<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:19:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597338" ref_strand="+" ref_description="SGN-U597338 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346996|emb|CAO17378.1| (e_value=7e-23) unnamed; (*ATH) AT1G09420.1 (e_value=2e-22)  Symbol: G6PD4 | Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of th... ; (*SWP) sp|Q93ZW0|G6PD4_ARATH (e_value=2e-21) Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420; ">
      <seq>taggtcactttttctgaagagttaggcatgcagacctcagcaaggtagccaaggtttcagttcacttatgtaggttacaagtatttgatcctaatcctcgccctcttcatttttccccttcacgtaatagatatcctaaaggctatgggattttaggagatgttgtacacagccacatcttccagacagtggccttgcttgctatggagccgcctgtcacccttgatggtgaagatgttcgttatgagaaagttaaggttttgaaatcaattcgaaagttggaatcatctgatgtaattcttgggcatagtgaagctgattccggaagtaacttcaaagatatggaaaaccttatgcccacatattttggtgctgctttacacatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="6506" stop="7578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6806" g_stop="7056" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7057" i_stop="7141" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7142" g_stop="7278" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="388" r_length="137" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U597338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6806" e_stop="7056"/>
          <exon e_start="7142" e_stop="7278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTCACTTTTTCTGAAGAGTTAGGCATGCAGACCTCAGCAAGGTAGCCAAGGTTTCAGTTCACTTATGTAGGTTACAAGTATTTGATCCTAATCCTCGCCCTCTTCATTTTTCCCCTTCACGTAATAGATATCCTAAAGGCTATGGGATTTTAGGAGATGTTGTACACAGCCACATCTTCCAGACAGTGGCCTTGCTTGCTATGGAGCCGCCTGTCACCCTTGATGGTGAAGATGTTCGTTATGAGAAAGTATGTAACCTCTATTCCCTATATGTTACAAAATATTTTCAATATTTTTTGTTGAAATTGGTCATATAAATCATTTACTACTCAGGTTAAGGTTTTGAAATCAATTCGAAAGTTGGAATCATCTGATGTAATTCTTGGGCATAGTGAAGCTGATTCCGGAAGTAACTTCAAGGATATGGAAAACCTTATGCCCACATATTTTGGTGCTGCTTTACACATCGA</genome_strand>
        <mrna_strand>TAGGTCACTTTTTCTGAAGAGTTAGGCATGCAGACCTCAGCAAGGTAGCCAAGGTTTCAGTTCACTTATGTAGGTTACAAGTATTTGATCCTAATCCTCGCCCTCTTCATTTTTCCCCTTCACGTAATAGATATCCTAAAGGCTATGGGATTTTAGGAGATGTTGTACACAGCCACATCTTCCAGACAGTGGCCTTGCTTGCTATGGAGCCGCCTGTCACCCTTGATGGTGAAGATGTTCGTTATGAGAAA.....................................................................................GTTAAGGTTTTGAAATCAATTCGAAAGTTGGAATCATCTGATGTAATTCTTGGGCATAGTGAAGCTGATTCCGGAAGTAACTTCAAAGATATGGAAAACCTTATGCCCACATATTTTGGTGCTGCTTTACACATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599176" ref_strand="+" ref_description="SGN-U599176 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|18391021|ref|NP_563844.1| (e_value=1e-46) glucose-6-phosphate dehydrogenase -related [Arabidopsis thaliana]; (*ATH) AT1G09420.1 (e_value=1e-48)  Symbol: G6PD4 | Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of th... ; (*SWP) sp|Q93ZW0|G6PD4_ARATH (e_value=8e-48) Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420; ">
      <seq>gggagggcataagcaagatcttgtcactaatgagctgattctgcgtgatgtgcctgatgaggccatactcatcagaatcaataacaaaattccaggattaggcatgaacttggaggcttcggaattgaacttgctttataaagacaagtacaatgttgatgtaactgattcgtatgaacaacttcttcatgatgtaatagatggagacaaccatctatttatgagaagcgatgaggttgaagctgcatggaacattttatctccagttttaagtgagttagacaataataatgcgacaattgagcattacgagtttggtagcaagggtccagataaagccggtaatctctgggctaaacatggagtcaagtggttggatgattagtgaatttcacagttatacatcatacaaacactgaaattcctaaagaaggaattattagaaatccactctccatacttatcttagtgatcattgattgagatggaatcattgtgagaaaatttgcacacctgttacacactacagaaaaagttaagactttagattaatgagattgatggcactagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="7369" stop="8647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7668" g_stop="7814" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7815" i_stop="7918" i_length="104">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7919" g_stop="8347" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="576" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U599176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7668" e_stop="7814"/>
          <exon e_start="7919" e_stop="8347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGGCATAAGCAAGATCTTGTCACTAATGAGCTGATTCTGCGTGATGTGCCTGATGAGGCCATACTCATCAGAATCAATAACAAAATTCCAGGATTAGGCATGAACTTGGAGGCTTCGGAATTGAACTTGCTTTATAAAGACAAGTAATGTTTTCTATTTTCTTGTGTTAGTAATTTTGTGAATTTAGTGTTGTGCTAGGATCTCCATTTCCATATTTTCTTATTGTTTTCTCTTGTTGATGTACTAGGTACAATGTTGATGTAACTGATTCGTATGAACAACTTCTTCATGATGTAATAGATGGAGACAACCATCTATTTATGAGAAGCGATGAGGTTGAAGCTGCATGGAACATTTTATCTCCAGTTTTAAGTGAGTTAGACAATAATAATGCGACAATTGAGCATTACGAGTTTGGTAGCAAGGGTCCAGATAAAGCCGGTAATCTCTGGGCTAAACATGGAGTCAAGTGGTTGGATGATTAGTGAATTTCACAGTTATACATCATACAAACACTGAAATTCCTAAAGAAGGAATTATTAGAAATCCACTCTCCATACTTATCTTAGTGATCATTGATTGAGATGGAATCATTGTGAGAAAATTTGCACACCTGTTACACACTACAGAAAAAGTTAAGACTTTAGATTAATGAGATTGATGGCACTAGCTTTTG</genome_strand>
        <mrna_strand>GGGAGGGCATAAGCAAGATCTTGTCACTAATGAGCTGATTCTGCGTGATGTGCCTGATGAGGCCATACTCATCAGAATCAATAACAAAATTCCAGGATTAGGCATGAACTTGGAGGCTTCGGAATTGAACTTGCTTTATAAAGACAA........................................................................................................GTACAATGTTGATGTAACTGATTCGTATGAACAACTTCTTCATGATGTAATAGATGGAGACAACCATCTATTTATGAGAAGCGATGAGGTTGAAGCTGCATGGAACATTTTATCTCCAGTTTTAAGTGAGTTAGACAATAATAATGCGACAATTGAGCATTACGAGTTTGGTAGCAAGGGTCCAGATAAAGCCGGTAATCTCTGGGCTAAACATGGAGTCAAGTGGTTGGATGATTAGTGAATTTCACAGTTATACATCATACAAACACTGAAATTCCTAAAGAAGGAATTATTAGAAATCCACTCTCCATACTTATCTTAGTGATCATTGATTGAGATGGAATCATTGTGAGAAAATTTGCACACCTGTTACACACTACAGAAAAAGTTAAGACTTTAGATTAATGAGATTGATGGCACTAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571854" ref_strand="+" ref_description="SGN-U571854 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gttttgttgcattgccttaatttttgtttcacatcaagagattatggatagagagagaaggaagaggaagaatttggagaatgagagattagaaaaggaagaggaagatgaagatgaagatgagaaaattgacaagttttttgctcttataagaagcactaaagatttacgtgaccgtttgttagcaagaaatcaagtaacagagagatccaaaattttggaagaaaacagagattcagttcataacaattctgcagttggaatttggaatccatcagttcatgaatcacgagatttcatggtaattgaggcttctgcaattgcaggtccttccaattctaactccaacaaacaaagcaaagaagtagaagaagatgaaacaggaggacaaagggaaggaacaaaaaatgaagaaaaaaaatgtaatatgttagacttggacctcaatctttcactgtaagctagttcttttttttttttagtttacgggttcgattaatttattttcgcactcaaatcggaatacttatgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="12279" stop="13412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12578" g_stop="13112" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U571854" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12578" e_stop="13112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTGCATTGCCTTAATTTTTGTTTCACATCAAGAGATTATGGATAGAGAGAGAAGGAAGAGGAAGAATTTGGAGAATGAGAGATTAGAAAAGGAAGAGGAAGATGAAGATGAAGATGAGAAAATTGACAAGTTTTTTGCTCTTATAAGAAGCACTAAAGATTTACGTGACCGTTTGTTAGCAAGAAATCAAGTAACAGAGAGATCCAAAATTTTGGAAGAAAACAGAGATTCAGTTCATAACAATTCTGCAGTTGGAATTTGGAATCCATCAGTTCATGAATCACGAGATTTCATGGTAATTGAGGCTTCTGCAATTGCAGGTCCTTCCAATTCTAACTCCAACAAACAAAGCAAAGAAGTAGAAGAAGATGAAACAGGAGGACAAAGGGAAGGAACAAAAAATGAAGAAAAAAAATGTAATATGTTAGACTTGGACCTCAATCTTTCACTGTAAGCTAGTTCTTTTTTTTTTTTAGTTTACTGGTTCGATTAATTTATTTTCGCACTCAAATCGGAATACTTATGATAA</genome_strand>
        <mrna_strand>GTTTTGTTGCATTGCCTTAATTTTTGTTTCACATCAAGAGATTATGGATAGAGAGAGAAGGAAGAGGAAGAATTTGGAGAATGAGAGATTAGAAAAGGAAGAGGAAGATGAAGATGAAGATGAGAAAATTGACAAGTTTTTTGCTCTTATAAGAAGCACTAAAGATTTACGTGACCGTTTGTTAGCAAGAAATCAAGTAACAGAGAGATCCAAAATTTTGGAAGAAAACAGAGATTCAGTTCATAACAATTCTGCAGTTGGAATTTGGAATCCATCAGTTCATGAATCACGAGATTTCATGGTAATTGAGGCTTCTGCAATTGCAGGTCCTTCCAATTCTAACTCCAACAAACAAAGCAAAGAAGTAGAAGAAGATGAAACAGGAGGACAAAGGGAAGGAACAAAAAATGAAGAAAAAAAATGTAATATGTTAGACTTGGACCTCAATCTTTCACTGTAAGCTAGTTCTTTTTTTTTTTTAGTTTACGGGTTCGATTAATTTATTTTCGCACTCAAATCGGAATACTTATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563238" ref_strand="+" ref_description="SGN-U563238 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157346998|emb|CAO17380.1| (e_value=4e-76) unnamed; (*ATH) AT1G09390.1 (e_value=8e-69)  Symbol: None | GDSL-motif lipase/hydrolase family protein, Similar to early nodulin ENOD8 (Medicago sativa) GI:304037, lanatoside 15'-O-acetylesterase (Digitalis lanata) GI:3688284, elicitor-induced glycoprotein iEP4 (Daucus carota) GI:1911765; cont... ; (*SWP) sp|Q9FXE5|FUCO3_ARATH (e_value=5e-37) Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1; ">
      <seq>ctgcaggcaggaatgcaattcaagtcatatattctcaaggaggaagaaaattttgggtccacaacaccggaccattaggatgcctgcctcaaaaacttactctggttcagaaagtttcttctgatctcgatccgcatggctgtctggcaaattacaactccgctgctaaactgtttaatgaagggcttcgacatttgttgcaagagttgagatctgaaatgaaggatgctactatggtgtatgtagacatatatgctatcaaatatgatcttatagccaactccagcagttatggcttctcaaatccgttaatggcttgctgtggctatggaggtcctccgtacaactaccgtaaaggagtgacatgcggtcagcatgattatcaggtttgcagtgaagggtctgagttcataagttgggatggagttcattataccgaggcagctaatagagttatagcttctaagatactgtcaatggactactccactccacgaattggcttcgatttcttttgccattgattgtcatttgctagaataaagtgcaagcatgaattgatatatgttgcttcagagtattatgaaaaatatttaatttggaaaaatagaaaaaatgattggttataagaaagaggccaggtaaactttttgctctttagttttgaagtcacgatcccccttttcagtccagttttccctgttattttaggcatctataatgtattaattaatgttgtaagcaagtcttatgatattaattattaaacccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="15575" stop="13770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15264" g_stop="14994" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="294" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14993" i_stop="14550" i_length="444">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14549" g_stop="14068" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="778" r_length="484" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U563238" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15264" e_stop="14994"/>
          <exon e_start="14549" e_stop="14068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATGGTAAGCATAAAATCTGTTCTCGTTTGCTTAATTCCTAGTTCTTGGGTTGTCGATACTCAAAATGAATCTACTAAAGTTGGTACTGAAAGGCTGATATTATTAGTGGAAAAATGGAGGAGATAACATTCCTTGCTCTTGTAAATTTAAATTAAAAAACAAGAAAATGAAGAATTTGACGTCTCGTGACTGAATTCTAAAGGTCTTAGAACTTCATGTTGCAAGGATGATGGCAAGTAGATATAGAATATTCACTTATCTTATACACTAGTGACATTTACTAAGATATCCACTTCTGTGGAAACTTCCGAAGTACTATATTTCTTCTTTTCATACCATCATGTAGAGAGATTCAACGTAGTATATACTCTAGAGCTTCAGCCTGTTTGAAGATAATTGGCAGCTTACTCATACTACTGTTCATATATGATGATTCTACATTTGCAGGCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAATTTGGAAAAATAGAAAAAATGATTGGTTATAAGAAAGAGGCCAGGTAAACTTTTTGCTC-TTAGTTTTGAAGTCACGAT-CCCCTTTTCAGTCCAGTTTTCCCTGTTATTTTAGGCATCTATAATGTATTAATTAATGTTGTAAGCAAGTCTTATGATATTAATTATTAAACCCATTAAGT</genome_strand>
        <mrna_strand>GTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAATTTGGAAAAATAGAAAAAATGATTGGTTATAAGAAAGAGGCCAGGTAAACTTTTTGCTCTTTAGTTTTGAAGTCACGATCCCCCTTTTCAGTCCAGTTTTCCCTGTTATTTTAGGCATCTATAATGTATTAATTAATGTTGTAAGCAAGTCTTATGATATTAATTATTAAACCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563239" ref_strand="+" ref_description="SGN-U563239 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157346998|emb|CAO17380.1| (e_value=1e-80) unnamed; (*ATH) AT1G09390.1 (e_value=1e-78)  Symbol: None | GDSL-motif lipase/hydrolase family protein, Similar to early nodulin ENOD8 (Medicago sativa) GI:304037, lanatoside 15'-O-acetylesterase (Digitalis lanata) GI:3688284, elicitor-induced glycoprotein iEP4 (Daucus carota) GI:1911765; cont... ; (*SWP) sp|Q7Y1X1|EST_HEVBR (e_value=9e-41) Esterase OS=Hevea brasiliensis; ">
      <seq>gagcaaaataacatgggttgcctctcatgtttgccgcacatattacaagcttcagcttacattatacttttcatttttttcattctctcctctttctcaaacccagttcaatctcagtgtaaaaatagaccagtcattttcaattttggtgattctaattcggatacgggtggactcgttgccggactcgggtaccccattaaccttccaaatggtcgaaattttttccgccgttcaactggccgtctctctgatggccgccttattctcgattttctatgtcaaagtgttaatacaaggttcctgtgcccatacctagactctgtcggatctagtttcttgaatggagcaaattttgctatagcgggatcccggttactacccaagtatgaaccattcgccttaaatattcaagtcttgcagttccttcatttcaaggatcgctcaattgaacttgttagtgctgggtctggaaatttagttggtgatgaaggatttcgaaatgctcttttcatgatagatattagacagaatgacctagccgattcatttgctaagaacctgtcttacacagaagtagtcaagatgatcccctcctttgttacagagatcaggaatgcaattcnngtcatatattctcaaggaggaagaaaattttgggtccacaacaccggaccattannatgcctgcctcaaaacttactctggntcanaaagtttcttctganctcgatccgcanggntgtctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="17517" stop="14839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17217" g_stop="16938" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16937" i_stop="15990" i_length="948">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15989" g_stop="15804" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="466" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15803" i_stop="15676" i_length="128">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15675" g_stop="15515" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="627" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15514" i_stop="15265" i_length="250">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15264" g_stop="15139" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="752" r_length="125" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U563239" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17217" e_stop="16938"/>
          <exon e_start="15989" e_stop="15804"/>
          <exon e_start="15675" e_stop="15515"/>
          <exon e_start="15264" e_stop="15139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAATAACATGGGTTGCCTCTCATGTTTGCCGCACATATTACAAGCTTCAGCTTACATTATACTTTTCATTTTTTTCATTCTCTCCTCTTTCTCAAACCCAGTTCAATCTCAGTGTAAAAATAGACCAGTCATTTTCAATTTTGGTGATTCTAATTCGGATACGGGTGGACTCGTTGCCGGACTCGGGTACCCCATTAACCTTCCAAATGGTCGAAATTTTTTCCGCCGTTCAACTGGCCGTCTCTCTGATGGCCGCCTTATTCTCGATTTTCTATGTAAGTCCTTTTTCTCATTTTAATTAATTGTACATTGAGAAGTAAATAACATGAATGTGTAAGATTCACTGCATGTATTGATTGGTAGGTAGAGAGTCATATCTGTGAAATATTGTGAATTGTGATGAATAATTGATTGGGTCCTACATGGATTTTTTTTAAGCATTTTGGATTACATAAGTGAATGCAGCTTTAACTGTTCGTGCGATCAAATTGAGGTAGTAATTAATAGATTTACTTTCCAAAATTTATGATCCTTGAGAGTGAAAATTTTGATTAGGTAAACTATGATCTCTGTTGTACGTATTATACACTATTTTCTTGTTAATCTTTAGAGAAGACCTGAAGTAGATACCCTAACTTCCACAGCTCGCACGTGTGACCGATAGTTCAATTATTGTTCCAAGGCTCCCCTTCACTATGTACAACAAGCAAATTTGAAAGTAAAATCTGCGGCGTTTCATTTACCTGAACTCTGTTTTACAATGTGATACTCTTGTAAATATCAAAATACTCAAAATTGATAACTCATTGATGGTTGAATATGTCAATGTCCAGAATGAACTAATGATCTTCAGAGAATGGTTTACTTAGACTTTAGTGTCATTGGAAATACTAGGCGATTCAGTCATATAAGGAAAGACTGTAACACTACAGTGGAGCTTAGGGATTTGGAGTTATGTTTTATGGAACGTTGAAGTGGAAGGTGATTAGGACCTCAATTGTCAATTGAATCTATCAGTTTAGTTGGGGATCAACCAAGTGCCTGGTCTTCTTTTTAGTTATTATTTTGCAGAAGTAGCATGTGATGTGACCTTCTTTCTGCAATCACAGTGTAGGTTATTGTATATATACATGCTAGTTTGTTATGTAAGCATGATTTTACTCTTTACAAGTATCACGAGATACCAATGTATATGAGCTGAGATTGCAGTATTGTCAGCACAGGTCAAAGTGTTAATACAAGGTTCCTGTGCCCATACCTAGACTCTGTCGGATCTAGTTTCTTGAATGGAGCAAATTTTGCTATAGCGGGATCCCGGTTACTACCCAAGTATGAACCATTCGCCTTAAATATTCAAGTCTTGCAGTTCCTTCATTTCAAGGATCGCTCAATTGAACTTGTTAGTGCTGGTAATTCTTACACTTCCCTTTGATACTCTGTCTGACACTCTACTGATAAAATATGCAAATAAAAACAAAAGAAACGTGTGCTCAGAAATGTGAATATAATTTGACTTGTCTCATGTTGTTGCATTCAGGGTCTGGAAATTTAGTTGGTGATGAAGGATTTCGAAATGCTCTTTTCATGATAGATATTGGACAGAATGACCTAGCCGATTCATTTGCTAAGAACCTGTCTTACACAGAAGTAGTCAAGATGATCCCCTCCTTTGTTACAGAGATCAGGAATGCAATTCAGGTAATTTCTTTAATCACTAATTGCTCACTTTTCCTTGCTTCCCTGCCGAAAAGAAAAGAGTAAATTAGGTGCAAGAATAGCAGTAGCTCGCTATGTTAAAAAACATGGGAAGGATAAAGTTAGTTAAGAAAGGTGGCATCACAAGGTTTTTTTAAACATCATCACAAGGGCAAAGATTTGCTGAAAGTTAGCTTACTTAATTTTAGGTAGTTCTACAGTCTGTTCATTCCATTAAACTTTCCAAATGTAGGTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCA</genome_strand>
        <mrna_strand>GAGCAAAATAACATGGGTTGCCTCTCATGTTTGCCGCACATATTACAAGCTTCAGCTTACATTATACTTTTCATTTTTTTCATTCTCTCCTCTTTCTCAAACCCAGTTCAATCTCAGTGTAAAAATAGACCAGTCATTTTCAATTTTGGTGATTCTAATTCGGATACGGGTGGACTCGTTGCCGGACTCGGGTACCCCATTAACCTTCCAAATGGTCGAAATTTTTTCCGCCGTTCAACTGGCCGTCTCTCTGATGGCCGCCTTATTCTCGATTTTCTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGTGTTAATACAAGGTTCCTGTGCCCATACCTAGACTCTGTCGGATCTAGTTTCTTGAATGGAGCAAATTTTGCTATAGCGGGATCCCGGTTACTACCCAAGTATGAACCATTCGCCTTAAATATTCAAGTCTTGCAGTTCCTTCATTTCAAGGATCGCTCAATTGAACTTGTTAGTGCTG................................................................................................................................GGTCTGGAAATTTAGTTGGTGATGAAGGATTTCGAAATGCTCTTTTCATGATAGATATTAGACAGAATGACCTAGCCGATTCATTTGCTAAGAACCTGTCTTACACAGAAGTAGTCAAGATGATCCCCTCCTTTGTTACAGAGATCAGGAATGCAATTCNN..........................................................................................................................................................................................................................................................GTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTANNATGCCTGCCTC-AAAACTTACTCTGGNTCANAAAGTTTCTTCTGANCTCGATCCGCANGGNTGTCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570426" ref_strand="+" ref_description="SGN-U570426 Tomato 200607#2 [52 ESTs aligned] (*GB) gi|157346995|emb|CAO17377.1| (e_value=1e-101) unnamed; (*ATH) AT1G56700.2 (e_value=5e-83) |; (*SWP) sp|O73944|PCP_PYRFU (e_value=4e-12) Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus GN=pcp; ">
      <seq>cngccggggnngttaaagttaaggcaattatctgagaagtgagattattgcaatttgcaagtcaagaaggcaaaacaaacaaacaacaaagtcatgacaataattacgtaaaacatattttataataataatatgatttcttgttttatattataacaacccaccactaccacgttctttatccatattttttttaattattttaataatattccaaaattttactcatcaataatgaagaatcccaatcagtagtcttctaccattataatcaccttttgatcagataagaccacttgcttcagtcctttattcttttggctctctctctttcagctttcagtttcgtctgtctaggggatacatggggtctgaagggccttcacctgtgatcgtacatgtaactggtttcaagaaatttcatggagttgctgaaaatccaacagaaaccattgtaagtaatcttaaagattatatgaagaaaaggggtatgcccaaagggctgatccttgggaattgcagcatccttgatactgcaggccagggagccctagttcccttatatcagacactgcaagctggtttaagcggtggtgactcggagtcatctaattccaagagagttatttgggtacactttggagttaatagtggtgccacaatgtttgccatagagaatcaggctgtcaatgaagctactttccgttgtccagatgagatgggatggaaacctcagaaagtacctattgttcctgcagatggggcaatttcgcgtaaacgagagacttctcttccggtggaggaaatgaccaaggtattggcaaagatgggatatgaagtaatgacctctgatgatgcaggccggtttgtatgcaattatgtatactaccattccttgcgttttgcagagcataatggtgtccgatcactatttgtacacgttcccctcttcctaaccatagacgaggagacgcaaatgcaatttgctgcttctttgctggagctactcgcctcttcatactagtcctcgacttctgtgtctggaagtgtatttgccttgttatttatgctgtgtatgcggaagaaggttgatctggatataaatgtaatgctttaataaacagtgaacttttagtgaatggcaaatgcatatggtgtgtacatgtatcttcctcaacattccttgggtggtttatctcgttgatttggagatgtttcatgcctatttgcgagcaaacttacagctttctgtatctcctaatggatatgataggaacttgtccttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="25304" stop="31527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25597" g_stop="25939" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26508" g_stop="26795" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="631" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28803" g_stop="28907" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="736" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29016" g_stop="29063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="784" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="31231" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="1292" r_length="508" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U570426" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25597" e_stop="25939"/>
          <exon e_start="26508" e_stop="26795"/>
          <exon e_start="28803" e_stop="28907"/>
          <exon e_start="29016" e_stop="29063"/>
          <exon e_start="30724" e_stop="31231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAGGAGGTTAAAGTTAAGGCAATTATCTGAGAAGTGAGATTATTGCAATTTGCAAGTCAAGAAGGCAAAACAAACAAACAACAAAGTCATGACAATAATTACGTAAAACATATTTTATAATAATAATATGATTTCTTGTTTTATATTATAACAACCCACCACTACCACGTTCTTTATCCATATTTTTTTTAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAGGTAACAAAATTTATGTTTTCAATTCTAAGTTTTCTGCTTTTTATTAGTCTTGATGATTTATGGGGTTTCGTATTCTGATCCATGTGATCTCTGATTATTTTCAACTGGGGTGTAGTTTTTTTGGATGTTTATAATCATGACTTTGACTTATTAGTGATGAATTTGGGGTTTCTTGGTATGTGAAATCGTTCATGTTTAGAGGAATTGGGAAGATTCTAACCTGGGTTTTTTGTTTGATTTTGGATCAAAGTTTTGAGCTTTAATTGTTATCAACATCGTTTCACAAAGGCCTATTTTTTTTGTTCTTTTATCCTTTTTACATGTTATAGTTTGAAGTTTTGCTTTGTTATTCTTCATTGATTACTGTTGGTGCAAAATTTCTACTTTTAAATCACTTTGAGACAGAAAGATTGTCATAATTGGACACTGATCCGTGGTGTCTGTGATGGGAATTTATGGTTTACAATCTTGCAATGAAATCTTTTAGATTTTTGGTTTATAGTTTTGTTTGATGCAGGTGTTTAATTAGAAAGTGAATCTATTTTTTGATGCTTTGAATTTTGTTCAGTTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGGGTCAGTTGCTCACTTGGCTTCTTTTACCTTTCATGCTTAACTTTGTTCTGCTGTCCAAATGAGGAAATGATAGGTTCTTAATTTCATTTGGTTAGAAAATGATCACATAGCCATTTTAAAATTGTGTAGCTCTGTATTGTTTTTGGTGTCAAGTGTAAGCCGTTAGTGATAGAACAAACAGAAGCTATTTATGCAGCTTATACAACGGTTGTAACTTAGAAAATAGGACCCTATGCAGTGTTGTGAAAGGCGATCGCCTCGTCGCCAGTGGTGAGAGGTGAGGCGAACCTTCATCGCTTTTTAACTTTGTGGTGAGGCGATCTTCGACAGGTGAGGCCATGAAATCAAAGGCGAGAGGCGAGAAAGGCATTGCCTTTTGTATTTTTGTTAAAAAGGGCTACTAATTTAGGATTTTAAAAAGCTAAAAGGTACTTTTAGGGTTTTCGACTACACTCCTCCAATGACCAGCCAGACTTCTCCAGCAACTCCAAAGTCCAATCAATACATATTTCTTCTTCTTCCTCAGTTTCTTTTCCTTCTTCTTCCTCAGATTTCAAAGTCACTTCTACCTCTGTTTTGACTTGTGCTCTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGCATGTACTATCTATTTTGAGTTTTTGAATAGAAATATTTGCTAATATGTTATTGCTATTGAGTTTTTTGATTACTTATAAATACAATTAAATATTGAAATTTTTGGTACTAATTGGCGTTGCACTTCAAAAAGGCAAGCGCCTCGCCGCTCGCCTCGTCTTGTGGCGAAGCAGACCCTTGTCGGCTTTTATCGCCTTCCGGCGTCCAAAATACTGTCCCTATGTAACTACAACACTTCTGAAGCGGGGTTACATTTTCTGATGTAGTATACCTGTGATATATAATATAGACTAACTGTTACCTTTCTTTTTTTTAAAAAAAGGTCACGTGACTGGTAATTCCATTGGACCTTAATATGACATAAAGATGGAAATTTTTCTTTATGGAATCTAACAGGACCACATGACACAATTAGTGTTCCTTTTCTCCTATTACGAAATATATGACCTTTAATTTGGATGTGGTTGGTTTTATCTTGGAAATATCATATTTCTACTTTTGTCATGTACGATATGGAAGTTTTGGATCATAGTTCATACAAATTGATCATCTTTGAATGATGCAGGGTGCTACTGCTTTTGTATTTTGTGGAAGGATCGTTGCTGACAAAATGGTCATTAAATTAATTTTTTAATCCTGAAAACCGCTATACTTCGTTTTTCAGAAATTTGACGCATGCTATGATGTGTAGGCGGCACCTTATATATACTCTAGGCTCTTTGGAAAATCCTGTTCTGGACCCAATCCTGTGAAAGTGTACTTAAATATGCTGCTGGAAATGTTACCCTTATAAAAAATATGCTACTAGAGCCTAGAATGTTCCACAAATTTACCTTAACAAAATGGGTTTGGTTCATAGTCTTGGGATAGTTAATGAATCATTTAAAATCAGAATTGTATTCAGGTGTTAAGAGAAGGTAGATAAAAGGGAGGGATAAAGGTCGCAAATGGGGGATAAGGGGAGGGATAAAGCTAAACTAAGAGATTGTTGTTTATTTGTTTACAACCAAATGACCTAATTCTTTTGTCGTGCTTTATCTTTTATACTTGTGACTTGTGAGGAGAAATGTTGTCCATTTTTCGTTGAAATTGGTGAGTATCACATATTCTTGTATAGAGAATACCACTAAAGTTTTTAATTCCTCTAAGATATATTGATACAGGGCACATATGACATAACATAGTTGCTTGTAGTACCACTCTATAATGACACGAGGAGGGAATGGTGTTTATGGTGTTCAAGTGGCTAGAGAGTATTATGGTTATGTTCTAGAGTCTTTGTTGCGAATTCTCTGTCACAGTCAAATTATCTATGGAGTATTTTGATGCCCAATATTTGTACTTCATATACCAAGATTAATCTAATTTTTGGTAATTTTTATCTAGGTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAGGTTAGTTAAAGGACCTTCCAGTTTTCATTTGTCCTGTTAAAAGACCTTCCAGTTTCAGTTTGTACAGTTCATCAACTGAACTCAAGATTTTTATCCTGTTACTTGCAGAAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAGGTATTATGATTTCTTGCATCCATCTCTCATGATTTCTGTAGAATGGTTATTAAAATTTAATGCTTATCTTGTTTTCCAACTTTGAAGTCAACCAAATGTGGTTGGTACTTATATGAAACAGTTGTATGCATTGGTTCATACTTCATTGAAGTTTATATACCATCTTTTAAAAGTTGAAGGGAGTTTGCTATACACTTCACTGTTAGACTCCATTTTTTGAGTTAACACTTTGTCTTGGTTTCCAAAAGGGAAGCAGGACGGCAAGACCAGAGAAGTTGATTGTTTACTTCCTTTATATGAAGTATTGGTGATGATTATCCACTTGTTTGACAAGTAAAAGTAATGTATGACCCTACTAGGGAATGACCCTTGTAAATAATGATCTAAAAAATTAGTTAGTTTGGAAGATAGAAGTGCTTAGGTATAACAGCTTTGAGCTGTCGAGTGACGATTGGCCGAATTGTAGAAATATAAAAGACAATTCTGGGCGTCCTATGCTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTTAGAAAAATGAAAATCTTAGTAACTAAAGGAAGGGAAATCAACTTACGTTTCTCCACTTCTTTTTTGTTTTCTTTTTGATAATTAAGGTTAAAGCTTAATCTTGGACCACATGGTAGTATCCCTATTCAAAGATATCAGACGAACAGGTAGTTTTAAATGGGGAAAAAGAAGAGCCCACTGTGGAAATTTTTTCCAGTAGGAAGATCACACCGATTTCTCTGAACATCCAGTTTCTGGAGTGGGGAGTTTTTACTAGCATCTAATCTTTCTACAGATCGCACCGACTGGAAATAGCTGCTTCCTGTAACTTCTAATCCAGGAACAATTTATTTTTGTTTGTCTTCGACACCTATAGGTGTCGTACCACTTCTCTTTATACTGTGTTCTCTCTTTGTGTAGACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTA</genome_strand>
        <mrna_strand>CNGCCGGGGNNGTTAAAGTTAAGGCAATTATCTGAGAAGTGAGATTATTGCAATTTGCAAGTCAAGAAGGCAAAACAAACAAACAACAAAGTCATGACAATAATTACGTAAAACATATTTTATAATAATAATATGATTTCTTGTTTTATATTATAACAACCCACCACTACCACGTTCTTTATCCATATTTTTTTTAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG............................................................................................................AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599709" ref_strand="+" ref_description="SGN-U599709 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggaaatagacacagagcactgagctgaggaagtaacttgtaaacacaaagtcataagctttttggaagctcaagattgttggttcactgtccatgcttatacatgctaaaccttgagttaaatgcttaatattccagcctcaatggttctctttccttttctggtcatattcttcataatcctttaaatgcaccaggaccggatggaaagatatggacctatgttgcgagggttgattcttcattttatgatatacagttcgaatccaatttcttctctcaagtattccgagctcatgaactttttaaagatttttattcatttatttttactgaaaaatattctagtttccagggattatgacattgtgaactgttaccaagaccaataaccgtggcttctaaattatttcacttttgctttgcttcatactatctcagtcacttttgtgacttccttgaggagggaggagctgatgaataacgaagtggtgtagtgcttgttggaaaatatttcctatcttgaatagttggagttgccatccaagctaaacactaatttctccatcttatatatacatgattttccttgatatgttttcatttccatacctttatttgattcagggatccctgcataatcagttctttcaattttccctatctacctaagaacggacggtctgcgatacatggatcttggatcgagaaacgtatcgaagctccgggtctagtctgtgtactttggacttttcgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="29261" stop="30624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29561" g_stop="30324" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U599709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29561" e_stop="30324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTT</genome_strand>
        <mrna_strand>CTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAA-ATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAA-CGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598686" ref_strand="+" ref_description="SGN-U598686 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|56550183|emb|CAE51357.1| (e_value=1e-57) putative; (*ATH) AT1G02460.1 (e_value=3e-58)  Symbol: None | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein, similar to polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from (Glycine max); contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)... ; (*SWP) sp|P48978|PGLR_MALDO (e_value=6e-18) Polygalacturonase OS=Malus domestica; ">
      <seq>gatttaaattattactacttttatatcattaacaaaatggatacatgcttacagttaagttttagtcctctctggaacaagactagaagagctaaaactttaatacatactattaagtactccatcttttacaagtttgtatttcttagcaaatcatgtatcagcattgatcaagatcattacttggtaatgactgaggtgtgccttccaacaagcaaaaaactggtggaattgtaagagtaattagagcaccataagcattccaacaaaatggttccaagattttttgtccttgagcaggatataactccacatccaaaaaagtcaaatttgtgcaagggacactgttactacaagccaaatgcattggtggacttctcacatcataagtaccctttatgtttgaataaatcacatcagatatgtacactgctgaagtctgatttgcacagctctttgtgctgcagtaatattgatctaaaattatcggatttcgaacactttccattctaatgttgttgaaattaatgttggatactgtcccaaatcctccttgccctgtcttgatcctaacaccattgtcttgaatacttaatagttgaatcttccactgtaatgttggatacacatgcccgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="32198" stop="33434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32498" g_stop="33134" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U598686" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32498" e_stop="33134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAAAATA-TACTACTTTTATATCATTAACAAAATGGATACATGCTTACAGTTAAGTTTTAGTCCTCTCTGGAACAAGACTAGAAGAGCTAAAACTTTAATACATACTATTAAGTACTCCATCTTTTACAAGTTTGTATTTCTTAGCAAATCATGTATCAGCATTGATCAAGATCATTACTTGGTAATGACTGAGGTGTGCCTTCCAACAAGCAAAAAACTGGTGGAATTGTAAGAGTAATTAGAGCACCATAAGCATTCCAACAAAATGGTTCCAAGATTTTTTGTCCTTGAGCAGGATATAACTCCACATCCAAAAAAGTCAAATTTGTGCAAGGGACACTGTTACTACAAGCCAAATGCATTGGTGGACTTCTCACATCATAAGTACCCTTTATGTTTGAATAAATCACATCAGATATGTACACTGCTGAAGTCTGATTTGCACAGCTCTTTGTGCTGCAGTAATATTGATCTAAAATTATCGGATTTCGAACACTTTCCATTCTAATGTTGTTGAAATTAATGTTGGATACTGTCCCAAATCCTCCTTGCCATGTCTTGATCCTAACACCATTGTC-TGAATACTTAATAGTTGAATCTTCCACTGTAATGTTGGATACACATGCCCGGGAA</genome_strand>
