279" e_stop="77404"/>
            <exon e_start="78139" e_stop="78408"/>
            <exon e_start="78506" e_stop="78737"/>
            <exon e_start="79154" e_stop="79284"/>
            <exon e_start="79372" e_stop="80174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.071" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75647" e_stop="75878" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="75879" i_stop="77116" i_length="1238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77117" e_stop="77176" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="77177" i_stop="77278" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77279" e_stop="77404" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.983">
            <gDNA_intron_boundary i_start="77405" i_stop="78138" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78139" e_stop="78408" e_length="270"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.071">
            <gDNA_intron_boundary i_start="78409" i_stop="78505" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78506" e_stop="78737" e_length="232"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.910">
            <gDNA_intron_boundary i_start="78738" i_stop="79153" i_length="416"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79154" e_stop="79284" e_length="131"/>
          </exon>
          <intron i_serial="6" don_prob="0.722" acc_prob="0.578">
            <gDNA_intron_boundary i_start="79285" i_stop="79371" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="79372" e_stop="80174" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75647" stop="75878"/>
              <exon start="77117" stop="77176"/>
              <exon start="77279" stop="77404"/>
              <exon start="78139" stop="78408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75715" stop="75878"/>
              <exon start="77117" stop="77176"/>
              <exon start="77279" stop="77404"/>
              <exon start="78139" stop="78408"/>
              <exon start="78506" stop="78563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75792" stop="75878"/>
              <exon start="77117" stop="77176"/>
              <exon start="77279" stop="77404"/>
              <exon start="78139" stop="78400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78162" stop="78408"/>
              <exon start="78506" stop="78683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78311" stop="78408"/>
              <exon start="78506" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78319" stop="78408"/>
              <exon start="78506" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78320" stop="78408"/>
              <exon start="78506" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78320" stop="78408"/>
              <exon start="78506" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78636" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78642" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78644" stop="78737"/>
              <exon start="79154" stop="79284"/>
              <exon start="79372" stop="79638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79489" stop="80056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79508" stop="79947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79642" stop="80123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79643" stop="80159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79664" stop="80086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79910" stop="80174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGTGAAGGTAATAACGGGGAGGAAAAACATTGAAGAGGTCCACCAAATAGCTAGGATGTTAGAGGCAGAGAGTGGGGGAATACTAGTTGCTGTTGAGCGAGTTAATAAGGGTTATGCGATCATTGTATACCGAGGAAAGAACTACGAAAGGCCTGCTTCATTGAGGCCTCAGACTCTTCTAAGTAAAAGAGAAGCAATGAAGCGCTCTATAGAGGCTCAGCGACGTCAG : TCATTGAAATTACATGTCTTAAAGCTTACACAAAATATAGAGGCTTTGCAGTCACGGTTG : GCCAAGAATGAGGAGATAAGTCATATTCAGTCCCCGGATATAGTTGATAGGCAGGTACCCGTGATGGGCATATCAGATGCTGCAGGTGGAACTAATTACCAGTCTATTGTAGCAAGTCCTATTGAG : GATTCTGGAGATGCTGCAGAAGACACTGACCCCAGTTCTCAGAAAGAATTATCAAATGATTTCTCGGACACAGACCACGATTCGCAGCAAGAATTTCCAATTAATCCGTTTTTCCAATATGAGGGCAAGGTTGAGGCTATGGGTGATACAATTCAACCTCAGCATCAATCTATTTCATCAATCAAAGAGTCGAAAAGTATGTTCAATGTGAATGTGGATCAAGAAACATTCGGCAGTGCAGTGAGTGAATCTGTTTCTAAGTCTTCCAGG : GGAGAAGTTAAGATCCACTTTTCTGAGACCAGAAGTTTCAACAAACCTCGGGAAGTTAACAATAAAATGGAGGTGTCTCAACCTCCTCCTGTAAAACCTCAACAAACACTTAGATCCACCCGGAGTAGGTCCGAAGGGATGTCTACCAGAAGAGTACAGCTTTCCAACAGGGAGAGGCTGCTTCTCAGAAAACAAGCCCTCAAGATGAAGAAGCAACCAGTGCTTGCTGTTG : GGAGGAGCAATATTGTTACTGGAGTTGCAAAAAATATCAAAGAACACTTTAAGAAGTATCCTCTTGCGATTGTGAATGTCAAAGGAAGGGCAAAAGGGACTTCAGTTAGGGAGGTGGTTTTTAAGCTGGAG : CAAGCTACAGGTGCTGTTCTTGTTTCTCAAGAGCCAAGCAAAGTCATATTGTATAGAGGTTGGGGACCAGGTGGAGAGCGTGGTGCTTCTAATGGAAATGACACCAGTAATTCGAAAAACAGCAGAGAGCAAAAGGAACTAATGTCAATATCTCCTGAACTTATATCAGCAATCAGACTTGAATGTGGCTTGCAGTCCAACAATGATATGGAAGTTGCTTCATAGGCAACAACCTTGGTAAAAGGGAAGTTACCAGTTGGTTTTTTTAGGTTCAAAGCCTTGAGCTCTCATCTAACAACGCTTTTGTGCACCCGATGATGGTCTCTGAATTGTCTGTGCATGCATCTAACAATTGCTTTCTTGGTGTGGAGTTGGAATCTAAATTGTGCATCACCTCTCCCATACAAATGAAAGGGAATCGGCTTCCACCAAACTTCTCTCCTTGCAGAATTTCAGTAGCTGGAATAAGTTCCACATGATAATTCCTGTCTCATGGTCATTGTGCATCAACTGGAGAGATTCTGTATGTCAGTTAAGTGGCGCTGCTAATTTACATTTTATGTAAATAGAAGTTTCAATTCAAAAATACGCATCTATTACCATGTCATCTTTTTAATTTTCCCTAGAAACAAAAAAGACTGATGCACATTGCACATGTTCCTTTAGATTACATACTGGTTTTAGATTAGTTATGTTCATGACAAAACAAGTATGTAAACATATAAATTCACCAAAAATCTAATATATGACATTGTCTTTATGACATTCTTTTTAATCAACACTAGGGGCCCGTTTGGACATAA</gDNA_template>
            <first_frame> I  G  E  G  N  N  G  E  E  K  H  *  R  G  P  P  N  S  *  D  V  R  G  R  E  W  G  N  T  S  C  C  *  A  S  *  *  G  L  C  D  H  C  I  P  R  K  E  L  R  K  A  C  F  I  E  A  S  D  S  S  K  *  K  R  S  N  E  A  L  Y  R  G  S  A  T  S   : V  I  E  I  T  C  L  K  A  Y  T  K  Y  R  G  F  A  V  T  V   : G  Q  E  *  G  D  K  S  Y  S  V  P  G  Y  S  *  *  A  G  T  R  D  G  H  I  R  C  C  R  W  N  *  L  P  V  Y  C  S  K  S  Y  *   : G  F  W  R  C  C  R  R  H  *  P  Q  F  S  E  R  I  I  K  *  F  L  G  H  R  P  R  F  A  A  R  I  S  N  *  S  V  F  P  I  *  G  Q  G  *  G  Y  G  *  Y  N  S  T  S  A  S  I  Y  F  I  N  Q  R  V  E  K  Y  V  Q  C  E  C  G  S  R  N  I  R  Q  C  S  E  *  I  C  F  *  V  F  Q   : G  R  S  *  D  P  L  F  *  D  Q  K  F  Q  Q  T  S  G  S  *  Q  *  N  G  G  V  S  T  S  S  C  K  T  S  T  N  T  *  I  H  P  E  *  V  R  R  D  V  Y  Q  K  S  T  A  F  Q  Q  G  E  A  A  S  Q  K  T  S  P  Q  D  E  E  A  T  S  A  C  C  W :   E  E  Q  Y  C  Y  W  S  C  K  K  Y  Q  R  T  L  *  E  V  S  S  C  D  C  E  C  Q  R  K  G  K  R  D  F  S  *  G  G  G  F  *  A  G   : A  S  Y  R  C  C  S  C  F  S  R  A  K  Q  S  H  I  V  *  R  L  G  T  R  W  R  A  W  C  F  *  W  K  *  H  Q  *  F  E  K  Q  Q  R  A  K  G  T  N  V  N  I  S  *  T  Y  I  S  N  Q  T  *  M  W  L  A  V  Q  Q  *  Y  G  S  C  F  I  G  N  N  L  G  K  R  E  V  T  S  W  F  F  *  V  Q  S  L  E  L  S  S  N  N  A  F  V  H  P  M  M  V  S  E  L  S  V  H  A  S  N  N  C  F  L  G  V  E  L  E  S  K  L  C  I  T  S  P  I  Q  M  K  G  N  R  L  P  P  N  F  S  P  C  R  I  S  V  A  G  I  S  S  T  *  *  F  L  S  H  G  H  C  A  S  T  G  E  I  L  Y  V  S  *  V  A  L  L  I  Y  I  L  C  K  *  K  F  Q  F  K  N  T  H  L  L  P  C  H  L  F  N  F  P  *  K  Q  K  R  L  M  H  I  A  H  V  P  L  D  Y  I  L  V  L  D  *  L  C  S  *  Q  N  K  Y  V  N  I  *  I  H  Q  K  S  N  I  *  H  C  L  Y  D  I  L  F  N  Q  H  *  G  P  V  W  T  * </first_frame>
            <second_frame>  L  V  K  V  I  T  G  R  K  N  I  E  E  V  H  Q  I  A  R  M  L  E  A  E  S  G  G  I  L  V  A  V  E  R  V  N  K  G  Y  A  I  I  V  Y  R  G  K  N  Y  E  R  P  A  S  L  R  P  Q  T  L  L  S  K  R  E  A  M  K  R  S  I  E  A  Q  R  R  Q  :  S  L  K  L  H  V  L  K  L  T  Q  N  I  E  A  L  Q  S  R  L  :  A  K  N  E  E  I  S  H  I  Q  S  P  D  I  V  D  R  Q  V  P  V  M  G  I  S  D  A  A  G  G  T  N  Y  Q  S  I  V  A  S  P  I  E  :  D  S  G  D  A  A  E  D  T  D  P  S  S  Q  K  E  L  S  N  D  F  S  D  T  D  H  D  S  Q  Q  E  F  P  I  N  P  F  F  Q  Y  E  G  K  V  E  A  M  G  D  T  I  Q  P  Q  H  Q  S  I  S  S  I  K  E  S  K  S  M  F  N  V  N  V  D  Q  E  T  F  G  S  A  V  S  E  S  V  S  K  S  S  R  :  G  E  V  K  I  H  F  S  E  T  R  S  F  N  K  P  R  E  V  N  N  K  M  E  V  S  Q  P  P  P  V  K  P  Q  Q  T  L  R  S  T  R  S  R  S  E  G  M  S  T  R  R  V  Q  L  S  N  R  E  R  L  L  L  R  K  Q  A  L  K  M  K  K  Q  P  V  L  A  V   : G  R  S  N  I  V  T  G  V  A  K  N  I  K  E  H  F  K  K  Y  P  L  A  I  V  N  V  K  G  R  A  K  G  T  S  V  R  E  V  V  F  K  L  E  :  Q  A  T  G  A  V  L  V  S  Q  E  P  S  K  V  I  L  Y  R  G  W  G  P  G  G  E  R  G  A  S  N  G  N  D  T  S  N  S  K  N  S  R  E  Q  K  E  L  M  S  I  S  P  E  L  I  S  A  I  R  L  E  C  G  L  Q  S  N  N  D  M  E  V  A  S  *  A  T  T  L  V  K  G  K  L  P  V  G  F  F  R  F  K  A  L  S  S  H  L  T  T  L  L  C  T  R  *  W  S  L  N  C  L  C  M  H  L  T  I  A  F  L  V  W  S  W  N  L  N  C  A  S  P  L  P  Y  K  *  K  G  I  G  F  H  Q  T  S  L  L  A  E  F  Q  *  L  E  *  V  P  H  D  N  S  C  L  M  V  I  V  H  Q  L  E  R  F  C  M  S  V  K  W  R  C  *  F  T  F  Y  V  N  R  S  F  N  S  K  I  R  I  Y  Y  H  V  I  F  L  I  F  P  R  N  K  K  D  *  C  T  L  H  M  F  L  *  I  T  Y  W  F  *  I  S  Y  V  H  D  K  T  S  M  *  T  Y  K  F  T  K  N  L  I  Y  D  I  V  F  M  T  F  F  L  I  N  T  R  G  P  F  G  H   </second_frame>
            <third_frame>   W  *  R  *  *  R  G  G  K  T  L  K  R  S  T  K  *  L  G  C  *  R  Q  R  V  G  E  Y  *  L  L  L  S  E  L  I  R  V  M  R  S  L  Y  T  E  E  R  T  T  K  G  L  L  H  *  G  L  R  L  F  *  V  K  E  K  Q  *  S  A  L  *  R  L  S  D  V  S :   H  *  N  Y  M  S  *  S  L  H  K  I  *  R  L  C  S  H  G  W :   P  R  M  R  R  *  V  I  F  S  P  R  I  *  L  I  G  R  Y  P  *  W  A  Y  Q  M  L  Q  V  E  L  I  T  S  L  L  *  Q  V  L  L  R :   I  L  E  M  L  Q  K  T  L  T  P  V  L  R  K  N  Y  Q  M  I  S  R  T  Q  T  T  I  R  S  K  N  F  Q  L  I  R  F  S  N  M  R  A  R  L  R  L  W  V  I  Q  F  N  L  S  I  N  L  F  H  Q  S  K  S  R  K  V  C  S  M  *  M  W  I  K  K  H  S  A  V  Q  *  V  N  L  F  L  S  L  P  G :   E  K  L  R  S  T  F  L  R  P  E  V  S  T  N  L  G  K  L  T  I  K  W  R  C  L  N  L  L  L  *  N  L  N  K  H  L  D  P  P  G  V  G  P  K  G  C  L  P  E  E  Y  S  F  P  T  G  R  G  C  F  S  E  N  K  P  S  R  *  R  S  N  Q  C  L  L  L  :  G  G  A  I  L  L  L  E  L  Q  K  I  S  K  N  T  L  R  S  I  L  L  R  L  *  M  S  K  E  G  Q  K  G  L  Q  L  G  R  W  F  L  S  W  S :   K  L  Q  V  L  F  L  F  L  K  S  Q  A  K  S  Y  C  I  E  V  G  D  Q  V  E  S  V  V  L  L  M  E  M  T  P  V  I  R  K  T  A  E  S  K  R  N  *  C  Q  Y  L  L  N  L  Y  Q  Q  S  D  L  N  V  A  C  S  P  T  M  I  W  K  L  L  H  R  Q  Q  P  W  *  K  G  S  Y  Q  L  V  F  L  G  S  K  P  *  A  L  I  *  Q  R  F  C  A  P  D  D  G  L  *  I  V  C  A  C  I  *  Q  L  L  S  W  C  G  V  G  I  *  I  V  H  H  L  S  H  T  N  E  R  E  S  A  S  T  K  L  L  S  L  Q  N  F  S  S  W  N  K  F  H  M  I  I  P  V  S  W  S  L  C  I  N  W  R  D  S  V  C  Q  L  S  G  A  A  N  L  H  F  M  *  I  E  V  S  I  Q  K  Y  A  S  I  T  M  S  S  F  *  F  S  L  E  T  K  K  T  D  A  H  C  T  C  S  F  R  L  H  T  G  F  R  L  V  M  F  M  T  K  Q  V  C  K  H  I  N  S  P  K  I  *  Y  M  T  L  S  L  *  H  S  F  *  S  T  L  G  A  R  L  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75648" stop="75878"/>
                    <exon start="77117" stop="77176"/>
                    <exon start="77279" stop="77404"/>