        <mrna_strand>GATTTAAATTATTACTACTTTTATATCATTAACAAAATGGATACATGCTTACAGTTAAGTTTTAGTCCTCTCTGGAACAAGACTAGAAGAGCTAAAACTTTAATACATACTATTAAGTACTCCATCTTTTACAAGTTTGTATTTCTTAGCAAATCATGTATCAGCATTGATCAAGATCATTACTTGGTAATGACTGAGGTGTGCCTTCCAACAAGCAAAAAACTGGTGGAATTGTAAGAGTAATTAGAGCACCATAAGCATTCCAACAAAATGGTTCCAAGATTTTTTGTCCTTGAGCAGGATATAACTCCACATCCAAAAAAGTCAAATTTGTGCAAGGGACACTGTTACTACAAGCCAAATGCATTGGTGGACTTCTCACATCATAAGTACCCTTTATGTTTGAATAAATCACATCAGATATGTACACTGCTGAAGTCTGATTTGCACAGCTCTTTGTGCTGCAGTAATATTGATCTAAAATTATCGGATTTCGAACACTTTCCATTCTAATGTTGTTGAAATTAATGTTGGATACTGTCCCAAATCCTCCTTGCCCTGTCTTGATCCTAACACCATTGTCTTGAATACTTAATAGTTGAATCTTCCACTGTAATGTTGGATACACATGCCCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581408" ref_strand="+" ref_description="SGN-U581408 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>atcccccgggttgcatgtgaaacgaaatgcatagtctttccaacttgtttacaagtgctggtttttagttggtggtcacataaacaacttcatttttgttgtttttttgacttccaagaacgtgggtgccttgccttatatccttctaacttctgaaaaaacctactgataatgacaaaaataagcatgatctttttagtctagtgagaattgacattttagttttctatataggattagtgaggggtctagtaaaaacaagtagccaaattgtgttacttcacttcccttaagttctataagtactctgttttagtttaaaaaagctatactagctggacacaaattatggaattcactagattttgcttcttggttttttctgttttcttgatttcctatgttttttcagttcatggtaggttttatgattaccccaaagtgtcgcgttttcgtgcattgtcacaaatatcaatgccacctttccctgcccctgcccctggccctggccctgcccctgctcctgaacctaagggtgatccaaatactgagaatgtgaagaattcatcaaatgattatgcggcaggcattttcaatgtgttgtcttatggggctgctggtgatggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="35449" stop="34236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35138" g_stop="34536" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="629" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U581408" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35138" e_stop="34536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATGCAGCAGGCATTTTCAATGTGTTGTCTTATGGGGCTGTTGGTGATGGTGT</genome_strand>
        <mrna_strand>ATGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAATACTGAGAATGTGAAGAATTCATCAAATGATTATGCGGCAGGCATTTTCAATGTGTTGTCTTATGGGGCTGCTGGTGATGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587631" ref_strand="+" ref_description="SGN-U587631 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346992|emb|CAO17374.1| (e_value=8e-31) unnamed; (*SWP) sp|Q6AXL8|ZMAT5_DANRE (e_value=8e-18) Zinc finger matrin-type protein 5 OS=Danio rerio GN=zmat5; ">
      <seq>tactactgcgattactgcgataaggaattccaggataccgcagctgctcggaggcgtcatcttcaaggtgttcaacatcaaagagccaaggctctttggtacgactccttgcgcaatccccaattatttaacgatccggactcgttcggtaaaggagtctgcaatcactttgttcgaacggggtattgccagtatggggactcctgcaaatattatcatcccaagcaaaaaccctcaaactgtgaaccaaacggggaactccctccaggggaaaatagtaaagagggtttccatttcagtagtcaacctttttggttcaccctctttttcaagtgatgtgttcagaaaaaaggccggagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="40850" stop="38179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40550" g_stop="40436" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40435" i_stop="40362" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40361" g_stop="40297" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="180" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40296" i_stop="39558" i_length="739">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39557" g_stop="39473" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="268" r_length="88" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39472" i_stop="38714" i_length="759">
            <donor d_prob="0.992" d_score="0.87"/>
            <acceptor a_prob="0.940" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38713" g_stop="38651" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="332" r_length="64" r_score="0.873"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38650" i_stop="38510" i_length="141">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38509" g_stop="38479" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="363" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U587631" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40550" e_stop="40436"/>
          <exon e_start="40361" e_stop="40297"/>
          <exon e_start="39557" e_stop="39473"/>
          <exon e_start="38713" e_stop="38651"/>
          <exon e_start="38509" e_stop="38479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCAGTAAGTTTCTCCTTTTTCTTCTTCTTAGTAAATTAATTTCCAAGTGTTGATGAACGATTTTTCTGGGAGAACAGATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACGGTACTGCTCTTATCTTCGTATTTTAGTATGCAATATTTTGAGACACGGAGTCAGAAGTTGTATTACATTTTTGGGTTGTCCATTTTATTGCAACTGATGGAAGAAGAAACAAAAGTGATAGATGAGTCAGATTTTCGCATTTCATCAATCAATATTAGACTGGTTCGAGTTGGTTATATGAATCATCTGTATCTTTTATTCAGAAGATTCATCATCTTTTGAGTTCAATTGATGCATTTCATAATTACCATTCAAAAAAAAAAAAGAGAGACTGTTGCAATCTAAGATACTTTGAAGTAGAATTTGAGGTTTCTAGGCCTTTTACTTTAATTTATAAGGTTTTGTAAGGCCTATAGGCTATAATCTTCTCAGAATACGGCTAAGTTGTATGTCTCCAACTTGATGAGCATGGTATGAATTGTCGTAGGTGAATTTCATAATCTGCTAGCTTAGCTTAATTTGTTATTTTAGCAGATTCACATCATTATGGTTGAAAAAGTTTAGTAATATGCTGATAAGTGATAAACATTACTGATAGTACTTCTATTCACTAAGTTATGAACATAAGTGAATGTTGCTTTACTTCATCCACCTGAAGTATTGCCCAAGACAAACAAAATGTTGAAGGAGCAACAACAGTGGATTGGGGATGGTGAAGTCTAAACTCTAAATAAATACTATGTGTTTTACACCCTTTATTGGATAATGTTGTTGATCATATCTTTTACATGTATCAAAGGGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGC-AAAACCCTCAAACTGTGAACCAAAC-GGG-ACTCCCTCCAGGTATCTTTCTCGCATGTTTTGAGTATATTCATATTCAAGATTTTACTGTCAACCAACTAATGTCTTAAATCTTGAACTATATTAACCACCACGATAACTATTTAAACTTACTGCCCTCAAAAAGTATTTTTGTTTCTTATATTAACAACCATGATAATTTCTGTTGTTTGCTGCTTCATGAAATGGTTGTCCTTGTCACTCATCCAAAAGATCTCCTGGTTTTTGTCAGATGTTATTAAAATCTCAAAGGTATATCTTAGGAAAGTAATCTAACTTTTGGGAAGTCAGAGCTTTAAGAAGAACTGGGGAATCAATCTTTTGAATTTCTTGGATTTGGCAATGTGCAGAATTAACTTGTGCAAGCGGTATCCTGTGCTATTTTTTTAAAAAAACATTGTTAATAGTATTGTGTACATTTTGCCAACGAACTTATCTTGTTATGCTACAAGTTCTTCATTCAAGATCTCGAAATTTATGTACCAACTCTTTTGAAGTTCTTTGTCCTGTAGTTTTAAGTTTTCATTCCTAGTAGTTATTCTAAAAGATTTGAGTGACCTGATTAGTTTTTTTAAGTTGTACAGTATTAATTCTTGAAATGGATATACACTTGAATTGGGAGTATACTTGATTGTCAATCATATCCTATGAATTTGAATAGCTGTGGAAGAACACAGTGAATGCAAACTATGAATTTGAATAGCTGTGGAGGAACACAGTGCATGCAAACTTTTGATTTCCTTTTGTTTATCCAATTCTCAGGGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACC-TTTTGGTTCAGCCTCTTTTCCAGGCAAGCATTGCTTTTGCATGTATTTTCTTCCTATTTTCACTTAAAATGTCAGGTGTTGTGTTTTTCCAATTCCCCAGTTAATCTGCTGATGCTCTTGGTAGTTTTTCTTCTAAATCTAGTTGTGATGTGTGGTTGTAGCAGGTGATGTGTTCAGAGAAAAGGCCGGAGCATC</genome_strand>
        <mrna_strand>TACTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCA..........................................................................ATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAAACCCTCAAACTGTGAACCAAACGGGGAACTCCCTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAATAGTAAAGAGGGTTTCCATTTCAGTAGTCAACCTTTTTGGTTCACCCTCTTTTTCAA.............................................................................................................................................GTGATGTGTTCAGAAAAAAGGCCGGAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578263" ref_strand="+" ref_description="SGN-U578263 Tomato 200607#2 [109 ESTs aligned] (*GB) gi|82623409|gb|ABB87119.1| (e_value=0) NtK-1-like; (*ATH) AT5G26751.1 (e_value=0) | Symbol: None | shaggy-related protein kinase alpha / ASK-alpha (ASK1), identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from (Arabidopsis thaliana) | chr5:9399384-9402479 REVERSE | Aliases: F2P16.21, F2P16_21; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=0) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1; ">
      <seq>tctttctctctctcaatcaatatcaggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactggtgaaactgttgctattaaaaaggttcttcaagataaaagatataagaaccgagaattgcagacaatgcgccttcttgaccaccctaatgttgtgtctctcaaacactgcttcttttccacaactgacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcaaaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccacatacccaccaggttaaattatgcgattttgggagtgccaaagttctggttaaaggagaaccaaatatttcttacatctgttctaggtattatcgagcacctgagctcatatttggtgcaacagagtacactactgctatagatgtttggtctgctggctgtgtcctagctgagctacttcttggtcagccattatttccaggtgaaagtggagttgatcagcttgttgagatcattaaggttttaggcactcctacaagggaagaaattaaatgtatgaatcccaactataatgagttcaaatttcctcaaattaaagctcatccatggcacaagatatttcataagcgcatgcctccagaagcagttgatctggtctcaagactgcttcagtactctcctaacttgcgctgtgctgctttggatgccttggttcacccattttttgacgagcttcgtgatcccaatacacgcttgcctaatggacgctttcttcctcccttgtttaacttcaaggctcatgagttgaagaatgtgcatgcagagatattactgaagttggttccagagcacgccagaaaacagtgcccttcccttgggttatgagttcctgccttgtgatagaaataatttaagtgtaccctttgaagctgtgtttcttctctgtatcaatttgttccttctttcccttatcttaccatgtctctgttgtccctttgtattattattattatatcttgttttgtaaaagcagatgtagggaattgatctttaacaaatacccgatgttcaacctgtgttcctttttaccctgttccgatatatcctatgcttgtaacattatgtggttgagaattaacaatttgagtgaacgttattattatgggattgcaaattaatgatagggtgactgttgatatggctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48033" stop="41032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47733" g_stop="47579" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="317" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="410" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45463" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="743" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="818" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44078" g_stop="44022" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="875" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43892" g_stop="43752" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1016" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43656" g_stop="43606" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1067" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="42510" g_stop="42415" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1068" r_stop="1163" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="42323" g_stop="42240" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1247" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="41924" g_stop="41822" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1350" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="41735" g_stop="41332" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1351" r_stop="1754" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U578263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47733" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
          <exon e_start="44078" e_stop="44022"/>
          <exon e_start="43892" e_stop="43752"/>
          <exon e_start="43656" e_stop="43606"/>
          <exon e_start="42510" e_stop="42415"/>
          <exon e_start="42323" e_stop="42240"/>
          <exon e_start="41924" e_stop="41822"/>
          <exon e_start="41735" e_stop="41332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTGGTATAGTTATCTACTCCACTGCTTTGCTGTTTATTTCCTTTCAGCTTTTTGTTGTTGCCGCTTTGCCGGTAACTGTTTTGCTTTATTTTCATTATAATAGATATGATGTGAACATCTGCTCCAAATGTATGGAAAAATGTACCGAAGATATGTTTTAAGTTTGTCAATGATTTGATGTATGGAGTAGAATAATGCAATATGGTTGATTCCTTCATTGAGAGAAAAAATTCTTTCCTCATGTGCTCATTACTCTTCTTATAATGTTATCAATCATGCATTTTGGAAATGCGTTAAGCTACTGATCTCCTCAGAGAAATAGAAGGATGTAACTAGATTGATGTACTGCATGTAAGGAGAGATGGGAATGTAACTTCGCATCCACCATGAACTCACTTTTCTGTGTCTTATTTTGTCTGTGGACGCTCTGTTGTGAAAATATGTTTTGCTGCGCTGATGTGAGCTTTCATCACGCTCGGTTGACATCATTTCTTCCGATTGAGTAATGGATTTTAGTACAAAGATAGTTATATGAGAGACTGATATTGACATAGTTGGTGAACTTGCTATGACCTTAACCTAAGCAGGCAATTTATTCTGCTTTATTGATATATTTCAATTTTTTTAACTTGCTAGCAATTGTCTTTATATTATCTCTTTATTGGCTCCTGAAGGGACTGGAACCTAAAGAATATTAGAAAGGATGAAAGAAGAAGTACTTGATGCGACCCAAAATATAAAAGGAGAACCAATGTATTTGCAATTTTAGTGTGCATAGTGATGCAAATTTCTTCCCAATTTGAAGGAAACAGTTCTATTTATTTTGCTCTACTCTCCTGGCTTATGACTGTTGAACATGTTAGCAAGTGCTATTAAGAACTACTTGTTCTTTCCATTTGCATTTCTCATTTCTCTCTGGATACTAAAAATCCATGGCATGGTACTTTTTTGGCAGGTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTGGTGTGTTCACATTTTTTCTTAGCCTCTTGTCCTTCCTAACATATGTGTTAACATTTTTAGCCTCTTGTCCTTCCTTACATATGTGTTAACATTCTTTCTGATTGGATAATCTGCTCCAATTTTTGACAGGTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAGGTAGGTTGTTACTTTCTCTTAATATTAGTGTATTCGTGGACAGTATTCCATATTACATTGACAATATCTCATTGATTGCTTTCTTCCATTTTCAGCCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAGGTAATCTTGTCTATTTGACTTTCTTGTCTGCAGTTCCTTGCCAACTTTATTTCGACCTTTGTCCCCTTCCTCTGCTGTTCGTGATTTTCTTTCATCATTGTCGTTTTTTGTTTATTTCCTTCTTTTCATTTATTGCATCCAATTGTAATTTTTATAGGCCTTCTTTCCTGCCTTTCTATTTTGGATTTATTTACTGCTTGACTTGCAATGTTCTGGGTCAACCCTTGTGTGATCTCTGCTTTCTCAGATTTTTTTTTCTGCAAATGTATCTTATGGGGAGATAATAGCTCTTTTTAGTGTCTGTATTAGCACATTCCTATCATTTTAATCATGTTATGCATTTTTTAGCAATGAGATTTTTCAAGATGATGTAATAGGGAAAATTAAAAGGAAATTGGAGGAATTAACTTGGCTTTCAGTTTGTGTATTGCTTTGCTGCTGTTGTGACCAAGTTTTGATATTAACTGAGATCCACCTCTTCCAAACTTCCATATAAACCAAGCTTATGATTTGTTGATCAAATAGAACTCAGAGATGGTGAGATAGGCTTTTTCTGACCAATTATAGTTTTACATGAGGCATCCCACCAAAACTTTGGAGTCTGGTCTTCTGACCAGAATAATGTGATTCTAGTAACAGGTGATTCTGACCTGGATAGTCTGTAAATGCCCAATGATTTTGTCCTCTACTCTGGTCGGTTCCGTAAATTTAGGTGTACTTGATTCTGTGCTAAGTTCAGTTTATCCTACTGTTTAGATTCTAGATTATAATTAATTGAAGGAGCTTTGTTTGAATGTTAAGGAATTTGCGCTGGCGTAATACGTTTCCTTTTTCTGCTTGTGTAACAGTTTCAGATTCGAAGATTCTGTAACTAAGACGAGTTCACTGTTTTTTGATAAAGAAATAAAAGTAAAATTATTGTTTTAGTAATAAGACAGCTTTCTGTACTATTAACATCTCAATTATTGTCATAGATAAATATGGCTAAGAAGATTCTCAACCTTTTGCTGATTGGCCATGTTACTTAATTTGTTTTGAGTTTGGCCCACATCTACTTTTTTTTGCCCAAACTATATCTCCTACTACATTTTGCAGGTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGGTACTTGAAATGCAACTTATTGTAACCAACCCCTTCATAGAACTGGCTAGTATACACAACGCAACAAGTCATTTCTAATGTTGATTTTCAGATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCTGTAAGTATGCCGAATTTGTTTATTCGAGCTAATCTCTTTCGCCTATGTATATCACAGAATATACAGGGATCACATTTCTGTATCTCTGTTCAGTGTTTGACATATTTTGATGTTCTTTTTATAGTTGAACACGAACCCATTATTTTGTAAAAGAGTATCTAAATTTTGACTCAACATTGCATGCCAGTCTTTCTTTTCCTTGTCTTGGGCTTCGCCGAATTTCTTGAAGAGCAATGCAGCTGTAGTTTGATTTGTCAATGGTGTGATTATTTCAGTCTAGTTCTAAGTTGAGAGGTGTACTAATTTTGAATGCAGTTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATGGTATGTTGTTGACTAGACTTGTTTCAGATTAGCTTCTTTCCGTAAGTTGCAAGTGAATCTATTGAATCTGGGTTTCTTGTCACCAGAGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCT</genome_strand>
        <mrna_strand>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG.................................................................................................................................GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG...............................................................................................CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG...........................................................................................ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT...........................................................................................................................................................................................................................................................................................................................TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG......................................................................................AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590128" ref_strand="+" ref_description="SGN-U590128 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|82623409|gb|ABB87119.1| (e_value=5e-39) NtK-1-like; (*ATH) AT5G26751.1 (e_value=5e-34) | Symbol: None | shaggy-related protein kinase alpha / ASK-alpha (ASK1), identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from (Arabidopsis thaliana) | chr5:9399384-9402479 REVERSE | Aliases: F2P16.21, F2P16_21; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=1e-36) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1; ">
      <seq>ggttcttctttctctctttgtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatgaactgtatcttaacttggttcttgagtatgtacctgaaaccgttcaccgtgttatcaaacactacaataagctgaatcanaggatgccgttgatacttgtgaagctttatacatatcagattttcagggcattgtcttacatacaccgcactattggagtgtgccacagggacattaaacctcagaatcttttggtgaatccactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="48008" stop="44729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47708" g_stop="47579" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="292" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="385" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45883" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="422" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45882" i_stop="45586" i_length="297">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45585" g_stop="45463" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="545" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45105" g_stop="45031" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="620" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U590128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47708" e_stop="47579"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45883"/>
          <exon e_start="45585" e_stop="45463"/>
          <exon e_start="45105" e_stop="45031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAGGTAGAATACACTTTTTTAAAGTGAGTTGTCATTTATATAGTTCCTCTTTGTTAAGAACTCCCAATGTGTGAGACCTCTGCAAATCCTGTTGTACAAGTGATTGTTTTCCTATATTTCATATATGTGAGATGTTGGACAAGAGATTGTTGCTAAAATTGTTCCAGTATTTTTCTAGTTCTTTTGTTTGTTCTTACGATGGGCCAACCTTGGAAAGTCCGCCAGACTGGTTTTTATTATGAGAAACTAGTTTCACTTCAATTACCTTGTTTTTAATGCACTTCGATAGCTAATGATTTTCTTGAGGTTGTTCTATTGTGTAACATGCCTAAAGTACAATATGCTGTTTCTGTCTGGCAGATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG</genome_strand>
        <mrna_strand>GGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAG.........................................................................................................................................................................................................................................................................................................GATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCANAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG.....................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591901" ref_strand="+" ref_description="SGN-U591901 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|82623409|gb|ABB87119.1| (e_value=5e-59) NtK-1-like; (*ATH) AT5G26751.1 (e_value=1e-52) | Symbol: None | shaggy-related protein kinase alpha / ASK-alpha (ASK1), identical to shaggy-related protein kinase alpha SP:P43288 GI:460832 from (Arabidopsis thaliana) | chr5:9399384-9402479 REVERSE | Aliases: F2P16.21, F2P16_21; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=8e-56) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1; ">
      <seq>gtatctctttttctctctcatggtgatggtatcatctccgccacaatttttatcggaggaccgccggtgatcggtgtttttctccgtctcctcaacattttgattctttcggtatccatatttttcttcatttatatatatatatatatatatgtatatccttgttgttcttgcaaagtttagctctgatattctgcgttgtagatccgtgttctactttttcgtttaaattcatatggatcgggttacttatggatccgtttagatcttcttagattttggtgaatgaccttttgtggtgataactagtaagcagacttttcttggaaatggcttccgtgggcttagcacctacatcgggtttgagagaatccagtggccataatgctggggtagataggttgcctgaggagatgaatgacatgagaatcagggatgataaggaaatggaagcagcaattgttgacggtaatgggactgagacaggccacataatagtgacaactattggtggtagaaatggccagccaaagcagactattagttacatggctgaacgtgttgttggacaaggatcctttggggtggtgtttcaggcaaaatgcttagagactgntgaaactgttgctattaaaaaggttcttcaagataaaagatataanaaccgagaattgcanacaatgcgccttcttgaccaccctaatgttgtgtctctcnncactgcttcttttccacaactgananggatgaactgtatcttna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="47989" stop="45271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47689" g_stop="47407" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47406" i_stop="46483" i_length="924">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46482" g_stop="46321" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="443" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46196" g_stop="46104" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="536" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45919" g_stop="45860" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="596" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45735" g_stop="45569" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="762" r_length="166" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U591901" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47689" e_stop="47407"/>
          <exon e_start="46482" e_stop="46321"/>
          <exon e_start="46196" e_stop="46104"/>
          <exon e_start="45919" e_stop="45860"/>
          <exon e_start="45735" e_stop="45569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTGGTAATTCGTTTTTGTGATTTTATAAATTAATTGTTAAAACTGGTTGTGTTATTTATTTACCTATTTTGAAGCCGTTTTTTGGAATTGGTATTTTTATAAATTCTGTGATTTTCTTGTTCTTTATTTTCTGTATTTATTTATTTGTTGAATACCTGATAATATTTGCACAGCTGCCCTTGCTTTTTCGATTTTTTTTCATGAACGGGAAGATAATTTTGACTTAATTAATTCTCAAATCTGTGTTTATTTTTATGTGGATGCTTAGGATTTTCTTTGTTGTTTTTGGAGAAATAATTGTTGGATTTTGGTGTGGTGCCTTATTTTCAAATCGGAGTTATCTCTGCGGTTGTATTTTTTATTGTGTTGGGACAATTGTATGAGCTGAGGTCGCATATGTATCAACTGTTTGTGCTGTAAAATAAATGTTTCTTTGGTTGAAACTACTTTTTTTCGTCTCATGAGATTTGATTTAATCTTGTGCTGATATTTCAACATTCTTTTCTGTTGCGCGACGAGCTGCTGCGTGTATGAGAAAAGTAGGCAAGCTTGTTCTTGATCTTGAATTTTAAATTCCCTACTTTACGATGGAACGATGGGGAATGAGGCGAGATAAATTGCAATTAGCTTAACTAAAAAGCTAGATTCGGAAGATTTCCAATCTGGACAATCAGCTAAACTTTTTAAAGAACTTTCCTGGACAATCAATTGGAAACACATTAAGTTAGCAGGGTTATCTTGTGTTTGAGTGCATAATTTCATTTGTCTAGAGTTGTTTCAATGTACAGTCATGACTAGAGATATATGGATGTCATTCAATCCAACTTTTTATTGGATGTTTTTCCCATAATTATTTCTGTAAGTACTATGATATGATATGATGTGTGTGATCATGCTGATGTTCCCATTTTTTTTTATGTTGGTCAGGTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAGGTCTGAATATTGAAGAGCATAGCCTTTTTGCTATTTGTCCTTATTTTATTGGATCCTCCTTTTTTGTGGTGATTTCGTTGTCCTTTTCAAGTTTGTTCATCAGATTTAAACTGTTCATTTGTAGGAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGGTAATGTGCTCTGTCACTCTCTTCCATTTTAATTCCTTTTTTGTTCTGTTGGTTTCTTGATATGGTTCCAGAGTTTTCTCTTCATCAGTTGATTAAGGGTAGACAAGTAAAATGATTATATAATAGACATATGTTCTTATTATTGGCCAAATTGTTGCACAATTTCACTTGGTTTTTATTGCAGACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAGGTATATTATTTTATTTTGTTCATTACAGGTGCCATTGTCTATTTATGCTTATCAATATACCCTTCATACACCCATAGGAAGTTATATGTGCATAATTTTATGATTTTCTTATTTGGTTCCGCAGGCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAA</genome_strand>
        <mrna_strand>GTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTC-T-TAGATTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG............................................................................................................................GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG........................................................................................................................................................................................ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG............................................................................................................................GCAAAATGCTTAGAGACTGNTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAANAACCGAGAATTGCANACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTC-NNCACTGCTTCTTTTCCACAACTGANANGGATGAACTGTATCTTNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570967" ref_strand="+" ref_description="SGN-U570967 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147792200|emb|CAN62034.1| (e_value=3e-72) hypothetical; (*ATH) AT5G26760.1 (e_value=2e-53) | Symbol: None | expressed protein | chr5:9403601-9407304 REVERSE | Aliases: F2P16.20, F2P16_20; ">
      <seq>tcggaacaatgtttaattccctcttcacatggatatcatcatcgtccttggcatttatatatgggcatgatgaaagcaataacgaggagtatttgtctatcaatggaagagaatatcctcgcaaaattgtgttatctgatggccggtcaactgagattaagcagactctagctggctgtcttgctcgagcattgccgggattggttgctgaccttaggctgcctgtaccgatatcaactttagagcaaggaatggttctcctcttaaatacaatgtcttttgtggatccactccctgcattccgaatgaagcaatggcaacttattgtacttctgtttcttgatgctctttctgtatgtaggatacccacactgactccatatatgacggggcgaaggacttcgtttccaaaggtgcttgatggtgctcagataagcgcagcggaatatgagatcatgaaagatctgatcattccactaggtcgagtgcctcagttctcaatgcaaagtggaggctagtttgacatgaaatagctgttgtggaccctctcctataaaccttcatggtagaaagaggaactgcacagagctgttgtttaatacaatttacagcaagtcctctaatcctgataggagttgattttgccacctttccaccagcaacatatcttcgtcctgtcattatatcctcttgttgaaacattgtttagtttggcaaggtttgatatcatgtttactgctgtgatccctctatcttggagactagtgatatggaaactgtgattccacttctttagtgtgtgaagatttggtcaatcatttttacctacttgtgcagtcatgtaaaaatcctcagatgtgttctgtgaggtgtgaatataactttaaaatagaactattatttttctgtgttttaatccaagaactgtttgtctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="58791" stop="53832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58491" g_stop="58238" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58237" i_stop="57407" i_length="831">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57406" g_stop="57248" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="413" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55217" g_stop="55056" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="575" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55055" i_stop="54494" i_length="562">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54493" g_stop="54132" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="936" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U570967" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58491" e_stop="58238"/>
          <exon e_start="57406" e_stop="57248"/>
          <exon e_start="55217" e_stop="55056"/>
          <exon e_start="54493" e_stop="54132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAACAATGTTTAATTCCCTCTTCACATGGATATCATCATCGTCCTTGGCATTTATATATGGGCATGATGAAAGCAATAACGAGGAGTATTTGTCTATCAATGGAAGAGAATATCCTCGCAAAATTGTGTTATCTGATGGCCGGTCAACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATGGTATGATTACATTTTAAGATATTACCTTCCCCTTGTCAAAGCTCTTTTAGGATAACAGTGGAAGTTGTCAAGTCAATGACTTCTGAATGCTGTCAGGAGACATTAAGTGGTTGCCTTTTTTTGTGCAGCTAGAATCAATTTTAATTTCTTTTGTTTTTATGTTGTATTTGGAAGCAATTTTAGTCTCATGGTTTTGTTTTGGTTTAGGATTTCATTTCCCAGTAGGAGATAACTTTAAATATGCTATTAAATGTTGCCAGTACTGTGCATTGCATGAAGTTGCAAAATACAAGAGGCTTGTAAAGGATTGTCTAAACTACCCGAAAGTCCAAATTTAGGGTTCTCTCTTTTCACTCAGCCTCAAACAATCGACATTTTGTCATGGGGGTTGGGGAGGAAATCAATACAAGTACACCACCTATAATTTTGATGGAATGATTCTGCCAAGTGCTGTATAGTTGGCTGGGGGAGGTGATGGGATGACATTTTGTTTTCTATGACTCTGGAAGTTGCTCACGGTTTTCTACCATATGTCATTTTTCATTGTTTTTACTTATTCTTAAGTTAAGAGAAGAAATGAGTTTGTATGATATATTATCCTCATTGGCTCCATTATACTTTTAAGTGAGGTTTGTGTGCATTTCCAAAATCTAGAGGAGGTTCTTTGATGTGCTTAGAACCATCCACTGAGACTTTTCCATGGGTGTGTTGGCTTGTGATGGTGTAGTTAGGTAGACGAGGGTGTTTTTGGTTTAAGGATATCATTGCATGTCATGACTAATCAGTAATAATCATCTGTGAGGATGACTCTTCTTTGTTTGACATGTGCAGGTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAGGTAGAATTTTGTGATCATAAACTTCTATGTTCTCATGCAATTTTCTTTCCTCTATCTCACTCTTTAACATTTGTTCTCAGGAATCCCTTCCATCCCCTCCCCAGGTCTAGTTAGTCCTTTTAAATCTTCACTAAGATTTGCCACCTTCCAGAATTATATTGGACATAGATGCCTATATTTTGATGGCAGCATTTTTCACTAACTCGAGCTTGAATATTTGGTAAATGCAATTTATTAGGGCACTAGACCTATATATGTGATAGACATTACTTTTTCAGTTCTTGCTTCATGTTACTTAGAAAGGATCAACTGTTTTTTAGATGTTGACTATATTGTTTCCAAAAAAAAGAATTGAAACATGTTCCTTAGAGTGTGATTGTGTCCTAACTGTTCTTTGGAGTTTTTGTTTGTCCCATCTTCTGGAAAACTACAGTTCCAAAACATATTCCAATCATTTCCCCTGTTGCTTCTTCTGGGAGGCGATCATCTTTGTTTTTAAGCCTCGGGGCTCGGTCTAGTGATAAGAGTACAACGCGAGATGTGTGAGTTTCAACCTTGTAGTTCGATATTTAAGTGGAGAAGATTATATGGGCAGGCTCAGTTTCCGCCAAGTTTCAGACCATGTGCTGTTGAACTTATTTTGATGAAGTCCTCTTTTTTTGATAAATTGTTTTTTCCTTGTTTTACTTATTACTCTCAAGTTTGCTAGGCAACAGGGAGACTCACCTTGACCACCTTCTTTCTTGTTCTTTGGTATGCAATTTACTCCTCCTCTTAAATGAAACCATTATGGGAGATGGGATGTACTATTGAAATTCCAAGAAGATGCAGGAGATTTGATGCAAAAATGTAGAGCTTGGGTAGGATGAACTTTTAAATTCCATTACATGTGTTTATAGTCAAATATAACCGATTACTTATACTGGAAGAAAATGAAATGGTTATGTATTTTTAGTGGAAGGCATATAATAACAGCAGTTTCAAAATGGCCACCTGTAGGTAGGGAAAAGAAGATCTAATTACATGGTACACATGCTGTTTTGTACCCTCCTGCTTGCCAGAAAACATTACCAAGACTACGCTAATAACAGTATAGCTGGCAAACAGAAGTGTATTCCTTCCTTCGGGTAGCGAACAAAGTTGTTTGATGAGTCCGCATTGAAGTTGTATTGTTGTCAACGGTAAAATAGAAAGTTGTGAAGTTGTCTTGTGGCTGGCTTTTACTGAGAAGTTCAGTGTGTTATAGTTGTTCTAGCTTAGCTGTTCTTGTTCATCAAGCTGAAAACTGACAGATTATTAGGGAGGTGCGGTAATAACCTCCAATGTTCCGCTTATAGTTGAACTTGGTTTTGCGGAATTTTCATGAGGTATATGGCAGCTCTCGAGGCTCGGTTGAATGCTATAAGCTTAACGAGCAAGCTGTCCAATTTTTTTAACTCCACTTGAATATCACTTTACCAACCTTTCACAGATTTGCTAACAAGCATGCATGCAGTACTAGTAATTATATGTGAGCTAACATAGTTCGAAATGTTTTTGTTGAAAATCAAGAGAACCTGATTTCATTTGCTACCCTTCCACAGAATAACTAGTATGCAGGATAATAGTTGTACTCGAGCATACATGGTTGACAAATGTCTTTATGTGAAAATCGAGTGAATTAACAGTATAATGTGTTTAGATTCATTGAAGTAAAGTAAGAGAAGATTAGTGAGTATTTCAAAATATTCCCTTTGATACTGCTGGATATATTTTTATATAGTAGTGGATGGAGTGTTTGCCTACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTTGTTAAGATAGAAGATATGACTATTTATCATATCGGGACGTAACCTAAAATTCATCTATAATGGGGTTTTTCTAGTACATTAATGCACTAACGTATCTTCTTTCCATTTTCCCCTAGTTTTCCTGCATAAGACATTAATAGTTTTTTGACTCAAAGAAGCCAGGTGGACTGAGATCTCCTTTTGTTGACTTTGGCTAAACAGGTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAGGTTGTGAAAGTAGACTTGAAAGTGTGCACATACCGCAAAATTATATATGTTTGTTGCAACTTCTCTTCATATCTGCTTATGTTATAGAATTTGCTATGTTGTCAAGACACTGATGATTGATGATAAGTGAAAAATGTAAAGTAAGTATTTACTCCATTTCCCTCTGGCTTTTTTAAAAAAATTATGACAGCTATCGTCTATGTGGAGTAAATTAGTTTTTTTAACCATGGCAGTTTACTTTTTAACTTGTGATTTGTAGTATCCTATGAAGTCTTTATATGCACAAGATTTATTACTCTAACTTAAGAAATTGATGTCTGAATTTGTATTGGAAAATTCTAAATGCTTAAGTAGTCATCATAGAATTAGGTCATTGGTTTAGGATATAGTAGCAAATATGTTTTGCTTTGATTGGAAGTGTGGAGGTTACTAGTTTTGTTGTCATTTCATTGTATTGTCGTGAAAATAATTGATCAGAATACAACCCCTCTGCTTATTGCATGACTAGTTCAATTATTAGCTGCAAAATTTACAAGCTTTAATGAGTTCTTCTGTGTAACAGGAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCC</genome_strand>
        <mrna_strand>TCGGAACAATGTTTAATTCCCTCTTCACATGGATATCATCATCGTCCTTGGCATTTATATATGGGCATGATGAAAGCAATAACGAGGAGTATTTGTCTATCAATGGAAGAGAATATCCTCGCAAAATTGTGTTATCTGATGGCCGGTCAACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTT-AATCCAAGAACTGTTTGTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581773" ref_strand="+" ref_description="SGN-U581773 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gcaagttgatgccttgcagttgcgttctggagaagaaacagaaaaatcggataagaacactagatttttgaaggtggacaaatttaattctggagaagtgtcttctggtccttcccaacatgatgtcaagaacaaaagtgtcctaattatgtctgatgacggaaggaaatatgcatcacatggtgaacatgataagctcaaatcttctttaaaatcttcaaattccaaaaaaatgtctcggtcagtcacttgggctgatgaaagtatcgatggtggcattggcaagaaaacagagagctcatccaaaatatcagaatatgagagtcaagcttatgggggatcagcctctactgatatggaagagaatgatgattcatatcggtttgaatctgcagaagcctgtgcagcagcactaagccaagcagcagaggctgttgcctcaggttctgatgttcctgatgctggtatgacattttcattgatcctccttattaggagatttgcaagtcatactctctttgcatctaattgcttttgagttctgttgcatgtgatatttagtgtccaaagccgggattgtaatattgccaccttcacaagaagtggatgaagcaatacttcaggagactgatgagatgcttgatttagaaacagctccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="59712" stop="58451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59412" g_stop="58751" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U581773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59412" e_stop="58751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTTAGTGTCCAAAGCCGGGATTGTAATATTGCCACCTTCACAAGAAGTGGATGAAGCAATACTTCAGGAGACTGATGAGATGCTTGATTTAGAAACAGCTCCTTTA</genome_strand>
        <mrna_strand>GCAAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTTAGTGTCCAAAGCCGGGATTGTAATATTGCCACCTTCACAAGAAGTGGATGAAGCAATACTTCAGGAGACTGATGAGATGCTTGATTTAGAAACAGCTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564530" ref_strand="+" ref_description="SGN-U564530 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147792200|emb|CAN62034.1| (e_value=2e-66) hypothetical; (*ATH) AT5G26760.2 (e_value=6e-50) | Symbol: None | expressed protein | chr5:9403683-9407304 REVERSE | Aliases: None; (*SWP) sp|Q5RA37|RPAP2_PONAB (e_value=8e-11) RNA polymerase II-associated protein 2 OS=Pongo abelii GN=RPAP2; ">
      <seq>tttcaaagcctacagccgccatttgtagagcttacagagacctgattccttcgttgttcttgggggcgctgtagagagattcaattaagttgatgatttagggtggaattaccagtaccttttttcttttaagtacttcggacgagttctctaatggcaaaaggagaagccgtcgctgttaaagatgctgtccacaaattacaactctgtcttcttgaaggcatcaaagatgaaagccaactcattgctgctggatctctgttgtctcggagtgattatcaggatgtagtgaccgaacgatcaattgccaacatgtgtggttatcctctttgcagcaattctctgccttctgaaaggtctcggaaaggacattacagaatatcattgaaggagcataaagtttatgatcttcatgaaacatacatgtactgttcaacaaattgtgtagtcaatagcggagcatttgctggtagcttgcaggatgagagaagctctacactgaatccagcaaagcttaatcaagtcctgaatctatttaaggggttgcatttgcattccttagatgatgtgaaggaaaatggagatcgaggatcttctaagttgaagatccaggaaaaagtggatttaaagggtggtgaagtttcattagaagagtggatgggtccatctaatgcaattgnaaggctatgttccacagagagatcgaagtgtgaatccagcactgntgaaaaacattaacaannnatccnagatnnnatgccanantccnnangagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="63244" stop="59497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62944" g_stop="62812" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62811" i_stop="60404" i_length="2408">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60403" g_stop="59795" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="743" r_length="610" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59794" i_stop="59621" i_length="174">
            <donor d_prob="0.880" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59620" g_stop="59582" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="779" r_length="36" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U564530" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62944" e_stop="62812"/>
          <exon e_start="60403" e_stop="59795"/>
          <exon e_start="59620" e_stop="59582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAGCCTACAGCCGCCATTTGTAGAGCTTACAGAGACCTGATTCCTTCGTTGTTCTTGGGGGCGCTGTAGAGAGATTCAATTAAGTTGATGATTTAGGGTGGAATTACCAGTACCTTTTTTCTTTTAAGGTACGAGAATCACTTGTAACTAATGATTGTTAACCTTTTTAAAATCTTGATTGGTAAGAACCCTGTTCAAGTTTCTTTTCGCTGTAATTGAGAATCGTGATATAGAAGTTGGGTTGCGGAGTGTGAAGGCAATGGAACTTAACATAACTATATATGACCTTACTTTTTAGTACTAGGCAGTTATGCTGATTTCTGCACGTAACGTGTTTGATAATATGCCGCTTGCAGATTCTTGGTTCAGTCATTTGTTATTTGTTTTTGTGGAGATTCTTGGCTTTTCCCTTTATCATCACATTCTTAATTTTGTTGCAATGATAATGAACAAAGCAAACGTAAGTATTTCTCCTAGCAAAACTTAATATCAGCCCATGATTGATCGCCTTAAAATCTTGATTCAAAGGAACCCTGTCCAATTTTCTTTTTTCCTTTCCTTTTCACTGTAATTTAGAATCTTGATAAAGAAGTAAGGTTTTTCCTTTTCTCTGTTGTTCAGATTCTTGATAAAAGAAGTAAGGTTTTTCCTTTCCTTTTCAGAATCTTGATAAAGAAGTTAGGTTTTTCCTTTCCTTTTCACTGTTATTCAGAATCTTGATAAGGAAGTAGGTTTTTCTTTTCCTTATCACTGTTATTCATAATCTTGATAAAGAAGTAAGATTGTGGAGTAAAGGCAATGGAACTTCACATAACTATATATGGACTTAACTTTTTAGTATTATTAGGTAGTCATGCTGATTTCTGCAGGTTACATGCTTGATGATATGCCAGTTGCAGATTCTTGGCTTAGTCATTTGTTATTTGTTTTTTTTTTGTGGAAATCAGAGCCATTACGTCATTATTCTTAGTTTTTCCCTTTGTCATCACATTCTTGATTTTGTTGCAATGATAATGAACAAAGCAAACATAAGTGTTTTACTCCTACCAGAACTTAACATCAACGAATGATTAAAGAAGAAGGGTTGCGGAGTGAAGGCAATGGAACTTCACATAAAAATACATGGACTTCACTTTTTAGTATTAGGTAGTCATGCACGTAACATGTTTGATAATATGCCGCTTGCAAATTCTTCGTTCATTCATTTGTTATTTGTGTTTGTATTTATTGGTATTCCTATTTTGAGTACTCTTCACTTTTCCCTTTATATTCACATTCTTGAATTTGTTGCAATGATGATGAACAAACATCGGTGTTCTACTCCCAGCAAAACTTAATATCGACGAATGATTGATAGCCTTAAAATTTTGATTGAAAAGAACCCAGACCAAGTTTCCTTTTTCCTTTTCTTTTCGCTGTTATTCAGAACCTTGATAAAGACGTAGGGTTGCGGAGTGATCTAGCCTCCACTATATACTCACATAGACAAAAAAAACCTTTCATGCTGCTTAGCGCGCCGCACACAAGCCAGAATAGATTGCAGGTCCAACCTCTTCGTTCTAGTTTCATTGTCGTCACTTCTTGAATTGATTGGATTAAATTGCTAATTACTTTTATGACCTGTCATTCCTTTTTTCCTTCCAGAGTTGGGGTTTTTAGTCAATGAAGTTGGTTTTTTCGTCCAATAATAGTATGGTACAGTGACTTTTGAAACTTGAAATGGGTGATGATTGAATATAACTCAGCTTTATGGGTGGGGCTAAATATAATTTTAAAATATGATTATAAGGATATATTTGTTGAAAAAGCATAATGGAGAACAAAAATAATTTATTATCGACATTAGAAGGACAAATAACCCTTTTTCTGATAGCTGATGAATTGGCCCTAAGGCTAGAGTGGGGTTTAAGTAATTTTATTAATCATTGTTAAGATGAATTTTCCTTTAGTCAACTCATTCTTCCCCTTCAATTGCACACGTGAAGTTCCACGATTAGGGCAATGGAACTTCACATAACTATATATGGACTATACTTTTTAGTATTAGGTAGTTATGCTGATGTCTGCAGGTAGCATGTTTGATCGTATGCCGCTTGGAATTGCTTGGTTCCGTCATTTGTTATTTGTGATCGCATTAATTTGTACTCCCTGTTTTGTGAAATATTAACCTTTACATCATTACACTTCACTTCTCCCTTTACCATCACGTCTTGATTTTGTTGCGATGATCATGAACAGAGCAAACATAAGTGTTCTAGTCCTAGCAAAACTTAATATCAAGAGACTTTGTGTAAGGCACTGTAATCGGAATGTGCTTGCGTATAACATTCTTACTGGATCTGCCACATAAATTGGTACGAGGGAGTAACATTTATTGGTGTAAGATCTCATATGGTATATTAGATGTTCTTTTGTATGCTTATGATATCCATGGTGAATAACATGCAGAATGAGTGAGATTTATTTTTGATATCTAATACCTATCTCATATCATGTACTTTATTAACTTATTGTAATAAATTCTATTTGTCATCAGTACTTCGGACGAGTTCTCTAATGGCAAAAGGAGAAGCCGTCGCTGTTAAAGATGCTGTCCACAAATTACAACTCTGTCTTCTTGAAGGCATCAAAGATGAAAGCCAACTCATTGCTGCTGGATCTCTGTTGTCTCGGAGTGATTATCAGGATGTAGTGACCGAACGATCAATTGCCAACATGTGTGGTTATCCTCTTTGCAGCAATTCTCTGCCTTCTGAAAGGTCTCGGAAAGGACATTACAGAATATCATTGAAGGAGCATAAAGTTTATGATCTTCATGAAACATACATGTACTGTTCAACAAATTGTGTAGTCAATAGCGGAGCATTTGCTGGTAGCTTGCAGGATGAGAGAAGCTCTACACTGAATCCAGCAAAGCTTAATCAAGTCCTGAATCTATTTAAGGGGTTGCATTTGCATTCCTTAGATGATGTGAAGGAAAATGGAGATCGAGGATCTTCTAAGTTGAAGATCCAGGAAAAAGTGGATTTAAAGGGTGGTGAAGTTTCATTAGAAGAGTGGATGGGTCCATCTAATGCAATTG-AAGGCTATGTTCCACAGAGAGATCGAAGTGTGAATCCAGCACTGTTGAAAAACATTAACAAAGGTACGAGGATTTCAATGATCTAAACAGGTATCTGTAGTTGATAGGAGAATGCTTTTCGAGCTTATGCTTGGTGGAGTCGCTTCATTTGAAACTTTAGAATATAGTGGACTTCTTATTCTAGCTAATCTAAATTTATGCACTTGTTGATAATGACAAATACTGGTAATTTTGCAGGATCCAAGAATAAGCATGCCAGACTCCAAGATGAGAAAA</genome_strand>
        <mrna_strand>TTTCAAAGCCTACAGCCGCCATTTGTAGAGCTTACAGAGACCTGATTCCTTCGTTGTTCTTGGGGGCGCTGTAGAGAGATTCAATTAAGTTGATGATTTAGGGTGGAATTACCAGTACCTTTTTTCTTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCGGACGAGTTCTCTAATGGCAAAAGGAGAAGCCGTCGCTGTTAAAGATGCTGTCCACAAATTACAACTCTGTCTTCTTGAAGGCATCAAAGATGAAAGCCAACTCATTGCTGCTGGATCTCTGTTGTCTCGGAGTGATTATCAGGATGTAGTGACCGAACGATCAATTGCCAACATGTGTGGTTATCCTCTTTGCAGCAATTCTCTGCCTTCTGAAAGGTCTCGGAAAGGACATTACAGAATATCATTGAAGGAGCATAAAGTTTATGATCTTCATGAAACATACATGTACTGTTCAACAAATTGTGTAGTCAATAGCGGAGCATTTGCTGGTAGCTTGCAGGATGAGAGAAGCTCTACACTGAATCCAGCAAAGCTTAATCAAGTCCTGAATCTATTTAAGGGGTTGCATTTGCATTCCTTAGATGATGTGAAGGAAAATGGAGATCGAGGATCTTCTAAGTTGAAGATCCAGGAAAAAGTGGATTTAAAGGGTGGTGAAGTTTCATTAGAAGAGTGGATGGGTCCATCTAATGCAATTGNAAGGCTATGTTCCACAGAGAGATCGAAGTGTGAATCCAGCACTGNTGAAAAACATTAACAANN..............................................................................................................................................................................NATCCNAG-AT-NNNATGCCANANTCC-NNANGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580458" ref_strand="+" ref_description="SGN-U580458 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157346988|emb|CAO17370.1| (e_value=1e-126) unnamed; (*ATH) AT4G10710.1 (e_value=2e-104) | Symbol: None | transcriptional regulator-related, similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) (Homo sapiens) | chr4:6601985-6606350 REVERSE | Aliases: T12H20.3, T12H20_3; (*SWP) sp|Q7X923|SPT16_ORYSJ (e_value=2e-111) FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16; ">
      <seq>tttttcgagcaatgcaagatcagtcagagtcaaatgtgcccgttgttggacacatcgcgagagaagctcctgaagggaatcttttagagacatggactgagaagctaaagaatacacaatttcagctcagtgatgtaactaatggattctctgacctgtttgctgtcaaggataccgctgaaattatgaatgtgaagaaagctggctatctgacttcatcagtgatgaagcactttgtagtcccaaagctagaaagggttatcgatgaggagaagaaggtgtcacattcttcactaatggatgatactgaaaaggtcatactggaacctgcaaagattaaggtgaagttgaaggcagagaatgtcgacatctgttaccctccaatttttcagagtggaggagagtttgatctgagaccaagtgcatcaagcaatgatcagaatctttactatgattcaacaagtgtgattatctgtgcaattggttctcgatataatagttactgctcaaatgttgctcggacctttctaattgatgccaatccaatgcaaagcaaggcgtatgaagtccttttgaaggctcatgaggctgcaattggagctctgagaccaggaaataaggctggagatgtctaccaagcagcccccaatgtggttgaaaaggaggcacctgaattggttgcaaatttgacgagatctgcaggaactggaattgggcttgagttccgtgaatcagggttaaacctcaacggcaagaatgatagaatgctgaaatctgggcatggtttttaatgtgtctcttgggtttcagaatttgcaaacagagtctaaaaacccccaaaactgaaaaaatttgtgttttggttgccgaaacagttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="66826" stop="68305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67126" g_stop="68005" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U580458" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67126" e_stop="68005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGAGCAATGCAAGATCAGTCAGAGTCAAATGTGCCCGTTGTTGGACACATCGCGAGAGAAGCTCCTGAAGGGAATCTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCTCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTCCGTGAATCAGGGTTAAACCTCAACGGCAAGAATGATAGAATGCTGAAATCT-GGCATGGTTTTTAATGTGTCTCTTGGGTTTCAGAATTTGCAAACAGAGTCTAAAAA-CCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTAT</genome_strand>
        <mrna_strand>TTTTTCGAGCAATGCAAGATCAGTCAGAGTCAAATGTGCCCGTTGTTGGACACATCGCGAGAGAAGCTCCTGAAGGGAATCTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCCCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTCCGTGAATCAGGGTTAAACCTCAACGGCAAGAATGATAGAATGCTGAAATCTGGGCATGGTTTTTAATGTGTCTCTTGGGTTTCAGAATTTGCAAACAGAGTCTAAAAACCCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCCGAAACAGTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581583" ref_strand="+" ref_description="SGN-U581583 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147775766|emb|CAN64798.1| (e_value=0) hypothetical; (*ATH) AT4G10710.1 (e_value=0) | Symbol: None | transcriptional regulator-related, similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) (Homo sapiens) | chr4:6601985-6606350 REVERSE | Aliases: T12H20.3, T12H20_3; (*SWP) sp|Q8H6B1|SPT16_MAIZE (e_value=0) FACT complex subunit SPT16 OS=Zea mays GN=SPT16; ">
      <seq>gatttgcaaacagagtctaaaaaccccaaaactgaaaaaatttgtgttttggttgctgatacagttgttattggtcaaaatgctccagaagtggtgacttctatgagttctaaagccgtaaaagatgtggcttactcattcaacgaggatgaagaagaagaggaggagcagccgaaggtcaaagctaagcctgttgctgccaatggactctcatccaaggctacacttagatcagttaaccacgagacatcaagggaggaactaagacggcaacaccaggcagaattggcccgccaaaagaacgaagaaactgcacgaaggctcacaggaggaagttctgggggtgcagatagccgtggttctgcgaaagccactggagatttgcttgcatataagaacattaatgatctgccacctccaagagaattgatgattcaggttgaccagcggagtgaggctattcttttacctattcatggtaccatgattccattccatattgccaccgtgaaaagtgtatctagtcaacaagatactaaccgtacctgctatatccgaataatgttcaatgttcctggcactccattcactcctcatgacacaaatactctaaagttccagggatcaatatatgttaaagaagtttcatttcgttccaaggacccaaggcacatcactgaagtggttcaacaaataagaaccctccgcaggcaggttgtctctagagaatcagagagagctgagagagcaactttagtaacacaagagaaacttcaagttgctggagccaaatttaaaccaatcaagttgtcagatctgtggattcgtccagtatttggtggtcgcgggagaaagcttcctggtactctagaggctcacacaaatggattccggtatggaacttcaaggccagatgagagagtggatgttatgtatggtaacatcaaacacgcattcttccagccagcagaaaaggagatgattacagtcctccactttcacctgcacaatcacataatggtggggaacaagaaaaccaaggacgtgcagttctatgttgaagtgatggacgttgtgcagacaattgggggtggaaaaagatctgcttatgatcctgatgagattgaggaggaacagcgtgaaagggataggaaaaacaagattaacatggaatttcaaacatttgtgaataaggtaaatgacctctggacccagcctcagtttaaagggcttgatttggagtttgatcagccgttgagagaacttggattccacggggtaccccacaagtcaacagcttttatagtcccaacatctagctgccttgttgagctcgtagagacaccatttgttgtgatcactctctgtgagattgagatagtcaacttggagagggttggtctcgggcagaagaattttgacatgacaattatattcaaggacttcaaaagagatgttatgcgaattgattctatcccttcaacttctcttgatggcatcaaggagtggctcgatacaactgaccttaagtactatgagagcaggctgaatctgaactggcgtcagatactgaaaacaattactgatgatccggaagagttcatagagaatggtggatgggaatttttgaatttagaaggtactgattcggaatctgagaactcacaggagtctgatcaaggatatgaaccttcagatgtagagcccgtctcatcagacgaggaagatgatgaaagcgcatcactagttgagtcagatgatgatgaaggggaggactctgaggaatattcagaagaagaagggaaaacatgggaagagctggaaagagaagcaagcaatgccgacagagagaaaggggctgaatcagacagtgacaatgataggaagaggaggaatatgaagccttttgggaaaggtcgtcctccagagagaagaaatctctctagcaacatttccaagagacccaggtttaaggtaaagagtgcagtagcacgtgcttaactgtcctaggatattagtatatgctgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="67636" stop="70264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67935" g_stop="69964" g_length="2030"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2031" r_length="2031" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U581583" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2030</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67935" e_stop="69964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGCAAACAGAGTCTAAAAACCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTATTGGTCAAAATGCTCCAGAAGTGGTGACTTCTATGAGTTCTAAAGCCGTAAAAGATGTGGCTTACTCATTCAACGAGGATGAAGAAGAAGAGGAGGAGCAGCCGAAGGTCAAAGCTAAGCCTGTTGCTGCCAATGGACTCTCATCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCAGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTT-AGGTAAAGAGTGCAGTAGCACGTGCTTAACTGTCCTAGGATATTAGTATATGCTGCATA</genome_strand>
        <mrna_strand>GATTTGCAAACAGAGTCTAAAAACCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTATTGGTCAAAATGCTCCAGAAGTGGTGACTTCTATGAGTTCTAAAGCCGTAAAAGATGTGGCTTACTCATTCAACGAGGATGAAGAAGAAGAGGAGGAGCAGCCGAAGGTCAAAGCTAAGCCTGTTGCTGCCAATGGACTCTCATCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCAGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTTAAGGTAAAGAGTGCAGTAGCACGTGCTTAACTGTCCTAGGATATTAGTATATGCTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578021" ref_strand="+" ref_description="SGN-U578021 Tomato 200607#2 [37 ESTs aligned] (*GB) gi|157346985|emb|CAO17367.1| (e_value=0) unnamed; (*ATH) AT1G09430.1 (e_value=0)  Symbol: None | ATP-citrate synthase (ATP-citrate (pro-S-)-lyase/citrate cleavage enzyme), putative, similar to ATP-citrate-lyase (GI:16648642) (Arabidopsis thaliana); similar to ATP-citrate (pro-S-)-lyase (EC 4.1.3.8) (Citrate cleavage enzyme)(SP:Q9... ; (*SWP) sp|P16638|ACLY_RAT (e_value=3e-91) ATP-citrate synthase OS=Rattus norvegicus GN=Acly; ">
      <seq>aggggcgctaataacattatcaaggaaaaatagttggattatgaaaatcaggcagcatcattattcttcccaatacagtatcttcccttgttaaaaacgcccaactacctactcccctgtccccacccccacctcagctcattcatctcactcaccagttgttgcctggttggtgaatacccacaattcttctaccttaagataattccataaatttcatagttctagatcttcgttttttgtaatcaattgcatacccaccaactgtttgtataattgtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagagtggcttggtagctttgaatctggatctagcaggagttgctgagtttgtaaaaacacgacttggtgtggaggttgaaatgggtggctgcaaggcacctataacaacatttattgttgaaccatttgttccccatgaccaagaatattacctttccatagtctctgaaaggttgggctgcacaattagcttttcagaatgtggaggcattgagattgaagagaactgggacaaggtcaagacaatattccttccaacggagaaacctatgaccctagaggcgtgtgctccactgattgctactctgcccttggaggtacggggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgcaaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggaagccaagctaaaagcggctagaatgcatatctatgtacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaggagaggaacttggagttccccttgaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcattatgtctgaagcataagtgccaaatgagaaagaagacttgtgttacattcttgcaattaagaagaaactttgttggatatttaatttgccttctgatattgttttgttacaaatgggacctttaaagaataatttgagatccttttgttttacctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78419" stop="83737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78719" g_stop="79149" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79954" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="608" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="80196" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="770" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80357" g_stop="80437" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="851" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80810" g_stop="80861" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="903" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1018" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1019" r_stop="1100" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="1196" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1197" r_stop="1298" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="82434" g_stop="82550" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1299" r_stop="1415" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="82641" g_stop="82757" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1416" r_stop="1532" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="83222" g_stop="83437" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1533" r_stop="1748" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U578021" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78719" e_stop="79149"/>
          <exon e_start="79778" e_stop="79954"/>
          <exon e_start="80035" e_stop="80196"/>
          <exon e_start="80357" e_stop="80437"/>
          <exon e_start="80810" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82550"/>
          <exon e_start="82641" e_stop="82757"/>
          <exon e_start="83222" e_stop="83437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCGCTAATAACATTATCAAGGAAAAATAGTTGGATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAA</genome_strand>
        <mrna_strand>AGGGGCGCTAATAACATTATCAAGGAAAAATAGTTGGATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG................................................................................GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG................................................................................................................................................................GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG..........................................................................................GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592706" ref_strand="+" ref_description="SGN-U592706 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346985|emb|CAO17367.1| (e_value=7e-93) unnamed; (*ATH) AT1G09430.1 (e_value=8e-93)  Symbol: None | ATP-citrate synthase (ATP-citrate (pro-S-)-lyase/citrate cleavage enzyme), putative, similar to ATP-citrate-lyase (GI:16648642) (Arabidopsis thaliana); similar to ATP-citrate (pro-S-)-lyase (EC 4.1.3.8) (Citrate cleavage enzyme)(SP:Q9... ; (*SWP) sp|P16638|ACLY_RAT (e_value=5e-48) ATP-citrate synthase OS=Rattus norvegicus GN=Acly; ">
      <seq>ccggtttaagagagagagagttgtcgttcgtttggattgtaagaaaaacagagtaatatggcgaggaagaagatcagagagtatgattcaaagaggcttctaagggagcatttgaaacgccttgctggcattgatcttcagatctgctctgctcaagtgacagaatctacagattttactgagttaacaaacaaagaaccatggctttcatcgacaaagctggttgtaaaaccagacatgctgtttggaaagcgtggaaagattggcaatttccttatgggtgtttttgatgtgtttcaagatctcgattttagtttcatagagatgaacccatttacgcttgtaaatggagagccttacccattggatatgagaggagagttggatgacacagcagccttcaaaaattttaagaagtggggaagcatcgagtttcctctgccttttggaagagttttgagccctaccgaaagcttcattcactctttggatgagaaaactagtgcctctttaaaatttacagttttgaacccaaaaggtcgtatctggacaatggtggctggaggtggtgcaagcgttatatatgctgatacagtaggggatttaggttatgcctctgagcttggtaactatgccgagtatagtggagctccaaatgaagaggaggttctgcaatatgctcgagtagttctagattgtgctactgccaatcctgatgggcgtaagagagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="78697" stop="82823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78994" g_stop="79149" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79778" g_stop="79886" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="265" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79887" i_stop="80825" i_length="939">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80826" g_stop="80861" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="301" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81151" g_stop="81265" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="416" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81412" g_stop="81493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="498" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82006" g_stop="82101" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="594" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82238" g_stop="82339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="696" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82434" g_stop="82523" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="786" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U592706" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78994" e_stop="79149"/>
          <exon e_start="79778" e_stop="79886"/>
          <exon e_start="80826" e_stop="80861"/>
          <exon e_start="81151" e_stop="81265"/>
          <exon e_start="81412" e_stop="81493"/>
          <exon e_start="82006" e_stop="82101"/>
          <exon e_start="82238" e_stop="82339"/>
          <exon e_start="82434" e_stop="82523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAAGTGAATTCCTTTTTTTTGTTTTAAAGAACTTAAGTTATTGAACTGTTGCTGTCGAATTGTAATGGAATTTCGGTTATGAGGTGTACTTTTGATGATCTTTTGCTAGTGGTTTTAGATCTATGCGTCTTTTTCTTATCTGGGTGTTTGTTGTTTGATCAGTTCAGTTCGAATCCTACTTCCCTTTGTTCCTCACTACTTCCTTATTCCCTATTTTTGTTATTCCAAATGTTAGAGTTGAATGATTGCTTCGTTGTTATGATGAAGTTCTGTAGAGGTCATGATGTATTTTCCAATTGCAAAGAATGATTCTTTTGTTTGTGGAAAGCTCTTGTTGAGTGGACAATCGTGTGTTGTAAGATTAGTTATCTACCTATTGTAGATTTACTTGGAAAGCACCTTTTTAAGCTACTATAGAGTCCTTTAATAAAAATGAGATGTACGTTACAAACTGAAAGAAGCTTGGCGTGCATCCGCGTTTGGTAAGATGGAAAATACTCTACATAAAATACTGATATTTGGTTACGTAAATTATTATCAAGGTGATCATTTGGACTATCTGACATTATTTGTCGTCATTTCCATTTATTTTTTCTCGCCAGAGTTCTCATGTTTATTTGGTTTTTGGTAGGTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAGGTGAGCAGAGGGCCAAGTATTTTGAATCTTTTACTGCTTCTTATGTGTTATAGTCATCTTACATGTGAATTTGTTTCTAGGTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAGGTTAGTTGGTTCAAAAAGTTTTAACTGTTGTTTCCTCCTCTAACAACTATTTGTTTAGACAAAACTGGTTAACTCTAGTTATTCTGGTAAATTCTAGAAAGTCAAGTTATAATTTTTTCCCCTGTAATAACAAGATTTTATTTGTTTATGTAACATAAAGGTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAGGTGATCTGAAATTTTTGTTTTTGTTTTATGCTTCTACTTTCCTTTTAGTCATCAGTCTCGATCAAGCCAGCATGATCTGTCAGTCATAATAGTTGGAATGGTTTTCTAAGAGCAAGGTCTTGGATAACAGACACTTAAAAAAAGTGTGTTATCATATTGTGTATTGCTGGCAATTCTTAAGGATTATTGTTTTATGTTGTATTATTGTGTAGCTATTTTCGATATTTGATCTAGTTTATATATATTGGTCTACTTATTGCTGGACTTTCACCTTTGTGTTGATAAATATTCTGACTTCGAAGATTAAGGCACTTGACTACTAACATCTCAACAACCATCATGATACTTAACCTAAGTTTCTGGTTGACTCAGGTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAGGTATGCCATGCTTTACGGTGATACATCTTTCTAGCATGCATTTATGTTATTTTTCTCTTTTTCTTTTATCTTTTGGTGCTATCTTTTAGATAATTGCCAGTGACTATACGTGGAAAACATAATTAAGTTTATTGTTATATAAGCAGATGAAGATGAAAATAAACTTTCTGTTGGTTTATGTTAAACATTGACCTGTTCTTAGAAGCTAGTTTTTTCATATTTTCACATCATTATTCTCAAATATTATTTCATTGATTATGCAACTCTGTCGCTTTGTCTTTGATCCCAGATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAAGTATGTGATTCTCACTTCTTTTCCGCATGTTGAAGTGCCTATTCTTGCTTCTTTTTTTCTCTCTCTTGGGAGAGTCTGAAAACAGTGTGTGTATTTCCAGATTTATTAAACAGTTTGCTATTGTATCATCCTCTGTGACTTGTCAGGTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAAGTAAGTTCAGTTATTTGTCTTTATCTAAGGGCGTTTTTGTTGCCTGAGTTATCAGATTTACTTGTTTATTCTTGTAGAAACTATTTTGTTAGAGAAGAAATTTTATCTTGGATTTTCAGTCATGAACTGTTATGGATACTGAACTACTGGAGGAACTTTATGCATTGCTTTAGAGATCCATTATATCCAAGAAAATCGTGCCTTTAAACAGCATTGAATGGTTTTTTAGTGATAATTTACATTGTTCACCATTTATTCTGTGCTGAAGCCGTGGTGCCATACAGACTTGAGGGCTTGGGGGTGGTTAGGGTTTGGGAAATCATCTTTTTTGAAATGCTGTTTGAAATTTTTTTAAGTCTTGAATGCTTCTGAAGGTTAAAAAGATTTATCCTTGAGCTATGGTGGCTGGCTATCATTCCTGCCAAACTTTCTGGTGATACTTGCTCTACTGGAATTGGAGTATAATATCTGCAGCTTTTCTGTTAATTCTGTCTTGTCTTGACATCTTGCAGACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACAGTAAGTATATTCAGAACTTGTGATGCAACAACTTGATGCAAGGAGATATTTTCTATCTTGTCATTATTCCTCCTGCATGAAATGTCAACACTAATAGCTTACTGCTTATATTCTCTGTTTTTGATGTCTTAACCAGGTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGATGTATGAACTTGACTGTTCTCTCTCCTGGTCAATATGCTCATGTAGTGTTTGTCCTATTTTAACTTAACCAGCGTTTGATTTGATGTTTTTAAAGTGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAAT</genome_strand>
        <mrna_strand>CCGGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG.................................................................................................................................................................................................................................................................................................ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA..................................................................................................................................................GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA........................................................................................................................................GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT..............................................................................................TGTGCTACTGCCAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580485" ref_strand="+" ref_description="SGN-U580485 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157346985|emb|CAO17367.1| (e_value=1e-24) unnamed; (*ATH) AT1G09430.1 (e_value=1e-26)  Symbol: None | ATP-citrate synthase (ATP-citrate (pro-S-)-lyase/citrate cleavage enzyme), putative, similar to ATP-citrate-lyase (GI:16648642) (Arabidopsis thaliana); similar to ATP-citrate (pro-S-)-lyase (EC 4.1.3.8) (Citrate cleavage enzyme)(SP:Q9... ; ">
      <seq>ggtaaatcctgatgggcgtaagacagctctgattgttggaggtggtattgccaacttcactgatgtagctgctactttcaatgggattattcgggctctcagggagaaggttggctgtgtgctattttttacacaaagttttttactttttctatacataagaggcagaaaataatgtttttcctttgaatccgaacaggaagccaaactaaaagcggctagaatgcatatctatggacgaagaggtggtccaaattatcagactggtctagcaaaaatgcgcgccctaagacaggaacttggaattccccttgaggtatgaaatatcacttggcgaaattcttattcctaagtgatacaatgactacacgtccctgaatttcaattatactacgtaatcctttgacatttttggaggtaacataaatactaaccacacatgccacagatgaagggatgttggagatcacaatttgcttttacttgatcctaggcattctgtttttttagttacatcttcccatgctatatcaattagcccgaccatggtgatgttactcataattacattcataagtaacttggtccatcttcatagatgtctgaggatcgtttgaggtcagacatcaagactacagcatgttccagttagaatatatgaacatggacttccaaagatgctgttaccagtattgttattaatacaccctacttcctaagttttcatattcaacgaaagtaagagataacgtataaaatttgtgtcgattctgctattgcaggtttatggaccagaggctacaatgacgggaatttgtaaaggggcaattgattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="82143" stop="83577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82442" g_stop="83277" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U580485" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82442" e_stop="83277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACA-GTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCA-ACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCAT</genome_strand>