                    <exon start="78139" stop="78408"/>
                    <exon start="78506" stop="78737"/>
                    <exon start="79154" stop="79284"/>
                    <exon start="79372" stop="79596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1272</number_coding_nucleotides>
                  <number_encoded_amino_acids>424</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVKVITGRKNIEEVHQIARMLEAESGGILVAVERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQSRLAKNEEISHIQSPDIVDRQVPVMGISDAAGGTNYQSIVASPIEDSGDAAEDTDPSSQKELSNDFSDTDHDSQQEFPINPFFQYEGKVEAMGDTIQPQHQSISSIKESKSMFNVNVDQETFGSAVSESVSKSSRGEVKIHFSETRSFNKPREVNNKMEVSQPPPVKPQQTLRSTRSRSEGMSTRRVQLSNRERLLLRKQALKMKKQPVLAVGRSNIVTGVAKNIKEHFKKYPLAIVNVKGRAKGTSVREVVFKLEQATGAVLVSQEPSKVILYRGWGPGGERGASNGNDTSNSKNSREQKELMSISPELISAIRLECGLQSNNDMEVAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79641" stop="79850"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQSLELSSNNAFVHPMMVSELSVHASNNCFLGVELESKLCITSPIQMKGNRLPPNFSPCRISVAGISST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="85024" PGL_stop="81118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85024" e_stop="84922"/>
            <exon e_start="83833" e_stop="82358"/>
            <exon e_start="81407" e_stop="81118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.424" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85024" e_stop="84922" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="84921" i_stop="83834" i_length="1088"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83833" e_stop="82358" e_length="1476"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.424">
            <gDNA_intron_boundary i_start="82357" i_stop="81408" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81407" e_stop="81118" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85024" stop="84922"/>
              <exon start="83833" stop="83150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85008" stop="84922"/>
              <exon start="83833" stop="83038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85006" stop="84922"/>
              <exon start="83833" stop="83049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85006" stop="84922"/>
              <exon start="83833" stop="83053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85006" stop="84922"/>
              <exon start="83833" stop="83082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85006" stop="84922"/>
              <exon start="83833" stop="83112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84996" stop="84922"/>
              <exon start="83833" stop="83230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84989" stop="84922"/>
              <exon start="83833" stop="83597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84985" stop="84922"/>
              <exon start="83833" stop="83401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84966" stop="84922"/>
              <exon start="83833" stop="83260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84957" stop="84922"/>
              <exon start="83833" stop="83514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84952" stop="84922"/>
              <exon start="83833" stop="83027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83833" stop="83370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83789" stop="83224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83653" stop="83313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83490" stop="82899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83478" stop="82995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83143" stop="82468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83142" stop="82958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83114" stop="82812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82894" stop="82440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82836" stop="82358"/>
              <exon start="81407" stop="81238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82629" stop="82358"/>
              <exon start="81407" stop="81118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82629" stop="82358"/>
              <exon start="81407" stop="81150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82629" stop="82358"/>
              <exon start="81407" stop="81202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82556" stop="82358"/>
              <exon start="81407" stop="81119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82429" stop="82358"/>
              <exon start="81407" stop="81128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG : GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAGGACCCAGAGCTAGAAAGGAGGATCAGTGGAGCATGCAGAGAGGGAGCTACAACAGGCAGCTGCTGCTTGATTCTTTTATGAG : TTTGCTGTTTGATACCATGGGAATAAATTTTGAGAAGTACCAGAAGTATGAATGTGGGAGGGGAAAGCAGGACGCAGAGCTTCCCTATATCCAGCCACTTTTTATTATCAAACTTGTGTAGAACTATTGTTACATTGTTGGCCCAATGGGTAATTTATGTTTCAGAGCTGGTACATCTAATGTCTTAATGTTTCCTTACATTATCATTGCCATGGTTTTGGTAGTTGAAAGATGCTTTAATATTTGTCATGTTGCGTTAAATAAGATCTACACTTTGGCAATTCCAATTT</gDNA_template>
            <first_frame> F  F  L  F  L  *  E  R  E  L  Q  S  H  P  N  L  L  E  N  Q  L  N  F  V  D  *  S  H  F  C  F  N  I  H   : G  T  Y  K  G  P  S  F  S  T  T  N  C  I  S  S  A  F  *  *  K  M  G  P  I  W  *  V  I  *  H  S  G  C  I  N  C  *  H  S  P  T  Y  T  P  T  P  T  S  R  E  D  S  L  W  W  P  *  R  *  G  S  Y  F  H  K  S  L  R  I  A  *  P  L  P  Q  R  C  H  E  A  R  R  L  V  Q  N  K  R  S  C  H  Q  G  F  *  L  D  R  E  *  N  E  E  I  W  S  S  R  T  W  W  C  W  F  S  I  W  S  Q  M  V  L  H  A  K  D  N  R  W  P  S  F  I  S  C  R  Q  C  *  *  K  *  T  W  N  L  *  R  Q  G  N  H  A  A  *  P  T  Q  V  V  G  R  L  S  D  C  R  S  G  D  E  S  *  S  C  L  Y  L  Y  Q  G  R  V  C  E  *  K  V  E  P  S  E  G  *  T  R  S  L  *  S  W  I  V  G  E  K  C  L  W  I  W  L  *  F  *  R  I  Y  S  F  W  C  W  C  L  Y  L  W  *  R  D  S  S  S  G  E  P  *  G  Q  T  R  Q  T  K  I  E  A  S  I  S  S  *  C  R  T  I  W  M  S  N  N  C  Y  K  C  *  N  S  S  C  F  T  N  H  L  K  A  W  S  R  V  V  C  *  F  W  P  E  E  *  C  R  D  K  A  V  L  H  L  R  P  C  *  Q  A  L  Y  S  *  R  G  N  E  Y  F  I  E  G  A  A  R  E  A  L  W  W  C  A  W  R  M  G  Q  F  A  C  C  Y  T  R  R  F  I  C  S  T  A  S  Q  E  H  M  *  G  C  T  Y  G  F  *  C  T  Q  S  C  A  V  R  V  G  N  C  C  C  N  C  H  G  Q  V  N  *  C  C  R  C  N  C  K  A  L  V  L  L  Q  A  R  E  L  W  S  M  Y  T  M  *  G  R  H  R  M  A  L  D  D  H  G  K  N  E  G  W  Q  C  K  V  G  R  D  *  H  A  P  R  G  D  K  T  D  *  R  A  H  Y  L  C  L  G  *  R  C  C  L  A  S  T  G  S  Y  *  A  L  *  D  P  E  L  E  R  R  I  S  G  A  C  R  E  G  A  T  T  G  S  C  C  L  I  L  L  *   : V  C  C  L  I  P  W  E  *  I  L  R  S  T  R  S  M  N  V  G  G  E  S  R  T  Q  S  F  P  I  S  S  H  F  L  L  S  N  L  C  R  T  I  V  T  L  L  A  Q  W  V  I  Y  V  S  E  L  V  H  L  M  S  *  C  F  L  T  L  S  L  P  W  F  W  *  L  K  D  A  L  I  F  V  M  L  R  *  I  R  S  T  L  W  Q  F  Q  F </first_frame>
            <second_frame>  F  S  Y  F  Y  E  K  E  S  F  N  L  T  L  I  C  W  R  I  S  *  I  S  S  I  N  H  I  S  A  S  I  F  M  :  A  P  I  K  G  L  L  S  L  Q  R  T  A  L  A  Q  R  S  S  E  R  W  G  Q  Y  G  R  L  F  S  T  Q  A  A  S  T  A  S  T  P  Q  P  T  P  P  P  P  P  P  E  R  T  H  F  G  G  L  K  D  E  D  R  I  F  T  N  L  Y  G  L  H  D  P  Y  L  K  G  A  M  K  R  G  D  W  Y  R  T  K  D  L  V  I  K  G  S  D  W  I  V  N  E  M  K  K  S  G  L  R  G  R  G  G  A  G  F  P  S  G  L  K  W  S  F  M  P  K  T  T  D  G  R  P  S  Y  L  V  V  N  A  D  E  S  E  P  G  T  C  K  D  R  E  I  M  R  H  D  P  H  K  L  L  E  G  C  L  I  A  G  V  G  M  R  A  R  A  A  Y  I  Y  I  R  G  E  Y  V  N  E  R  L  S  L  Q  K  A  R  Q  E  A  Y  E  A  G  L  L  G  K  N  A  C  G  S  G  Y  D  F  D  V  Y  I  H  F  G  A  G  A  Y  I  C  G  E  E  T  A  L  L  E  S  L  E  G  K  Q  G  K  P  R  L  K  P  P  F  P  A  N  A  G  L  Y  G  C  P  T  T  V  T  N  V  E  T  V  A  V  S  P  T  I  L  R  R  G  P  E  W  F  A  S  F  G  R  K  N  N  A  G  T  K  L  F  C  I  S  G  H  V  N  K  P  C  T  V  E  E  E  M  S  I  S  L  K  E  L  L  E  R  H  C  G  G  V  R  G  G  W  D  N  L  L  A  V  I  P  G  G  S  S  V  P  L  L  P  K  N  I  C  E  D  V  L  M  D  F  D  A  L  K  A  V  Q  S  G  L  G  T  A  A  V  I  V  M  D  K  S  T  D  V  V  D  A  I  A  R  L  S  Y  F  Y  K  H  E  S  C  G  Q  C  T  P  C  R  E  G  T  G  W  L  W  M  I  M  E  R  M  K  V  G  N  A  K  L  E  E  I  D  M  L  Q  E  V  T  K  Q  I  E  G  H  T  I  C  A  L  G  D  A  A  A  W  P  V  Q  G  L  I  R  H  F  R  T  Q  S  *  K  G  G  S  V  E  H  A  E  R  E  L  Q  Q  A  A  A  A  *  F  F  Y  E  :  F  A  V  *  Y  H  G  N  K  F  *  E  V  P  E  V  *  M  W  E  G  K  A  G  R  R  A  S  L  Y  P  A  T  F  Y  Y  Q  T  C  V  E  L  L  L  H  C  W  P  N  G  *  F  M  F  Q  S  W  Y  I  *  C  L  N  V  S  L  H  Y  H  C  H  G  F  G  S  *  K  M  L  *  Y  L  S  C  C  V  K  *  D  L  H  F  G  N  S  N   </second_frame>
            <third_frame>   F  L  I  F  M  R  K  R  A  S  I  S  P  *  S  A  G  E  S  A  E  F  R  R  L  I  T  F  L  L  Q  Y  S  W :   H  L  *  R  A  F  F  L  Y  N  E  L  H  *  L  S  V  L  V  K  D  G  A  N  M  V  G  Y  L  A  L  R  L  H  Q  L  L  A  L  P  N  L  H  P  H  P  H  L  P  R  G  L  T  L  V  A  L  K  M  R  I  V  F  S  Q  I  S  T  D  C  M  T  L  T  S  K  V  P  *  S  E  E  I  G  T  E  Q  K  I  L  S  S  R  V  L  T  G  S  *  M  K  *  R  N  L  V  F  E  D  V  V  V  L  V  F  H  L  V  S  N  G  P  S  C  Q  R  Q  Q  M  A  V  L  H  I  L  S  S  M  L  M  K  V  N  L  E  P  V  K  T  G  K  S  C  G  M  T  H  T  S  C  W  K  A  V  *  L  Q  E  W  G  *  E  L  E  L  L  I  F  I  S  G  E  S  M  *  M  K  G  *  A  F  R  R  L  D  K  K  P  M  K  L  D  C  W  G  K  M  L  V  D  L  V  M  I  L  T  Y  I  F  I  L  V  L  V  P  I  F  V  V  K  R  Q  L  F  W  R  A  L  R  A  N  K  A  N  Q  D  *  S  L  H  F  Q  L  M  Q  D  Y  M  D  V  Q  Q  L  L  Q  M  L  K  Q  *  L  F  H  Q  P  S  *  G  V  V  Q  S  G  L  L  V  L  A  G  R  I  M  P  G  Q  S  C  F  A  S  Q  A  M  L  T  S  P  V  Q  L  K  R  K  *  V  F  H  *  R  S  C  *  R  G  T  V  V  V  C  V  E  D  G  T  I  C  L  L  L  Y  Q  E  V  H  L  F  H  C  F  P  R  T  Y  V  R  M  Y  L  W  I  L  M  H  S  K  L  C  S  Q  G  W  E  L  L  L  *  L  S  W  T  S  Q  L  M  L  *  M  Q  L  Q  G  S  R  T  S  T  S  T  R  V  V  V  N  V  H  H  V  G  K  A  Q  D  G  F  G  *  S  W  K  E  *  R  L  A  M  Q  S  W  K  R  L  T  C  S  K  R  *  Q  N  R  L  K  G  T  L  F  V  P  W  V  T  L  L  L  G  Q  Y  R  V  L  L  G  T  L  G  P  R  A  R  K  E  D  Q  W  S  M  Q  R  G  S  Y  N  R  Q  L  L  L  D  S  F  M  S :   L  L  F  D  T  M  G  I  N  F  E  K  Y  Q  K  Y  E  C  G  R  G  K  Q  D  A  E  L  P  Y  I  Q  P  L  F  I  I  K  L  V  *  N  Y  C  Y  I  V  G  P  M  G  N  L  C  F  R  A  G  T  S  N  V  L  M  F  P  Y  I  I  I  A  M  V  L  V  V  E  R  C  F  N  I  C  H  V  A  L  N  K  I  Y  T  L  A  I  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84960" stop="84922"/>
                    <exon start="83833" stop="82427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1443</number_coding_nucleotides>
                  <number_encoded_amino_acids>481</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSINHISASIFMAPIKGLLSLQRTALAQRSSERWGQYGRLFSTQAASTASTPQPTPPPPPPERTHFGGLKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSISLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRTQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="88670" PGL_stop="94102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88670" e_stop="88990"/>
            <exon e_start="89561" e_stop="89673"/>
            <exon e_start="92533" e_stop="92582"/>
            <exon e_start="92713" e_stop="92784"/>
            <exon e_start="93434" e_stop="93494"/>
            <exon e_start="93705" e_stop="94102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88670" e_stop="88990" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="88991" i_stop="89560" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89561" e_stop="89673" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.718">
            <gDNA_intron_boundary i_start="89674" i_stop="92532" i_length="2859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92533" e_stop="92582" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92583" i_stop="92712" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92713" e_stop="92784" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.854">
            <gDNA_intron_boundary i_start="92785" i_stop="93433" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93434" e_stop="93494" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="93495" i_stop="93704" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93705" e_stop="94102" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88670" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88670" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88754" stop="88990"/>
              <exon start="89561" stop="89645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88766" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88771" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88774" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88791" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88798" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88799" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88800" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88801" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88802" stop="88968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88803" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88804" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88804" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88806" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88806" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88806" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88806" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88807" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88810" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88810" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88817" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88819" stop="88990"/>
              <exon start="89561" stop="89648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88842" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88929" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88935" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88955" stop="88990"/>
              <exon start="89561" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89607" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89607" stop="89673"/>
              <exon start="92533" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="93866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92535" stop="92582"/>
              <exon start="92713" stop="92784"/>
              <exon start="93434" stop="93494"/>
              <exon start="93705" stop="94017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93478" stop="93494"/>
              <exon start="93705" stop="94102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93487" stop="93494"/>
              <exon start="93705" stop="94035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93775" stop="94102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA : TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG : GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG : GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG : GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG : ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</gDNA_template>
            <first_frame> P  F  I  N  L  F  *  L  *  F  F  F  R  Y  *  V  K  R  K  G  E  N  G  *  *  Y  I  N  I  N  A  V  R  K  R  F  F  P  F  R  S  C  G  G  *  Q  N  H  I  F  D  S  I  G  K  S  E  Q  K  T  R  Q  R  S  N  N  Y  R  N  P  P  *  E  L  F  K  L  P  P  P  T  A  L  A  L  E  F  H  L  L  L  L  V  L  S  L  L  L  L  I  A  A  S  P  *  P  K  :  W  S  H  Q  R  N  L  L  K  S  *  G  N  S  R  S  S  M  L  A  G  Q  K  H  I  S  A  W  T  K  V  L  L  L  W  S  S  R :   V  W  Q  S  T  R  I  H  W  V  L  H  S  A  P  A   : G  I  M  M  T  K  L  Q  K  R  S  R  A  S  G  I  V  R  V  Y  Q  *  E  R   : G  R  S  V  T  A  C  F  F  *  P  L  I  M  I  L  L  E  K  N  R :   R  L  L  W  R  R  L  R  K  Q  Q  P  T  C  D  A  R  T  S  Y  T  C  Y  E  H  Y  V  F  V  V  H  V  Y  L  S  I  R  *  R  A  T  I  Q  F  *  C  D  M  L  L  K  P  H  P  L  H  C  C  D  S  D  L  V  *  *  D  W  V  G  E  *  Q  C  N  Y  A  N  C  C  V  M  H  L  D  C  M  S  H  N  S  Y  *  G  I  L  G  G  F  S  F  S  *  C  K  S  *  F  C  I  K  L  E  S  I  S  K  S  C  F  V  K  F  N  P  S  R  L  T  C  *  *  *  </first_frame>
            <second_frame>  R  L  L  I  Y  F  N  Y  N  F  S  S  D  I  R  *  K  E  K  E  R  T  D  S  N  I  *  I  S  T  L  Y  E  R  D  F  F  L  S  E  V  V  V  V  N  R  I  T  F  L  T  Q  S  E  S  R  S  R  K  R  D  N  E  A  T  T  T  G  I  R  H  E  N  S  S  S  F  H  L  L  Q  R  W  L  W  N  F  I  F  C  Y  S  S  *  A  F  F  Y  S  S  L  P  H  R  S  Q  N :   G  A  I  R  E  I  C  *  N  H  E  E  I  L  G  A  V  C  S  Q  V  R  N  I  F  L  H  G  Q  R  C  Y  F  C  G  H  Q   : G  F  G  R  A  Q  G  Y  I  G  C  S  T  L  P  L  Q  :  A  L  *  *  Q  S  C  R  S  A  A  G  L  L  E  L  S  V  C  T  N  E  R  E  :  E  G  V  S  L  H  A  F  S  D  P  *  *  *  F  C  W  R  R  T   : D  D  Y  Y  G  G  D  *  G  N  N  S  Q  H  V  M  L  G  H  L  I  H  A  M  N  I  T  F  L  L  Y  M  Y  I  *  V  L  D  E  E  Q  Q  S  S  S  D  V  T  C  C  *  N  P  I  H  Y  I  V  V  I  L  I  S  S  S  E  I  G  W  V  N  N  S  A  I  M  L  T  V  V  *  C  I  *  I  V  *  V  I  T  H  I  R  G  F  W  V  A  S  A  S  A  N  A  N  P  D  F  V  *  N  W  N  Q  F  P  K  A  A  L  *  S  S  I  P  V  V  *  R  V  N  N  E </second_frame>
            <third_frame>   V  Y  *  F  I  L  I  I  I  F  L  Q  I  L  G  E  K  K  R  R  E  R  I  V  I  Y  K  Y  Q  R  C  T  K  E  I  F  S  F  P  K  L  W  W  L  T  E  S  H  F  *  L  N  R  K  V  G  A  E  N  E  T  T  K  Q  Q  L  P  E  S  A  M  R  T  L  Q  A  S  T  S  Y  S  V  G  F  G  I  S  S  F  A  T  R  P  K  P  S  S  T  H  R  C  L  T  V  A  K   : M  E  P  S  E  K  S  V  E  I  M  R  K  F  S  E  Q  Y  A  R  R  S  E  T  Y  F  C  M  D  K  G  V  T  S  V  V  I  K  :  G  L  A  E  H  K  D  T  L  G  A  P  L  C  P  C  R :   H  Y  D  D  K  A  A  E  A  Q  Q  G  F  W  N  C  P  C  V  P  M  R  E  R :   K  E  C  H  C  M  L  F  L  T  P  D  N  D  F  A  G  E  E  Q  :  T  I  T  M  E  E  I  K  E  T  T  A  N  M  *  C  S  D  I  L  Y  M  L  *  T  L  R  F  C  C  T  C  I  F  E  Y  *  M  K  S  N  N  P  V  L  M  *  H  V  A  E  T  P  S  I  T  L  L  *  F  *  S  R  L  V  R  L  G  G  *  I  T  V  Q  L  C  *  L  L  C  D  A  S  R  L  Y  E  S  *  L  I  L  G  D  F  G  W  L  Q  L  Q  L  M  Q  I  L  I  L  Y  K  T  G  I  N  F  Q  K  L  L  C  E  V  Q  S  Q  S  S  D  V  L  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88822" stop="88990"/>
                    <exon start="89561" stop="89673"/>
                    <exon start="92533" stop="92582"/>
                    <exon start="92713" stop="92784"/>
                    <exon start="93434" stop="93494"/>
                    <exon start="93705" stop="93749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRKVGAENETTKQQLPESAMRTLQASTSYSVGFGISSFATRPKPSSTHRCLTVAKMEPSEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTITMEEIKETTANM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90139" e_stop="90871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="90139" e_stop="90871" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90139" stop="90871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90139" stop="90865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</gDNA_template>
            <first_frame> F  *  T  L  G  Y  S  L  L  G  Y  K  V  R  I  Y  R  I  C  L  E  T  V  L  S  F  Y  *  L  Q  D  N  G  I  L  Y  T  *  S  L  G  Q  A  A  S  V  *  C  H  F  S  S  K  K  L  L  L  Y  Y  S  C  L  I  I  V  E  *  Y  F  V  A  Q  K  F  Y  F  G  L  I  T  S  *  K  K  K  *  Y  L  W  F  R  A  *  I  A  N  H  F  F  P  G  I  L  H  F  I  F  Q  V  *  V  C  V  R  V  S  S  R  S  I  F  L  C  K  F  V  K  V  *  I  *  N  C  G  A  V  E  T  L  E  L  R  G  Y  Q  L  S  K  T  Y  N  E  R  *  T  I  A  Q  S  *  L  Y  N  K  G  Q  L  Y  K  E  F  L  T  Q  R  R  E  *  E  L  R  N  F  *  *  C  E  Y  K  I  Y  H  L  I  N  K  I  E  E  *  I  L  S  S  H  K  Q  D  R  R  I  D  L  S  Q  V  S  E  N  V  T  V  T  E  L  I  D  C  *  I  Q  A  N  H  K  D  Q  S  N  M  L  S  F  F  </first_frame>
            <second_frame>  F  E  R  *  D  T  P  S  *  A  I  K  *  E  F  I  V  S  A  W  K  L  Y  C  R  F  T  N  S  K  I  M  A  F  C  I  L  E  V  *  D  K  L  Q  V  C  D  V  I  S  V  P  K  S  C  F  Y  T  I  A  A  *  L  L  L  N  S  I  L  L  L  R  S  S  T  L  V  L  L  P  H  K  K  K  S  D  T  F  G  L  E  L  E  *  P  I  T  F  S  Q  V  S  F  T  L  Y  F  R  F  R  C  V  F  V  Y  L  L  E  A  Y  F  Y  V  S  S  *  K  Y  E  F  K  I  V  E  L  W  K  L  L  N  *  G  D  I  N  Y  Q  R  L  I  M  R  D  K  Q  *  H  K  A  N  Y  I  I  K  D  S  Y  T  R  N  F  *  H  K  E  G  N  K  N  *  E  T  F  N  N  V  S  T  R  F  T  I  S  *  T  R  *  K  N  R  F  Y  H  L  I  N  K  I  E  E  *  I  Y  L  K  F  Q  R  M  *  L  *  R  S  *  *  I  A  K  Y  K  P  I  T  K  I  N  P  T  C  C  P  S  F </second_frame>
            <third_frame>   L  N  V  R  I  L  P  P  R  L  *  S  E  N  L  S  Y  L  L  G  N  C  I  V  V  L  L  T  P  R  *  W  H  S  V  Y  L  K  F  R  T  S  C  K  C  V  M  S  F  Q  F  Q  K  V  A  S  I  L  *  L  L  D  Y  C  *  I  V  F  C  C  S  E  V  L  L  W  S  Y  Y  L  I  K  K  K  V  I  P  L  V  *  S  L  N  S  Q  S  L  F  P  R  Y  P  S  L  Y  I  S  G  L  G  V  C  S  C  I  F  *  K  H  I  S  M  *  V  R  E  S  M  N  L  K  L  W  S  C  G  N  S  *  T  E  G  I  S  I  I  K  D  L  *  *  E  I  N  N  S  T  K  L  I  I  *  *  R  T  V  I  Q  G  I  F  N  T  K  K  G  I  R  I  E  K  L  L  I  M  *  V  Q  D  L  P  S  H  K  Q  D  R  R  I  D  F  I  I  S  *  T  R  *  K  N  R  F  I  S  S  F  R  E  C  D  C  D  G  V  N  R  L  L  N  T  S  Q  S  Q  R  S  I  Q  H  A  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001M12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="95997" PGL_stop="99959"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95997" e_stop="96041"/>
            <exon e_start="96137" e_stop="96213"/>
            <exon e_start="96312" e_stop="96442"/>
            <exon e_start="96599" e_stop="96648"/>
            <exon e_start="96769" e_stop="97271"/>
            <exon e_start="98095" e_stop="98175"/>
            <exon e_start="99312" e_stop="99374"/>
            <exon e_start="99615" e_stop="99959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95997" e_stop="96041" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96137" e_stop="96213" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96312" e_stop="96442" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.874">