        <mrna_strand>GGTAAATCCTGATGGGCGTAAGACAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATACATAAGAGGCAGAAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAACTAAAAGCGGCTAGAATGCATATCTATGGACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAAGACAGGAACTTGGAATTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAATGACTACACGTCCCTGAATTTCAATTATACTACGTAATCCTTTGACATTTTTGGAGGTAACATAAATACTAACCACACATGCCACAGATGAAGGGATGTTGGAGATCACAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCATGCTATATCAATTAGCCCGACCATGGTGATGTTACTCATAATTACATTCATAAGTAACTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAGCATGTTCCAGTTAGAATATATGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAACGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563367" ref_strand="+" ref_description="SGN-U563367 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147811594|emb|CAN68183.1| (e_value=3e-69) hypothetical; (*ATH) AT4G33420.1 (e_value=2e-41) | Symbol: None | peroxidase, putative, identical to class III peroxidase ATP32 (Arabidopsis thaliana) gi:17530547:gb:AAL40837;  identical to cDNA class III peroxidase ATP32  GI:17530546 | chr4:16084835-16086291 FORWARD | Aliases: F17M5.180, F17M5_180; (*SWP) sp|Q9SZB9|PER47_ARATH (e_value=2e-40) Peroxidase 47 OS=Arabidopsis thaliana GN=PER47; ">
      <seq>ggtcataaatagtatataaattactccacttttcaaatccctataactaaaacacataacgatgaaattgtcaactttgttcatcttatattttttcactgtttctacacttgcaaatgcatctcttaagattggttactaccattcaagttgcccaaatgcagaatccattgtcagaaaagcagtcaacaaagccgtctctcgtaaccctggccttggcgctggcattatcaggatgcatttccatgattgttttgttaggggatgtgatgcctcaatccttttggatccaactccagggaatccaacagaaaaagaacatccagcaaataatccaagcttacgaggctatgaagtgatcgacgaagcaaaaattgaactacaatctatttgcccagaaacagtttcatgttcagatatcattgcatttgctgcaagagatagtgcttttaagcttggaggcattagatattcagttccatcaggtcgtcgagatggaagagtatccattaaagacgaaccaaccgcaaatctccccccttccacattaaatgctggagagcttgaggaaaattttgcaaaaaaaggacttttctttagatgagatggtcacactttcgggtgcacattctattggaagatcacattgttcttccttttcagatagactttactctttcaattcaactcacccgcaagatccttcgatggatcctaaattagcccaacaattgatcaagagatgtccgcgtccttctaccactgatccaattgctccacttgacgttgatactccaaataggctggacaataagtactatctcaatttgaagaataagagaggagtgttaacctcagatcagacgctatggaacagtccttcaacggctaggatggcgaggagtaacgcgattcatggtgcgaattgggctcataaatttgctgatgcaatggtgaaaatgggatccatagaggttatgactgggatacagggagagatcaggaagaattgcagggttgtgaattaatctattaatacttcttttttttttgttcttgtaattgtatcatcaccttttttttttattcattttcaatgtcgataacaaagtaactgattcttttcaattgtcataatttaaatatattgatttaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="88461" stop="90337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88760" g_stop="89021" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89022" i_stop="89139" i_length="118">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89140" g_stop="90037" g_length="898"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="1159" r_length="897" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U563367" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1160</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88760" e_stop="89021"/>
          <exon e_start="89140" e_stop="90037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGGGTACGTCTCATTTTTTTAGAGAGTCAAACAATTTTTTCTTTTGATTTTGATTTTGTGCGATGAAATTAGTAAAATGTTAGTTCAACTGACAATATCTAACTTCATATAAATGATTCAGGGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTAGAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGAC-TTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGATCCAATTGCTCCACTTGACGTTGATACTCCAAATAGGCTGGACAATAAGTACTATCTCAATTTGAAGAATAAGAGAGGAGTGTTAACCTCAGATCAGACGCTATGGAACAGTCCTTCAACGGCTAGGATGGCGAGGAGTAACGCGATTCATGGTGCGAATTGGGCTCATAAATTTGCTGATGCAATGGTGAAAATGGGATCCATAGAGGTTATGACTGGGATACAGGGAGAGATCAGGAAGAATTGCAGGGTTGTGAATTAATCTATTAATACTTCTTCTTTTTTTTTGTTCTTGTAATTGTATCATCACATTTTTTTTTTATTCATTTTCAATGTCGATAACAAAGTAACTGATTCTTTTCAATTGTCATAATTTAAATATATTGATTTAAGAG</genome_strand>
        <mrna_strand>GGTCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGG......................................................................................................................GGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTACAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGACTTTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGATCCAATTGCTCCACTTGACGTTGATACTCCAAATAGGCTGGACAATAAGTACTATCTCAATTTGAAGAATAAGAGAGGAGTGTTAACCTCAGATCAGACGCTATGGAACAGTCCTTCAACGGCTAGGATGGCGAGGAGTAACGCGATTCATGGTGCGAATTGGGCTCATAAATTTGCTGATGCAATGGTGAAAATGGGATCCATAGAGGTTATGACTGGGATACAGGGAGAGATCAGGAAGAATTGCAGGGTTGTGAATTAATCTATTAATACTTC-T-TTTTTTTTTGTTCTTGTAATTGTATCATCACCTTTTTTTTTTATTCATTTTCAATGTCGATAACAAAGTAACTGATTCTTTTCAATTGTCATAATTTAAATATATTGATTTAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591910" ref_strand="+" ref_description="SGN-U591910 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1170936|sp|P43280|METK1_SOLLC (e_value=8e-101) S-adenosylmethionine; (*ATH) AT4G01850.2 (e_value=1e-97) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=5e-102) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; ">
      <seq>acnagcatttggcgaaccaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagaatggaaacttccttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtccacggccatctgaccaaacgccccgaggagattggtgctggtgaccagggccacatgtttggctatgcaacagatgagacccctgaattaatgcctctcagtcacgtgcttgcaactaaacttggtgcccgtcttacagaagtccgcaagaatggcacctgcgccnggttgaggcctgatggcaaganccaagttactgttcttatctccacccaacacgatganaccgttaccaatgatgagattgcccgcgancttannngcatgtcatcaaaccagtcatcccagana</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96730" stop="99072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97029" g_stop="97162" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98627" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="654" r_length="520" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98628" i_stop="98678" i_length="51">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98679" g_stop="98772" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="747" r_length="93" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U591910" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97029" e_stop="97162"/>
          <exon e_start="98108" e_stop="98627"/>
          <exon e_start="98679" e_stop="98772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACTGTTGAGTATAGCAATGACAATGGTGCCATGGTTCCAATTAGGGTACACACTGTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGA</genome_strand>
        <mrna_strand>ACNAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAACTTCCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCNGGTTGAGGCCTGATGGCAAGANCCAAGTTACT...................................................GTTCTTATCTCCACCCAACACGATGANACCGTTACCAATGATGAGATTGCCCGCGANCTT-ANNNGCATGTCATCAAACCAGTCATCCCAGANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591900" ref_strand="+" ref_description="SGN-U591900 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcaaaaatacaaagaggttatttctctcaaggggtaaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgaggtaattttaagtttagctagttgaatactagtctttttctgtttctttcatcgggttttgctgttttcttgctgggtgttttatgatagatctggggtttttgtgcaaaatttcttttggggtttttgaagtgatgaaagattgtgtttttatttggtttgtttagggttggttgtgttttagcttgagtgttgggaacaggggagggaaggaacagtttcttgaatctggaaatgaactaatttttcctgttaatttgtctttccatgaaaattttgaaatgcttctgtatttttgctcttaaaaaaccctgctttatactgaaaactttgatgttctcaacatgtttgtttttttgtaaaattatttttgtgtgttctgggtgatctttgtttctttgtatcatgattataaattacagtatgtgttgtttttcaaaattacgtagagattagaagtagttgattggtatggtggaggttttgtcttgtnagagatcagctagatctagtgcaaatatgcttgtgccaactttggagtagaagattctagcttaactctattgtgtttttaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96746" stop="98040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97045" g_stop="97740" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U591900" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97045" e_stop="97740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGT</genome_strand>
        <mrna_strand>GCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTNAGAGATCAGCTAGATCTAGTGCAAATATGCTTGTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592915" ref_strand="+" ref_description="SGN-U592915 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48928010|gb|AAT47716.1| (e_value=1e-50) S-adenosyl methionine synthase [Solanum brevidens]; (*ATH) AT4G01850.2 (e_value=3e-49) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=8e-52) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; ">
      <seq>aaagaggttatttctctccagggggaacaatattgccccttttccacatttataatcctctttctctgtctggacgcccaagggttcttcactttcctgttccttgagaatggagactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagccagatccccatagccactcttcgtgtcaaacttgcaccaacaccaacttggtcatggactttggtgagatcacaaccaaggctattgtagactatgacaagattgtgcgtgacacatgccgtaatattggatttgttactgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgatattgctcaaggtgtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96755" stop="98731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97055" g_stop="97162" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945">
            <donor d_prob="0.976" d_score="0.82"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98108" g_stop="98431" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="432" r_length="324" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U592915" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97055" e_stop="97162"/>
          <exon e_start="98108" e_stop="98431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCA</genome_strand>
        <mrna_strand>AAAGAGGTTATTTCTCTCCAGGGGGAACAATATTGCCCCTTTTCCACATTTATAATCCTCTTTCTCTGTCTGGACGCCCAAGGGTTCTTCACTTTCCTGTTCCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCCAGATCCCCATAGCCACTCTTCGTGTCAAACTTGCACCAACACCAACTTGGTCATGGACTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGACAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTACTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592482" ref_strand="+" ref_description="SGN-U592482 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48928010|gb|AAT47716.1| (e_value=2e-53) S-adenosyl methionine synthase [Solanum brevidens]; (*ATH) AT4G01850.2 (e_value=1e-51) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=2e-54) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; ">
      <seq>gaaaagattgccccttttcgacatttataatcctctttttctctttgttcgccgttgggttcttcactttcctgtttcttgagatccttgtcaaaattggtggtccagcttgatattttataggtaaaaagagatttcattgggccttttctttaattttgtcagaatggaaactttcttattcacctccgagtctgtgaacgagggtcacccagacaagctctgtgatcagatctctgatgcagttcttgatgcctgccttgagcaagatcccgagagcaaagttgcatgtgaaacttgcaccaagaccaacttggtcatggtctttggtgagatcacaaccaaggctattgtagactatgagaagattgtgcgtgacacatgccgtaatattggatttgtttctgatgatgttggtcttgatgctgacaactgcaaggtccttgtttacattgagcagcaaagtcctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96781" stop="98715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97080" g_stop="97162" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97163" i_stop="97745" i_length="583">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97746" g_stop="97827" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="165" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97828" i_stop="98107" i_length="280">
            <donor d_prob="0.472" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98108" g_stop="98415" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="473" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U592482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97080" e_stop="97162"/>
          <exon e_start="97746" e_stop="97827"/>
          <exon e_start="98108" e_stop="98415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGTTGTAGATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAGGTGAGGATAAATTACTTTAGTTGATATACTATAGGAATAGCCCCTTTAATTGAGAGAATATTTGGCGTAGAATATCTTTTCTTTGTGCATTATCCGCTAGCTTTTCTTTAGGAATATAAAATTTTAGCAAGTTGGAGAATTTTGCTCAGCATTTCCTTGTTTGTGATGTGAAAAAATTGCACTGATACTCTGTATAAAGTATGCTGCAGCTTTATTTCTCTTTATATTGTGCCTTCTTTTATATACTTGAACTTGTGTAATTGATTTTATCTTCTTGTAGAATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</genome_strand>
        <mrna_strand>GAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAG........................................................................................................................................................................................................................................................................................AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593284" ref_strand="+" ref_description="SGN-U593284 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggttcttcactttcctgtttcttgaggtaattttaagtttagctagttgaatactagtctttttctgtttctttcatcgggttttgctgttttcttgctgggtgttttatgatagatctggggtttttgtgcaaaatttcttttggggtttttgaagtgatgaaagattgtgtttttatttggtttgtttaaggttggttgtgttttagcttgagtgttgggaacaggggagggaaggaacaggttcttgaatctggaaatgaactaatttttcctgttaacatgtctttccatgaaaattttgaaatgcttctgtattttcgctcttaaaaaaccctgctttatactgaaaactttgatgttctcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="96837" stop="97807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97137" g_stop="97507" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U593284" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97137" e_stop="97507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACAT</genome_strand>
        <mrna_strand>GGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAAGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGGTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAACATGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTCGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593578" ref_strand="+" ref_description="SGN-U593578 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1170936|sp|P43280|METK1_SOLLC (e_value=6e-50) S-adenosylmethionine; (*ATH) AT4G01850.2 (e_value=1e-46) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=4e-51) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; ">
      <seq>caataaaaaaaatcattccacaaatgcactaattttcaagtatataataatatttctttttctttccttaatattccaaggcctaaaatatccatccaacacaatggaaacaggacaataacaaaataaagggtcaaaaaaaaaaatacaaaaacaaacaaccaaacacggggaaaattctaaacccacaaccaaacaacaaaaaacaaaaacataggcaagcacttattattcttggggcttttcccacttgaggggcttgacaacttcccatgtaaaatcggggtcatcacgtccaaagtgaccataggcaccatttttcaaaaatcttctattgccacccctcttcaaatccaatttaatgaacatcattccaggtctaaattcaaatttctccttaacaatcttcaaaatttccctgtcaggaatctttccagtgccataggtgtcaacaaatacaaacaatgcctcaggcaccccaatggcataaaatacctgcacaatgcatctacaaccaagtccactacctacaatactctttgcaccctgccttacattgtatgcaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="99818" stop="98650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99518" g_stop="98950" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U593578" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99518" e_stop="98950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAAGAAAATCATTCCACAAATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCAC</genome_strand>
        <mrna_strand>CAATAAAAAAAATCATTCCACAAATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAAATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAAAAAAAATACAAAAACAAACAACCAAACACGGGGAAAATTCTAAACCCACAACCAAACAACAAAAAACAAAAACATAGGCAAGCACTTATTATTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTAAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCACCATTTTTCAAAAATCTTCTATTGCCACCCCTCTTCAAATCCAATTTAATGAACATCATTCCAGGTCTAAATTCAAATTTCTCCTTAACAATCTTCAAAATTTCCCTGTCAGGAATCTTTCCAGTGCCATAGGTGTCAACAAATACAAACAATGCCTCAGGCACCCCAATGGCATAAAATACCTGCACAATGCATCTACAACCAAGTCCACTACCTACAATACTCTTTGCACCCTGCCTTACATTGTATGCACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593223" ref_strand="+" ref_description="SGN-U593223 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1170936|sp|P43280|METK1_SOLLC (e_value=3e-52) S-adenosylmethionine; (*ATH) AT4G01850.2 (e_value=1e-47) |; (*SWP) sp|P43280|METK1_SOLLC (e_value=3e-53) S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1; ">
      <seq>gtagtggacttgctcgtagatgcatcgtgcaggtatcttatgccatcggtgtgcctgagccattgtctgtattcgttgacacctatggcactggaaagatccctgacagggaaattttgaagatcgttaaggagaactttgacttcagacctggaatgatgtccattaacttggatttgaagaggggtggcaatagaagattcttgaaaactgctgcctatggtcactttggacgtgatgaccccgatttcacatgggaagttgtcaagcccctcaagtgggaaaagccccaagactaataagtgcttgcctatggttttggtccttggtggttgcctgtggctttagaatctcccccggggttgcctggttggccttggaatttctcctttgaccccttaatttggtattggcccggttccattggggtggatggatatcttaaggcttggaatatttagggaagaaaaagaaatattattatattcttggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="98693" stop="99788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98992" g_stop="99489" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U593223" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98992" e_stop="99489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</genome_strand>
        <mrna_strand>GTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGGTTTTGGTCCTTGGTGGTTGCCTGTGGCTTTAGAATCTCCCCCGGGGTTGCCTGGTTGGCCTTGGAATTTCTCCTTTGACCCCTTAATTTGGTATTGGCCCGGTTCCATTGGGGTGGATGGATATCTTAAGGCTTGGAATATTTAGGGAAGAAAAAGAAATATTATTATATTCTTGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569189" ref_strand="+" ref_description="SGN-U569189 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|75321780|sp|Q5W274|PDR3_TOBAC (e_value=0) Pleiotropic; (*ATH) AT3G53480.1 (e_value=0) | Symbol: None | ABC transporter family protein, PDR5-like ABC transporter, Spirodela polyrrhiza, EMBL:Z70524 | chr3:19836285-19842755 FORWARD | Aliases: F4P12.180; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=0) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3; ">
      <seq>ttctgcttggctacgacttcatcctcagattgattccagaacgaaatatgagtttgtgaaagaagtcctcgagaccattgagctagatggtataaaagacacgttggttggtatgccgggtgttagtgggctttcaacagaacaacgtaaacggctgacaatcgctgtggagcttgttgcaaatccctcaattatctttatggatgaacccacaacagggttggacgcaaggtcagctgcaattgtcatgcgggctgtgaaaaatgttgctgatacaggaagaacaatagtttgtaccatccaccaaccaagcattgacatatttgaagcatttgatgagctgattctattgaaaagtggtgggcgcatgatctactggggaccactcggacgaaattcttgtaaaatgatcgaatattttgagggtatctctggtgtgcctaaaataaagaacaactacaatccagcaacatggatgttagaggttacatcaacatctagtgaagctgagaccagcatagacttcgctgaagtatataagaattctgctctacacaaaaataacgaagagcttgtgaaaaaactgactttcccaccagctggttcaaaagatttgcatttccccacccaattttcacagaatggctggggacaattcaagacttgcttctggaagcaatactggtcctattggaggagtccttcatacaatttgatgcgctctctgcacatgctttttgcttccgttgtttttggattgcttttctggaacaagggaaagaaactagatgaccagcagagtgtcttcagtgtatttggttctatgttcactgcagtaatcttctgtggcataaataattcatcttcagttttaccatatgtgaccacggagcgatcagtcctataccgggaaagatttgctggaatgtatgcatcatgggcttatgcaatagcacaggtggcaattgaaattccgtatcttttagctcaagcactttcatttactgtcatcacctattcgatgattggatattattggtcggcccacaaggttttgtggtacttctattcgatgttctgcacattgttgtacttcacatacttgggaatgatgcttgtttcattgacaccaaacttgccagtagctgcaattctccagtcatccttttacacaatgttcaacctctttgccggattcttgataccaaaagctcaaattccaaaatggtggatctggttctattatctagtacctacatcgtggacgttgaatgggatgcttacttcacaatatggagatgttgatacagagattactgtgtttggagataagaaatcagtagcagcctttattagggactattttggatttcaccacaatcaattacctattgtaggtgttgttttgattgcataccccttagtttttgccactttatttgcatttttcattgggaggttgaacttccaaagaaggtgatgctgcaacttattcatttgttgtttatagaaacttttgatatattatccaaattaaatacttcccctcctccttttgtacattagactggtgagattttattggtaaataaaaaagacaaacagtgtgttacatcatttaatatgaaggaaatatgaaaaaagaaaaatacaattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="103545" stop="100118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103245" g_stop="103197" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103098" i_length="99">
            <donor d_prob="0.353" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103097" g_stop="102807" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="340" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102806" i_stop="102649" i_length="158">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102648" g_stop="102565" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="424" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102564" i_stop="102467" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102466" g_stop="102333" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="558" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102332" i_stop="102205" i_length="128">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102204" g_stop="101977" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="786" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101976" i_stop="101545" i_length="432">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101544" g_stop="101373" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="958" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101372" i_stop="101239" i_length="134">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101238" g_stop="100984" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1213" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="100983" i_stop="100864" i_length="120">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="100863" g_stop="100417" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1214" r_stop="1660" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U569189" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103245" e_stop="103197"/>
          <exon e_start="103097" e_stop="102807"/>
          <exon e_start="102648" e_stop="102565"/>
          <exon e_start="102466" e_stop="102333"/>
          <exon e_start="102204" e_stop="101977"/>
          <exon e_start="101544" e_stop="101373"/>
          <exon e_start="101238" e_stop="100984"/>
          <exon e_start="100863" e_stop="100417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATATGTACGAGCTTAATAGCATAAAGTTTGAATTGGTGTTTCTTTCATGAACATCATCCCTTCTGGCGATATCTATATTTGAACTGATGGGGCACTTGTACAGGAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAGGTAAGATGTATGTGAGGAGCAATTTTGTACTAAGTAATGCAGAAATCTTGAAGTAAAAGTAAAGACATCTACTTAGAAGTATCTTTCAGTTTGTGTAACTACACATCCTTCATGGATATCATCAAAAAGTTATTTGTCTGAAATTTGCTCTTTTGCAGCTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAGGTGCGCTAATTTCCCTTTTTATTAATGTTGCAGCAAGCTAGTAACTAGAGCTTCTTTGCATAGTAGCTGAGAGTGCTGTTTTTTCTCCGATTTGACAGGGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAAGTTAGTCATAGCTTTTCACCTCATCTAGTTTTGCGTTAGTTTTAAAATGCATCTTACACATTGTGTCACTTAAAGCACATTTTGCTAGTAACCAATGCATGATTCCTTTTGGTTTACACTTCCTGTAGAAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGGATTGCTTTTCTGGAACAAGGGAAAGAAACTGTAAGACAATAAAATACTAATCAACCAAAGCTCAATTATCTTATCGACTACATGCTTCATTATGCCGTGGGAATTGAAACTTTCTACATCCTGAATAACATGTTTTTGCAATAGTGATGCTTAATTGAGTGGTAGGCATGATCCAGTTGATAAGGGAATTAGGTTGTCTGATCCTATAATTTCTTTTCCTGTTTGGTTTATTAACTTTTTTAAAAGTGGCTTTATCTTTTCTTTGTTGACATCACCCACACTGTTAAAACAGAACTCTGGAGTTCCATTTTTGGCGTGTGAAAGTTGATGCAGCAGAACTGAAGTTCTCCATCGATGATAATGGACTTAGTTATGCATGCATTGTATGTATATGCTATTTAGTTGAACAACTTAAATATTTTCTTATACTGCCTTTTTGTTTTTCTTCGTCCTTTTTGACAGAGATGACCAGCAGAGTGTCTTCAGTGTATTTGGTTCTATGTTCACTGCAGTAATCTTCTGTGGCATAAATAATTCATCTTCAGTTTTACCATATGTGACCACGGAGCGATCAGTCCTATACCGGGAAAGATTTGCTGGAATGTATGCATCATGGGCTTATGCATTAGCACAGGTTAGATATAAGGCTTTCAATCTTGGCATGTTGACTTGTTAAGACTAATGGGGGATTCAGTAACTCCATATCTTACACTTGTCTTCAATGGTTCACTGTTTCATATTTGAGTCTTGAGTACCTTGATTTTGTAGGTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCTGTAAGTGGATCAGAATTTAAGTCTCCTTGAATATAGAAATCAACAAGTATTTTATAATTACTACTGTCTATGTGTGTGCATTTACACTTCAATCTTTTTCTCCTTTTCCTTTCATCGCAGCAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATTT</genome_strand>
        <mrna_strand>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATAT...................................................................................................GAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAG..............................................................................................................................................................CTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAG..................................................................................................GGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAA................................................................................................................................AAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGGATTGCTTTTCTGGAACAAGGGAAAGAAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACCAGCAGAGTGTCTTCAGTGTATTTGGTTCTATGTTCACTGCAGTAATCTTCTGTGGCATAAATAATTCATCTTCAGTTTTACCATATGTGACCACGGAGCGATCAGTCCTATACCGGGAAAGATTTGCTGGAATGTATGCATCATGGGCTTATGCAATAGCACAG......................................................................................................................................GTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCT........................................................................................................................CAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599430" ref_strand="+" ref_description="SGN-U599430 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|75321780|sp|Q5W274|PDR3_TOBAC (e_value=1e-66) Pleiotropic; (*ATH) AT3G53480.1 (e_value=2e-47) | Symbol: None | ABC transporter family protein, PDR5-like ABC transporter, Spirodela polyrrhiza, EMBL:Z70524 | chr3:19836285-19842755 FORWARD | Aliases: F4P12.180; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=7e-68) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3; ">
      <seq>gctgacttcctccaggaggttacgtcgaaaaaggatcaagcacagtattggcatgaaactaaagaaacatataaatttctgtcagttgatacattatcaagaaagtttaaggaatctccatacaggaaaaagctgaatgatgaactttctgttgcatatgataagtccaggtgtcataaaaattctataacctttcgtgactattcacttcctaaatgggaactctttcgagcttgtatgtcaagagaattccttctgatgaaaaggaattcttttatctacatattcaaaactgttcagcttgtcatcattgcattcataactatgaccgtatttttgagaactcggatgcatactgatcttgtacatgcaaattattatttgggagctctgttttttgctctcatcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="106619" stop="105377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106319" g_stop="106302" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106301" i_stop="106224" i_length="78">
            <donor d_prob="0.668" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106223" g_stop="105942" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="300" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105941" i_stop="105792" i_length="150">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105791" g_stop="105677" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="415" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U599430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106319" e_stop="106302"/>
          <exon e_start="106223" e_stop="105942"/>
          <exon e_start="105791" e_stop="105677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGACTTCCTCCAGGAGGCAAGTCCATAGTAGTTAAATGGTTCGTTCATCTCTATCTATCAATTAGAAGCTCATAAATTCTGTTCTTTTTTTCAGGTTACGTCGAAAAAGGATCAAGCACAGTATTGGCATGAAACTAAAGAAACATATAAATTTCTGTCAGTTGATACATTATCAAGAAAGTTTAAGGAATCTCCATACAGGAAAAAGCTGAATGATGAACTTTCTGTTGCATATGATAAGTCCAGGTGTCATAAAAATTCTATAACCTTTCGTGACTATTCACTTCCTAAATGGGAACTCTTTCGAGCTTGTATGTCAAGAGAATTCCTTCTGATGAAAAGGAATTCTTTTATCTACATATTCAAAACTGTTCAGGTCAGTGACCAGTCATTCTTTTTTATTATGGTAGTTCAACCTACAAAATATTGTAATACTCATTCAAATTATCCAAAGTAACTATAGAAGTCACATTTTCTTTATTGAGATTTCTCACAACTTATTGCAATTTATGCTTCTATTATGCAGCTTGTCATCATTGCATTCATAACTATGACCGTATTTTTGAGAACTCGGATGCATACTGATCTTGTACATGCAAATTATTATTTGGGAGCTCTGTTTTTTGCTCTCATCATTCTTC</genome_strand>
        <mrna_strand>GCTGACTTCCTCCAGGAG..............................................................................GTTACGTCGAAAAAGGATCAAGCACAGTATTGGCATGAAACTAAAGAAACATATAAATTTCTGTCAGTTGATACATTATCAAGAAAGTTTAAGGAATCTCCATACAGGAAAAAGCTGAATGATGAACTTTCTGTTGCATATGATAAGTCCAGGTGTCATAAAAATTCTATAACCTTTCGTGACTATTCACTTCCTAAATGGGAACTCTTTCGAGCTTGTATGTCAAGAGAATTCCTTCTGATGAAAAGGAATTCTTTTATCTACATATTCAAAACTGTTCAG......................................................................................................................................................CTTGTCATCATTGCATTCATAACTATGACCGTATTTTTGAGAACTCGGATGCATACTGATCTTGTACATGCAAATTATTATTTGGGAGCTCTGTTTTTTGCTCTCATCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586245" ref_strand="+" ref_description="SGN-U586245 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|75321780|sp|Q5W274|PDR3_TOBAC (e_value=1e-111) Pleiotropic; (*ATH) AT3G53480.1 (e_value=7e-75) | Symbol: None | ABC transporter family protein, PDR5-like ABC transporter, Spirodela polyrrhiza, EMBL:Z70524 | chr3:19836285-19842755 FORWARD | Aliases: F4P12.180; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=9e-113) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3; ">