            <gDNA_intron_boundary i_start="96443" i_stop="96598" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96599" e_stop="96648" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96769" e_stop="97271" e_length="503"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98095" e_stop="98175" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99312" e_stop="99374" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="99615" e_stop="99959" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95997" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96442"/>
              <exon start="96599" stop="96648"/>
              <exon start="96769" stop="97193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96034" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96442"/>
              <exon start="96599" stop="96648"/>
              <exon start="96769" stop="97102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96038" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96442"/>
              <exon start="96599" stop="96648"/>
              <exon start="96769" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96165" stop="96213"/>
              <exon start="96312" stop="96442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97012" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97067" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG : TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> L  A  R  *  V  L  E  Y  R  H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N   : V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  L  L  A  E  F  W  S  I  D  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  :  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   C  S  L  S  F  G  V  *  T  Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R :   V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96160" stop="96213"/>
                    <exon start="96312" stop="96442"/>
                    <exon start="96599" stop="96648"/>
                    <exon start="96769" stop="97271"/>
                    <exon start="98095" stop="98175"/>
                    <exon start="99312" stop="99374"/>
                    <exon start="99615" stop="99659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSQMSRPQVTITLGRSGQKVVKRSSASQGNGFSQQTLSRGKRSLGETYRTDSEDPTKSLRKRVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96024" e_stop="96041"/>
            <exon e_start="96137" e_stop="96213"/>
            <exon e_start="96312" e_stop="96648"/>
            <exon e_start="96769" e_stop="97271"/>
            <exon e_start="98095" e_stop="98175"/>
            <exon e_start="99312" e_stop="99374"/>
            <exon e_start="99615" e_stop="99959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96024" e_stop="96041" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="96042" i_stop="96136" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96137" e_stop="96213" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96214" i_stop="96311" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96312" e_stop="96648" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="96649" i_stop="96768" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96769" e_stop="97271" e_length="503"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98095" e_stop="98175" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99312" e_stop="99374" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="99615" e_stop="99959" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96024" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96648"/>
              <exon start="96769" stop="97138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96025" stop="96041"/>
              <exon start="96137" stop="96213"/>
              <exon start="96312" stop="96648"/>
              <exon start="96769" stop="96897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96165" stop="96213"/>
              <exon start="96312" stop="96442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97012" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97067" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N  G  K  I  F  C  L  L  F  W  L  S  *  C  R  L  Y  L  I  Y  C  F  Q  N  N  G  R  N  I  K  K  L  S  K  L  E  W  *  F  *  F  Y  L  I  V  E  V  L  L  L  F  L  Q  V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  V  K  S  F  V  C  C  S  G  *  A  N  V  G  C  I  *  F  I  V  F  R  I  M  E  G  I  *  K  N  Y  Q  S  *  S  G  S  F  D  F  I  *  *  W  K  F  C  Y  C  F  C  K  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R  *  N  L  L  F  V  V  L  V  E  L  M  *  V  V  S  N  L  L  F  S  E  *  W  K  E  Y  K  K  T  I  K  V  R  V  V  V  L  I  L  F  D  S  G  S  F  A  I  V  F  A  S  V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96513" stop="96648"/>
                    <exon start="96769" stop="97271"/>
                    <exon start="98095" stop="98175"/>
                    <exon start="99312" stop="99374"/>
                    <exon start="99615" stop="99659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKEYKKTIKVRVVVLILFDSGSFAIVFASVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96764" e_stop="97271"/>
            <exon e_start="98095" e_stop="98175"/>
            <exon e_start="99312" e_stop="99374"/>
            <exon e_start="99615" e_stop="99959"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="0.998"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="96764" e_stop="97271" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="97272" i_stop="98094" i_length="823"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98095" e_stop="98175" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98176" i_stop="99311" i_length="1136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99312" e_stop="99374" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="99375" i_stop="99614" i_length="240"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="99615" e_stop="99959" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96764" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96764" stop="97208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97012" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97067" stop="97271"/>
              <exon start="98095" stop="98175"/>
              <exon start="99312" stop="99374"/>
              <exon start="99615" stop="99959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> *  R  C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </first_frame>
            <second_frame>  K  G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </second_frame>
            <third_frame>   K  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96765" stop="97271"/>
                    <exon start="98095" stop="98175"/>
                    <exon start="99312" stop="99374"/>
                    <exon start="99615" stop="99659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="100771" PGL_stop="99923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100771" e_stop="100640"/>
            <exon e_start="100533" e_stop="99923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100771" e_stop="100640" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100639" i_stop="100534" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="100533" e_stop="99923" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100771" stop="100640"/>
              <exon start="100533" stop="99966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100771" stop="100640"/>
              <exon start="100533" stop="100092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100771" stop="100640"/>
              <exon start="100533" stop="100129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100771" stop="100640"/>
              <exon start="100533" stop="100198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100765" stop="100640"/>
              <exon start="100533" stop="99991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100763" stop="100640"/>
              <exon start="100533" stop="100269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100762" stop="100640"/>
              <exon start="100533" stop="100200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100640"/>
              <exon start="100533" stop="100197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100755" stop="100640"/>
              <exon start="100533" stop="100260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100645" stop="100640"/>
              <exon start="100533" stop="99923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100507" stop="99991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100507" stop="100001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100507" stop="100001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100465" stop="99991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG : GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCTT</gDNA_template>
            <first_frame> K  N  K  N  T  R  K  K  K  M  E  G  G  T  E  A  Y  P  D  L  G  R  H  C  Q  L  S  D  C  H  Q  L  D  F  L  P  F  T  C  H  A  C  L  K  :  V  F  C  V  E  H  R  S  C  K  S  H  E  C  P  K  S  D  F  N  S  R  I  V  L  V  C  E  I  C  S  M  S  M  E  T  T  G  C  K  V  E  D  H  K  A  I  L  Q  K  H  E  E  S  G  D  C  D  P  K  K  K  K  K  K  P  T  C  P  V  K  R  C  K  G  I  L  T  F  S  N  T  S  T  C  K  I  C  R  I  Q  V  C  L  R  H  R  F  P  A  D  H  A  C  N  P  T  S  S  S  S  Q  L  L  L  K  E  P  N  N  K  F  L  T  A  L  L  A  R  N  G  K  D  C  G  N  K  S  R  A  S  S  P  S  P  A  N  P  S  V  K  A  C  *  S  F  H  S  T  L  L  F  I  C  L  L  *  L  H  Y  F  M  E  N  N  V  V  L  F  S  I  S  P  S  L  L  *  *  N  N  E  F  K  N  D  I  T  I  R  N  H  I  I   </first_frame>
            <second_frame>  R  T  K  I  H  E  R  R  K  W  K  E  E  Q  K  P  I  Q  I  *  V  D  I  A  N  Y  L  I  A  I  N  S  I  F  S  L  L  P  A  M  P  V  *  R :   Y  F  V  W  N  I  D  H  A  S  L  M  N  A  Q  N  L  T  L  T  A  E  S  F  W  F  A  K  F  V  L  C  P  W  K  L  P  A  V  K  L  K  T  T  K  Q  Y  Y  K  N  T  R  N  L  G  I  V  T  L  R  R  R  R  R  N  L  P  V  L  S  K  D  A  R  G  F  *  P  S  Q  T  L  A  L  A  R  Y  A  G  F  K  F  A  S  D  T  G  S  L  L  I  T  P  V  T  P  L  L  H  H  H  S  C  C  *  R  N  P  I  T  S  F  *  L  L  C  L  Q  G  M  G  K  I  V  G  I  K  V  V  P  H  L  Q  A  L  R  T  L  L  *  K  L  V  D  R  F  T  A  H  Y  Y  S  F  V  F  C  N  Y  I  I  L  W  K  T  M  L  F  Y  F  Q  F  L  P  P  F  Y  D  K  T  T  N  L  R  M  T  *  Q  F  G  I  I  *  S  </second_frame>
            <third_frame>   E  Q  K  Y  T  K  E  E  N  G  R  R  N  R  S  L  S  R  F  R  *  T  L  P  T  I  *  L  P  S  T  R  F  S  P  F  Y  L  P  C  L  F  K   : G  I  L  C  G  T  *  I  M  Q  V  S  *  M  P  K  I  *  L  *  Q  P  N  R  F  G  L  R  N  L  F  Y  V  H  G  N  Y  R  L  *  S  *  R  P  Q  S  N  I  T  K  T  R  G  I  W  G  L  *  P  *  E  E  E  E  E  T  Y  L  S  C  Q  K  M  Q  G  D  F  D  L  L  K  H  *  H  L  Q  D  M  P  D  S  S  L  P  Q  T  Q  V  P  C  *  S  R  L  *  P  H  F  F  I  I  T  A  V  A  K  G  T  Q  *  Q  V  F  D  C  F  A  C  K  E  W  E  R  L  W  E  *  K  S  C  L  I  S  K  P  C  E  P  F  C  E  S  L  L  I  V  S  Q  H  I  T  I  H  L  S  F  V  I  T  L  F  Y  G  K  Q  C  C  S  I  F  N  F  S  L  P  S  M  I  K  Q  R  I  *  E  *  H  N  N  S  E  S  Y  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100771" stop="100640"/>