      <seq>gcttgttagttcggacgatatagagtcgattagaatggatctctcagagattggaagaagctttagatcatcatttaggcgccagacttcgattttgaggagtaattcagctttgagtgcttctgaaaaggacgacgttgtggatgaggagaacatgttggcttgggcagcaattgagagactgccaacgtatgacaggttgagatcatctgtatttgaggaagtcaatggcaatgaggccaatgttaagacgaaaagagtaactgatgttaccaagcttggagctgtagaaaggcatgttttcattgaaaagatgattaaacacattgaacatgacaaccttcaattgttgcacaaaatcagaaagagaattgacaaagttggtgtaaaattgcctactgtggaagtgagatacaaaaatttaaccattgaagcagaatgtgagctagctcatggaaagcctctccctactctttggaattctctcaaaagcacaataatgaaccttgccaggcttccaggcctacagtcagaaatgcccaagataaatatcattaatgatgtcagcggtgtaataaaacccggacgtatgactctactgcttggacctcctgggtgtggaaaaacaacactgctgaaagcactttcaggaaatctggacaattctcttaaggtttctggggagatttcttataacggctataaattggaggaagttgaccacagnaaacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="110511" stop="107073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110211" g_stop="109834" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109833" i_stop="109614" i_length="220">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109613" g_stop="109490" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="502" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109489" i_stop="109007" i_length="483">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109006" g_stop="108921" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="588" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108920" i_stop="108023" i_length="898">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108022" g_stop="107938" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="673" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107937" i_stop="107437" i_length="501">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.284" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107436" g_stop="107373" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="736" r_length="63" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U586245" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110211" e_stop="109834"/>
          <exon e_start="109613" e_stop="109490"/>
          <exon e_start="109006" e_stop="108921"/>
          <exon e_start="108022" e_stop="107938"/>
          <exon e_start="107436" e_stop="107373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAAGTAAGATTTCTGTTAGTTACTTGCCACTATAAGTTAAATTATTGACACTACTGGAAGGTCATTGCTCTAGCATTTAAAGTTGCTATCTTTTTATTGGTGATTGACAATGCTAAGTTATGATCATCATTATCCGCATATCTAACGTCTTCTTTCTCATTTTATCAAAGTTTTATCTGTTAGACTTAATTCAATGACCTGAGGCTACGGTTGACTCTTGTAGAGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATGGTAATTTTTTGCTATTTGATTACAGTTCGTTTTTATTGTCATCAATCTGATCTCTTACATATGTGATAGTTCAAATCAAAGTTGCAGGCGCTGGGTTTAAAAATTGATCATCAGGAGGCATTTATTAGGACTTCATGTAACAGAAGGTGTTATTAATTGAACCACTTGAACTGGAAATGCTTGAATCTTTCTTGTGCTAATCTGTCCAGCCCGATACTCTGGGTTGTCTACTTTTAATTAGTATTTTCCATTAGTTGATTTCAGCTATATGTGACAACAATAAGTTATTTTTCTGATGCACTGTAATCAATGTTGCTAGAAAAAGTAAGAGAGACTTAAATGAGCATCTTTAAAGTAATCCTGGTTTCAGCACTCAAATATTTCATGCATACAGAAAGTGCAAGCTCCAGCATTAGGTTATTCTGTTGTGCTACTTGTGATTTTGACAGTTCTCTTAATCTAGTGCTTCAATTTTTTCGACAGAACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGGCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCGGACGGTATGTCATCAAAGCTTTTCCATGGCATATCTGGTGCAATAAGTGTCTCATCAATCTTCACTTGTTGACTGAACAAGAACAACAAAAACAGAATATGTGATGATTGTATTAAACTCAGTATTGATGAACATGCTTGTGAACTAGTCATCATAGCTTGTGAACTACTATAGTTTCTTACTACTTTGTGTCTTTTACTTTGTCTAGCTCTAATATGTTTATGACCAGTACTTCTCTTTCTTCAATAATCATAACTTTTTACTCTTACATTTCATTTAAACCACGTTGTGAAAAGTCGAAGGTCTATTAGAAACAACCTCTCCACCTCACAAAGGTAGGGTTAAGGTCTGTATATACACCCACCTCCCAGACCCACTTGTGGGACTGTACTACATATATTATTGTTGTTGTTGCTTGTGAACTAGTCATGCTTTGTTTTATTTATCACTTGATATTTACATAGCCCTATTCAGTAATGGTCATTTGGTGGTATGTAAGAGAAACGGTTAAGTGAACCAAAAAAACATTCAGCCTCTCCATAATTGCAATTGAAAGATGAATAAATACTTGCTTGCATGGTATTGTTCTGCAGAAAGTAAATTGACTAGCATCAATGCAAGTGATTATTTAGTGATTATATTATCATAACATAAACTGGCAAGAAGGTCTTTTGAGGTATATTTGGTTTTATGTGATCAAGTGTCTGAACTGGTCTTGCATTTGTGATAATTTTGAGATGAAGGGTTGACTGCAGCTTACTTTTTCTGGCTAATTTCAGTCTACCTTTTAGCAGCATGTTCTGAATGGAGAGTTAGCTCTTCATTCTGAAGTCATTGTTTTAACATGTGAGTTCTTGAACCTGTCATTTTGAACTTACTCAAATTCTTTGCTATTCTAACAGTATGACTCTACTGCTTGGACCTCCTGGGTGTGGAAAAACAACACTGCTGAAAGCACTTTCAGGAAATCTGGACAATTCTCTTAAGGTCTCTTCAAGTTGTTTCTCTTTTAATGTCAGACAAAAAAGAAAGCTGTTTTTGCTTTAATGTCAGCAAGAGAAAAATATAGGAATACTTCCTTAAAAGATATAAAATCCTTCAGCTCATATAAGCAAATACTTTGATCTACAACATACTGTGAATTAGTAGTTCTCTATTTCAATGATATGAACTTTTCCAGGTCTTCATTTGTTGTATTTGTTTTATTAGTGACTTCTTCTGGTTCTTCTTAGTTACTTTTAGTTCCTTTATATCTTTAAGATCTCAGCTAGGGAACACTTAATCCTATCTTTCTCCCGTTTCACCAATAGAACAGAAGCTTTATTGACTTCACCAACGCCTCCTCCAAGAAGAAACTAGTGAAGAGTTGCGCTAATTTTTGCACCTTTACTTGAACGAGAATGGTGTAGAATTCATGTATGGATAGAGTTAATAACATTTGGAATTGATGTCAATCTGACTGTGTCTGCTTCTGGCCATGTCTAACAGGTTTCTGGGGAGATTTCTTATAACGGCTATAAATTGGAGGAGTTTGTACCACAGAAAACTTCTG</genome_strand>
        <mrna_strand>GCTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAA............................................................................................................................................................................................................................AGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGCTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGCCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACTCTACTGCTTGGACCTCCTGGGTGTGGAAAAACAACACTGCTGAAAGCACTTTCAGGAAATCTGGACAATTCTCTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGGGGAGATTTCTTATAACGGCTATAAATTGGAGGAAGTTG-ACCACAGNAAACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601695" ref_strand="+" ref_description="SGN-U601695 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-29) Ulp1; ">
      <seq>gcttctcaattttgaaaatcaaaatttgtgctctccatccgtcagccttcgtctaaactgtccgccatttttgtctactttgtcagcctttgaaaatcaaaattgtgctctccgtccgtccgtcttcgtctaatctgtccgccatttagtgtctactctgtccgccttaaaaaatcaaatcgccaatttcgtctactctgtccgccattttcgtccaatattcttgaaagattgggcagcattggatgcatataaagacaagaaaactggagaacttttgggtccacaacattcgtttaatgtggagtttgctcaagacaacatgcaacaaataagtgatagccttgattgcggactattcgtaattgtatatgcagaattctgagtgacaaaatcaacatgtcatgtaatagttttaagagtagctatcttcgcaaaagatatgcgattcttttattgaagtatggtctcgacaagatgaatgctggatatgttagcaacagtgatgacccttcaagaatgaagaatgtattaaacccatcatctgaagatgaaattgttaatgtaggctagttagttttcaatgtttgatttttttttgttttttggagttaaacaagatgtttgaagtatttattgacataacaacacatattgttaaattatgaaagtgttttgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="114339" stop="116362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114638" g_stop="114866" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114867" i_stop="115534" i_length="668">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115535" g_stop="115649" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="345" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115650" i_stop="115723" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115724" g_stop="116062" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="684" r_length="339" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U601695" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114638" e_stop="114866"/>
          <exon e_start="115535" e_stop="115649"/>
          <exon e_start="115724" e_stop="116062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTT-TTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTTTGTCCGCCATTTTCGTCTAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTATTGGGATTACTCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTGGTTGAAAACAAGTCTAAGAACTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAATTGTAGTTACCTTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTACGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTATCTATTCATCCTTATAATTATTCTTATTGTTTTGGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAATGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTT</genome_strand>
        <mrna_strand>GCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAAACTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTAGTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT..........................................................................TGATTGCGGACTATTCGTAATTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTGACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585296" ref_strand="+" ref_description="SGN-U585296 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157341348|emb|CAO49255.1| (e_value=1e-168) unnamed; (*ATH) AT5G15930.1 (e_value=3e-162) | Symbol: None | plant adhesion molecule 1 (PAM1), identical to plant adhesion molecule 1 (Arabidopsis thaliana) GI:3511223; contains Pfam profile PF00566: TBC domain | chr5:5199749-5202452 FORWARD | Aliases: F1N13.70, F1N13_70; (*SWP) sp|Q96CN4|EVI5L_HUMAN (e_value=7e-50) EVI5-like protein OS=Homo sapiens GN=EVI5L; ">
      <seq>gaccctgagaacgcgggttcaccagtgatgcccaaaaacacggaggggagaatgctcgcacacgccagctatgttgttgttaaccaaaacgatgagacactgtggaaataatcccacaaagatcattggtgttagtgaagtatttttcagttcagggtttaggagattctgtattactggtccatgcagttgggaatgcacggaaatcttgtggcagtagtttaatgttctattggagtgtagtcttggggttgttctaggttagcaatggaaagtaaagtagtagacgaaaatgaggaaggtccggttgttcccatgcgagttgatagatttggttttgtgaagcaggaacatggtcctactgaaggtttagcaaggagccggtcggcctttgaatatcagagagatgaaagaaggattaggaaatggagaaaaatgataggtgttggaggaagtgattggaagcagtatgttaggaggaaaccacatgttgttaaacgaagaatacggaaaggaattcctgattgtctgagggggcttctctggcagctaatttctggaagtcgagacctcttgttgttaaatcctggagtttatgagcaactagtcatatatgagacatcagcttccgagttggatattattcgagatatttctcgcacatttccttcacatgttttctttcagcagagacatggacctggtcaaaggtctctttacaatgttctgaaagcatattctgtctttgaccgagatgttggatacgtacagggcatgggatttgtggcaggtctgcttcttctttacatgagtgaagaggatgcattttggttactggttgcattgttgaagggagccgttcacactcctatggaaggaatgtacttggtaggattgcctctagtccagcaatatctctttcaatttgatcatttggtgaaagagcacatgccgaagttgggtgaacattttgctcaggaaatgataaatcccagcatgtatgccagtcagtggttcataacagttttctcgtactctttcccgtttcacttggctctcagaatttgggatgtctttctttttgagggtgtaaaagtagtcttcaaagttggcttggctctactgaaatattgccatgatgatctggtaaagttgccatttgagaaactcatacatgctttgcgcaacttccctgaggatgccatgaatccagatatacttttaccaatggctttttcaatcaaggtttccaagagtttggtggaactgaagcaggaatatgaacagcaacgactgaaacctcctgaatccccagtcaaacagtaagatgtatcaaatgcaaaatacttctggagaaacaatcaacagcttttgtgcacaaacttggattctttagttctctgtttaaaaaactgtctcagctgatgtacataatcacattgatcagattacccgatccatacagttttagtacaaaatagtttattatttgaaggagaaggcacctcagtctttgccatgagggtcaattgtacaagtccaactagtcttcttatgtaaaaatgttatgtgcatttctctctttgtaaaggtagttttctgatcagtttacacgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="+" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="118093" stop="125023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118392" g_stop="118481" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119236" g_stop="119295" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="150" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119396" g_stop="119649" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="404" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119650" i_stop="120169" i_length="520">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120170" g_stop="120365" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="600" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120366" i_stop="120618" i_length="253">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120619" g_stop="120789" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="771" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120790" i_stop="120872" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120873" g_stop="120989" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="888" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120990" i_stop="122314" i_length="1325">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122315" g_stop="122512" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="1086" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122590" g_stop="122649" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1146" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="122737" g_stop="122835" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1147" r_stop="1245" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="124354" g_stop="124728" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1620" r_length="375" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="+" ref_id="SGN-U585296" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118392" e_stop="118481"/>
          <exon e_start="119236" e_stop="119295"/>
          <exon e_start="119396" e_stop="119649"/>
          <exon e_start="120170" e_stop="120365"/>
          <exon e_start="120619" e_stop="120789"/>
          <exon e_start="120873" e_stop="120989"/>
          <exon e_start="122315" e_stop="122512"/>
          <exon e_start="122590" e_stop="122649"/>
          <exon e_start="122737" e_stop="122835"/>
          <exon e_start="124354" e_stop="124728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTGAGAACGCGGGTTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAACGTAATTTTTCTTTTATCTTTTATCGTTTGTTGGAAAATCATAGTATTTCGTGTCAACAAGATAATCAAATTACATGGTTTAATTTCTCCATAATGCTGGAATTTTATATCTCAGGTTTGGTTTTCTCCGTCAATTGCTACCCTTTTTTGTTTTTTCCCCCCTTTAAATTAAATCGATGATTGATTTGTTGATATGGACATTCTCAATCCAAGAATTTAAAGGTTGTATATTTCTTTAAAATTGAATGTGGGTTTTTGATTTCTCTCTTATTTGTGTACCCTTTGTTCTTGTTTTTGTTTTGGGGTTTTGATTTGAATGTTATAGATTTGGGTGTCCTCCTTTAATGCTGATATTGCTGTTTGTCTGCATTTTAATAAATTATCTATACCCTCATTTACAGTCTTGTTATACCCTTTTTGGGGGTCGAGTGGGGGTGGGGGCTGCTTTCCTATTTTTGGGTCGATTAGATGACTAAAAATCAATTTCTTTACCCTCATTACAGTCTTGTTTTTACCCTTTTGGGGGTTATTTGAGAGGCTGCTTTCTCGATTTGCGTGATTTGGGGCTGGTTAGATAACTAAAAGTCAATTTCTTATGCAATAACCAGATGGTGATGAAAAATGTTGGATTAAAGTAGGCGAAAATAATCCAAAAACCAGGTCCTTGGTGTATGATACTAATGTATGCTGAGGCAATTTTCAGATTCTCTTTTAATATTTGGAAGGGGTCTAAAATTTCTCTTTCTTCTTCATAGGATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAGGTGAATTTATCTAAGATATCTTTTTTGTGATAAATTGGAAAGGTTTTTCTCTACTGTTGTGATGTTTTTATCTGTTAATAAGAGTGCCATTGTTTTGCAGTTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAGGTAGGGACCTTTTGTTTGATTCATTAGTTGCTGTAGTTATGTCCTATTTCGACTTCTCCAACAAACTCTTGTTCTCTTTTTCCACACTCACTCAATTTGCCATCCTGAAGAATGAAATATAAACATATTTGGTGATATCACAAAATTTAAATGGAGCTTCTTCAGATGTTTAATCAACAAACTCCATACTAAGAAACTAAATCTAATGCATTGCTCCTGTGCGATGAACAACTTTGTTTCTGAAGTATTTCTACTGGTGTTTGGGGCAATTGAATCTTTATAATGTAATATTCGTGTACGAAAAGTAAATCGTATGGTTACACATATAAGTGAACATATTTGTGTCAGGAATAATAGCATTAAACTGGTACTAATAGAGTAGAATGGATATATGGATACAACTGAACCCAATTTGTTTGGAATTAACATGTGTGTGTATTTTTAGAAAGGTAACAAAGAATTATGGTGTATTAATTGATTCACTGATTCTCTTATTACATTTATTAAATATATTTTGCAGAGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAGGTAGGAGTTAACTTTTGTCTGGTTTTATTCTTCTTATTTGTTTTCTGGAAAAAGTCTTGATGCTTCAGTAACTAATGGAGATAGATAATTTGTTTGAGCCTAGGAGAAAAGCTTAACGTCCTACCTTTTTGGCTAATTTTGTAGTTCGGGCTAATTCTGCTTTTCAATTGATTGCTCGGTCCTTGACATGTTCTTTTTTGCTTTACCTGTGTAATGGAGATCTCTCATCTGATTAGTGTTTTATCTTCTGCAGCAACTAGTCATATATGAGACATCAGCTTCCGAGTTGGATATTATTCGAGATATTTCTCGCACATTTCCTTCACATGTTTTCTTTCAGCAGAGACATGGACCTGGTCAAAGGTCTCTTTACAATGTTCTGAAAGCATATTCTGTCTTTGACCGAGATGTTGGATACGTACAGGTATACATCTTTAAATTATTGATTCACATGTGATCTAGTGTATGGTTATCGATTTGGGTTGATTCTTATCATTTTGGTTGCAGGGCATGGGATTTGTGGCAGGTCTGCTTCTTCTTTACATGAGTGAAGAGGATGCATTTTGGTTACTGGTTGCATTGTTGAAGGGAGCCGTTCACACTCCTATGGAAGGAATGTACTTGGTAAGCCTTTACCTTCAAGCAGCTTGTTGCAGCCCCTGATAAATGTATATGGTCAATGCATTTGAACGAAAAAGGATTTGGTTGTGAAATATCTGATCAATTTTTTAGCATGAAGAATTTGACTATTCTTTTAAACCCCGCTTTGACCATGGTATCCAATTTAAACACCAAACTTTATGCTTTTTTATCCTTAATGCGATCAACTGCTACAATTCCAGAAAACCACTTCCATAGTCTAGGGTCCATATAGTAGTTAAACATAACTACATGATGTGTCTCTGTGTCCATATAGAGCCTATATCTAGTATCAGCTACTCTATCCTTTCCAATTTATACCGTGCTGTTTGATTTCGTAAATGTCTTTCCAATTTTTATGATGGTGCTCAATTTTGACATAGTTTAAGATATTCATTTTTGTCTTATGTATTATATCAGTTTGTAACGGAAAAAAGAGTGAATTAATGGTTGAAAAGTTAGCTTGATAGAGAAAAAGTCGCTTGAGAGTTAAATATTTATATAATTAAATGGATTTGAATTCTTAGAGTGGTGAACGTTGGATAGAGATTAAATTGTGTCTAATATTTTGGAATATCCCAAGCTAGGGTCACCTTTTAAATGATTTCATTCTTACATTTAATATGCTAGTAGTTACATAAGTCCCCGATGCCGTATCTTTAAGGTTTCTACTGGATGTGGAACGGAGTGGTAACCTCATTTGCATGTGGAGCAATAGGATTATTCCAAGTAACTTCGAATAGTTTTATGGCAAGGTTGGAATGCCTTATTCTCTTGGACGGATTGCGTTCTTTGTGCTCTTCCTCCATATACTAATAAAGTGAGAGTTGGGCCTCCTCACATCTTTTGTGATCTGAGTCCAATATAAAGTTGGCATCACATATTGTTATTTAAACACTTTTACTGAAGTTGGAACCTGCAGCATAATTGCCTTGAGGTTGCTTTTCAACCTATCTGAACTCTGAAGTTCTCAAAGTTTCGATAAGCTGGTCCATTGCTTCCTTTTTTTTTTTTGCAGTGAATAAATACTTGTGATAAACCAATCAGTTAAGAACGATTTATGAGAATTAATGTACCAAGTTGTTTGTTGTCCAGTTCTGTTTAGTATTTAGATGTTACATGAAATTCTGTCATTTTTTACGATGTCCATGAATTCTCTACTATCATGATCTCTGATCCTGGCTGTTGCTATATTTCTCTCGAGACTTTCAGCCGCTTCCACATATCAGGAAGTCTTTGTTTTGATTACATAACATCTGTCATATGGCCTACTTTATATTAAAATAATAAATGTTGTACATGCGGATTAGGTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAGGTCAGTAATCTATCATTATTATATCCACTCTCTGGTGCCTGGATTTACTGTTGAGCTTACCGAGTTAACTGTACCAGGGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTGGTAAGTTTTAAATACAGAAAAGTTAATGAGTGCTATTTTTCCTTGCTCCTACAGGTTAGAACAACTATAACACTCTCTTATTCGCAGGTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAGGCTAGCCTCCCCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCACCCCCTCCTTCCCTGTGATTAGCCAAGACTCTCCTCGCCTAACAATGATATGTAAGGGTTAGACAAATGCTTGTAGGTTCCTATATTATTTTTCAGAGTGATACTTATTTCTTATTTATCTTTCCAAAGACTCTTTTATGGGAAGGGATGGAGTTGGTATAGCTGAGGGAAAAATTTTAAATTGGAATTAACACAGATAAAAAGGAAACTAATGGAAACATTAACTTGTGATGATTTTGTAACAGACAAGCAATATGCAGTACAATTTTAGCAACTTGAGGGGAGGTTTACATGATTAATCATACTTTAATTTCACCAGCTAGGGAAACATCCTTGCCCTCCTAAGACATTTGCGAAGAAACCAAATAAAAAACAACAATAAAAAAAATGAAAAGAAAGAAAACATTTGTAGTCAAAGCGCATCCACTGCTTCCCAATATGTTCACGTACAAAACATTGGTTTTTCTTATTTTATTGAACTAGGCAATAAAACACTGTTTGCTTGCATAATTAGTTCAAGTTAATTGACTGTTGTTCCTTGAGCGAATTTTCTAAGTAATGTTTGTTTTCTTTCTCTGGTGCTGTGTCTTGTTATCTACTGGGCGTGATTTCAGGTGTTCTGCAGTTCTTAATCAGTGTTTATACGTCTCCTGTACATGTGATGGTGCCTCATAACTTTGACAATTTTATGTCAAGCTTCAGTCTGAAGTGTGAAAATGTTGAACTTAAACTAGGCACTCTACCTTGTATTGAAATTTATTTCTCATTGTTATACATGATAATATTCATTTACTTTTTTATTTGTGGGTAGTTTTGCATCAGTTGTGCTTGTGTTTTCTCTTGCATGTCTATTTGTACATCTTCCTTAGCCATTTTGATGCATTCCTCTTGTGGCAGTGGTGTGGTTAATCAGCAGTTCATAGGTTGAACTTAAATTGGTGGATGTTTAGCAGCCAGACTTGTGAACCTAGAATTGTCTCTATGTGGATCTACATACTAGAGTAGTTTGAGTAGATACGAGTAGAATCTAACCAGTACAGGCTTGTTGTAAGGCTGCTGAGTTTGGCTCAAGGAGAGCTTCATAAATGGATTAAGTTTAGAAGCAAAACTCTAGCATGATAACTGATGAATATCAAATATAATTGAATGCATATAGATTGCAAGCCTGTCGGTTAAGTAGCACTATAAAGCTGTATGTGGCAAAGATTTGTTTCCAAGCCTATGCAAGGATTAAAGGGAAGGAATTGTAATTAGTTAAAGAGTAATTATAGTATACTTGATGATATTTCTTTACATATCTGATTTCTCAGAAAGAGTAGTTAATCTGGATATAACACAAGACTGAAACAATGTAAAGGGTAACAAAAGGCTCTCAGCATCTGAATGAATCCTCATTTGATTGCTGCCCCCCACCCCCCCCCCGTGTCATCTCGTTAAGCTATTTCTCATTTGTATTTGTTCTTTTCATTTAATAGGTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTTTACACGCGTTT</genome_strand>
        <mrna_strand>GACCCTGAGAACGCGGGTTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAG....................................................................................................TTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAG.............................................................................................................................................................................................................................................................CAACTAGTCATATATGAGACATCAGCTTCCGAGTTGGATATTATTCGAGATATTTCTCGCACATTTCCTTCACATGTTTTCTTTCAGCAGAGACATGGACCTGGTCAAAGGTCTCTTTACAATGTTCTGAAAGCATATTCTGTCTTTGACCGAGATGTTGGATACGTACAG...................................................................................GGCATGGGATTTGTGGCAGGTCTGCTTCTTCTTTACATGAGTGAAGAGGATGCATTTTGGTTACTGGTTGCATTGTTGAAGGGAGCCGTTCACACTCCTATGGAAGGAATGTACTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAG.............................................................................GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG.......................................................................................GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTTTACACGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584803" ref_strand="+" ref_description="SGN-U584803 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157336239|emb|CAO70924.1| (e_value=1e-175) unnamed; (*ATH) AT1G56720.2 (e_value=3e-164) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr1:21267093-21270033 REVERSE | Aliases: None; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=3e-120) Putative serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540; ">
      <seq>ccaataactgctccttgggcgctaagtggatttcctgaggtttctcacttcgcttggggccactggtttacattgagagatcttgagcttgcaacaggccggttttcaaaggagaatattctcggtgagggtggatatggcattgtctaccgggggaatttgattaatggaacacctgtagctattaagaagctcctcaacaatctaggccaagctgagaaagagttccaagtggaggttgaagccattggccacgtgcgtcacaaaaatttggtccgccttctaggatactgcattgaaggaactcacaggatgctggtttacgagtatgtcaacaatggcaatttggaacagtggcttcatggagctatgcgacaccacgggtatctcacttgggaggctaggatgaaggttctccttgggacagctaaagctcttgcgtatttgcatgagaatattgagcccaaagttgttcatcgagacataaaatcaagtaatatattgattgatgatgacttcaatgcgaaggtctctgattttggtctggccaaactgcttggtgctggtaaaagtcatatcacaactcgagtcatgggtacctttgggtatgtggctcctgaatatgcaaatactggtctcttgaatgaaaagagtgatgtttatagctttggggtagtgttgttagaatcgatcacaggaagagatcctgtggactatggccgtcctgcccaagaggtgaatcttgtcgattggttgaaaatgatggttggaagcaggcgctctgaggaagtagtagatccaaatattgaaactaggccaccaacaagagctctcaaaagagcccttctgactgctctgagatgtgttgatccagattctgacaagagaccaaagatgagccaagttgttcgtatgcttgaatcagaggaatatcccataccaagagaggatcgaaggcaacgaagatctcaagcaggtaacggggagagtgattctcaaaactatgacactgacaagagtgacaacccagatccaaggtctgaaagtagaagaagccatcaagtataaccatcaaagacacatctttctggtctttcatgagaagtgtgccataacaaagctttcattataatgaaagtctacgggatcaaatgagtaggacgatgaactgtttctgctggtatattgttggtcagaagagattgactacttttcttctcccttcaagggttctattctttcttaatatcttttatttgtatcttgtttttttcttctttattttggttctttccttgtatgaaagtagatagggagtaaattgttgtggacttaatggtcatgtaactaaactggaagcaatcaggggcgggggtttgtgtacagaagaatttcttgcttcggtattcaacattattcaagtagtattgtaatttattttcttctaaagtgaataccatggtttaaattctagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129602" stop="125515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129321" g_stop="129116" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129024" g_stop="128920" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="311" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128751" g_stop="128629" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="434" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128552" g_stop="128382" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="605" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128204" g_stop="128075" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="735" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127112" g_stop="126900" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="948" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="126343" g_stop="125815" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="949" r_stop="1477" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U584803" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129321" e_stop="129116"/>
          <exon e_start="129024" e_stop="128920"/>
          <exon e_start="128751" e_stop="128629"/>
          <exon e_start="128552" e_stop="128382"/>
          <exon e_start="128204" e_stop="128075"/>
          <exon e_start="127112" e_stop="126900"/>
          <exon e_start="126343" e_stop="125815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCTGTGAGTTGATAAAATCAAATTTAATGCTTTCCTTACTGGTCCTTTTGTTTTAGTTGCCGGCTTGAGTTTGAATTTAAAATCTTTGTCCCAGAGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAGGTATTTCCCTATATGGAAGTCCATGATAGTCTTATACCATTTCTCGGACACGAAAATGAAGCTTTGGATTGTTCAATTACTTTCATGCGCATGTGAAGTTATTGAATGAGTATTAAGTTGTTTCTTGTTTAGCATTTGAAAATGCTCTGTTCTAATTCATGATCTCAGGATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGCGTAAGCTCATTCAGCTAAATGCTTAAATCTATTTTGGAATAATACAGATCTCTTGATGTGCTATCTTTTCTTGCAGTCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGGGTTAGTTTCTTTCTTCTGCTCCTTTTGATTCCATTCCGACTTGCTTCACGTTCTGGTCTTCTAGACTTTACAATCTTCAACTTCTGGTGTCATGTTTTATTACTCTTAAGATATAAAAAGTTGAAACAGAAGTTAAGCAGTATTGTATGATTTCACACCATTACAAATATTTGACAGGTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAGGTTTGTTATCCTTCGTCCTTTAACTTTAAATCTAATTAGCACACTGATGTAAATATCTTATATGCATCTTCATTATTGAAAAAGCTGTAAAACTGATTGTGCCCAGATGTATGGCAGAAAAGATCTTTCTTAATACTCACCTTGCTGGTTTTCTGATATTTGTCTCATTGTCATTTTCTATTTAGTTTCCCTTGAATTTTCTCCTGATTACTTGGTCTTGATATATCATGTACCATAACCAATGTTCACATGCTATGAATCTTTGAGAAGGATATTCCAACTCACCTGATTCCAGCGATTGATCTTGGCTTAAAACATGCTCAATACTTCAGCCTTCTGCTGAATTATAGTTTAAGAGAATATCCCACGCAAAGCCTTACTTGTTCACTATTCATTACATTATCTGAAGAAAAAGCTAGTATTGGTAAATGGTAATGCTGCTATTTCTTAGTTTCTTTATGAGACAACATTTGGTTGGTTTTCATCTCCTTTCACCATGCCTTAATGAAATATATTTTGTACATATCAAGACCACATTCACTACAACTTAGCTGTCTAGTGTCCTAATCTGGTGCTTTGTGTGGTCAGTATGTATATCTTCCGTCTGTCCATTAATTGGTAATAAATAGTAATCTCATACCTCACGCCATCAAGCCCAAAGGAAAGGTGACTAGAAGCTGGTTAATATTTGAATTTTATGGTCTTTCACTACCAATGGCCCACAGTTTTGTATAATGACATGGATTTTAGGAGAATCACATCTGAATCTTTTCAACCTCGGTAAGAATTCTCACGAGAGCTTGAGTTCTACTGGAGGATTTGCTCCGTTTTTCATTTTAGCCTCTAAATTTTTATGTTGATGTCCTTTTCAATCTCCCTCGCCACTTCTTTTATACCAATATCCTACTCTGGTTTTTGCTCTACAAACAGACTCTTAAAGTATTAGACTTTTGCGGTTGCAGGTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACTAGGCCACCAACAAGAGCTCTCAAAAGAGCCCTTCTGACTGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAGGTTGGTGTCCGTGTTTGTGTCCTCTCTTTTCTTCTCTTGCCATGTTTTGGACCCTCAAGCTCTTATTTTGTTTAACTGTGATCCCTGTTATAGATCCAATAAATTCTGTCTTTGTTTGAACAGATGTGTTAATTTTGCAAAGCTTACTAGCAGTTTCTTCTTATTCAATCTGCATTGCTTCCTAGAATTTAGGAATATGGCTTTATGTTTTTGGTCATTCTTTTCTTATGTAGGAACTTTTGTCACTTGATGGAGGGTGGGGGTGGGGTGTTGGTACCATTCTTTAGATTAACTTGTTTCCTGAGGTGTAGATAAATAAAGGTAGGATGAACAGACATCCATGTGAGCACAACCAATATTTGCTGCTTGTTGGTGTGTCATCTTGATATCAGCTAGAGAGGGTACCAAATGATAACTACGCCTAATATATCATCGTCAAAAGTATCTCATCTGTCAATTGCTCAACTTGTTGTAGAGCTGTAAGAACAGAAATGCAGCAACTCATTCACATAGGAAATGAGAAACTTAAGTATCATTTTCATTTTCTCCAATGCAGGATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAG</genome_strand>
        <mrna_strand>CCAATAACTGCTCCTTGGGCGCTAAGTGGATTTCCTGAGGTTTCTCACTTCGCTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCT...........................................................................................AGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAG........................................................................................................................................................................GATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC............................................................................TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG.................................................................................................................................................................................GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACTAGGCCACCAACAAGAGCTCTCAAAAGAGCCCTTCTGACTGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595535" ref_strand="+" ref_description="SGN-U595535 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157346975|emb|CAO17357.1| (e_value=1e-33) unnamed; (*ATH) AT5G18500.2 (e_value=2e-32)  Symbol: None | similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At3g17420.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP54446.1); contains InterPro domain Serine/threonine protein kinase, active ... ; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=1e-17) Putative serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540; ">
      <seq>tgacaaggaaggttgtggatcgcaatcaggagaagaagggagttcatgcaaaagtgcaatgtataaagcttataattcacatccaataactgctccttctcctctaactggattacctgagttttctcacttgggttggggccactggtttacattgagagatcttgagcttgcaacatgccggttttcaaaggagaatattctcggtgagggtggatattgcattgtctaccgggggaatttgattaatggaacacctgtagctattaagaagctcctcaacaatctatgccaagctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0001H15-3amqj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0001H15.1" temp_strand="-" temp_description="C01HBa0001H15.1  AC238948.4 htgs_phase:1 submitted_to_sgn_as:C01HBa0001H15 upload_account_name:manual">