                    <exon start="100533" stop="100072"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKNTRKKKMEGGTEAYPDLGRHCQLSDCHQLDFLPFTCHACLKVFCVEHRSCKSHECPKSDFNSRIVLVCEICSMSMETTGCKVEDHKAILQKHEESGDCDPKKKKKKPTCPVKRCKGILTFSNTSTCKICRIQVCLRHRFPADHACNPTSSSSQLLLKEPNNKFLTALLARNGKDCGNKSRASSPSPANPSVKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="99988" PGL_stop="100542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99988" e_stop="100542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="99988" e_stop="100542" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99988" stop="100542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAATTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTGCACATC</gDNA_template>
            <first_frame> R  N  *  K  *  N  N  I  V  F  H  K  I  M  *  L  Q  K  T  N  E  *  *  C  A  V  K  R  S  T  S  F  H  R  R  V  R  R  A  W  R  *  G  T  T  F  I  P  T  I  F  P  I  P  C  K  Q  S  S  Q  K  L  V  I  G  F  L  *  Q  Q  L  *  *  *  R  S  G  V  T  G  V  I  S  R  E  P  V  S  E  A  N  L  N  P  A  Y  L  A  S  A  S  V  *  E  G  Q  N  P  L  A  S  F  D  R  T  G  R  F  L  L  L  L  L  R  V  T  I  P  R  F  L  V  F  L  *  Y  C  F  V  V  F  N  F  T  A  G  S  F  H  G  H  R  T  N  F  A  N  Q  N  D  S  A  V  K  V  R  F  W  A  F  M  R  L  A  *  S  M  F  H  T  K  Y  L  H  I </first_frame>
            <second_frame>  E  I  E  N  R  T  T  L  F  S  I  K  *  C  N  Y  K  R  Q  M  N  S  N  V  L  *  N  D  Q  Q  A  F  T  E  G  F  A  G  L  G  D  E  A  R  L  L  F  P  Q  S  F  P  F  L  A  S  K  A  V  K  N  L  L  L  G  S  F  S  N  S  C  D  D  E  E  V  G  L  Q  A  *  S  A  G  N  L  C  L  R  Q  T  *  I  R  H  I  L  Q  V  L  V  F  E  K  V  K  I  P  L  H  L  L  T  G  Q  V  G  F  F  F  F  F  L  G  S  Q  S  P  D  S  S  C  F  C  N  I  A  L  W  S  S  T  L  Q  P  V  V  S  M  D  I  E  Q  I  S  Q  T  K  T  I  R  L  L  K  S  D  F  G  H  S  *  D  L  H  D  L  C  S  T  Q  N  T  C  T   </second_frame>
            <third_frame>   K  L  K  I  E  Q  H  C  F  P  *  N  N  V  I  T  K  D  K  *  I  V  M  C  C  E  T  I  N  K  L  S  Q  K  G  S  Q  G  L  E  M  R  H  D  F  Y  S  H  N  L  S  H  S  L  Q  A  K  Q  S  K  T  C  Y  W  V  P  L  A  T  A  V  M  M  K  K  W  G  Y  R  R  D  Q  Q  G  T  C  V  *  G  K  L  E  S  G  I  S  C  K  C  *  C  L  R  R  S  K  S  P  C  I  F  *  Q  D  R  *  V  S  S  S  S  S  *  G  H  N  P  Q  I  P  R  V  F  V  I  L  L  C  G  L  Q  L  Y  S  R  *  F  P  W  T  *  N  K  F  R  K  P  K  R  F  G  C  *  S  Q  I  L  G  I  H  E  T  C  M  I  Y  V  P  H  K  I  P  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100265" stop="100501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRHILQVLVFEKVKIPLHLLTGQVGFFFFFLGSQSPDSSCFCNIALWSSTLQPVVSMDIEQISQTKTIRLLKSDFGHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100050" stop="100253"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVMCCETINKLSQKGSQGLEMRHDFYSHNLSHSLQAKQSKTCYWVPLATAVMMKKWGYRRDQQGTCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="106001" PGL_stop="106967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106001" e_stop="106967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="106001" e_stop="106967" e_length="967"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106001" stop="106654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106227" stop="106967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106227" stop="106676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</gDNA_template>
            <first_frame> E  D  V  H  F  C  S  S  P  Q  Q  A  Q  S  *  I  F  E  T  F  C  F  H  S  Y  L  N  L  K  D  *  I  L  K  L  L  F  F  F  L  H  *  N  G  Y  *  Q  A  K  M  E  N  F  I  S  Q  V  S  I  K  T  T  S  Y  S  Y  R  I  C  L  S  Y  F  W  F  S  H  G  *  P  C  N  R  F  F  R  P  Y  F  *  A  S  L  C  S  C  L  Q  I  T  F  F  Y  P  C  S  S  *  W  L  C  S  *  F  L  Y  C  D  P  *  L  S  S  Q  V  Y  N  P  Q  F  L  P  F  F  F  S  *  P  T  K  T  H  Q  F  S  H  S  *  K  S  R  F  H  I  E  G  H  P  K  T  P  R  C  Y  K  I  *  W  R  P  G  Y  A  D  G  N  *  T  E  P  G  T  E  S  H  I  N  E  F  R  G  I  C  D  S  *  K  W  T  H  L  L  L  F  V  V  S  L  *  L  *  N  P  K  P  K  F  L  *  R  R  *  T  T  C  E  I  E  E  F  P  N  I  *  T  R  R  S  C  H  L  V  S  K  I  D  P  N  P  *  R  N  P  V  P  V  M  H  S  A  Y  T  F  S  S  T  C  T  H  H  F  K  V  C  F  C  T  S  K  F  S  S  G  I  G  K  F  V  V  R  E  S  K  Q  G  E  N  F  T  V  W  N  C  S  V  F  D  *  R  V  E  K  W  I  P  R  I  T  G  T  C  C  </first_frame>
            <second_frame>  K  M  Y  T  F  A  H  L  L  N  R  L  K  V  E  F  L  K  P  F  V  F  I  H  I  *  T  S  K  I  E  S  *  N  F  F  F  F  F  F  I  E  M  G  T  S  K  Q  R  W  R  I  S  F  H  K  S  P  S  K  Q  P  P  I  P  I  E  F  V  C  P  I  S  G  S  L  M  A  D  P  V  I  V  S  S  G  H  T  F  E  R  H  C  V  H  A  C  K  S  L  S  F  T  P  V  L  P  D  G  S  V  P  D  F  S  T  V  I  P  N  L  A  L  K  S  T  I  L  N  F  C  R  S  S  F  L  D  P  P  K  P  I  N  F  L  T  A  E  N  L  V  F  T  L  K  A  T  R  K  P  Q  D  A  T  R  F  N  G  V  R  V  M  Q  T  E  T  E  L  N  R  V  P  S  H  I  S  M  S  S  E  E  S  V  T  P  R  S  G  P  T  Y  Y  S  S  S  S  A  S  D  F  E  T  L  N  P  N  S  F  E  E  D  E  L  L  V  K  L  K  S  S  Q  I  S  E  Q  E  E  A  V  I  S  F  R  K  L  T  R  T  R  E  E  T  R  F  Q  L  C  T  P  R  I  L  S  A  L  R  V  L  I  T  S  R  Y  V  S  V  Q  V  N  S  V  A  A  L  V  N  L  S  L  E  N  R  N  K  V  K  I  L  R  S  G  I  V  P  S  L  I  D  V  L  K  S  G  F  Q  E  S  Q  E  H  V  A </second_frame>
            <third_frame>   R  C  T  L  L  L  I  S  S  T  G  S  K  L  N  F  *  N  L  L  F  S  F  I  F  E  P  Q  R  L  N  L  E  T  S  F  F  F  S  S  L  K  W  V  L  A  S  K  D  G  E  F  H  F  T  S  L  H  Q  N  N  L  L  F  L  *  N  L  S  V  L  F  L  V  L  S  W  L  T  L  *  S  F  L  Q  A  I  L  L  S  V  I  V  F  M  P  A  N  H  F  L  L  P  L  F  F  L  M  A  L  F  L  I  S  L  L  *  S  L  T  *  L  S  S  L  Q  S  S  I  F  A  V  L  L  F  L  T  H  Q  N  P  S  I  F  S  Q  L  K  I  S  F  S  H  *  R  P  P  E  N  P  K  M  L  Q  D  L  M  A  S  G  L  C  R  R  K  L  N  *  T  G  Y  R  V  T  Y  Q  *  V  Q  R  N  L  *  L  L  E  V  D  P  L  I  T  L  R  R  Q  P  L  T  L  K  P  *  T  Q  I  P  L  K  K  M  N  Y  L  *  N  *  R  V  P  K  Y  L  N  K  K  K  L  S  S  R  F  E  N  *  P  E  P  V  K  K  P  G  S  S  Y  A  L  R  V  Y  F  Q  L  Y  V  Y  S  S  L  Q  G  M  F  L  Y  K  *  I  Q  *  R  H  W  *  I  C  R  *  R  I  E  T  R  *  K  F  Y  G  L  E  L  F  R  L  *  L  T  C  *  K  V  D  S  K  N  H  R  N  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106101" stop="106967"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFFFFFIEMGTSKQRWRISFHKSPSKQPPIPIEFVCPISGSLMADPVIVSSGHTFERHCVHACKSLSFTPVLPDGSVPDFSTVIPNLALKSTILNFCRSSFLDPPKPINFLTAENLVFTLKATRKPQDATRFNGVRVMQTETELNRVPSHISMSSEESVTPRSGPTYYSSSSASDFETLNPNSFEEDELLVKLKSSQISEQEEAVISFRKLTRTREETRFQLCTPRILSALRVLITSRYVSVQVNSVAALVNLSLENRNKVKILRSGIVPSLIDVLKSGFQESQEHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="106974" PGL_stop="107824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106974" e_stop="107824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="106974" e_stop="107824" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106974" stop="107679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107028" stop="107824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTG</gDNA_template>
            <first_frame> L  F  S  L  A  L  D  D  Q  N  K  T  A  I  G  V  L  G  A  L  P  P  L  L  H  A  L  R  S  E  S  E  R  T  R  H  D  S  A  L  A  L  Y  H  L  T  L  V  Q  S  N  R  A  K  L  V  K  L  G  A  V  Q  A  L  L  G  M  V  K  T  G  H  M  M  G  R  I  L  L  I  L  C  N  L  A  A  S  S  E  G  R  A  A  M  L  D  G  G  A  V  E  C  F  V  C  M  L  R  K  G  E  F  E  S  E  S  T  R  E  N  C  L  A  A  L  Y  G  L  S  H  G  G  L  R  F  K  G  L  A  K  E  A  A  A  E  E  L  L  I  Q  V  E  E  M  G  S  E  R  A  K  D  K  V  R  K  I  L  E  V  L  R  Q  K  D  E  E  E  E  V  D  W  E  K  L  L  N  S  D  D  D  I  S  Q  A  R  I  S  S  S  *  L  L  F  V  S  V  S  S  L  Y  A  I  S  F  L  F  L  R  N  G  L  *  L  G  T  V  F  S  L  H  S  F  G  *  H  D  F  G  F  G  F  A  R  R  V  F  *  G  H  V  T  V  D  M  V  N  N  V  G  G  V  K  K  D  S  E  Q  C  V  L  V  F  G  E  K  R  L  S  L  T  *  T  H   </first_frame>
            <second_frame>  F  S  V  *  R  *  M  I  R  T  K  L  Q  L  G  Y  *  E  L  C  L  H  F  F  M  P  F  D  L  N  R  N  E  L  G  M  I  R  L  W  L  Y  I  T  S  L  *  F  R  V  T  G  L  N  W  *  N  S  G  R  F  R  H  Y  *  A  W  L  K  R  V  I  *  W  V  G  F  C  *  Y  F  V  T  W  L  R  A  L  K  G  E  Q  Q  C  L  M  G  V  Q  W  S  V  L  Y  V  C  *  E  R  E  S  L  N  R  S  R  L  V  R  I  V  L  L  H  Y  M  D  L  V  M  V  A  L  G  L  K  G  W  Q  K  R  L  L  R  R  S  C  *  Y  K  L  R  K  W  E  V  K  G  P  R  I  K  L  E  R  Y  W  R  F  *  G  R  R  M  K  R  R  K  L  I  G  R  S  C  L  I  R  M  M  I  S  V  K  H  G  *  V  L  H  S  S  C  L  F  L  F  L  H  C  M  L  F  H  S  F  F  *  E  M  A  C  N  *  A  R  F  S  L  C  I  A  S  D  S  M  I  L  V  L  V  L  L  V  V  S  S  E  V  M  *  Q  L  T  W  *  I  M  L  E  V  *  R  K  I  L  N  S  V  F  *  F  L  E  K  R  G  C  L  *  H  E  L  I  </second_frame>
            <third_frame>   F  Q  F  S  V  R  *  S  E  Q  N  C  N  W  G  I  R  S  S  A  S  T  S  S  C  P  S  I  *  I  G  T  N  *  A  *  F  G  S  G  S  I  S  P  H  F  S  S  E  *  Q  G  *  I  G  E  T  R  G  G  S  G  I  T  R  H  G  *  N  G  S  Y  D  G  S  D  S  V  D  T  L  *  P  G  C  E  L  *  R  E  S  S  N  A  *  W  G  C  S  G  V  F  C  M  Y  V  E  K  G  R  V  *  I  G  V  D  S  *  E  L  S  C  C  I  I  W  T  *  S  W  W  P  *  V  *  R  V  G  K  R  G  C  C  G  G  A  V  D  T  S  *  G  N  G  K  *  K  G  Q  G  *  S  *  K  D  I  G  G  F  E  A  E  G  *  R  G  G  S  *  L  G  E  V  A  *  F  G  *  *  Y  Q  S  S  T  D  K  F  F  I  A  L  V  C  F  C  F  F  T  V  C  Y  F  I  P  F  S  E  K  W  L  V  I  R  H  G  F  L  F  A  *  L  R  I  A  *  F  W  F  W  F  C  S  S  C  L  L  R  S  C  D  S  *  H  G  K  *  C  W  R  C  K  E  R  F  *  T  V  C  F  S  F  W  R  K  E  A  V  F  N  M  N  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106974" stop="107573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLALDDQNKTAIGVLGALPPLLHALRSESERTRHDSALALYHLTLVQSNRAKLVKLGAVQALLGMVKTGHMMGRILLILCNLAASSEGRAAMLDGGAVECFVCMLRKGEFESESTRENCLAALYGLSHGGLRFKGLAKEAAAEELLIQVEEMGSERAKDKVRKILEVLRQKDEEEEVDWEKLLNSDDDISQARISSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="108131" PGL_stop="107522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108131" e_stop="107522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="108131" e_stop="107522" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108131" stop="107522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</gDNA_template>
            <first_frame> R  L  C  Q  W  Y  T  L  F  I  L  A  F  T  V  *  A  S  R  C  S  K  M  K  N  N  S  G  V  H  C  I  C  S  A  A  M  F  I  A  M  Q  T  L  K  K  H  E  N  N  N  S  L  T  T  S  A  V  A  A  I  N  Q  L  Q  H  K  Y  Q  I  T  R  Q  R  L  V  E  A  T  N  S  A  *  N  K  P  Q  A  H  K  K  V  K  I  A  L  L  E  E  Y  *  E  T  M  S  S  C  *  R  Q  P  L  F  S  K  N  *  N  T  L  F  R  I  F  L  Y  T  S  N  I  I  Y  H  V  N  C  H  M  T  S  E  D  T  T  S  K  T  K  T  K  I  M  L  S  E  A  M  Q  R  E  N  R  A  *  L  Q  A  I  S  Q  K  K  E  *  N  S  I  Q  *  R  N  R  N  K  Q  E  L  *  R  T  Y  P  C  L  T  D  I  I  I  R  I  K  Q  </first_frame>