        <position start="129703" stop="128813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129403" g_stop="129116" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129024" g_stop="129010" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="303" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0001H15.1" gen_strand="-" ref_id="SGN-U595535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0001H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129403" e_stop="129116"/>
          <exon e_start="129024" e_stop="129010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAGGAAGGTTGTGGATCGCAATCAGGAGAAGAAGGGAGTTCATGCAAAAGTGCAATGTATAAAGCTTATAATTCACATCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCTGTGAGTTGATAAAATCAAATTTAATGCTTTCCTTACTGGTCCTTTTGTTTTAGTTGCCGGCTTGAGTTTGAATTTAAAATCTTTGTCCCAGAGGCCAAGCTGAGAA</genome_strand>
        <mrna_strand>TGACAAGGAAGGTTGTGGATCGCAATCAGGAGAAGAAGGGAGTTCATGCAAAAGTGCAATGTATAAAGCTTATAATTCACATCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACATGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATTGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCT...........................................................................................ATGCCAAGCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>36</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6806" PGL_stop="7278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6806" e_stop="7056"/>
            <exon e_start="7142" e_stop="7278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6806" e_stop="7056" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.948">
            <gDNA_intron_boundary i_start="7057" i_stop="7141" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="7142" e_stop="7278" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6806" stop="7056"/>
              <exon start="7142" stop="7278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGTCACTTTTTCTGAAGAGTTAGGCATGCAGACCTCAGCAAGGTAGCCAAGGTTTCAGTTCACTTATGTAGGTTACAAGTATTTGATCCTAATCCTCGCCCTCTTCATTTTTCCCCTTCACGTAATAGATATCCTAAAGGCTATGGGATTTTAGGAGATGTTGTACACAGCCACATCTTCCAGACAGTGGCCTTGCTTGCTATGGAGCCGCCTGTCACCCTTGATGGTGAAGATGTTCGTTATGAGAAA : GTTAAGGTTTTGAAATCAATTCGAAAGTTGGAATCATCTGATGTAATTCTTGGGCATAGTGAAGCTGATTCCGGAAGTAACTTCAAGGATATGGAAAACCTTATGCCCACATATTTTGGTGCTGCTTTACACATCGA</gDNA_template>
            <first_frame> *  V  T  F  S  E  E  L  G  M  Q  T  S  A  R  *  P  R  F  Q  F  T  Y  V  G  Y  K  Y  L  I  L  I  L  A  L  F  I  F  P  L  H  V  I  D  I  L  K  A  M  G  F  *  E  M  L  Y  T  A  T  S  S  R  Q  W  P  C  L  L  W  S  R  L  S  P  L  M  V  K  M  F  V  M  R  K :   L  R  F  *  N  Q  F  E  S  W  N  H  L  M  *  F  L  G  I  V  K  L  I  P  E  V  T  S  R  I  W  K  T  L  C  P  H  I  L  V  L  L  Y  T  S  </first_frame>
            <second_frame>  R  S  L  F  L  K  S  *  A  C  R  P  Q  Q  G  S  Q  G  F  S  S  L  M  *  V  T  S  I  *  S  *  S  S  P  S  S  F  F  P  F  T  *  *  I  S  *  R  L  W  D  F  R  R  C  C  T  Q  P  H  L  P  D  S  G  L  A  C  Y  G  A  A  C  H  P  *  W  *  R  C  S  L  *  E   : S  *  G  F  E  I  N  S  K  V  G  I  I  *  C  N  S  W  A  *  *  S  *  F  R  K  *  L  Q  G  Y  G  K  P  Y  A  H  I  F  W  C  C  F  T  H  R </second_frame>
            <third_frame>   G  H  F  F  *  R  V  R  H  A  D  L  S  K  V  A  K  V  S  V  H  L  C  R  L  Q  V  F  D  P  N  P  R  P  L  H  F  S  P  S  R  N  R  Y  P  K  G  Y  G  I  L  G  D  V  V  H  S  H  I  F  Q  T  V  A  L  L  A  M  E  P  P  V  T  L  D  G  E  D  V  R  Y  E  K  :  V  K  V  L  K  S  I  R  K  L  E  S  S  D  V  I  L  G  H  S  E  A  D  S  G  S  N  F  K  D  M  E  N  L  M  P  T  Y  F  G  A  A  L  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6823" stop="7056"/>
                    <exon start="7142" stop="7276"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVRHADLSKVAKVSVHLCRLQVFDPNPRPLHFSPSRNRYPKGYGILGDVVHSHIFQTVALLAMEPPVTLDGEDVRYEKVKVLKSIRKLESSDVILGHSEADSGSNFKDMENLMPTYFGAALHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7668" PGL_stop="8347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7668" e_stop="7814"/>
            <exon e_start="7919" e_stop="8347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.984" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="7668" e_stop="7814" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7815" i_stop="7918" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7919" e_stop="8347" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7668" stop="7814"/>
              <exon start="7919" stop="8347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGGGCATAAGCAAGATCTTGTCACTAATGAGCTGATTCTGCGTGATGTGCCTGATGAGGCCATACTCATCAGAATCAATAACAAAATTCCAGGATTAGGCATGAACTTGGAGGCTTCGGAATTGAACTTGCTTTATAAAGACAA : GTACAATGTTGATGTAACTGATTCGTATGAACAACTTCTTCATGATGTAATAGATGGAGACAACCATCTATTTATGAGAAGCGATGAGGTTGAAGCTGCATGGAACATTTTATCTCCAGTTTTAAGTGAGTTAGACAATAATAATGCGACAATTGAGCATTACGAGTTTGGTAGCAAGGGTCCAGATAAAGCCGGTAATCTCTGGGCTAAACATGGAGTCAAGTGGTTGGATGATTAGTGAATTTCACAGTTATACATCATACAAACACTGAAATTCCTAAAGAAGGAATTATTAGAAATCCACTCTCCATACTTATCTTAGTGATCATTGATTGAGATGGAATCATTGTGAGAAAATTTGCACACCTGTTACACACTACAGAAAAAGTTAAGACTTTAGATTAATGAGATTGATGGCACTAGCTTTTG</gDNA_template>
            <first_frame> R  R  A  *  A  R  S  C  H  *  *  A  D  S  A  *  C  A  *  *  G  H  T  H  Q  N  Q  *  Q  N  S  R  I  R  H  E  L  G  G  F  G  I  E  L  A  L  *  R  Q  :  V  Q  C  *  C  N  *  F  V  *  T  T  S  S  *  C  N  R  W  R  Q  P  S  I  Y  E  K  R  *  G  *  S  C  M  E  H  F  I  S  S  F  K  *  V  R  Q  *  *  C  D  N  *  A  L  R  V  W  *  Q  G  S  R  *  S  R  *  S  L  G  *  T  W  S  Q  V  V  G  *  L  V  N  F  T  V  I  H  H  T  N  T  E  I  P  K  E  G  I  I  R  N  P  L  S  I  L  I  L  V  I  I  D  *  D  G  I  I  V  R  K  F  A  H  L  L  H  T  T  E  K  V  K  T  L  D  *  *  D  *  W  H  *  L  L </first_frame>
            <second_frame>  G  G  H  K  Q  D  L  V  T  N  E  L  I  L  R  D  V  P  D  E  A  I  L  I  R  I  N  N  K  I  P  G  L  G  M  N  L  E  A  S  E  L  N  L  L  Y  K  D  K :   Y  N  V  D  V  T  D  S  Y  E  Q  L  L  H  D  V  I  D  G  D  N  H  L  F  M  R  S  D  E  V  E  A  A  W  N  I  L  S  P  V  L  S  E  L  D  N  N  N  A  T  I  E  H  Y  E  F  G  S  K  G  P  D  K  A  G  N  L  W  A  K  H  G  V  K  W  L  D  D  *  *  I  S  Q  L  Y  I  I  Q  T  L  K  F  L  K  K  E  L  L  E  I  H  S  P  Y  L  S  *  *  S  L  I  E  M  E  S  L  *  E  N  L  H  T  C  Y  T  L  Q  K  K  L  R  L  *  I  N  E  I  D  G  T  S  F   </second_frame>
            <third_frame>   E  G  I  S  K  I  L  S  L  M  S  *  F  C  V  M  C  L  M  R  P  Y  S  S  E  S  I  T  K  F  Q  D  *  A  *  T  W  R  L  R  N  *  T  C  F  I  K  T   : S  T  M  L  M  *  L  I  R  M  N  N  F  F  M  M  *  *  M  E  T  T  I  Y  L  *  E  A  M  R  L  K  L  H  G  T  F  Y  L  Q  F  *  V  S  *  T  I  I  M  R  Q  L  S  I  T  S  L  V  A  R  V  Q  I  K  P  V  I  S  G  L  N  M  E  S  S  G  W  M  I  S  E  F  H  S  Y  T  S  Y  K  H  *  N  S  *  R  R  N  Y  *  K  S  T  L  H  T  Y  L  S  D  H  *  L  R  W  N  H  C  E  K  I  C  T  P  V  T  H  Y  R  K  S  *  D  F  R  L  M  R  L  M  A  L  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7669" stop="7814"/>
                    <exon start="7919" stop="8156"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGHKQDLVTNELILRDVPDEAILIRINNKIPGLGMNLEASELNLLYKDKYNVDVTDSYEQLLHDVIDGDNHLFMRSDEVEAAWNILSPVLSELDNNNATIEHYEFGSKGPDKAGNLWAKHGVKWLDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12578" PGL_stop="13112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12578" e_stop="13112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="12578" e_stop="13112" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12578" stop="13112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGTTGCATTGCCTTAATTTTTGTTTCACATCAAGAGATTATGGATAGAGAGAGAAGGAAGAGGAAGAATTTGGAGAATGAGAGATTAGAAAAGGAAGAGGAAGATGAAGATGAAGATGAGAAAATTGACAAGTTTTTTGCTCTTATAAGAAGCACTAAAGATTTACGTGACCGTTTGTTAGCAAGAAATCAAGTAACAGAGAGATCCAAAATTTTGGAAGAAAACAGAGATTCAGTTCATAACAATTCTGCAGTTGGAATTTGGAATCCATCAGTTCATGAATCACGAGATTTCATGGTAATTGAGGCTTCTGCAATTGCAGGTCCTTCCAATTCTAACTCCAACAAACAAAGCAAAGAAGTAGAAGAAGATGAAACAGGAGGACAAAGGGAAGGAACAAAAAATGAAGAAAAAAAATGTAATATGTTAGACTTGGACCTCAATCTTTCACTGTAAGCTAGTTCTTTTTTTTTTTTAGTTTACTGGTTCGATTAATTTATTTTCGCACTCAAATCGGAATACTTATGATAA</gDNA_template>
            <first_frame> I  L  L  H  C  L  N  F  C  F  T  S  R  D  Y  G  *  R  E  K  E  E  E  E  F  G  E  *  E  I  R  K  G  R  G  R  *  R  *  R  *  E  N  *  Q  V  F  C  S  Y  K  K  H  *  R  F  T  *  P  F  V  S  K  K  S  S  N  R  E  I  Q  N  F  G  R  K  Q  R  F  S  S  *  Q  F  C  S  W  N  L  E  S  I  S  S  *  I  T  R  F  H  G  N  *  G  F  C  N  C  R  S  F  Q  F  *  L  Q  Q  T  K  Q  R  S  R  R  R  *  N  R  R  T  K  G  R  N  K  K  *  R  K  K  M  *  Y  V  R  L  G  P  Q  S  F  T  V  S  *  F  F  F  F  F  S  L  L  V  R  L  I  Y  F  R  T  Q  I  G  I  L  M  I  </first_frame>
            <second_frame>  F  C  C  I  A  L  I  F  V  S  H  Q  E  I  M  D  R  E  R  R  K  R  K  N  L  E  N  E  R  L  E  K  E  E  E  D  E  D  E  D  E  K  I  D  K  F  F  A  L  I  R  S  T  K  D  L  R  D  R  L  L  A  R  N  Q  V  T  E  R  S  K  I  L  E  E  N  R  D  S  V  H  N  N  S  A  V  G  I  W  N  P  S  V  H  E  S  R  D  F  M  V  I  E  A  S  A  I  A  G  P  S  N  S  N  S  N  K  Q  S  K  E  V  E  E  D  E  T  G  G  Q  R  E  G  T  K  N  E  E  K  K  C  N  M  L  D  L  D  L  N  L  S  L  *  A  S  S  F  F  F  L  V  Y  W  F  D  *  F  I  F  A  L  K  S  E  Y  L  *  * </second_frame>
            <third_frame>   F  V  A  L  P  *  F  L  F  H  I  K  R  L  W  I  E  R  E  G  R  G  R  I  W  R  M  R  D  *  K  R  K  R  K  M  K  M  K  M  R  K  L  T  S  F  L  L  L  *  E  A  L  K  I  Y  V  T  V  C  *  Q  E  I  K  *  Q  R  D  P  K  F  W  K  K  T  E  I  Q  F  I  T  I  L  Q  L  E  F  G  I  H  Q  F  M  N  H  E  I  S  W  *  L  R  L  L  Q  L  Q  V  L  P  I  L  T  P  T  N  K  A  K  K  *  K  K  M  K  Q  E  D  K  G  K  E  Q  K  M  K  K  K  N  V  I  C  *  T  W  T  S  I  F  H  C  K  L  V  L  F  F  F  *  F  T  G  S  I  N  L  F  S  H  S  N  R  N  T  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12579" stop="13037"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCCIALIFVSHQEIMDRERRKRKNLENERLEKEEEDEDEDEKIDKFFALIRSTKDLRDRLLARNQVTERSKILEENRDSVHNNSAVGIWNPSVHESRDFMVIEASAIAGPSNSNSNKQSKEVEEDETGGQREGTKNEEKKCNMLDLDLNLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17217" PGL_stop="14068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17217" e_stop="16938"/>
            <exon e_start="15989" e_stop="15804"/>
            <exon e_start="15675" e_stop="15515"/>
            <exon e_start="15264" e_stop="14994"/>
            <exon e_start="14549" e_stop="14068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="0.981"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17217" e_stop="16938" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16937" i_stop="15990" i_length="948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15989" e_stop="15804" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15803" i_stop="15676" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="15675" e_stop="15515" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="15514" i_stop="15265" i_length="250"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15264" e_stop="14994" e_length="271"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14993" i_stop="14550" i_length="444"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="14549" e_stop="14068" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17217" stop="16938"/>
              <exon start="15989" stop="15804"/>
              <exon start="15675" stop="15515"/>
              <exon start="15264" stop="15139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15264" stop="14994"/>
              <exon start="14549" stop="14068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCAAAATAACATGGGTTGCCTCTCATGTTTGCCGCACATATTACAAGCTTCAGCTTACATTATACTTTTCATTTTTTTCATTCTCTCCTCTTTCTCAAACCCAGTTCAATCTCAGTGTAAAAATAGACCAGTCATTTTCAATTTTGGTGATTCTAATTCGGATACGGGTGGACTCGTTGCCGGACTCGGGTACCCCATTAACCTTCCAAATGGTCGAAATTTTTTCCGCCGTTCAACTGGCCGTCTCTCTGATGGCCGCCTTATTCTCGATTTTCTAT : GTCAAAGTGTTAATACAAGGTTCCTGTGCCCATACCTAGACTCTGTCGGATCTAGTTTCTTGAATGGAGCAAATTTTGCTATAGCGGGATCCCGGTTACTACCCAAGTATGAACCATTCGCCTTAAATATTCAAGTCTTGCAGTTCCTTCATTTCAAGGATCGCTCAATTGAACTTGTTAGTGCTG : GGTCTGGAAATTTAGTTGGTGATGAAGGATTTCGAAATGCTCTTTTCATGATAGATATTGGACAGAATGACCTAGCCGATTCATTTGCTAAGAACCTGTCTTACACAGAAGTAGTCAAGATGATCCCCTCCTTTGTTACAGAGATCAGGAATGCAATTCAG : GTCATATATTCTCAAGGAGGAAGAAAATTTTGGGTCCACAACACCGGACCATTAGGATGCCTGCCTCAAAAACTTACTCTGGTTCAGAAAGTTTCTTCTGATCTCGATCCGCATGGCTGTCTGGCAAATTACAACTCCGCTGCTAAACTGTTTAATGAAGGGCTTCGACATTTGTTGCAAGAGTTGAGATCTGAAATGAAGGATGCTACTATGGTGTATGTAGACATATATGCTATCAAATATGATCTTATAGCCAACTCCAGCAGTTATG : GCTTCTCAAATCCGTTAATGGCTTGCTGTGGCTATGGAGGTCCTCCGTACAACTACCGTAAAGGAGTGACATGCGGTCAGCATGATTATCAGGTTTGCAGTGAAGGGTCTGAGTTCATAAGTTGGGATGGAGTTCATTATACCGAGGCAGCTAATAGAGTTATAGCTTCTAAGATACTGTCAATGGACTACTCCACTCCACGAATTGGCTTCGATTTCTTTTGCCATTGATTGTCATTTGCTAGAATAAAGTGCAAGCATGAATTGATATATGTTGCTTCAGAGTATTATGAAAAATATTTAATTTGGAAAAATAGAAAAAATGATTGGTTATAAGAAAGAGGCCAGGTAAACTTTTTGCTCTTAGTTTTGAAGTCACGATCCCCTTTTCAGTCCAGTTTTCCCTGTTATTTTAGGCATCTATAATGTATTAATTAATGTTGTAAGCAAGTCTTATGATATTAATTATTAAACCCATTAAGT</gDNA_template>
            <first_frame> E  Q  N  N  M  G  C  L  S  C  L  P  H  I  L  Q  A  S  A  Y  I  I  L  F  I  F  F  I  L  S  S  F  S  N  P  V  Q  S  Q  C  K  N  R  P  V  I  F  N  F  G  D  S  N  S  D  T  G  G  L  V  A  G  L  G  Y  P  I  N  L  P  N  G  R  N  F  F  R  R  S  T  G  R  L  S  D  G  R  L  I  L  D  F  L   : C  Q  S  V  N  T  R  F  L  C  P  Y  L  D  S  V  G  S  S  F  L  N  G  A  N  F  A  I  A  G  S  R  L  L  P  K  Y  E  P  F  A  L  N  I  Q  V  L  Q  F  L  H  F  K  D  R  S  I  E  L  V  S  A   : G  S  G  N  L  V  G  D  E  G  F  R  N  A  L  F  M  I  D  I  G  Q  N  D  L  A  D  S  F  A  K  N  L  S  Y  T  E  V  V  K  M  I  P  S  F  V  T  E  I  R  N  A  I  Q  :  V  I  Y  S  Q  G  G  R  K  F  W  V  H  N  T  G  P  L  G  C  L  P  Q  K  L  T  L  V  Q  K  V  S  S  D  L  D  P  H  G  C  L  A  N  Y  N  S  A  A  K  L  F  N  E  G  L  R  H  L  L  Q  E  L  R  S  E  M  K  D  A  T  M  V  Y  V  D  I  Y  A  I  K  Y  D  L  I  A  N  S  S  S  Y   : G  F  S  N  P  L  M  A  C  C  G  Y  G  G  P  P  Y  N  Y  R  K  G  V  T  C  G  Q  H  D  Y  Q  V  C  S  E  G  S  E  F  I  S  W  D  G  V  H  Y  T  E  A  A  N  R  V  I  A  S  K  I  L  S  M  D  Y  S  T  P  R  I  G  F  D  F  F  C  H  *  L  S  F  A  R  I  K  C  K  H  E  L  I  Y  V  A  S  E  Y  Y  E  K  Y  L  I  W  K  N  R  K  N  D  W  L  *  E  R  G  Q  V  N  F  L  L  L  V  L  K  S  R  S  P  F  Q  S  S  F  P  C  Y  F  R  H  L  *  C  I  N  *  C  C  K  Q  V  L  *  Y  *  L  L  N  P  L  S </first_frame>
            <second_frame>  S  K  I  T  W  V  A  S  H  V  C  R  T  Y  Y  K  L  Q  L  T  L  Y  F  S  F  F  S  F  S  P  L  S  Q  T  Q  F  N  L  S  V  K  I  D  Q  S  F  S  I  L  V  I  L  I  R  I  R  V  D  S  L  P  D  S  G  T  P  L  T  F  Q  M  V  E  I  F  S  A  V  Q  L  A  V  S  L  M  A  A  L  F  S  I  F  Y  :  V  K  V  L  I  Q  G  S  C  A  H  T  *  T  L  S  D  L  V  S  *  M  E  Q  I  L  L  *  R  D  P  G  Y  Y  P  S  M  N  H  S  P  *  I  F  K  S  C  S  S  F  I  S  R  I  A  Q  L  N  L  L  V  L  :  G  L  E  I  *  L  V  M  K  D  F  E  M  L  F  S  *  *  I  L  D  R  M  T  *  P  I  H  L  L  R  T  C  L  T  Q  K  *  S  R  *  S  P  P  L  L  Q  R  S  G  M  Q  F  R :   S  Y  I  L  K  E  E  E  N  F  G  S  T  T  P  D  H  *  D  A  C  L  K  N  L  L  W  F  R  K  F  L  L  I  S  I  R  M  A  V  W  Q  I  T  T  P  L  L  N  C  L  M  K  G  F  D  I  C  C  K  S  *  D  L  K  *  R  M  L  L  W  C  M  *  T  Y  M  L  S  N  M  I  L  *  P  T  P  A  V  M  :  A  S  Q  I  R  *  W  L  A  V  A  M  E  V  L  R  T  T  T  V  K  E  *  H  A  V  S  M  I  I  R  F  A  V  K  G  L  S  S  *  V  G  M  E  F  I  I  P  R  Q  L  I  E  L  *  L  L  R  Y  C  Q  W  T  T  P  L  H  E  L  A  S  I  S  F  A  I  D  C  H  L  L  E  *  S  A  S  M  N  *  Y  M  L  L  Q  S  I  M  K  N  I  *  F  G  K  I  E  K  M  I  G  Y  K  K  E  A  R  *  T  F  C  S  *  F  *  S  H  D  P  L  F  S  P  V  F  P  V  I  L  G  I  Y  N  V  L  I  N  V  V  S  K  S  Y  D  I  N  Y  *  T  H  *   </second_frame>
            <third_frame>   A  K  *  H  G  L  P  L  M  F  A  A  H  I  T  S  F  S  L  H  Y  T  F  H  F  F  H  S  L  L  F  L  K  P  S  S  I  S  V  *  K  *  T  S  H  F  Q  F  W  *  F  *  F  G  Y  G  W  T  R  C  R  T  R  V  P  H  *  P  S  K  W  S  K  F  F  P  P  F  N  W  P  S  L  *  W  P  P  Y  S  R  F  S  M :   S  K  C  *  Y  K  V  P  V  P  I  P  R  L  C  R  I  *  F  L  E  W  S  K  F  C  Y  S  G  I  P  V  T  T  Q  V  *  T  I  R  L  K  Y  S  S  L  A  V  P  S  F  Q  G  S  L  N  *  T  C  *  C  W :   V  W  K  F  S  W  *  *  R  I  S  K  C  S  F  H  D  R  Y  W  T  E  *  P  S  R  F  I  C  *  E  P  V  L  H  R  S  S  Q  D  D  P  L  L  C  Y  R  D  Q  E  C  N  S   : G  H  I  F  S  R  R  K  K  I  L  G  P  Q  H  R  T  I  R  M  P  A  S  K  T  Y  S  G  S  E  S  F  F  *  S  R  S  A  W  L  S  G  K  L  Q  L  R  C  *  T  V  *  *  R  A  S  T  F  V  A  R  V  E  I  *  N  E  G  C  Y  Y  G  V  C  R  H  I  C  Y  Q  I  *  S  Y  S  Q  L  Q  Q  L  W :   L  L  K  S  V  N  G  L  L  W  L  W  R  S  S  V  Q  L  P  *  R  S  D  M  R  S  A  *  L  S  G  L  Q  *  R  V  *  V  H  K  L  G  W  S  S  L  Y  R  G  S  *  *  S  Y  S  F  *  D  T  V  N  G  L  L  H  S  T  N  W  L  R  F  L  L  P  L  I  V  I  C  *  N  K  V  Q  A  *  I  D  I  C  C  F  R  V  L  *  K  I  F  N  L  E  K  *  K  K  *  L  V  I  R  K  R  P  G  K  L  F  A  L  S  F  E  V  T  I  P  F  S  V  Q  F  S  L  L  F  *  A  S  I  M  Y  *  L  M  L  *  A  S  L  M  I  L  I  I  K  P  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17217" stop="16938"/>
                    <exon start="15989" stop="15804"/>
                    <exon start="15675" stop="15515"/>
                    <exon start="15264" stop="14994"/>
                    <exon start="14549" stop="14320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQNNMGCLSCLPHILQASAYIILFIFFILSSFSNPVQSQCKNRPVIFNFGDSNSDTGGLVAGLGYPINLPNGRNFFRRSTGRLSDGRLILDFLCQSVNTRFLCPYLDSVGSSFLNGANFAIAGSRLLPKYEPFALNIQVLQFLHFKDRSIELVSAGSGNLVGDEGFRNALFMIDIGQNDLADSFAKNLSYTEVVKMIPSFVTEIRNAIQVIYSQGGRKFWVHNTGPLGCLPQKLTLVQKVSSDLDPHGCLANYNSAAKLFNEGLRHLLQELRSEMKDATMVYVDIYAIKYDLIANSSSYGFSNPLMACCGYGGPPYNYRKGVTCGQHDYQVCSEGSEFISWDGVHYTEAANRVIASKILSMDYSTPRIGFDFFCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25597" PGL_stop="31231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25597" e_stop="25939"/>
            <exon e_start="26508" e_stop="26795"/>
            <exon e_start="28803" e_stop="28907"/>
            <exon e_start="29016" e_stop="29063"/>
            <exon e_start="30724" e_stop="31231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.977"/>
          <exon-intron don_prob="0.639" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="25597" e_stop="25939" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="25940" i_stop="26507" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26508" e_stop="26795" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.639" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26796" i_stop="28802" i_length="2007"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28803" e_stop="28907" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28908" i_stop="29015" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29016" e_stop="29063" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29064" i_stop="30723" i_length="1660"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="30724" e_stop="31231" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25597" stop="25939"/>
              <exon start="26508" stop="26795"/>
              <exon start="28803" stop="28907"/>
              <exon start="29016" stop="29063"/>
              <exon start="30724" stop="31231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAAAGGAGGTTAAAGTTAAGGCAATTATCTGAGAAGTGAGATTATTGCAATTTGCAAGTCAAGAAGGCAAAACAAACAAACAACAAAGTCATGACAATAATTACGTAAAACATATTTTATAATAATAATATGATTTCTTGTTTTATATTATAACAACCCACCACTACCACGTTCTTTATCCATATTTTTTTTAATTATTTTAATAATATTCCAAAATTTTACTCATCAATAATGAAGAATCCCAATCAGTAGTCTTCTACCATTATAATCACCTTTTGATCAGATAAGACCACTTGCTTCAGTCCTTTATTCTTTTGGCTCTCTCTCTTTCAGCTTTCAG : TTTCGTCTGTCTAGGGGATACATGGGGTCTGAAGGGCCTTCACCTGTGATCGTACATGTAACTGGTTTCAAGAAATTTCATGGAGTTGCTGAAAATCCAACAGAAACCATTGTAAGTAATCTTAAAGATTATATGAAGAAAAGGGGTATGCCCAAAGGGCTGATCCTTGGGAATTGCAGCATCCTTGATACTGCAGGCCAGGGAGCCCTAGTTCCCTTATATCAGACACTGCAAGCTGGTTTAAGCGGTGGTGACTCGGAGTCATCTAATTCCAAGAGAGTTATTTGG : GTACACTTTGGAGTTAATAGTGGTGCCACAATGTTTGCCATAGAGAATCAGGCTGTCAATGAAGCTACTTTCCGTTGTCCAGATGAGATGGGATGGAAACCTCAG : AAAGTACCTATTGTTCCTGCAGATGGGGCAATTTCGCGTAAACGAGAG : ACTTCTCTTCCGGTGGAGGAAATGACCAAGGTATTGGCAAAGATGGGATATGAAGTAATGACCTCTGATGATGCAGGCCGGTTTGTATGCAATTATGTATACTACCATTCCTTGCGTTTTGCAGAGCATAATGGTGTCCGATCACTATTTGTACACGTTCCCCTCTTCCTAACCATAGACGAGGAGACGCAAATGCAATTTGCTGCTTCTTTGCTGGAGCTACTCGCCTCTTCATACTAGTCCTCGACTTCTGTGTCTGGAAGTGTATTTGCCTTGTTATTTATGCTGTGTATGCGGAAGAAGGTTGATCTGGATATAAATGTAATGCTTTAATAAACAGTGAACTTTTAGTGAATGGCAAATGCATATGGTGTGTACATGTATCTTCCTCAACATTCCTTGGGTGGTTTATCTCGTTGATTTGGAGATGTTTCATGCCTATTTGCGAGCAAACTTACAGCTTTCTGTATCTCCTAATGGATATGATAGGAACTTGTCCTTCAATTTA</gDNA_template>
            <first_frame> G  K  R  R  L  K  L  R  Q  L  S  E  K  *  D  Y  C  N  L  Q  V  K  K  A  K  Q  T  N  N  K  V  M  T  I  I  T  *  N  I  F  Y  N  N  N  M  I  S  C  F  I  L  *  Q  P  T  T  T  T  F  F  I  H  I  F  F  N  Y  F  N  N  I  P  K  F  Y  S  S  I  M  K  N  P  N  Q  *  S  S  T  I  I  I  T  F  *  S  D  K  T  T  C  F  S  P  L  F  F  W  L  S  L  F  Q  L  S   : V  S  S  V  *  G  I  H  G  V  *  R  A  F  T  C  D  R  T  C  N  W  F  Q  E  I  S  W  S  C  *  K  S  N  R  N  H  C  K  *  S  *  R  L  Y  E  E  K  G  Y  A  Q  R  A  D  P  W  E  L  Q  H  P  *  Y  C  R  P  G  S  P  S  S  L  I  S  D  T  A  S  W  F  K  R  W  *  L  G  V  I  *  F  Q  E  S  Y  L   : G  T  L  W  S  *  *  W  C  H  N  V  C  H  R  E  S  G  C  Q  *  S  Y  F  P  L  S  R  *  D  G  M  E  T  S   : E  S  T  Y  C  S  C  R  W  G  N  F  A  *  T  R   : D  F  S  S  G  G  G  N  D  Q  G  I  G  K  D  G  I  *  S  N  D  L  *  *  C  R  P  V  C  M  Q  L  C  I  L  P  F  L  A  F  C  R  A  *  W  C  P  I  T  I  C  T  R  S  P  L  P  N  H  R  R  G  D  A  N  A  I  C  C  F  F  A  G  A  T  R  L  F  I  L  V  L  D  F  C  V  W  K  C  I  C  L  V  I  Y  A  V  Y  A  E  E  G  *  S  G  Y  K  C  N  A  L  I  N  S  E  L  L  V  N  G  K  C  I  W  C  V  H  V  S  S  S  T  F  L  G  W  F  I  S  L  I  W  R  C  F  M  P  I  C  E  Q  T  Y  S  F  L  Y  L  L  M  D  M  I  G  T  C  P  S  I   </first_frame>
            <second_frame>  G  K  G  G  *  S  *  G  N  Y  L  R  S  E  I  I  A  I  C  K  S  R  R  Q  N  K  Q  T  T  K  S  *  Q  *  L  R  K  T  Y  F  I  I  I  I  *  F  L  V  L  Y  Y  N  N  P  P  L  P  R  S  L  S  I  F  F  L  I  I  L  I  I  F  Q  N  F  T  H  Q  *  *  R  I  P  I  S  S  L  L  P  L  *  S  P  F  D  Q  I  R  P  L  A  S  V  L  Y  S  F  G  S  L  S  F  S  F  Q  :  F  R  L  S  R  G  Y  M  G  S  E  G  P  S  P  V  I  V  H  V  T  G  F  K  K  F  H  G  V  A  E  N  P  T  E  T  I  V  S  N  L  K  D  Y  M  K  K  R  G  M  P  K  G  L  I  L  G  N  C  S  I  L  D  T  A  G  Q  G  A  L  V  P  L  Y  Q  T  L  Q  A  G  L  S  G  G  D  S  E  S  S  N  S  K  R  V  I  W  :  V  H  F  G  V  N  S  G  A  T  M  F  A  I  E  N  Q  A  V  N  E  A  T  F  R  C  P  D  E  M  G  W  K  P  Q  :  K  V  P  I  V  P  A  D  G  A  I  S  R  K  R  E  :  T  S  L  P  V  E  E  M  T  K  V  L  A  K  M  G  Y  E  V  M  T  S  D  D  A  G  R  F  V  C  N  Y  V  Y  Y  H  S  L  R  F  A  E  H  N  G  V  R  S  L  F  V  H  V  P  L  F  L  T  I  D  E  E  T  Q  M  Q  F  A  A  S  L  L  E  L  L  A  S  S  Y  *  S  S  T  S  V  S  G  S  V  F  A  L  L  F  M  L  C  M  R  K  K  V  D  L  D  I  N  V  M  L  *  *  T  V  N  F  *  *  M  A  N  A  Y  G  V  Y  M  Y  L  P  Q  H  S  L  G  G  L  S  R  *  F  G  D  V  S  C  L  F  A  S  K  L  T  A  F  C  I  S  *  W  I  *  *  E  L  V  L  Q  F  </second_frame>
            <third_frame>   E  K  E  V  K  V  K  A  I  I  *  E  V  R  L  L  Q  F  A  S  Q  E  G  K  T  N  K  Q  Q  S  H  D  N  N  Y  V  K  H  I  L  *  *  *  Y  D  F  L  F  Y  I  I  T  T  H  H  Y  H  V  L  Y  P  Y  F  F  *  L  F  *  *  Y  S  K  I  L  L  I  N  N  E  E  S  Q  S  V  V  F  Y  H  Y  N  H  L  L  I  R  *  D  H  L  L  Q  S  F  I  L  L  A  L  S  L  S  A  F  S :   F  V  C  L  G  D  T  W  G  L  K  G  L  H  L  *  S  Y  M  *  L  V  S  R  N  F  M  E  L  L  K  I  Q  Q  K  P  L  *  V  I  L  K  I  I  *  R  K  G  V  C  P  K  G  *  S  L  G  I  A  A  S  L  I  L  Q  A  R  E  P  *  F  P  Y  I  R  H  C  K  L  V  *  A  V  V  T  R  S  H  L  I  P  R  E  L  F  G :   Y  T  L  E  L  I  V  V  P  Q  C  L  P  *  R  I  R  L  S  M  K  L  L  S  V  V  Q  M  R  W  D  G  N  L  R :   K  Y  L  L  F  L  Q  M  G  Q  F  R  V  N  E  R :   L  L  F  R  W  R  K  *  P  R  Y  W  Q  R  W  D  M  K  *  *  P  L  M  M  Q  A  G  L  Y  A  I  M  Y  T  T  I  P  C  V  L  Q  S  I  M  V  S  D  H  Y  L  Y  T  F  P  S  S  *  P  *  T  R  R  R  K  C  N  L  L  L  L  C  W  S  Y  S  P  L  H  T  S  P  R  L  L  C  L  E  V  Y  L  P  C  Y  L  C  C  V  C  G  R  R  L  I  W  I  *  M  *  C  F  N  K  Q  *  T  F  S  E  W  Q  M  H  M  V  C  T  C  I  F  L  N  I  P  W  V  V  Y  L  V  D  L  E  M  F  H  A  Y  L  R  A  N  L  Q  L  S  V  S  P  N  G  Y  D  R  N  L  S  F  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25868" stop="25939"/>
                    <exon start="26508" stop="26795"/>
                    <exon start="28803" stop="28907"/>
                    <exon start="29016" stop="29063"/>
                    <exon start="30724" stop="30963"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPFDQIRPLASVLYSFGSLSFSFQFRLSRGYMGSEGPSPVIVHVTGFKKFHGVAENPTETIVSNLKDYMKKRGMPKGLILGNCSILDTAGQGALVPLYQTLQAGLSGGDSESSNSKRVIWVHFGVNSGATMFAIENQAVNEATFRCPDEMGWKPQKVPIVPADGAISRKRETSLPVEEMTKVLAKMGYEVMTSDDAGRFVCNYVYYHSLRFAEHNGVRSLFVHVPLFLTIDEETQMQFAASLLELLASSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31032" stop="31229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYKCNALINSELLVNGKCIWCVHVSSSTFLGWFISLIWRCFMPICEQTYSFLYLLMDMIGTCPSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29561" e_stop="30324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="29561" e_stop="30324" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29561" stop="30324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGAAATAGACACAGAGCACTGAGCTGAGGAAGTAACTTGTAAACACAAAGTCATAAGCTTTTTGGAAGCTCAAGATTGTTGGTTCACTGTCCATGCTTATACATGCTAAACCTTGAGTTAAATGCTTAATATTCCAGCCTCAATGGTTCTCTTTCCTTTTCTGGTCATATTCTTCATAATCCTTTAAATGCACCAGGACCGGATGGAAAGATATGGACCTATGTTGCGAGGGTTGATTCTTCATTTTATGATATACAGTTCGAATCCAATTTCTTCTCTCAAGTATTCCGAGCTCATGAACTTTTTAAAGATTTTTATTCATTTATTTTTACTGAAAAATATTCTAGTTTCCAGGGATTATGACATTGTGAACTGTTACCAAGACCAATAACCGTGGCTTCTAAATTATTTCACTTTTGCTTTGCTTCATACTATCTCAGTCACTTTTGTGACTTCCTTGAGGAGGGAGGAGCTGATGAATAACGAAGTGGTGTAGTGCTTGTTGGAAATATATTTCCTATCTTGAATAGTTGGAGTTGCCATCCAAGCTAAACACTAATTTCTCCATCTTATATATACATGATTTTCCTTGATATGTTTTCATTTCCATACCTTTATTTGATTCAGGGATCCCTGCATAATCAGTTCTTTCAATTTTCCCTATCTACCTAAGAACGGACGGTCTGCGATACATGGATCTTGGATCGAGAAACCGTATCGAAGCTCCGGGTCTAGTCTGTGTACTTTGGACTTTTCGAACTT</gDNA_template>
            <first_frame> L  E  I  D  T  E  H  *  A  E  E  V  T  C  K  H  K  V  I  S  F  L  E  A  Q  D  C  W  F  T  V  H  A  Y  T  C  *  T  L  S  *  M  L  N  I  P  A  S  M  V  L  F  P  F  L  V  I  F  F  I  I  L  *  M  H  Q  D  R  M  E  R  Y  G  P  M  L  R  G  L  I  L  H  F  M  I  Y  S  S  N  P  I  S  S  L  K  Y  S  E  L  M  N  F  L  K  I  F  I  H  L  F  L  L  K  N  I  L  V  S  R  D  Y  D  I  V  N  C  Y  Q  D  Q  *  P  W  L  L  N  Y  F  T  F  A  L  L  H  T  I  S  V  T  F  V  T  S  L  R  R  E  E  L  M  N  N  E  V  V  *  C  L  L  E  I  Y  F  L  S  *  I  V  G  V  A  I  Q  A  K  H  *  F  L  H  L  I  Y  T  *  F  S  L  I  C  F  H  F  H  T  F  I  *  F  R  D  P  C  I  I  S  S  F  N  F  P  Y  L  P  K  N  G  R  S  A  I  H  G  S  W  I  E  K  P  Y  R  S  S  G  S  S  L  C  T  L  D  F  S  N   </first_frame>
            <second_frame>  W  K  *  T  Q  S  T  E  L  R  K  *  L  V  N  T  K  S  *  A  F  W  K  L  K  I  V  G  S  L  S  M  L  I  H  A  K  P  *  V  K  C  L  I  F  Q  P  Q  W  F  S  F  L  F  W  S  Y  S  S  *  S  F  K  C  T  R  T  G  W  K  D  M  D  L  C  C  E  G  *  F  F  I  L  *  Y  T  V  R  I  Q  F  L  L  S  S  I  P  S  S  *  T  F  *  R  F  L  F  I  Y  F  Y  *  K  I  F  *  F  P  G  I  M  T  L  *  T  V  T  K  T  N  N  R  G  F  *  I  I  S  L  L  L  C  F  I  L  S  Q  S  L  L  *  L  P  *  G  G  R  S  *  *  I  T  K  W  C  S  A  C  W  K  Y  I  S  Y  L  E  *  L  E  L  P  S  K  L  N  T  N  F  S  I  L  Y  I  H  D  F  P  *  Y  V  F  I  S  I  P  L  F  D  S  G  I  P  A  *  S  V  L  S  I  F  P  I  Y  L  R  T  D  G  L  R  Y  M  D  L  G  S  R  N  R  I  E  A  P  G  L  V  C  V  L  W  T  F  R  T  </second_frame>