            <second_frame>  D  C  V  N  G  T  L  S  S  F  L  L  S  L  F  E  H  Q  D  A  Q  K  *  K  T  T  L  E  F  I  A  F  A  L  Q  Q  C  L  L  Q  C  R  P  *  R  N  M  R  I  T  I  L  *  Q  L  P  Q  L  Q  Q  S  I  N  S  S  I  N  T  K  L  L  D  S  G  L  W  K  P  R  T  V  H  R  I  S  L  R  H  T  R  K  *  K  *  H  C  L  K  S  I  R  R  Q  *  V  H  V  K  D  S  L  F  S  P  K  T  K  T  H  C  S  E  S  F  F  T  P  P  T  L  F  T  M  S  T  V  T  *  P  Q  K  T  R  R  A  K  P  K  P  K  S  C  Y  P  K  L  C  K  E  K  T  V  P  N  Y  K  P  F  L  R  K  R  N  E  I  A  Y  S  E  E  T  E  T  N  K  S  Y  E  E  L  I  R  A  *  L  I  S  S  S  E  L  S  N </second_frame>
            <third_frame>   I  V  S  M  V  H  S  L  H  S  C  F  H  C  L  S  I  K  M  L  K  N  E  K  Q  L  W  S  S  L  H  L  L  C  S  N  V  Y  C  N  A  D  L  K  E  T  *  E  *  Q  F  S  N  N  F  R  S  C  S  N  Q  S  T  P  A  *  I  P  N  Y  *  T  A  A  C  G  S  H  E  Q  C  I  E  *  A  S  G  T  Q  E  S  E  N  S  I  A  *  R  V  L  G  D  N  E  F  M  L  K  T  A  S  F  L  Q  K  L  K  H  T  V  Q  N  L  S  L  H  L  Q  H  Y  L  P  C  Q  L  S  H  D  L  R  R  H  D  E  Q  N  Q  N  Q  N  H  A  I  R  S  Y  A  K  R  K  P  C  L  I  T  S  H  F  S  E  K  G  M  K  *  H  T  V  K  K  Q  K  Q  T  R  A  M  K  N  L  S  V  L  D  *  Y  H  H  P  N  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107838" stop="107605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLGDNEFMLKTASFLQKLKHTVQNLSLHLQHYLPCQLSHDLRRHDEQNQNQNHAIRSYAKRKPCLITSHFSEKGMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108083" stop="107883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRCSKMKNNSGVHCICSAAMFIAMQTLKKHENNNSLTTSAVAAINQLQHKYQITRQRLVEATNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="110507" PGL_stop="109084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110507" e_stop="109084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="110507" e_stop="109084" e_length="1424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110507" stop="110164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110446" stop="109632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110444" stop="109572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110418" stop="109656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110409" stop="109933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="109873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110373" stop="109735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110364" stop="109565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110343" stop="109663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110189" stop="109583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110052" stop="109583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109858" stop="109218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109857" stop="109213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109665" stop="109239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109421" stop="109084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109421" stop="109084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</gDNA_template>
            <first_frame> L  N  K  K  *  K  H  I  S  L  N  E  E  K  *  E  I  *  R  P  H  *  S  P  P  A  I  S  H  P  P  F  T  Y  F  P  L  L  F  L  A  I  F  F  Y  *  L  S  L  L  K  H  *  A  E  K  Q  S  K  W  V  *  L  F  C  F  F  F  A  S  L  L  S  *  L  L  L  Y  H  S  T  I  R  R  *  I  L  L  I  T  G  D  H  V  Q  D  L  N  K  L  C  K  K  P  L  Q  T  N  R  S  L  H  L  L  P  P  P  L  P  S  V  S  S  S  T  T  A  S  S  A  A  A  T  R  P  S  S  S  P  P  L  L  S  T  K  L  N  V  T  Q  K  S  T  Y  H  S  P  A  M  G  S  M  *  S  Y  A  P  K  R  R  L  N  L  L  A  P  A  L  S  L  A  P  T  F  S  P  S  L  P  G  I  S  L  F  K  P  E  A  R  F  I  Q  L  I  W  A  V  K  I  L  L  L  L  K  L  R  W  L  K  E  I  C  P  D  P  Q  C  R  W  I  K  S  Y  K  F  S  G  Q  E  G  F  R  Y  R  K  W  *  R  Y  P  V  L  T  Q  L  G  F  P  I  V  K  S  S  A  Q  I  F  T  I  T  T  K  L  P  N  M  I  L  L  T  I  P  D  L  L  K  L  *  E  M  L  V  I  I  S  R  K  I  Q  H  C  P  F  S  T  T  S  *  L  R  I  S  L  T  T  C  I  T  R  T  Y  P  R  V  W  V  C  C  L  R  T  G  V  C  F  Q  I  R  G  Q  E  F  M  L  K  S  I  L  E  I  K  M  H  S  L  R  R  L  L  Q  Q  C  R  S  *  V  I  M  V  L  K  L  G  E  V  V  R  S  D  T  D  V  M  L  S  T  I  K  L  F  E  G  Y  *  L  C  Y  C  T  F  E  F  F  V  E  F  N  H  S  Q  D  E  S  K  T  Y  N  M  Y  T  M  F  F  T  I  I  F  I  K  I  T  R  L  C  F  S  S  A  F  R  T  T  T  T  T  T  T  C  D  *  C  V  L  R  C  R  *  E  A  V  C  S  S  N  L  I  Q  *  E  M  K  P  *  I   </first_frame>
            <second_frame>  *  I  K  N  K  N  I  Y  H  *  M  K  R  S  E  K  Y  E  D  P  I  E  A  L  Q  L  F  P  I  P  H  L  P  I  S  L  S  F  F  *  P  F  F  S  I  N  F  P  F  S  N  T  E  L  K  N  R  A  N  G  F  N  S  S  A  F  S  L  L  L  C  Y  L  N  S  F  F  I  T  A  P  F  A  A  K  Y  C  L  L  P  E  I  M  S  K  I  *  T  N  Y  A  R  N  H  Y  K  Q  T  D  H  F  T  Y  Y  R  R  R  Y  P  P  S  L  L  P  R  L  L  R  R  R  L  R  R  V  H  P  R  L  L  H  S  F  Q  Q  S  *  T  *  R  R  N  Q  P  I  T  P  R  R  W  V  R  C  S  R  T  R  Q  N  G  A  *  T  C  L  P  R  R  C  L  L  L  R  H  S  R  R  R  C  P  E  S  R  C  S  N  R  R  P  V  L  S  S  *  F  G  P  *  R  F  F  Y  F  *  S  F  V  G  *  R  K  S  A  P  T  H  N  V  D  G  S  N  H  T  N  F  R  V  K  R  V  F  G  T  G  N  G  S  V  I  R  C  S  H  N  W  V  F  P  L  *  R  V  Q  L  K  S  L  Q  L  Q  Q  N  F  P  I  *  S  F  L  Q  S  Q  I  C  S  S  F  E  K  C  L  *  *  F  P  E  R  S  N  I  V  R  F  Q  R  H  H  D  S  E  *  V  *  Q  H  V  L  P  E  L  T  Q  G  F  G  S  V  V  F  G  P  G  S  V  F  R  S  E  D  K  S  S  C  *  R  V  Y  *  R  S  K  C  I  L  *  G  V  C  F  S  N  A  E  A  K  *  S  W  C  *  N  W  E  K  W  *  D  Q  T  Q  M  *  C  F  Q  Q  L  N  Y  L  R  G  I  D  Y  V  T  V  R  S  N  F  L  L  N  L  I  T  H  K  T  K  V  K  L  I  I  C  I  Q  C  F  L  L  S  F  L  L  R  L  Q  G  S  A  S  V  L  L  L  E  Q  L  L  L  L  L  L  V  I  S  V  C  *  D  A  G  K  R  L  F  V  R  R  I  *  F  N  K  K  *  N  R  K  *  </second_frame>
            <third_frame>   K  *  K  I  K  T  Y  I  I  E  *  R  E  V  R  N  M  K  T  P  L  K  P  S  S  Y  F  P  S  P  I  Y  L  F  P  S  P  F  F  S  H  F  F  L  L  T  F  P  S  Q  T  L  S  *  K  T  E  Q  M  G  L  T  L  L  L  F  L  C  F  S  V  I  L  T  P  S  L  S  Q  H  H  S  P  L  N  T  A  Y  Y  R  R  S  C  P  R  F  E  Q  I  M  Q  E  T  T  T  N  K  Q  I  T  S  P  T  T  A  A  A  T  L  R  L  F  F  H  D  C  F  V  G  G  C  D  A  S  I  L  V  S  S  T  P  F  N  K  A  E  R  D  A  E  I  N  L  S  L  P  G  D  G  F  D  V  V  V  R  A  K  T  A  L  E  L  A  C  P  G  V  V  S  C  S  D  I  L  A  V  A  A  R  N  L  V  V  Q  T  G  G  P  F  Y  P  V  N  L  G  R  K  D  S  F  T  S  K  A  S  L  V  E  G  N  L  P  R  P  T  M  S  M  D  Q  I  I  Q  I  F  G  S  R  G  F  S  V  P  E  M  V  A  L  S  G  A  H  T  I  G  F  S  H  C  K  E  F  S  S  N  L  Y  N  Y  N  K  T  S  Q  Y  D  P  S  Y  N  P  R  F  A  Q  A  L  R  N  A  C  N  N  F  Q  K  D  P  T  L  S  V  F  N  D  I  M  T  P  N  K  F  D  N  M  Y  Y  Q  N  L  P  K  G  L  G  L  L  S  S  D  R  G  L  F  S  D  P  R  T  R  V  H  V  E  E  Y  I  R  D  Q  N  A  F  F  K  A  F  A  S  A  M  Q  K  L  S  D  H  G  V  K  I  G  R  S  G  E  I  R  H  R  C  D  A  F  N  N  *  T  I  *  G  V  L  I  M  L  L  Y  V  R  I  F  C  *  I  *  S  L  T  R  R  K  *  N  L  *  Y  V  Y  N  V  F  Y  Y  H  F  Y  *  D  Y  K  A  L  L  Q  F  C  F  *  N  N  Y  Y  Y  Y  Y  L  *  L  V  C  V  E  M  Q  V  R  G  C  L  F  V  E  F  D  S  I  R  N  E  T  V  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110343" stop="109345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEQMGLTLLLFLCFSVILTPSLSQHHSPLNTAYYRRSCPRFEQIMQETTTNKQITSPTTAAATLRLFFHDCFVGGCDASILVSSTPFNKAERDAEINLSLPGDGFDVVVRAKTALELACPGVVSCSDILAVAARNLVVQTGGPFYPVNLGRKDSFTSKASLVEGNLPRPTMSMDQIIQIFGSRGFSVPEMVALSGAHTIGFSHCKEFSSNLYNYNKTSQYDPSYNPRFAQALRNACNNFQKDPTLSVFNDIMTPNKFDNMYYQNLPKGLGLLSSDRGLFSDPRTRVHVEEYIRDQNAFFKAFASAMQKLSDHGVKIGRSGEIRHRCDAFNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109360" stop="109148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFQQLNYLRGIDYVTVRSNFLLNLITHKTKVKLIICIQCFLLSFLLRLQGSASVLLLEQLLLLLLVISVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="121934" PGL_stop="118725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121934" e_stop="121857"/>
            <exon e_start="120846" e_stop="120744"/>
            <exon e_start="120652" e_stop="120484"/>
            <exon e_start="120302" e_stop="120204"/>
            <exon e_start="120105" e_stop="120047"/>
            <exon e_start="119137" e_stop="119032"/>
            <exon e_start="118791" e_stop="118725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.969" e_score="0.942"/>
          <exon-intron don_prob="0.465" acc_prob="0.419" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121934" e_stop="121857" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="121856" i_stop="120847" i_length="1010"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="120846" e_stop="120744" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.969">
            <gDNA_intron_boundary i_start="120743" i_stop="120653" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120652" e_stop="120484" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.465" acc_prob="0.419">
            <gDNA_intron_boundary i_start="120483" i_stop="120303" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120302" e_stop="120204" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.913">
            <gDNA_intron_boundary i_start="120203" i_stop="120106" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120105" e_stop="120047" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120046" i_stop="119138" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="119137" e_stop="119032" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="119031" i_stop="118792" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118791" e_stop="118725" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121934" stop="121857"/>
              <exon start="120846" stop="120744"/>
              <exon start="120652" stop="120484"/>
              <exon start="120302" stop="120204"/>
              <exon start="120105" stop="120047"/>
              <exon start="119137" stop="119032"/>
              <exon start="118791" stop="118725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG : GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG : TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT : ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT : CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT : ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG : GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</gDNA_template>
            <first_frame> F  G  F  Q  L  F  I  E  Q  R  S  R  N  Y  *  S  S  T  N  C  *  I  G  P  *  L  :  A  S  R  *  Y  S  H  S  F  Q  L  L  V  S  Y  P  G  *  L  P  F  S  L  A  L  H  L  P  S  C  F  Y  Q  S   : V  M  K  Q  S  S  M  V  L  S  V  L  H  L  *  H  G  Y  W  R  K  M  L  I  S  I  *  A  S  S  D  H  Q  L  Q  S  N  P  W  R  M  I  I  G  V  W  S  Y  P  I  *  G  S  H  *  L  L :   W  S  F  S  I  L  H  S  L  E  L  V  I  L  Q  V  L  Q  V  L  R  S  P  P  C  I  D  S  L  Q  F  S  V :   L  F  *  W  R  H  Y  L  F  S  S  C  *  Y  H  S  Y  L  S   : Y  V  R  S  V  Q  S  Q  N  W  C  K  F  H  C  W  D  A  I  F  W  *  S  C  A  L  M  *  *  Q  S  I  S  S  S  W :   S  E  I  K  E  A  G  W  K  L  A  T  A  L  A  I  S  E  L  *  V  L </first_frame>
            <second_frame>  L  A  F  N  Y  S  *  N  R  E  A  G  I  I  S  P  P  P  T  V  E  L  V  H  S  W :   L  L  D  D  T  P  T  L  F  S  Y  W  S  L  I  Q  A  D  F  H  F  P  W  R  C  T  S  L  P  A  S  I  N  R  :  L  *  S  S  L  L  W  C  S  Q  S  C  T  Y  S  M  D  T  G  G  K  C  L  S  P  Y  K  Q  V  Q  I  I  S  S  S  Q  I  H  G  G  *  *  *  V  S  G  V  I  R  Y  E  D  P  I  N  F   : Y  G  L  F  Q  Y  C  I  L  W  N  W  *  F  C  K  Y  C  K  F  *  D  L  L  R  V  S  I  H  Y  N  F  Q   : S  F  S  D  G  G  I  T  Y  F  Q  A  V  D  T  I  H  T  C  H  :  M  C  V  Q  C  N  H  K  I  G  A  S  S  I  V  G  M  L  F  S  G  D  L  V  L  *  C  N  D  N  P  F  L  L  P   : G  P  K  *  R  K  L  D  G  N  W  Q  Q  H  *  P  F  R  N  Y  E  C   </second_frame>
            <third_frame>   W  L  S  T  I  H  R  T  E  K  Q  E  L  L  V  L  H  Q  L  L  N  W  S  I  A   : G  F  S  M  I  L  P  L  F  S  A  T  G  L  L  S  R  L  T  S  I  F  L  G  V  A  P  P  F  L  L  L  S  I  G :   Y  E  A  V  F  Y  G  A  L  S  L  A  L  I  A  W  I  L  A  E  N  A  Y  L  H  I  S  K  F  R  S  S  A  P  V  K  S  M  E  D  D  N  R  C  L  E  L  S  D  M  R  I  P  L  T  F  :  M  V  F  F  N  I  A  F  F  G  T  G  N  F  A  S  I  A  S  F  E  I  S  S  V  Y  R  F  I  T  I  F  S  :  P  F  L  M  A  A  L  L  I  F  K  L  L  I  P  F  I  L  V  I :   C  A  F  S  A  I  T  K  L  V  Q  V  P  L  L  G  C  Y  F  L  V  I  L  C  S  D  V  M  T  I  H  F  F  F  L  :  V  R  N  K  G  S  W  M  E  I  G  N  S  I  S  H  F  G  I  M  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121932" stop="121857"/>
                    <exon start="120846" stop="120744"/>
                    <exon start="120652" stop="120484"/>
                    <exon start="120302" stop="120204"/>
                    <exon start="120105" stop="120047"/>
                    <exon start="119137" stop="119032"/>
                    <exon start="118791" stop="118726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLSTIHRTEKQELLVLHQLLNWSIAGFSMILPLFSATGLLSRLTSIFLGVAPPFLLLSIGYEAVFYGALSLALIAWILAENAYLHISKFRSSAPVKSMEDDNRCLELSDMRIPLTFMVFFNIAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLLIPFILVICAFSAITKLVQVPLLGCYFLVILCSDVMTIHFFFLVRNKGSWMEIGNSISHFGIMSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="125241" PGL_stop="122772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125241" e_stop="125217"/>
            <exon e_start="125112" e_stop="125038"/>
            <exon e_start="124886" e_stop="124820"/>
            <exon e_start="124438" e_stop="124116"/>
            <exon e_start="122807" e_stop="122772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125241" e_stop="125217" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.966">
            <gDNA_intron_boundary i_start="125216" i_stop="125113" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="125112" e_stop="125038" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="125037" i_stop="124887" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124820" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.854">
            <gDNA_intron_boundary i_start="124819" i_stop="124439" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="124438" e_stop="124116" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124115" i_stop="122808" i_length="1308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122807" e_stop="122772" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125241" stop="125217"/>
              <exon start="125112" stop="125038"/>
              <exon start="124886" stop="124820"/>
              <exon start="124438" stop="124116"/>
              <exon start="122807" stop="122772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCTGACATAGCACCACTGATG : TCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG : GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC : AGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAG : ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</gDNA_template>
            <first_frame> S  S  *  H  S  T  T  D   : V  H  S  S  W  S  A  M  S  Y  Q  L  S  W  Q  S  A  S  S  V  H  E  S  E  Q   : G  R  R  S  *  S  C  A  G  Q  Y  E  A  N  P  Q  S  V  P  S  K  V  T :   V  K  A  V  D  L  I  I  H  Q  A  F  Q  A  L  G  *  L  F  I  T  I  A  *  N  *  A  T  D  F  S  Q  R  V  *  N  C  S  E  I  I  *  T  S  *  E  L  G  T  S  R  T  S  L  F  S  D  I  *  L  A  D  A  D  D  C  N  H  S  W  L  C  W  L  D  D  L  C  H  T  P  Y  L  A  I  L  Y  I  P  T  C  K  Y  F  *  Q  G  P  S  A  *  S  K  K  Y  S  *   : D  T  S  F  R  R  V  V  D  G  S  S  </first_frame>
            <second_frame>  Q  A  D  I  A  P  L  M  :  S  T  L  L  G  L  P  C  P  I  N  S  V  G  N  L  P  L  Q  Y  M  N  L  N  K  :  A  E  E  V  E  A  V  L  A  N  T  K  Q  I  L  N  Q  F  L  R  K  S   : Q  L  K  Q  S  T  S  L  Y  I  K  P  F  K  P  L  A  S  Y  S  S  L  L  R  E  I  E  Q  L  I  S  L  K  E  Y  E  T  A  V  K  L  S  E  H  L  R  S  L  A  L  Q  G  L  H  Y  F  Q  T  Y  D  W  L  M  L  M  T  V  I  T  L  G  Y  V  G  W  M  I  Y  V  I  L  H  I  L  Q  S  Y  T  S  L  P  A  N  I  F  S  K  D  Q  V  P  N  P  R  S  T  V  K  :  I  H  L  L  G  G  L  L  M  G  V  A </second_frame>
            <third_frame>   K  L  T  *  H  H  *  C :   P  L  F  L  V  C  H  V  L  S  T  Q  L  A  I  C  L  F  S  T  *  I  *  T  R :   Q  K  K  L  K  L  C  W  P  I  R  S  K  S  S  I  S  S  F  E  S  H  :  S  *  S  S  R  P  H  Y  T  S  S  L  S  S  P  W  L  V  I  H  H  Y  C  V  K  L  S  N  *  F  L  S  K  S  M  K  L  Q  *  N  Y  L  N  I  L  G  A  W  H  F  K  D  F  T  I  F  R  H  M  I  G  *  C  *  *  L  *  S  L  L  A  M  L  V  G  *  S  M  S  Y  S  I  S  C  N  L  I  H  P  Y  L  Q  I  F  L  A  R  T  K  C  L  I  Q  E  V  Q  L  R :   Y  I  F  *  E  G  C  *  W  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125240" stop="125217"/>
                    <exon start="125112" stop="125038"/>
                    <exon start="124886" stop="124820"/>
                    <exon start="124438" stop="124116"/>
                    <exon start="122807" stop="122772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QADIAPLMSTLLGLPCPINSVGNLPLQYMNLNKAEEVEAVLANTKQILNQFLRKSQLKQSTSLYIKPFKPLASYSSLLREIEQLISLKEYETAVKLSEHLRSLALQGLHYFQTYDWLMLMTVITLGYVGWMIYVILHILQSYTSLPANIFSKDQVPNPRSTVKIHLLGGLLMGVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="139310" PGL_stop="128579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131695" e_stop="131298"/>
            <exon e_start="130599" e_stop="130546"/>
            <exon e_start="129989" e_stop="129930"/>
            <exon e_start="128972" e_stop="128579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131695" e_stop="131298" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130599" e_stop="130546" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="130545" i_stop="129990" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129989" e_stop="129930" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="129929" i_stop="128973" i_length="957"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="128972" e_stop="128579" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131695" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131695" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131694" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131694" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131694" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131693" stop="131298"/>
              <exon start="130599" stop="130555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131688" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131688" stop="131298"/>
              <exon start="130599" stop="130550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131685" stop="131333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131683" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131678" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131633" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131377" stop="131298"/>
              <exon start="130599" stop="130546"/>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129989" stop="129930"/>
              <exon start="128972" stop="128579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG : GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG : TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</gDNA_template>
            <first_frame> V  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R :   I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  S :   *  Q  S  K  R  Q  Y  K  L  Q  G  W  L  Q  V  W  L  K  Q  Y  K  V  Q  A  S  S  C  K  H  *  I  *  A  F  R  M  K  K  I  L  A  K  W  W  L  V  E  F  R  D  M  I  G  *  Y  L  S  R  A  S  *  E  I  S  V  Y  L  Y  A  S  S  F  S  K  P  I  S  V  T  F  L  C  Y  A  V  L  *  S  F  S  S  L  A  Y  V  P  F  R  N  L  *  K  Y  L  *  I  T  N  D  Q  Q  N  H  F  V  Y  L  L  K  Q  V  V  Y  D  W  K  R  Y  F  L  * </first_frame>
            <second_frame>  F  L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R   : G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R   : V  N  K  A  N  D  N  T  S  Y  R  G  G  F  K  F  G  *  N  N  T  R  F  R  L  Q  V  A  N  I  E  S  E  L  S  G  *  R  R  Y  *  L  S  G  G  L  *  N  S  E  T  *  *  A  D  I  F  H  G  H  P  E  R  S  L  F  I  C  M  P  V  V  S  V  S  L  Y  L  *  H  F  C  V  M  Q  F  F  D  L  F  L  P  *  H  M  F  L  S  A  T  Y  K  N  T  C  E  L  L  M  I  S  R  I  I  L  F  T  C  *  N  K  W  Y  T  I  G  K  G  T  S  Y   </second_frame>
            <third_frame>   S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  :  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  :  L  T  K  Q  T  T  I  Q  A  T  G  V  A  S  S  L  V  E  T  I  Q  G  S  G  F  K  L  Q  T  L  N  L  S  F  Q  D  E  E  D  I  S  *  V  V  A  C  R  I  Q  R  H  D  R  L  I  S  F  T  G  I  L  R  D  L  C  L  F  V  C  Q  *  F  Q  *  A  Y  I  C  N  I  F  V  L  C  S  S  L  I  F  F  F  L  S  I  C  S  F  P  Q  L  I  K  I  L  V  N  Y  *  *  S  A  E  S  F  C  L  L  V  E  T  S  G  I  R  L  E  K  V  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131678" stop="131298"/>
                    <exon start="130599" stop="130546"/>
                    <exon start="129989" stop="129930"/>
                    <exon start="128972" stop="128847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEDIEGITGLKIQVVEGIASVELTKQTTIQATGVASSLVETIQGSGFKLQTLNLSFQDEEDIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="131693" e_stop="131298"/>
            <exon e_start="130599" e_stop="129623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131693" e_stop="131298" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131297" i_stop="130600" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="130599" e_stop="129623" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131693" stop="131298"/>
              <exon start="130599" stop="130555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131688" stop="131298"/>
              <exon start="130599" stop="130550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131685" stop="131333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130592" stop="129877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130163" stop="129623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130163" stop="129740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</gDNA_template>