            <third_frame>   G  N  R  H  R  A  L  S  *  G  S  N  L  *  T  Q  S  H  K  L  F  G  S  S  R  L  L  V  H  C  P  C  L  Y  M  L  N  L  E  L  N  A  *  Y  S  S  L  N  G  S  L  S  F  S  G  H  I  L  H  N  P  L  N  A  P  G  P  D  G  K  I  W  T  Y  V  A  R  V  D  S  S  F  Y  D  I  Q  F  E  S  N  F  F  S  Q  V  F  R  A  H  E  L  F  K  D  F  Y  S  F  I  F  T  E  K  Y  S  S  F  Q  G  L  *  H  C  E  L  L  P  R  P  I  T  V  A  S  K  L  F  H  F  C  F  A  S  Y  Y  L  S  H  F  C  D  F  L  E  E  G  G  A  D  E  *  R  S  G  V  V  L  V  G  N  I  F  P  I  L  N  S  W  S  C  H  P  S  *  T  L  I  S  P  S  Y  I  Y  M  I  F  L  D  M  F  S  F  P  Y  L  Y  L  I  Q  G  S  L  H  N  Q  F  F  Q  F  S  L  S  T  *  E  R  T  V  C  D  T  W  I  L  D  R  E  T  V  S  K  L  R  V  *  S  V  Y  F  G  L  F  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29692" stop="29925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSSLNGSLSFSGHILHNPLNAPGPDGKIWTYVARVDSSFYDIQFESNFFSQVFRAHELFKDFYSFIFTEKYSSFQGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29750" stop="29953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHQDRMERYGPMLRGLILHFMIYSSNPISSLKYSELMNFLKIFIHLFLLKNILVSRDYDIVNCYQDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32498" PGL_stop="33134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32498" e_stop="33134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="32498" e_stop="33134" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32498" stop="33134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTAAAATATACTACTTTTATATCATTAACAAAATGGATACATGCTTACAGTTAAGTTTTAGTCCTCTCTGGAACAAGACTAGAAGAGCTAAAACTTTAATACATACTATTAAGTACTCCATCTTTTACAAGTTTGTATTTCTTAGCAAATCATGTATCAGCATTGATCAAGATCATTACTTGGTAATGACTGAGGTGTGCCTTCCAACAAGCAAAAAACTGGTGGAATTGTAAGAGTAATTAGAGCACCATAAGCATTCCAACAAAATGGTTCCAAGATTTTTTGTCCTTGAGCAGGATATAACTCCACATCCAAAAAAGTCAAATTTGTGCAAGGGACACTGTTACTACAAGCCAAATGCATTGGTGGACTTCTCACATCATAAGTACCCTTTATGTTTGAATAAATCACATCAGATATGTACACTGCTGAAGTCTGATTTGCACAGCTCTTTGTGCTGCAGTAATATTGATCTAAAATTATCGGATTTCGAACACTTTCCATTCTAATGTTGTTGAAATTAATGTTGGATACTGTCCCAAATCCTCCTTGCCATGTCTTGATCCTAACACCATTGTCTGAATACTTAATAGTTGAATCTTCCACTGTAATGTTGGATACACATGCCCGGGAA</gDNA_template>
            <first_frame> D  L  K  Y  T  T  F  I  S  L  T  K  W  I  H  A  Y  S  *  V  L  V  L  S  G  T  R  L  E  E  L  K  L  *  Y  I  L  L  S  T  P  S  F  T  S  L  Y  F  L  A  N  H  V  S  A  L  I  K  I  I  T  W  *  *  L  R  C  A  F  Q  Q  A  K  N  W  W  N  C  K  S  N  *  S  T  I  S  I  P  T  K  W  F  Q  D  F  L  S  L  S  R  I  *  L  H  I  Q  K  S  Q  I  C  A  R  D  T  V  T  T  S  Q  M  H  W  W  T  S  H  I  I  S  T  L  Y  V  *  I  N  H  I  R  Y  V  H  C  *  S  L  I  C  T  A  L  C  A  A  V  I  L  I  *  N  Y  R  I  S  N  T  F  H  S  N  V  V  E  I  N  V  G  Y  C  P  K  S  S  L  P  C  L  D  P  N  T  I  V  *  I  L  N  S  *  I  F  H  C  N  V  G  Y  T  C  P  G  </first_frame>
            <second_frame>  I  *  N  I  L  L  L  Y  H  *  Q  N  G  Y  M  L  T  V  K  F  *  S  S  L  E  Q  D  *  K  S  *  N  F  N  T  Y  Y  *  V  L  H  L  L  Q  V  C  I  S  *  Q  I  M  Y  Q  H  *  S  R  S  L  L  G  N  D  *  G  V  P  S  N  K  Q  K  T  G  G  I  V  R  V  I  R  A  P  *  A  F  Q  Q  N  G  S  K  I  F  C  P  *  A  G  Y  N  S  T  S  K  K  V  K  F  V  Q  G  T  L  L  L  Q  A  K  C  I  G  G  L  L  T  S  *  V  P  F  M  F  E  *  I  T  S  D  M  Y  T  A  E  V  *  F  A  Q  L  F  V  L  Q  *  Y  *  S  K  I  I  G  F  R  T  L  S  I  L  M  L  L  K  L  M  L  D  T  V  P  N  P  P  C  H  V  L  I  L  T  P  L  S  E  Y  L  I  V  E  S  S  T  V  M  L  D  T  H  A  R  E </second_frame>
            <third_frame>   F  K  I  Y  Y  F  Y  I  I  N  K  M  D  T  C  L  Q  L  S  F  S  P  L  W  N  K  T  R  R  A  K  T  L  I  H  T  I  K  Y  S  I  F  Y  K  F  V  F  L  S  K  S  C  I  S  I  D  Q  D  H  Y  L  V  M  T  E  V  C  L  P  T  S  K  K  L  V  E  L  *  E  *  L  E  H  H  K  H  S  N  K  M  V  P  R  F  F  V  L  E  Q  D  I  T  P  H  P  K  K  S  N  L  C  K  G  H  C  Y  Y  K  P  N  A  L  V  D  F  S  H  H  K  Y  P  L  C  L  N  K  S  H  Q  I  C  T  L  L  K  S  D  L  H  S  S  L  C  C  S  N  I  D  L  K  L  S  D  F  E  H  F  P  F  *  C  C  *  N  *  C  W  I  L  S  Q  I  L  L  A  M  S  *  S  *  H  H  C  L  N  T  *  *  L  N  L  P  L  *  C  W  I  H  M  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32740" stop="33009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEHHKHSNKMVPRFFVLEQDITPHPKKSNLCKGHCYYKPNALVDFSHHKYPLCLNKSHQICTLLKSDLHSSLCCSNIDLKLSDFEHFPF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32500" stop="32733"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKIYYFYIINKMDTCLQLSFSPLWNKTRRAKTLIHTIKYSIFYKFVFLSKSCISIDQDHYLVMTEVCLPTSKKLVEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="35138" PGL_stop="34536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35138" e_stop="34536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="35138" e_stop="34536" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35138" stop="34536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCATAGTCTTTCCAACTTGTTTACAAGTGCTGGTTTTTAGTTGGTGGTCACATAAACAACTTCATTTTTGTTGTTTTTTTGACTTCCAAGAACGTGGGTGCCTTGCCTTATATCCTTCTAACTTCTGAAAAAACCTACTGATAATGACAAAAATAAGCATGATCTTTTTAGTCTAGTGAGAATTGACATTTTAGTTTTCTATATAGGATTAGTGAGGGGTCTAGTAAAAACAAGTAGCCAAATTGTGTTACTTCACTTCCCTTAAGTTCTATAAGTACTCTGTTTTAGTTTAAAAAAGCTATACTAGCTGGACACAAATTATGGAATTCACTAGATTTTGCTTCTTGGTTTTTTCTGTTTTCTTGATTTCCTATGTTTTTTCAGTTCATGGTAGGTTTTATGATTACCCCAAAGTGTCGCGTTTTCGTGCATTGTCACAAATATCAATGCCACCTTTCCCTGCCCCTGCCCCTGGCCCTGGCCCTGCCCCTGCTCCTGAACCTAAGGGTGATCCAAAAACTGAGAATGTGAAGAATTCATCAAATGATTATGCAGCAGGCATTTTCAATGTGTTGTCTTATGGGGCTGTTGGTGATGGTGT</gDNA_template>
            <first_frame> L  H  S  L  S  N  L  F  T  S  A  G  F  *  L  V  V  T  *  T  T  S  F  L  L  F  F  *  L  P  R  T  W  V  P  C  L  I  S  F  *  L  L  K  K  P  T  D  N  D  K  N  K  H  D  L  F  S  L  V  R  I  D  I  L  V  F  Y  I  G  L  V  R  G  L  V  K  T  S  S  Q  I  V  L  L  H  F  P  *  V  L  *  V  L  C  F  S  L  K  K  L  Y  *  L  D  T  N  Y  G  I  H  *  I  L  L  L  G  F  F  C  F  L  D  F  L  C  F  F  S  S  W  *  V  L  *  L  P  Q  S  V  A  F  S  C  I  V  T  N  I  N  A  T  F  P  C  P  C  P  W  P  W  P  C  P  C  S  *  T  *  G  *  S  K  N  *  E  C  E  E  F  I  K  *  L  C  S  R  H  F  Q  C  V  V  L  W  G  C  W  *  W  C </first_frame>
            <second_frame>  C  I  V  F  P  T  C  L  Q  V  L  V  F  S  W  W  S  H  K  Q  L  H  F  C  C  F  F  D  F  Q  E  R  G  C  L  A  L  Y  P  S  N  F  *  K  N  L  L  I  M  T  K  I  S  M  I  F  L  V  *  *  E  L  T  F  *  F  S  I  *  D  *  *  G  V  *  *  K  Q  V  A  K  L  C  Y  F  T  S  L  K  F  Y  K  Y  S  V  L  V  *  K  S  Y  T  S  W  T  Q  I  M  E  F  T  R  F  C  F  L  V  F  S  V  F  L  I  S  Y  V  F  S  V  H  G  R  F  Y  D  Y  P  K  V  S  R  F  R  A  L  S  Q  I  S  M  P  P  F  P  A  P  A  P  G  P  G  P  A  P  A  P  E  P  K  G  D  P  K  T  E  N  V  K  N  S  S  N  D  Y  A  A  G  I  F  N  V  L  S  Y  G  A  V  G  D  G   </second_frame>
            <third_frame>   A  *  S  F  Q  L  V  Y  K  C  W  F  L  V  G  G  H  I  N  N  F  I  F  V  V  F  L  T  S  K  N  V  G  A  L  P  Y  I  L  L  T  S  E  K  T  Y  *  *  *  Q  K  *  A  *  S  F  *  S  S  E  N  *  H  F  S  F  L  Y  R  I  S  E  G  S  S  K  N  K  *  P  N  C  V  T  S  L  P  L  S  S  I  S  T  L  F  *  F  K  K  A  I  L  A  G  H  K  L  W  N  S  L  D  F  A  S  W  F  F  L  F  S  *  F  P  M  F  F  Q  F  M  V  G  F  M  I  T  P  K  C  R  V  F  V  H  C  H  K  Y  Q  C  H  L  S  L  P  L  P  L  A  L  A  L  P  L  L  L  N  L  R  V  I  Q  K  L  R  M  *  R  I  H  Q  M  I  M  Q  Q  A  F  S  M  C  C  L  M  G  L  L  V  M  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34843" stop="34538"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTSWTQIMEFTRFCFLVFSVFLISYVFSVHGRFYDYPKVSRFRALSQISMPPFPAPAPGPGPAPAPEPKGDPKTENVKNSSNDYAAGIFNVLSYGAVGDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="40550" PGL_stop="38479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40550" e_stop="40436"/>
            <exon e_start="40361" e_stop="40297"/>
            <exon e_start="39557" e_stop="39473"/>
            <exon e_start="38713" e_stop="38651"/>
            <exon e_start="38509" e_stop="38479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.542" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.940" e_score="0.929"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.873"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40550" e_stop="40436" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.542">
            <gDNA_intron_boundary i_start="40435" i_stop="40362" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40361" e_stop="40297" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.928">
            <gDNA_intron_boundary i_start="40296" i_stop="39558" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="39557" e_stop="39473" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.940">
            <gDNA_intron_boundary i_start="39472" i_stop="38714" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="0.873">
            <gDNA_exon_boundary e_start="38713" e_stop="38651" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38650" i_stop="38510" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="38509" e_stop="38479" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40550" stop="40436"/>
              <exon start="40361" stop="40297"/>
              <exon start="39557" stop="39473"/>
              <exon start="38713" stop="38651"/>
              <exon start="38509" stop="38479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTACTGCGATTACTGCGATAAGGAATTCCAGGATACCGCAGCTGCTCGGAGGCGTCATCTTCAAGGTGTTCAACATCAAAGAGCCAAGGCTCTTTGGTACGACTCCTTGCGCA : ATCCCCAATTATTTAACGATCCGGACTCGTTCGGTAAAGGAGTCTGCAATCACTTTGTTCGAACG : GGGTATTGCCAGTATGGGGACTCCTGCAAATATTATCATCCCAAGCAAAACCCTCAAACTGTGAACCAAACGGGACTCCCTCCAG : GGGAAAATAGTAGAGAGGGTTTCCATTCAAGTAGTCAACCTTTTGGTTCAGCCTCTTTTCCAG : GTGATGTGTTCAGAGAAAAGGCCGGAGCATC</gDNA_template>
            <first_frame> Y  Y  C  D  Y  C  D  K  E  F  Q  D  T  A  A  A  R  R  R  H  L  Q  G  V  Q  H  Q  R  A  K  A  L  W  Y  D  S  L  R   : N  P  Q  L  F  N  D  P  D  S  F  G  K  G  V  C  N  H  F  V  R  T  :  G  Y  C  Q  Y  G  D  S  C  K  Y  Y  H  P  K  Q  N  P  Q  T  V  N  Q  T  G  L  P  P   : G  E  N  S  R  E  G  F  H  S  S  S  Q  P  F  G  S  A  S  F  P   : G  D  V  F  R  E  K  A  G  A   </first_frame>
            <second_frame>  T  T  A  I  T  A  I  R  N  S  R  I  P  Q  L  L  G  G  V  I  F  K  V  F  N  I  K  E  P  R  L  F  G  T  T  P  C  A  :  I  P  N  Y  L  T  I  R  T  R  S  V  K  E  S  A  I  T  L  F  E  R :   G  I  A  S  M  G  T  P  A  N  I  I  I  P  S  K  T  L  K  L  *  T  K  R  D  S  L  Q  :  G  K  I  V  E  R  V  S  I  Q  V  V  N  L  L  V  Q  P  L  F  Q  :  V  M  C  S  E  K  R  P  E  H  </second_frame>
            <third_frame>   L  L  R  L  L  R  *  G  I  P  G  Y  R  S  C  S  E  A  S  S  S  R  C  S  T  S  K  S  Q  G  S  L  V  R  L  L  A  Q :   S  P  I  I  *  R  S  G  L  V  R  *  R  S  L  Q  S  L  C  S  N   : G  V  L  P  V  W  G  L  L  Q  I  L  S  S  Q  A  K  P  S  N  C  E  P  N  G  T  P  S  R :   G  K  *  *  R  G  F  P  F  K  *  S  T  F  W  F  S  L  F  S  R :   *  C  V  Q  R  K  G  R  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40550" stop="40436"/>
                    <exon start="40361" stop="40297"/>
                    <exon start="39557" stop="39473"/>
                    <exon start="38713" stop="38651"/>
                    <exon start="38509" stop="38481"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYCDYCDKEFQDTAAARRRHLQGVQHQRAKALWYDSLRNPQLFNDPDSFGKGVCNHFVRTGYCQYGDSCKYYHPKQNPQTVNQTGLPPGENSREGFHSSSQPFGSASFPGDVFREKAGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47733" PGL_stop="41332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47733" e_stop="47579"/>
            <exon e_start="46482" e_stop="46321"/>
            <exon e_start="46196" e_stop="46104"/>
            <exon e_start="45919" e_stop="45860"/>
            <exon e_start="45735" e_stop="45463"/>
            <exon e_start="45105" e_stop="45031"/>
            <exon e_start="44078" e_stop="44022"/>
            <exon e_start="43892" e_stop="43752"/>
            <exon e_start="43656" e_stop="43606"/>
            <exon e_start="42510" e_stop="42415"/>
            <exon e_start="42323" e_stop="42240"/>
            <exon e_start="41924" e_stop="41822"/>
            <exon e_start="41735" e_stop="41332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47733" e_stop="47579" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46482" e_stop="46321" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46196" e_stop="46104" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45860" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45735" e_stop="45463" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45105" e_stop="45031" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45030" i_stop="44079" i_length="952"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44078" e_stop="44022" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.855" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44021" i_stop="43893" i_length="129"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43892" e_stop="43752" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43751" i_stop="43657" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43656" e_stop="43606" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="43605" i_stop="42511" i_length="1095"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42510" e_stop="42415" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.915" acc_prob="0.954">
            <gDNA_intron_boundary i_start="42414" i_stop="42324" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42323" e_stop="42240" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42239" i_stop="41925" i_length="315"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41924" e_stop="41822" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.895">
            <gDNA_intron_boundary i_start="41821" i_stop="41736" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41735" e_stop="41332" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47733" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45463"/>
              <exon start="45105" stop="45031"/>
              <exon start="44078" stop="44022"/>
              <exon start="43892" stop="43752"/>
              <exon start="43656" stop="43606"/>
              <exon start="42510" stop="42415"/>
              <exon start="42323" stop="42240"/>
              <exon start="41924" stop="41822"/>
              <exon start="41735" stop="41332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCTCTCTCTCAATCAATATCAGGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG : GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG : GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG : GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG : ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG : GTGAATCCACATACCCACCAGGTTAAATTATGCGATTTTGGGAGTGCCAAAGTTCTG : GTTAAAGGAGAACCAAATATTTCTTACATCTGTTCTAGGTATTATCGAGCACCTGAGCTCATATTTGGTGCAACAGAGTACACTACTGCTATAGATGTTTGGTCTGCTGGCTGTGTCCTAGCTGAGCTACTTCTTGGTCAG : CCATTATTTCCAGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATTAAG : GTTTTAGGCACTCCTACAAGGGAAGAAATTAAATGTATGAATCCCAACTATAATGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAG : ATATTTCATAAGCGCATGCCTCCAGAAGCAGTTGATCTGGTCTCAAGACTGCTTCAGTACTCTCCTAACTTGCGCTGTGCTGCT : TTGGATGCCTTGGTTCACCCATTTTTTGACGAGCTTCGTGATCCCAATACACGCTTGCCTAATGGACGCTTTCTTCCTCCCTTGTTTAACTTCAAGGCTCATG : AGTTGAAGAATGTGCATGCAGAGATATTACTGAAGTTGGTTCCAGAGCACGCCAGAAAACAGTGCCCTTCCCTTGGGTTATGAGTTCCTGCCTTGTGATAGAAATAATTTAAGTGTACCCTTTGAAGCTGTGTTTCTTCTCTGTATCAATTTGTTCCTTCTTTCCCTTATCTTACCATGTCTCTGTTGTCCCTTTGTATTATTATTATTATATCTTGTTTTGTAAAAGCAGATGTAGGGAATTGATCTTTAACAAATACCCGATGTTCAACCTGTGTTCCTTTTTACCCTGTTCCGATATATCCTATGCTTGTAACATTATGTGGTTGAGAATTAACAATTTGAGTGAACGTTATTATTATGGGATTGCAAATTAATGATAGGGTGACTGTTGATATGGCTCCT</gDNA_template>
            <first_frame> S  F  S  L  S  I  N  I  R  F  F  F  L  S  L  Y  L  F  F  S  L  M  V  M  V  S  S  P  P  Q  F  L  S  E  D  R  R  *  S  V  F  F  S  V  S  S  T  F  *  F  F  R :   *  M  T  F  C  G  D  N  *  *  A  D  F  S  W  K  W  L  P  W  A  *  H  L  H  R  V  *  E  N  P  V  A  I  M  L  G  *  I  G  C  L  R  R  *  M  T  *  E  S  G  M  I  R :   K  W  K  Q  Q  L  L  T  V  M  G  L  R  Q  A  T  *  *  *  Q  L  L  V  V  E  M  A  S  Q  S  R :   L  L  V  T  W  L  N  V  L  L  D  K  D  P  L  G  W  C  F  R :   Q  N  A  *  R  L  V  K  L  L  L  L  K  R  F  F  K  I  K  D  I  R  T  E  N  C  R  Q  C  A  F  L  T  T  L  M  L  C  L  S  N  T  A  S  F  P  Q  L  T  R  M  N  C  I  L  T  W  F  L  S  M  Y  L  K  P  F  T  V  L  S  N  T  T  I  S  *  I  K  G  C  R  *  Y  L  *  S  F  I  H  I  R :   F  S  G  H  C  L  T  Y  T  A  L  L  E  C  A  T  G  T  L  N  L  R  I  F  W :   *  I  H  I  P  T  R  L  N  Y  A  I  L  G  V  P  K  F  W :   L  K  E  N  Q  I  F  L  T  S  V  L  G  I  I  E  H  L  S  S  Y  L  V  Q  Q  S  T  L  L  L  *  M  F  G  L  L  A  V  S  *  L  S  Y  F  L  V  S :   H  Y  F  Q  V  K  V  E  L  I  S  L  L  R  S  L  R :   F  *  A  L  L  Q  G  K  K  L  N  V  *  I  P  T  I  M  S  S  N  F  L  K  L  K  L  I  H  G  T  R :   Y  F  I  S  A  C  L  Q  K  Q  L  I  W  S  Q  D  C  F  S  T  L  L  T  C  A  V  L  L :   W  M  P  W  F  T  H  F  L  T  S  F  V  I  P  I  H  A  C  L  M  D  A  F  F  L  P  C  L  T  S  R  L  M  :  S  *  R  M  C  M  Q  R  Y  Y  *  S  W  F  Q  S  T  P  E  N  S  A  L  P  L  G  Y  E  F  L  P  C  D  R  N  N  L  S  V  P  F  E  A  V  F  L  L  C  I  N  L  F  L  L  S  L  I  L  P  C  L  C  C  P  F  V  L  L  L  L  Y  L  V  L  *  K  Q  M  *  G  I  D  L  *  Q  I  P  D  V  Q  P  V  F  L  F  T  L  F  R  Y  I  L  C  L  *  H  Y  V  V  E  N  *  Q  F  E  *  T  L  L  L  W  D  C  K  L  M  I  G  *  L  L  I  W  L   </first_frame>
            <second_frame>  L  S  L  S  Q  S  I  S  G  S  S  F  S  L  C  I  S  F  S  L  S  W  *  W  Y  H  L  R  H  N  F  Y  R  R  T  A  G  D  R  C  F  S  P  S  P  Q  H  F  D  S  F   : G  E  *  P  F  V  V  I  T  S  K  Q  T  F  L  G  N  G  F  R  G  L  S  T  Y  I  G  F  E  R  I  Q  W  P  *  C  W  G  R  *  V  A  *  G  D  E  *  H  E  N  Q  G  *  *   : G  N  G  S  S  N  C  *  R  *  W  D  *  D  R  P  H  N  S  D  N  Y  W  W  *  K  W  P  A  K  A   : D  Y  *  L  H  G  *  T  C  C  W  T  R  I  L  W  G  G  V  S   : G  K  M  L  R  D  W  *  N  C  C  Y  *  K  G  S  S  R  *  K  I  *  E  P  R  I  A  D  N  A  P  S  *  P  P  *  C  C  V  S  Q  T  L  L  L  F  H  N  *  Q  G  *  T  V  S  *  L  G  S  *  V  C  T  *  N  R  S  P  C  Y  Q  T  L  Q  *  A  E  S  K  D  A  V  D  T  C  E  A  L  Y  I  S   : D  F  Q  G  I  V  L  H  T  P  H  Y  W  S  V  P  Q  G  H  *  T  S  E  S  F   : G  E  S  T  Y  P  P  G  *  I  M  R  F  W  E  C  Q  S  S   : G  *  R  R  T  K  Y  F  L  H  L  F  *  V  L  S  S  T  *  A  H  I  W  C  N  R  V  H  Y  C  Y  R  C  L  V  C  W  L  C  P  S  *  A  T  S  W  S   : A  I  I  S  R  *  K  W  S  *  S  A  C  *  D  H  *   : G  F  R  H  S  Y  K  G  R  N  *  M  Y  E  S  Q  L  *  *  V  Q  I  S  S  N  *  S  S  S  M  A  Q   : D  I  S  *  A  H  A  S  R  S  S  *  S  G  L  K  T  A  S  V  L  S  *  L  A  L  C  C   : F  G  C  L  G  S  P  I  F  *  R  A  S  *  S  Q  Y  T  L  A  *  W  T  L  S  S  S  L  V  *  L  Q  G  S  * :   V  E  E  C  A  C  R  D  I  T  E  V  G  S  R  A  R  Q  K  T  V  P  F  P  W  V  M  S  S  C  L  V  I  E  I  I  *  V  Y  P  L  K  L  C  F  F  S  V  S  I  C  S  F  F  P  L  S  Y  H  V  S  V  V  P  L  Y  Y  Y  Y  Y  I  L  F  C  K  S  R  C  R  E  L  I  F  N  K  Y  P  M  F  N  L  C  S  F  L  P  C  S  D  I  S  Y  A  C  N  I  M  W  L  R  I  N  N  L  S  E  R  Y  Y  Y  G  I  A  N  *  *  *  G  D  C  *  Y  G  S  </second_frame>
            <third_frame>   F  L  S  L  N  Q  Y  Q  V  L  L  S  L  F  V  S  L  F  L  S  H  G  D  G  I  I  S  A  T  I  F  I  G  G  P  P  V  I  G  V  F  L  R  L  L  N  I  L  I  L  S  :  V  N  D  L  L  W  *  *  L  V  S  R  L  F  L  E  M  A  S  V  G  L  A  P  T  S  G  L  R  E  S  S  G  H  N  A  G  V  D  R  L  P  E  E  M  N  D  M  R  I  R  D  D  K  :  E  M  E  A  A  I  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  R  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  V  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  N  V  V  S  L  K  H  C  F  F  S  T  T  D  K  D  E  L  Y  L  N  L  V  L  E  Y  V  P  E  T  V  H  R  V  I  K  H  Y  N  K  L  N  Q  R  M  P  L  I  L  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  S  Y  I  H  R  T  I  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  K  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  A  I  D  V  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  K  C  M  N  P  N  Y  N  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  S  R  L  L  Q  Y  S  P  N  L  R  C  A  A  :  L  D  A  L  V  H  P  F  F  D  E  L  R  D  P  N  T  R  L  P  N  G  R  F  L  P  P  L  F  N  F  K  A  H   : E  L  K  N  V  H  A  E  I  L  L  K  L  V  P  E  H  A  R  K  Q  C  P  S  L  G  L  *  V  P  A  L  *  *  K  *  F  K  C  T  L  *  S  C  V  S  S  L  Y  Q  F  V  P  S  F  P  Y  L  T  M  S  L  L  S  L  C  I  I  I  I  I  S  C  F  V  K  A  D  V  G  N  *  S  L  T  N  T  R  C  S  T  C  V  P  F  Y  P  V  P  I  Y  P  M  L  V  T  L  C  G  *  E  L  T  I  *  V  N  V  I  I  M  G  L  Q  I  N  D  R  V  T  V  D  M  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46458" stop="46321"/>
                    <exon start="46196" stop="46104"/>
                    <exon start="45919" stop="45860"/>
                    <exon start="45735" stop="45463"/>
                    <exon start="45105" stop="45031"/>
                    <exon start="44078" stop="44022"/>
                    <exon start="43892" stop="43752"/>
                    <exon start="43656" stop="43606"/>
                    <exon start="42510" stop="42415"/>
                    <exon start="42323" stop="42240"/>
                    <exon start="41924" stop="41822"/>
                    <exon start="41735" stop="41653"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRLFLEMASVGLAPTSGLRESSGHNAGVDRLPEEMNDMRIRDDKEMEAAIVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTYQIFRALSYIHRTIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCAALDALVHPFFDELRDPNTRLPNGRFLPPLFNFKAHELKNVHAEILLKLVPEHARKQCPSLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41623" stop="41360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPLKLCFFSVSICSFFPLSYHVSVVPLYYYYYILFCKSRCRELIFNKYPMFNLCSFLPCSDISYACNIMWLRINNLSERYYYGIAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47689" e_stop="47407"/>
            <exon e_start="46482" e_stop="46321"/>
            <exon e_start="46196" e_stop="46104"/>
            <exon e_start="45919" e_stop="45860"/>
            <exon e_start="45735" e_stop="45569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="47689" e_stop="47407" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47406" i_stop="46483" i_length="924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46482" e_stop="46321" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46196" e_stop="46104" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45860" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45859" i_stop="45736" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="0.946">
            <gDNA_exon_boundary e_start="45735" e_stop="45569" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47689" stop="47407"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45860"/>
              <exon start="45735" stop="45569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCGGTATCCATATTTTTCTTCATTTATATATATATATATATATATGTATATCCTTGTTGTTCTTGCAAAGTTTAGCTCTGATATTCTGCGTTGTAGATCCGTGTTCTACTTTTTCGTTTAAATTCATATGGATCGGGTTACTTATGGATCCGTTTAGATCTTCTTGTAGATTTTG : GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG : GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAGGATCCTTTGGGGTGGTGTTTCAG : GCAAAATGCTTAGAGACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGATAAAAGATATAAGAACCGAGAATTGCAGACAATGCGCCTTCTTGACCACCCTAATGTTGTGTCTCTCAAACACTGCTTCTTTTCCACAACTGACAAGGATGAACTGTATCTTAA</gDNA_template>
            <first_frame> V  S  L  F  L  S  H  G  D  G  I  I  S  A  T  I  F  I  G  G  P  P  V  I  G  V  F  L  R  L  L  N  I  L  I  L  S  V  S  I  F  F  F  I  Y  I  Y  I  Y  I  Y  V  Y  P  C  C  S  C  K  V  *  L  *  Y  S  A  L  *  I  R  V  L  L  F  R  L  N  S  Y  G  S  G  Y  L  W  I  R  L  D  L  L  V  D  F   : G  E  *  P  F  V  V  I  T  S  K  Q  T  F  L  G  N  G  F  R  G  L  S  T  Y  I  G  F  E  R  I  Q  W  P  *  C  W  G  R  *  V  A  *  G  D  E  *  H  E  N  Q  G  *  *   : G  N  G  S  S  N  C  *  R  *  W  D  *  D  R  P  H  N  S  D  N  Y  W  W  *  K  W  P  A  K  A   : D  Y  *  L  H  G  *  T  C  C  W  T  R  I  L  W  G  G  V  S   : G  K  M  L  R  D  W  *  N  C  C  Y  *  K  G  S  S  R  *  K  I  *  E  P  R  I  A  D  N  A  P  S  *  P  P  *  C  C  V  S  Q  T  L  L  L  F  H  N  *  Q  G  *  T  V  S  * </first_frame>
            <second_frame>  Y  L  F  F  S  L  M  V  M  V  S  S  P  P  Q  F  L  S  E  D  R  R  *  S  V  F  F  S  V  S  S  T  F  *  F  F  R  Y  P  Y  F  S  S  F  I  Y  I  Y  I  Y  M  Y  I  L  V  V  L  A  K  F  S  S  D  I  L  R  C  R  S  V  F  Y  F  F  V  *  I  H  M  D  R  V  T  Y  G  S  V  *  I  F  L  *  I  L  :  V  N  D  L  L  W  *  *  L  V  S  R  L  F  L  E  M  A  S  V  G  L  A  P  T  S  G  L  R  E  S  S  G  H  N  A  G  V  D  R  L  P  E  E  M  N  D  M  R  I  R  D  D  K  :  E  M  E  A  A  I  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  R  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q  G  S  F  G  V  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  T  M  R  L  L  D  H  P  N  V  V  S  L  K  H  C  F  F  S  T  T  D  K  D  E  L  Y  L   </second_frame>
            <third_frame>   I  S  F  S  L  S  W  *  W  Y  H  L  R  H  N  F  Y  R  R  T  A  G  D  R  C  F  S  P  S  P  Q  H  F  D  S  F  G  I  H  I  F  L  H  L  Y  I  Y  I  Y  I  C  I  S  L  L  F  L  Q  S  L  A  L  I  F  C  V  V  D  P  C  S  T  F  S  F  K  F  I  W  I  G  L  L  M  D  P  F  R  S  S  C  R  F  W :   *  M  T  F  C  G  D  N  *  *  A  D  F  S  W  K  W  L  P  W  A  *  H  L  H  R  V  *  E  N  P  V  A  I  M  L  G  *  I  G  C  L  R  R  *  M  T  *  E  S  G  M  I  R :   K  W  K  Q  Q  L  L  T  V  M  G  L  R  Q  A  T  *  *  *  Q  L  L  V  V  E  M  A  S  Q  S  R :   L  L  V  T  W  L  N  V  L  L  D  K  D  P  L  G  W  C  F  R :   Q  N  A  *  R  L  V  K  L  L  L  L  K  R  F  F  K  I  K  D  I  R  T  E  N  C  R  Q  C  A  F  L  T  T  L  M  L  C  L  S  N  T  A  S  F  P  Q  L  T  R  M  N  C  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46458" stop="46321"/>
                    <exon start="46196" stop="46104"/>
                    <exon start="45919" stop="45860"/>
                    <exon start="45735" stop="45571"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRLFLEMASVGLAPTSGLRESSGHNAGVDRLPEEMNDMRIRDDKEMEAAIVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47663" stop="47407"/>
                    <exon start="46482" stop="46479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYHLRHNFYRRTAGDRCFSPSPQHFDSFGIHIFLHLYIYIYICISLLFLQSLALIFCVVDPCSTFSFKFIWIGLLMDPFRSSCRFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47708" e_stop="47579"/>
            <exon e_start="46482" e_stop="46321"/>
            <exon e_start="46196" e_stop="46104"/>
            <exon e_start="45919" e_stop="45883"/>
            <exon e_start="45585" e_stop="45463"/>
            <exon e_start="45105" e_stop="45031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47708" e_stop="47579" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="47578" i_stop="46483" i_length="1096"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46482" e_stop="46321" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46320" i_stop="46197" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46196" e_stop="46104" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46103" i_stop="45920" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="45883" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45882" i_stop="45586" i_length="297"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="45585" e_stop="45463" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45462" i_stop="45106" i_length="357"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45105" e_stop="45031" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47708" stop="47579"/>