            <first_frame> S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E  G  K  I   </first_frame>
            <second_frame>  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  E  K  *  </second_frame>
            <third_frame>   L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131678" stop="131298"/>
                    <exon start="130599" stop="130537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="133065" e_stop="132954"/>
            <exon e_start="132524" e_stop="132473"/>
            <exon e_start="132405" e_stop="132130"/>
            <exon e_start="131908" e_stop="131881"/>
            <exon e_start="130599" e_stop="129623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="0.989"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="0.786"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="133065" e_stop="132954" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132524" e_stop="132473" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132405" e_stop="132130" e_length="276"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132129" i_stop="131909" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="0.786">
            <gDNA_exon_boundary e_start="131908" e_stop="131881" e_length="28"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="131880" i_stop="130600" i_length="1281"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="130599" e_stop="129623" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133065" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132130"/>
              <exon start="131908" stop="131881"/>
              <exon start="130599" stop="130586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578376" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133041" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130592" stop="129877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130163" stop="129623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130163" stop="129740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACT : CTCAAAAAAAAAATAAAAAAACTACATT : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</gDNA_template>
            <first_frame> T  D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L :   S  K  K  K  *  K  N  Y  I  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E  G  K  I   </first_frame>
            <second_frame>  Q  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H   : S  Q  K  K  N  K  K  T  T  L :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  E  K  *  </second_frame>
            <third_frame>   R  L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  :  L  K  K  K  I  K  K  L  H   : C  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133064" stop="132954"/>
                    <exon start="132524" stop="132473"/>
                    <exon start="132405" stop="132365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="139303" e_stop="139265"/>
            <exon e_start="138974" e_stop="138825"/>
            <exon e_start="138603" e_stop="138445"/>
            <exon e_start="136628" e_stop="136569"/>
            <exon e_start="135972" e_stop="135874"/>
            <exon e_start="134570" e_stop="134463"/>
            <exon e_start="134383" e_stop="134240"/>
            <exon e_start="133061" e_stop="132954"/>
            <exon e_start="132524" e_stop="132473"/>
            <exon e_start="132405" e_stop="132132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139303" e_stop="139265" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138974" e_stop="138825" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138603" e_stop="138445" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="136628" e_stop="136569" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135972" e_stop="135874" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="135873" i_stop="134571" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="134570" e_stop="134463" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="134383" e_stop="134240" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="133061" e_stop="132954" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="132524" e_stop="132473" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="132405" e_stop="132132" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139303" stop="139265"/>
              <exon start="138974" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134570" stop="134463"/>
              <exon start="134383" stop="134240"/>
              <exon start="133061" stop="132955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139298" stop="139265"/>
              <exon start="138974" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134570" stop="134463"/>
              <exon start="134383" stop="134337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139297" stop="139265"/>
              <exon start="138974" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134570" stop="134478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134484" stop="134463"/>
              <exon start="134383" stop="134240"/>
              <exon start="133061" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133041" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </first_frame>
            <second_frame>  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </second_frame>
            <third_frame>   S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138923" stop="138825"/>
                    <exon start="138603" stop="138445"/>
                    <exon start="136628" stop="136569"/>
                    <exon start="135972" stop="135874"/>
                    <exon start="134570" stop="134463"/>
                    <exon start="134383" stop="134240"/>
                    <exon start="133061" stop="132954"/>
                    <exon start="132524" stop="132473"/>
                    <exon start="132405" stop="132365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="139310" e_stop="139265"/>
            <exon e_start="138974" e_stop="138825"/>
            <exon e_start="138603" e_stop="138445"/>
            <exon e_start="136628" e_stop="136569"/>
            <exon e_start="135972" e_stop="135874"/>
            <exon e_start="134555" e_stop="134463"/>
            <exon e_start="134383" e_stop="134240"/>
            <exon e_start="133061" e_stop="132954"/>
            <exon e_start="132524" e_stop="132473"/>
            <exon e_start="132405" e_stop="132132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139310" e_stop="139265" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139264" i_stop="138975" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138974" e_stop="138825" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="138824" i_stop="138604" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138603" e_stop="138445" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="138444" i_stop="136629" i_length="1816"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="136628" e_stop="136569" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136568" i_stop="135973" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135972" e_stop="135874" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.556">
            <gDNA_intron_boundary i_start="135873" i_stop="134556" i_length="1318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="134555" e_stop="134463" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134462" i_stop="134384" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="134383" e_stop="134240" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="134239" i_stop="133062" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="133061" e_stop="132954" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="132953" i_stop="132525" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="132524" e_stop="132473" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="132472" i_stop="132406" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="132405" e_stop="132132" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139310" stop="139265"/>
              <exon start="138974" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134555" stop="134463"/>
              <exon start="134383" stop="134240"/>
              <exon start="133061" stop="132954"/>
              <exon start="132524" stop="132495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139280" stop="139265"/>
              <exon start="138974" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134555" stop="134478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138959" stop="138825"/>
              <exon start="138603" stop="138445"/>
              <exon start="136628" stop="136569"/>
              <exon start="135972" stop="135874"/>
              <exon start="134555" stop="134463"/>
              <exon start="134383" stop="134240"/>
              <exon start="133061" stop="133017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134484" stop="134463"/>
              <exon start="134383" stop="134240"/>
              <exon start="133061" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133041" stop="132954"/>
              <exon start="132524" stop="132473"/>
              <exon start="132405" stop="132154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> L  F  P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : L  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </first_frame>
            <second_frame>  S  S  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </second_frame>
            <third_frame>   L  P  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001M12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138923" stop="138825"/>
                    <exon start="138603" stop="138445"/>
                    <exon start="136628" stop="136569"/>
                    <exon start="135972" stop="135874"/>
                    <exon start="134555" stop="134463"/>
                    <exon start="134383" stop="134240"/>
                    <exon start="133061" stop="132954"/>
                    <exon start="132524" stop="132473"/>
                    <exon start="132405" stop="132365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="135861" e_stop="135404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135861" e_stop="135404" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135861" stop="135404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</gDNA_template>
            <first_frame> F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I   </first_frame>
            <second_frame>  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  </second_frame>
            <third_frame>   L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001M12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 316 chains have been computed
$ 
$ memory statistics:
$ 773560 bytes spliced alignments in total
$ 239 spliced alignments have been stored
$ 3236 bytes was the average size of a spliced alignment
$ 42568 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1637 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 350 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:39:41
-->