              <exon start="46482" stop="46321"/>
              <exon start="46196" stop="46104"/>
              <exon start="45919" stop="45883"/>
              <exon start="45585" stop="45463"/>
              <exon start="45105" stop="45031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTCTTCTTTCTCTCTTTGTATCTCTTTTTCTCTCTCATGGTGATGGTATCATCTCCGCCACAATTTTTATCGGAGGACCGCCGGTGATCGGTGTTTTTCTCCGTCTCCTCAACATTTTGATTCTTTCG : GTGAATGACCTTTTGTGGTGATAACTAGTAAGCAGACTTTTCTTGGAAATGGCTTCCGTGGGCTTAGCACCTACATCGGGTTTGAGAGAATCCAGTGGCCATAATGCTGGGGTAGATAGGTTGCCTGAGGAGATGAATGACATGAGAATCAGGGATGATAAG : GAAATGGAAGCAGCAATTGTTGACGGTAATGGGACTGAGACAGGCCACATAATAGTGACAACTATTGGTGGTAGAAATGGCCAGCCAAAGCAG : ACTATTAGTTACATGGCTGAACGTGTTGTTGGACAAG : GATGAACTGTATCTTAACTTGGTTCTTGAGTATGTACCTGAAACCGTTCACCGTGTTATCAAACACTACAATAAGCTGAATCAAAGGATGCCGTTGATACTTGTGAAGCTTTATACATATCAG : ATTTTCAGGGCATTGTCTTACATACACCGCACTATTGGAGTGTGCCACAGGGACATTAAACCTCAGAATCTTTTG</gDNA_template>
            <first_frame> G  S  S  F  S  L  C  I  S  F  S  L  S  W  *  W  Y  H  L  R  H  N  F  Y  R  R  T  A  G  D  R  C  F  S  P  S  P  Q  H  F  D  S  F   : G  E  *  P  F  V  V  I  T  S  K  Q  T  F  L  G  N  G  F  R  G  L  S  T  Y  I  G  F  E  R  I  Q  W  P  *  C  W  G  R  *  V  A  *  G  D  E  *  H  E  N  Q  G  *  *   : G  N  G  S  S  N  C  *  R  *  W  D  *  D  R  P  H  N  S  D  N  Y  W  W  *  K  W  P  A  K  A   : D  Y  *  L  H  G  *  T  C  C  W  T  R :   M  N  C  I  L  T  W  F  L  S  M  Y  L  K  P  F  T  V  L  S  N  T  T  I  S  *  I  K  G  C  R  *  Y  L  *  S  F  I  H  I  R :   F  S  G  H  C  L  T  Y  T  A  L  L  E  C  A  T  G  T  L  N  L  R  I  F   </first_frame>
            <second_frame>  V  L  L  S  L  F  V  S  L  F  L  S  H  G  D  G  I  I  S  A  T  I  F  I  G  G  P  P  V  I  G  V  F  L  R  L  L  N  I  L  I  L  S  :  V  N  D  L  L  W  *  *  L  V  S  R  L  F  L  E  M  A  S  V  G  L  A  P  T  S  G  L  R  E  S  S  G  H  N  A  G  V  D  R  L  P  E  E  M  N  D  M  R  I  R  D  D  K  :  E  M  E  A  A  I  V  D  G  N  G  T  E  T  G  H  I  I  V  T  T  I  G  G  R  N  G  Q  P  K  Q  :  T  I  S  Y  M  A  E  R  V  V  G  Q   : G  *  T  V  S  *  L  G  S  *  V  C  T  *  N  R  S  P  C  Y  Q  T  L  Q  *  A  E  S  K  D  A  V  D  T  C  E  A  L  Y  I  S   : D  F  Q  G  I  V  L  H  T  P  H  Y  W  S  V  P  Q  G  H  *  T  S  E  S  F  </second_frame>
            <third_frame>   F  F  F  L  S  L  Y  L  F  F  S  L  M  V  M  V  S  S  P  P  Q  F  L  S  E  D  R  R  *  S  V  F  F  S  V  S  S  T  F  *  F  F  R :   *  M  T  F  C  G  D  N  *  *  A  D  F  S  W  K  W  L  P  W  A  *  H  L  H  R  V  *  E  N  P  V  A  I  M  L  G  *  I  G  C  L  R  R  *  M  T  *  E  S  G  M  I  R :   K  W  K  Q  Q  L  L  T  V  M  G  L  R  Q  A  T  *  *  *  Q  L  L  V  V  E  M  A  S  Q  S  R :   L  L  V  T  W  L  N  V  L  L  D  K  :  D  E  L  Y  L  N  L  V  L  E  Y  V  P  E  T  V  H  R  V  I  K  H  Y  N  K  L  N  Q  R  M  P  L  I  L  V  K  L  Y  T  Y  Q  :  I  F  R  A  L  S  Y  I  H  R  T  I  G  V  C  H  R  D  I  K  P  Q  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46458" stop="46321"/>
                    <exon start="46196" stop="46104"/>
                    <exon start="45919" stop="45883"/>
                    <exon start="45585" stop="45581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRLFLEMASVGLAPTSGLRESSGHNAGVDRLPEEMNDMRIRDDKEMEAAIVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46138" stop="46104"/>
                    <exon start="45919" stop="45883"/>
                    <exon start="45585" stop="45463"/>
                    <exon start="45105" stop="45031"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLVVEMASQSRLLVTWLNVLLDKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTYQIFRALSYIHRTIGVCHRDIKPQNLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="58491" PGL_stop="54132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58491" e_stop="58238"/>
            <exon e_start="57406" e_stop="57248"/>
            <exon e_start="55217" e_stop="55056"/>
            <exon e_start="54493" e_stop="54132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58491" e_stop="58238" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58237" i_stop="57407" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57406" e_stop="57248" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="57247" i_stop="55218" i_length="2030"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55217" e_stop="55056" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="55055" i_stop="54494" i_length="562"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="54493" e_stop="54132" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58491" stop="58238"/>
              <exon start="57406" stop="57248"/>
              <exon start="55217" stop="55056"/>
              <exon start="54493" stop="54132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGAACAATGTTTAATTCCCTCTTCACATGGATATCATCATCGTCCTTGGCATTTATATATGGGCATGATGAAAGCAATAACGAGGAGTATTTGTCTATCAATGGAAGAGAATATCCTCGCAAAATTGTGTTATCTGATGGCCGGTCAACTGAGATTAAGCAGACTCTAGCTGGCTGTCTTGCTCGAGCATTGCCGGGATTGGTTGCTGACCTTAGGCTGCCTGTACCGATATCAACTTTAGAGCAAGGAATG : GTTCTCCTCTTAAATACAATGTCTTTTGTGGATCCACTCCCTGCATTCCGAATGAAGCAATGGCAACTTATTGTACTTCTGTTTCTTGATGCTCTTTCTGTATGTAGGATACCCACACTGACTCCATATATGACGGGGCGAAGGACTTCGTTTCCAAAG : GTGCTTGATGGTGCTCAGATAAGCGCAGCGGAATATGAGATCATGAAAGATCTGATCATTCCACTAGGTCGAGTGCCTCAGTTCTCAATGCAAAGTGGAGGCTAGTTTGACATGAAATAGCTGTTGTGGACCCTCTCCTATAAACCTTCATGGTAGAAAGAG : GAACTGCACAGAGCTGTTGTTTAATACAATTTACAGCAAGTCCTCTAATCCTGATAGGAGTTGATTTTGCCACCTTTCCACCAGCAACATATCTTCGTCCTGTCATTATATCCTCTTGTTGAAACATTGTTTAGTTTGGCAAGGTTTGATATCATGTTTACTGCTGTGATCCCTCTATCTTGGAGACTAGTGATATGGAAACTGTGATTCCACTTCTTTAGTGTGTGAAGATTTGGTCAATCATTTTTACCTACTTGTGCAGTCATGTAAAAATCCTCAGATGTGTTCTGTGAGGTGTGAATATAACTTTAAAATAGAACTATTATTTTTCTGTGTTTTAAATCCAAGAACTGTTTGTCTCC</gDNA_template>
            <first_frame> S  E  Q  C  L  I  P  S  S  H  G  Y  H  H  R  P  W  H  L  Y  M  G  M  M  K  A  I  T  R  S  I  C  L  S  M  E  E  N  I  L  A  K  L  C  Y  L  M  A  G  Q  L  R  L  S  R  L  *  L  A  V  L  L  E  H  C  R  D  W  L  L  T  L  G  C  L  Y  R  Y  Q  L  *  S  K  E  W :   F  S  S  *  I  Q  C  L  L  W  I  H  S  L  H  S  E  *  S  N  G  N  L  L  Y  F  C  F  L  M  L  F  L  Y  V  G  Y  P  H  *  L  H  I  *  R  G  E  G  L  R  F  Q  R :   C  L  M  V  L  R  *  A  Q  R  N  M  R  S  *  K  I  *  S  F  H  *  V  E  C  L  S  S  Q  C  K  V  E  A  S  L  T  *  N  S  C  C  G  P  S  P  I  N  L  H  G  R  K  R :   N  C  T  E  L  L  F  N  T  I  Y  S  K  S  S  N  P  D  R  S  *  F  C  H  L  S  T  S  N  I  S  S  S  C  H  Y  I  L  L  L  K  H  C  L  V  W  Q  G  L  I  S  C  L  L  L  *  S  L  Y  L  G  D  *  *  Y  G  N  C  D  S  T  S  L  V  C  E  D  L  V  N  H  F  Y  L  L  V  Q  S  C  K  N  P  Q  M  C  S  V  R  C  E  Y  N  F  K  I  E  L  L  F  F  C  V  L  N  P  R  T  V  C  L  </first_frame>
            <second_frame>  R  N  N  V  *  F  P  L  H  M  D  I  I  I  V  L  G  I  Y  I  W  A  *  *  K  Q  *  R  G  V  F  V  Y  Q  W  K  R  I  S  S  Q  N  C  V  I  *  W  P  V  N  *  D  *  A  D  S  S  W  L  S  C  S  S  I  A  G  I  G  C  *  P  *  A  A  C  T  D  I  N  F  R  A  R  N   : G  S  P  L  K  Y  N  V  F  C  G  S  T  P  C  I  P  N  E  A  M  A  T  Y  C  T  S  V  S  *  C  S  F  C  M  *  D  T  H  T  D  S  I  Y  D  G  A  K  D  F  V  S  K   : G  A  *  W  C  S  D  K  R  S  G  I  *  D  H  E  R  S  D  H  S  T  R  S  S  A  S  V  L  N  A  K  W  R  L  V  *  H  E  I  A  V  V  D  P  L  L  *  T  F  M  V  E  R   : G  T  A  Q  S  C  C  L  I  Q  F  T  A  S  P  L  I  L  I  G  V  D  F  A  T  F  P  P  A  T  Y  L  R  P  V  I  I  S  S  C  *  N  I  V  *  F  G  K  V  *  Y  H  V  Y  C  C  D  P  S  I  L  E  T  S  D  M  E  T  V  I  P  L  L  *  C  V  K  I  W  S  I  I  F  T  Y  L  C  S  H  V  K  I  L  R  C  V  L  *  G  V  N  I  T  L  K  *  N  Y  Y  F  S  V  F  *  I  Q  E  L  F  V  S </second_frame>
            <third_frame>   G  T  M  F  N  S  L  F  T  W  I  S  S  S  S  L  A  F  I  Y  G  H  D  E  S  N  N  E  E  Y  L  S  I  N  G  R  E  Y  P  R  K  I  V  L  S  D  G  R  S  T  E  I  K  Q  T  L  A  G  C  L  A  R  A  L  P  G  L  V  A  D  L  R  L  P  V  P  I  S  T  L  E  Q  G  M  :  V  L  L  L  N  T  M  S  F  V  D  P  L  P  A  F  R  M  K  Q  W  Q  L  I  V  L  L  F  L  D  A  L  S  V  C  R  I  P  T  L  T  P  Y  M  T  G  R  R  T  S  F  P  K  :  V  L  D  G  A  Q  I  S  A  A  E  Y  E  I  M  K  D  L  I  I  P  L  G  R  V  P  Q  F  S  M  Q  S  G  G  *  F  D  M  K  *  L  L  W  T  L  S  Y  K  P  S  W  *  K  E  :  E  L  H  R  A  V  V  *  Y  N  L  Q  Q  V  L  *  S  *  *  E  L  I  L  P  P  F  H  Q  Q  H  I  F  V  L  S  L  Y  P  L  V  E  T  L  F  S  L  A  R  F  D  I  M  F  T  A  V  I  P  L  S  W  R  L  V  I  W  K  L  *  F  H  F  F  S  V  *  R  F  G  Q  S  F  L  P  T  C  A  V  M  *  K  S  S  D  V  F  C  E  V  *  I  *  L  *  N  R  T  I  I  F  L  C  F  K  S  K  N  C  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58489" stop="58238"/>
                    <exon start="57406" stop="57248"/>
                    <exon start="55217" stop="55113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGREYPRKIVLSDGRSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLIIPLGRVPQFSMQSGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59412" PGL_stop="58751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59412" e_stop="58751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59412" e_stop="58751" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59412" stop="58751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTTGATGCCTTGCAGTTGCGTTCTGGAGAAGAAACAGAAAAATCGGATAAGAACACTAGATTTTTGAAGGTGGACAAATTTAATTCTGGAGAAGTGTCTTCTGGTCCTTCCCAACATGATGTCAAGAACAAAAGTGTCCTAATTATGTCTGATGACGGAAGGAAATATGCATCACATGGTGAACATGATAAGCTCAAATCTTCTTTAAAATCTTCAAATTCCAAAAAAATGTCTCGGTCAGTCACTTGGGCTGATGAAAGTATCGATGGTGGCATTGGCAAGAAAACAGAGAGCTCATCCAAAATATCAGAATATGAGAGTCAAGCTTATGGGGGATCAGCCTCTACTGATATGGAAGAGAATGATGATTCATATCGGTTTGAATCTGCAGAAGCCTGTGCAGCAGCACTAAGCCAAGCAGCAGAGGCTGTTGCCTCAGGTTCTGATGTTCCTGATGCTGGTATGACATTTTCATTGATCCTCCTTATTAGGAGATTTGCAAGTCATACTCTCTTTGCATCTAATTGCTTTTGAGTTCTGTTGCATGTGATATTTAGTGTCCAAAGCCGGGATTGTAATATTGCCACCTTCACAAGAAGTGGATGAAGCAATACTTCAGGAGACTGATGAGATGCTTGATTTAGAAACAGCTCCTTTA</gDNA_template>
            <first_frame> A  S  *  C  L  A  V  A  F  W  R  R  N  R  K  I  G  *  E  H  *  I  F  E  G  G  Q  I  *  F  W  R  S  V  F  W  S  F  P  T  *  C  Q  E  Q  K  C  P  N  Y  V  *  *  R  K  E  I  C  I  T  W  *  T  *  *  A  Q  I  F  F  K  I  F  K  F  Q  K  N  V  S  V  S  H  L  G  *  *  K  Y  R  W  W  H  W  Q  E  N  R  E  L  I  Q  N  I  R  I  *  E  S  S  L  W  G  I  S  L  Y  *  Y  G  R  E  *  *  F  I  S  V  *  I  C  R  S  L  C  S  S  T  K  P  S  S  R  G  C  C  L  R  F  *  C  S  *  C  W  Y  D  I  F  I  D  P  P  Y  *  E  I  C  K  S  Y  S  L  C  I  *  L  L  L  S  S  V  A  C  D  I  *  C  P  K  P  G  L  *  Y  C  H  L  H  K  K  W  M  K  Q  Y  F  R  R  L  M  R  C  L  I  *  K  Q  L  L   </first_frame>
            <second_frame>  Q  V  D  A  L  Q  L  R  S  G  E  E  T  E  K  S  D  K  N  T  R  F  L  K  V  D  K  F  N  S  G  E  V  S  S  G  P  S  Q  H  D  V  K  N  K  S  V  L  I  M  S  D  D  G  R  K  Y  A  S  H  G  E  H  D  K  L  K  S  S  L  K  S  S  N  S  K  K  M  S  R  S  V  T  W  A  D  E  S  I  D  G  G  I  G  K  K  T  E  S  S  S  K  I  S  E  Y  E  S  Q  A  Y  G  G  S  A  S  T  D  M  E  E  N  D  D  S  Y  R  F  E  S  A  E  A  C  A  A  A  L  S  Q  A  A  E  A  V  A  S  G  S  D  V  P  D  A  G  M  T  F  S  L  I  L  L  I  R  R  F  A  S  H  T  L  F  A  S  N  C  F  *  V  L  L  H  V  I  F  S  V  Q  S  R  D  C  N  I  A  T  F  T  R  S  G  *  S  N  T  S  G  D  *  *  D  A  *  F  R  N  S  S  F  </second_frame>
            <third_frame>   K  L  M  P  C  S  C  V  L  E  K  K  Q  K  N  R  I  R  T  L  D  F  *  R  W  T  N  L  I  L  E  K  C  L  L  V  L  P  N  M  M  S  R  T  K  V  S  *  L  C  L  M  T  E  G  N  M  H  H  M  V  N  M  I  S  S  N  L  L  *  N  L  Q  I  P  K  K  C  L  G  Q  S  L  G  L  M  K  V  S  M  V  A  L  A  R  K  Q  R  A  H  P  K  Y  Q  N  M  R  V  K  L  M  G  D  Q  P  L  L  I  W  K  R  M  M  I  H  I  G  L  N  L  Q  K  P  V  Q  Q  H  *  A  K  Q  Q  R  L  L  P  Q  V  L  M  F  L  M  L  V  *  H  F  H  *  S  S  L  L  G  D  L  Q  V  I  L  S  L  H  L  I  A  F  E  F  C  C  M  *  Y  L  V  S  K  A  G  I  V  I  L  P  P  S  Q  E  V  D  E  A  I  L  Q  E  T  D  E  M  L  D  L  E  T  A  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59411" stop="58875"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVDALQLRSGEETEKSDKNTRFLKVDKFNSGEVSSGPSQHDVKNKSVLIMSDDGRKYASHGEHDKLKSSLKSSNSKKMSRSVTWADESIDGGIGKKTESSSKISEYESQAYGGSASTDMEENDDSYRFESAEACAAALSQAAEAVASGSDVPDAGMTFSLILLIRRFASHTLFASNCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62944" PGL_stop="59582"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62944" e_stop="62812"/>
            <exon e_start="60403" e_stop="59795"/>
            <exon e_start="59620" e_stop="59582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62944" e_stop="62812" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62811" i_stop="60404" i_length="2408"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="60403" e_stop="59795" e_length="609"/>
          </exon>
          <intron i_serial="2" don_prob="0.880" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59794" i_stop="59621" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="59620" e_stop="59582" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62944" stop="62812"/>
              <exon start="60403" stop="59795"/>
              <exon start="59620" stop="59582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAAAGCCTACAGCCGCCATTTGTAGAGCTTACAGAGACCTGATTCCTTCGTTGTTCTTGGGGGCGCTGTAGAGAGATTCAATTAAGTTGATGATTTAGGGTGGAATTACCAGTACCTTTTTTCTTTTAAG : TACTTCGGACGAGTTCTCTAATGGCAAAAGGAGAAGCCGTCGCTGTTAAAGATGCTGTCCACAAATTACAACTCTGTCTTCTTGAAGGCATCAAAGATGAAAGCCAACTCATTGCTGCTGGATCTCTGTTGTCTCGGAGTGATTATCAGGATGTAGTGACCGAACGATCAATTGCCAACATGTGTGGTTATCCTCTTTGCAGCAATTCTCTGCCTTCTGAAAGGTCTCGGAAAGGACATTACAGAATATCATTGAAGGAGCATAAAGTTTATGATCTTCATGAAACATACATGTACTGTTCAACAAATTGTGTAGTCAATAGCGGAGCATTTGCTGGTAGCTTGCAGGATGAGAGAAGCTCTACACTGAATCCAGCAAAGCTTAATCAAGTCCTGAATCTATTTAAGGGGTTGCATTTGCATTCCTTAGATGATGTGAAGGAAAATGGAGATCGAGGATCTTCTAAGTTGAAGATCCAGGAAAAAGTGGATTTAAAGGGTGGTGAAGTTTCATTAGAAGAGTGGATGGGTCCATCTAATGCAATTGAAGGCTATGTTCCACAGAGAGATCGAAGTGTGAATCCAGCACTGTTGAAAAACATTAACAAAG : GATCCAAGAATAAGCATGCCAGACTCCAAGATGAGAAAA</gDNA_template>
            <first_frame> F  Q  S  L  Q  P  P  F  V  E  L  T  E  T  *  F  L  R  C  S  W  G  R  C  R  E  I  Q  L  S  *  *  F  R  V  E  L  P  V  P  F  F  F  *   : V  L  R  T  S  S  L  M  A  K  G  E  A  V  A  V  K  D  A  V  H  K  L  Q  L  C  L  L  E  G  I  K  D  E  S  Q  L  I  A  A  G  S  L  L  S  R  S  D  Y  Q  D  V  V  T  E  R  S  I  A  N  M  C  G  Y  P  L  C  S  N  S  L  P  S  E  R  S  R  K  G  H  Y  R  I  S  L  K  E  H  K  V  Y  D  L  H  E  T  Y  M  Y  C  S  T  N  C  V  V  N  S  G  A  F  A  G  S  L  Q  D  E  R  S  S  T  L  N  P  A  K  L  N  Q  V  L  N  L  F  K  G  L  H  L  H  S  L  D  D  V  K  E  N  G  D  R  G  S  S  K  L  K  I  Q  E  K  V  D  L  K  G  G  E  V  S  L  E  E  W  M  G  P  S  N  A  I  E  G  Y  V  P  Q  R  D  R  S  V  N  P  A  L  L  K  N  I  N  K   : G  S  K  N  K  H  A  R  L  Q  D  E  K  </first_frame>
            <second_frame>  F  K  A  Y  S  R  H  L  *  S  L  Q  R  P  D  S  F  V  V  L  G  G  A  V  E  R  F  N  *  V  D  D  L  G  W  N  Y  Q  Y  L  F  S  F  K  :  Y  F  G  R  V  L  *  W  Q  K  E  K  P  S  L  L  K  M  L  S  T  N  Y  N  S  V  F  L  K  A  S  K  M  K  A  N  S  L  L  L  D  L  C  C  L  G  V  I  I  R  M  *  *  P  N  D  Q  L  P  T  C  V  V  I  L  F  A  A  I  L  C  L  L  K  G  L  G  K  D  I  T  E  Y  H  *  R  S  I  K  F  M  I  F  M  K  H  T  C  T  V  Q  Q  I  V  *  S  I  A  E  H  L  L  V  A  C  R  M  R  E  A  L  H  *  I  Q  Q  S  L  I  K  S  *  I  Y  L  R  G  C  I  C  I  P  *  M  M  *  R  K  M  E  I  E  D  L  L  S  *  R  S  R  K  K  W  I  *  R  V  V  K  F  H  *  K  S  G  W  V  H  L  M  Q  L  K  A  M  F  H  R  E  I  E  V  *  I  Q  H  C  *  K  T  L  T  K  :  D  P  R  I  S  M  P  D  S  K  M  R  K </second_frame>
            <third_frame>   S  K  P  T  A  A  I  C  R  A  Y  R  D  L  I  P  S  L  F  L  G  A  L  *  R  D  S  I  K  L  M  I  *  G  G  I  T  S  T  F  F  L  L  S :   T  S  D  E  F  S  N  G  K  R  R  S  R  R  C  *  R  C  C  P  Q  I  T  T  L  S  S  *  R  H  Q  R  *  K  P  T  H  C  C  W  I  S  V  V  S  E  *  L  S  G  C  S  D  R  T  I  N  C  Q  H  V  W  L  S  S  L  Q  Q  F  S  A  F  *  K  V  S  E  R  T  L  Q  N  I  I  E  G  A  *  S  L  *  S  S  *  N  I  H  V  L  F  N  K  L  C  S  Q  *  R  S  I  C  W  *  L  A  G  *  E  K  L  Y  T  E  S  S  K  A  *  S  S  P  E  S  I  *  G  V  A  F  A  F  L  R  *  C  E  G  K  W  R  S  R  I  F  *  V  E  D  P  G  K  S  G  F  K  G  W  *  S  F  I  R  R  V  D  G  S  I  *  C  N  *  R  L  C  S  T  E  R  S  K  C  E  S  S  T  V  E  K  H  *  Q  R :   I  Q  E  *  A  C  Q  T  P  R  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62812" stop="59795"/>
                    <exon start="59620" stop="59583"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRTSSLMAKGEAVAVKDAVHKLQLCLLEGIKDESQLIAAGSLLSRSDYQDVVTERSIANMCGYPLCSNSLPSERSRKGHYRISLKEHKVYDLHETYMYCSTNCVVNSGAFAGSLQDERSSTLNPAKLNQVLNLFKGLHLHSLDDVKENGDRGSSKLKIQEKVDLKGGEVSLEEWMGPSNAIEGYVPQRDRSVNPALLKNINKGSKNKHARLQDEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="67126" PGL_stop="69964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67126" e_stop="69964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="67126" e_stop="69964" e_length="2839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67126" stop="68005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67935" stop="69964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCGAGCAATGCAAGATCAGTCAGAGTCAAATGTGCCCGTTGTTGGACACATCGCGAGAGAAGCTCCTGAAGGGAATCTTTTAGAGACATGGACTGAGAAGCTAAAGAATACACAATTTCAGCTCAGTGATGTAACTAATGGATTCTCTGACCTGTTTGCTGTCAAGGATACCGCTGAAATTATGAATGTGAAGAAAGCTGGCTATCTGACTTCATCAGTGATGAAGCACTTTGTAGTCCCAAAGCTAGAAAGGGTTATCGATGAGGAGAAGAAGGTGTCACATTCTTCACTAATGGATGATACTGAAAAGGTCATACTGGAACCTGCAAAGATTAAGGTGAAGTTGAAGGCAGAGAATGTCGACATCTGTTACCCTCCAATTTTTCAGAGTGGAGGAGAGTTTGATCTGAGACCAAGTGCATCAAGCAATGATCAGAATCTTTACTATGATTCAACAAGTGTGATTATCTGTGCAATTGGTTCTCGATATAATAGTTACTGCTCAAATGTTGCTCGGACCTTTCTAATTGATGCCAATCCAATGCAAAGCAAGGCGTATGAAGTCCTTTTGAAGGCTCATGAGGCTGCAATTGGAGCTCTGAGACCAGGAAATAAGGCTGGAGATGTCTACCAAGCAGCCCTCAATGTGGTTGAAAAGGAGGCACCTGAATTGGTTGCAAATTTGACGAGATCTGCAGGAACTGGAATTGGGCTTGAGTTCCGTGAATCAGGGTTAAACCTCAACGGCAAGAATGATAGAATGCTGAAATCTGGCATGGTTTTTAATGTGTCTCTTGGGTTTCAGAATTTGCAAACAGAGTCTAAAAACCCCAAAACTGAAAAAATTTGTGTTTTGGTTGCTGATACAGTTGTTATTGGTCAAAATGCTCCAGAAGTGGTGACTTCTATGAGTTCTAAAGCCGTAAAAGATGTGGCTTACTCATTCAACGAGGATGAAGAAGAAGAGGAGGAGCAGCCGAAGGTCAAAGCTAAGCCTGTTGCTGCCAATGGACTCTCATCCAAGGCTACACTTAGATCAGTTAACCACGAGACATCAAGGGAGGAACTAAGACGGCAACACCAGGCAGAATTGGCCCGCCAAAAGAACGAAGAAACTGCACGAAGGCTCACAGGAGGAAGTTCTGGGGGTGCAGATAGCCGTGGTTCTGCGAAAGCCACTGGAGATTTGCTTGCATATAAGAACATTAATGATCTGCCACCTCCAAGAGAATTGATGATTCAGGTTGACCAGCGGAGTGAGGCTATTCTTTTACCTATTCATGGTACCATGATTCCATTCCATATTGCCACCGTGAAAAGTGTATCTAGTCAACAAGATACTAACCGTACCTGCTATATCCGAATAATGTTCAATGTTCCTGGCACTCCATTCACTCCTCATGACACAAATACTCTAAAGTTCCAGGGATCAATATATGTTAAAGAAGTTTCATTTCGTTCCAAGGACCCAAGGCACATCACTGAAGTGGTTCAACAAATAAGAACCCTCCGCAGGCAGGTTGTCTCTAGAGAATCAGAGAGAGCTGAGAGAGCAACTTTAGTAACACAAGAGAAACTTCAAGTTGCTGGAGCCAAATTTAAACCAATCAAGTTGTCAGATCTGTGGATTCGTCCAGTATTTGGTGGTCGCGGGAGAAAGCTTCCTGGTACTCTAGAGGCTCACACAAATGGATTCCGGTATGGAACTTCAAGGCCAGATGAGAGAGTGGATGTTATGTATGGTAACATCAAACACGCATTCTTCCAGCCAGCAGAAAAGGAGATGATTACAGTCCTCCACTTTCACCTGCACAATCACATAATGGTGGGGAACAAGAAAACCAAGGACGTGCAGTTCTATGTTGAAGTGATGGACGTTGTGCAGACAATTGGGGGTGGAAAAAGATCTGCTTATGATCCTGATGAGATTGAGGAGGAACAGCGTGAAAGGGATAGGAAAAACAAGATTAACATGGAATTTCAAACATTTGTGAATAAGGTAAATGACCTCTGGACCCAGCCTCAGTTTAAAGGGCTTGATTTGGAGTTTGATCAGCCGTTGAGAGAACTTGGATTCCACGGGGTACCCCACAAGTCAACAGCTTTTATAGTCCCAACATCTAGCTGCCTTGTTGAGCTCGTAGAGACACCATTTGTTGTGATCACTCTCTGTGAGATTGAGATAGTCAACTTGGAGAGGGTTGGTCTCGGGCAGAAGAATTTTGACATGACAATTATATTCAAGGACTTCAAAAGAGATGTTATGCGAATTGATTCTATCCCTTCAACTTCTCTTGATGGCATCAAGGAGTGGCTCGATACAACTGACCTTAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATACTGAAAACAATTACTGATGATCCGGAAGAGTTCATAGAGAATGGTGGATGGGAATTTTTGAATTTAGAAGGTACTGATTCGGAATCTGAGAACTCACAGGAGTCTGATCAAGGATATGAACCTTCAGATGTAGAGCCCGTCTCATCAGACGAGGAAGATGATGAAAGCGCATCACTAGTTGAGTCAGATGATGATGAAGGGGAGGACTCTGAGGAATATTCAGAAGAAGAAGGGAAAACATGGGAAGAGCTGGAAAGAGAAGCAAGCAATGCCGACAGAGAGAAAGGGGCTGAATCAGACAGTGACAATGATAGGAAGAGGAGGAATATGAAGCCTTTTGGGAAAGGTCGTCCTCCAGAGAGAAGAAATCTCTCTAGCAACATTTCCAAGAGACCCAGGTTTAGGTAAAGAGTGCAGTAGCACGTGCTTAACTGTCCTAGGATATTAGTATATGCTGCATA</gDNA_template>
            <first_frame> F  F  E  Q  C  K  I  S  Q  S  Q  M  C  P  L  L  D  T  S  R  E  K  L  L  K  G  I  F  *  R  H  G  L  R  S  *  R  I  H  N  F  S  S  V  M  *  L  M  D  S  L  T  C  L  L  S  R  I  P  L  K  L  *  M  *  R  K  L  A  I  *  L  H  Q  *  *  S  T  L  *  S  Q  S  *  K  G  L  S  M  R  R  R  R  C  H  I  L  H  *  W  M  I  L  K  R  S  Y  W  N  L  Q  R  L  R  *  S  *  R  Q  R  M  S  T  S  V  T  L  Q  F  F  R  V  E  E  S  L  I  *  D  Q  V  H  Q  A  M  I  R  I  F  T  M  I  Q  Q  V  *  L  S  V  Q  L  V  L  D  I  I  V  T  A  Q  M  L  L  G  P  F  *  L  M  P  I  Q  C  K  A  R  R  M  K  S  F  *  R  L  M  R  L  Q  L  E  L  *  D  Q  E  I  R  L  E  M  S  T  K  Q  P  S  M  W  L  K  R  R  H  L  N  W  L  Q  I  *  R  D  L  Q  E  L  E  L  G  L  S  S  V  N  Q  G  *  T  S  T  A  R  M  I  E  C  *  N  L  A  W  F  L  M  C  L  L  G  F  R  I  C  K  Q  S  L  K  T  P  K  L  K  K  F  V  F  W  L  L  I  Q  L  L  L  V  K  M  L  Q  K  W  *  L  L  *  V  L  K  P  *  K  M  W  L  T  H  S  T  R  M  K  K  K  R  R  S  S  R  R  S  K  L  S  L  L  L  P  M  D  S  H  P  R  L  H  L  D  Q  L  T  T  R  H  Q  G  R  N  *  D  G  N  T  R  Q  N  W  P  A  K  R  T  K  K  L  H  E  G  S  Q  E  E  V  L  G  V  Q  I  A  V  V  L  R  K  P  L  E  I  C  L  H  I  R  T  L  M  I  C  H  L  Q  E  N  *  *  F  R  L  T  S  G  V  R  L  F  F  Y  L  F  M  V  P  *  F  H  S  I  L  P  P  *  K  V  Y  L  V  N  K  I  L  T  V  P  A  I  S  E  *  C  S  M  F  L  A  L  H  S  L  L  M  T  Q  I  L  *  S  S  R  D  Q  Y  M  L  K  K  F  H  F  V  P  R  T  Q  G  T  S  L  K  W  F  N  K  *  E  P  S  A  G  R  L  S  L  E  N  Q  R  E  L  R  E  Q  L  *  *  H  K  R  N  F  K  L  L  E  P  N  L  N  Q  S  S  C  Q  I  C  G  F  V  Q  Y  L  V  V  A  G  E  S  F  L  V  L  *  R  L  T  Q  M  D  S  G  M  E  L  Q  G  Q  M  R  E  W  M  L  C  M  V  T  S  N  T  H  S  S  S  Q  Q  K  R  R  *  L  Q  S  S  T  F  T  C  T  I  T  *  W  W  G  T  R  K  P  R  T  C  S  S  M  L  K  *  W  T  L  C  R  Q  L  G  V  E  K  D  L  L  M  I  L  M  R  L  R  R  N  S  V  K  G  I  G  K  T  R  L  T  W  N  F  K  H  L  *  I  R  *  M  T  S  G  P  S  L  S  L  K  G  L  I  W  S  L  I  S  R  *  E  N  L  D  S  T  G  Y  P  T  S  Q  Q  L  L  *  S  Q  H  L  A  A  L  L  S  S  *  R  H  H  L  L  *  S  L  S  V  R  L  R  *  S  T  W  R  G  L  V  S  G  R  R  I  L  T  *  Q  L  Y  S  R  T  S  K  E  M  L  C  E  L  I  L  S  L  Q  L  L  L  M  A  S  R  S  G  S  I  Q  L  T  L  S  T  M  R  A  G  *  I  *  T  G  V  R  Y  *  K  Q  L  L  M  I  R  K  S  S  *  R  M  V  D  G  N  F  *  I  *  K  V  L  I  R  N  L  R  T  H  R  S  L  I  K  D  M  N  L  Q  M  *  S  P  S  H  Q  T  R  K  M  M  K  A  H  H  *  L  S  Q  M  M  M  K  G  R  T  L  R  N  I  Q  K  K  K  G  K  H  G  K  S  W  K  E  K  Q  A  M  P  T  E  R  K  G  L  N  Q  T  V  T  M  I  G  R  G  G  I  *  S  L  L  G  K  V  V  L  Q  R  E  E  I  S  L  A  T  F  P  R  D  P  G  L  G  K  E  C  S  S  T  C  L  T  V  L  G  Y  *  Y  M  L  H  </first_frame>
            <second_frame>  F  S  S  N  A  R  S  V  R  V  K  C  A  R  C  W  T  H  R  E  R  S  S  *  R  E  S  F  R  D  M  D  *  E  A  K  E  Y  T  I  S  A  Q  *  C  N  *  W  I  L  *  P  V  C  C  Q  G  Y  R  *  N  Y  E  C  E  E  S  W  L  S  D  F  I  S  D  E  A  L  C  S  P  K  A  R  K  G  Y  R  *  G  E  E  G  V  T  F  F  T  N  G  *  Y  *  K  G  H  T  G  T  C  K  D  *  G  E  V  E  G  R  E  C  R  H  L  L  P  S  N  F  S  E  W  R  R  V  *  S  E  T  K  C  I  K  Q  *  S  E  S  L  L  *  F  N  K  C  D  Y  L  C  N  W  F  S  I  *  *  L  L  L  K  C  C  S  D  L  S  N  *  C  Q  S  N  A  K  Q  G  V  *  S  P  F  E  G  S  *  G  C  N  W  S  S  E  T  R  K  *  G  W  R  C  L  P  S  S  P  Q  C  G  *  K  G  G  T  *  I  G  C  K  F  D  E  I  C  R  N  W  N  W  A  *  V  P  *  I  R  V  K  P  Q  R  Q  E  *  *  N  A  E  I  W  H  G  F  *  C  V  S  W  V  S  E  F  A  N  R  V  *  K  P  Q  N  *  K  N  L  C  F  G  C  *  Y  S  C  Y  W  S  K  C  S  R  S  G  D  F  Y  E  F  *  S  R  K  R  C  G  L  L  I  Q  R  G  *  R  R  R  G  G  A  A  E  G  Q  S  *  A  C  C  C  Q  W  T  L  I  Q  G  Y  T  *  I  S  *  P  R  D  I  K  G  G  T  K  T  A  T  P  G  R  I  G  P  P  K  E  R  R  N  C  T  K  A  H  R  R  K  F  W  G  C  R  *  P  W  F  C  E  S  H  W  R  F  A  C  I  *  E  H  *  *  S  A  T  S  K  R  I  D  D  S  G  *  P  A  E  *  G  Y  S  F  T  Y  S  W  Y  H  D  S  I  P  Y  C  H  R  E  K  C  I  *  S  T  R  Y  *  P  Y  L  L  Y  P  N  N  V  Q  C  S  W  H  S  I  H  S  S  *  H  K  Y  S  K  V  P  G  I  N  I  C  *  R  S  F  I  S  F  Q  G  P  K  A  H  H  *  S  G  S  T  N  K  N  P  P  Q  A  G  C  L  *  R  I  R  E  S  *  E  S  N  F  S  N  T  R  E  T  S  S  C  W  S  Q  I  *  T  N  Q  V  V  R  S  V  D  S  S  S  I  W  W  S  R  E  K  A  S  W  Y  S  R  G  S  H  K  W  I  P  V  W  N  F  K  A  R  *  E  S  G  C  Y  V  W  *  H  Q  T  R  I  L  P  A  S  R  K  G  D  D  Y  S  P  P  L  S  P  A  Q  S  H  N  G  G  E  Q  E  N  Q  G  R  A  V  L  C  *  S  D  G  R  C  A  D  N  W  G  W  K  K  I  C  L  *  S  *  *  D  *  G  G  T  A  *  K  G  *  E  K  Q  D  *  H  G  I  S  N  I  C  E  *  G  K  *  P  L  D  P  A  S  V  *  R  A  *  F  G  V  *  S  A  V  E  R  T  W  I  P  R  G  T  P  Q  V  N  S  F  Y  S  P  N  I  *  L  P  C  *  A  R  R  D  T  I  C  C  D  H  S  L  *  D  *  D  S  Q  L  G  E  G  W  S  R  A  E  E  F  *  H  D  N  Y  I  Q  G  L  Q  K  R  C  Y  A  N  *  F  Y  P  F  N  F  S  *  W  H  Q  G  V  A  R  Y  N  *  P  *  V  L  *  E  Q  A  E  S  E  L  A  S  D  T  E  N  N  Y  *  *  S  G  R  V  H  R  E  W  W  M  G  I  F  E  F  R  R  Y  *  F  G  I  *  E  L  T  G  V  *  S  R  I  *  T  F  R  C  R  A  R  L  I  R  R  G  R  *  *  K  R  I  T  S  *  V  R  *  *  *  R  G  G  L  *  G  I  F  R  R  R  R  E  N  M  G  R  A  G  K  R  S  K  Q  C  R  Q  R  E  R  G  *  I  R  Q  *  Q  *  *  E  E  E  E  Y  E  A  F  W  E  R  S  S  S  R  E  K  K  S  L  *  Q  H  F  Q  E  T  Q  V  *  V  K  S  A  V  A  R  A  *  L  S  *  D  I  S  I  C  C  I </second_frame>
            <third_frame>   F  R  A  M  Q  D  Q  S  E  S  N  V  P  V  V  G  H  I  A  R  E  A  P  E  G  N  L  L  E  T  W  T  E  K  L  K  N  T  Q  F  Q  L  S  D  V  T  N  G  F  S  D  L  F  A  V  K  D  T  A  E  I  M  N  V  K  K  A  G  Y  L  T  S  S  V  M  K  H  F  V  V  P  K  L  E  R  V  I  D  E  E  K  K  V  S  H  S  S  L  M  D  D  T  E  K  V  I  L  E  P  A  K  I  K  V  K  L  K  A  E  N  V  D  I  C  Y  P  P  I  F  Q  S  G  G  E  F  D  L  R  P  S  A  S  S  N  D  Q  N  L  Y  Y  D  S  T  S  V  I  I  C  A  I  G  S  R  Y  N  S  Y  C  S  N  V  A  R  T  F  L  I  D  A  N  P  M  Q  S  K  A  Y  E  V  L  L  K  A  H  E  A  A  I  G  A  L  R  P  G  N  K  A  G  D  V  Y  Q  A  A  L  N  V  V  E  K  E  A  P  E  L  V  A  N  L  T  R  S  A  G  T  G  I  G  L  E  F  R  E  S  G  L  N  L  N  G  K  N  D  R  M  L  K  S  G  M  V  F  N  V  S  L  G  F  Q  N  L  Q  T  E  S  K  N  P  K  T  E  K  I  C  V  L  V  A  D  T  V  V  I  G  Q  N  A  P  E  V  V  T  S  M  S  S  K  A  V  K  D  V  A  Y  S  F  N  E  D  E  E  E  E  E  E  Q  P  K  V  K  A  K  P  V  A  A  N  G  L  S  S  K  A  T  L  R  S  V  N  H  E  T  S  R  E  E  L  R  R  Q  H  Q  A  E  L  A  R  Q  K  N  E  E  T  A  R  R  L  T  G  G  S  S  G  G  A  D  S  R  G  S  A  K  A  T  G  D  L  L  A  Y  K  N  I  N  D  L  P  P  P  R  E  L  M  I  Q  V  D  Q  R  S  E  A  I  L  L  P  I  H  G  T  M  I  P  F  H  I  A  T  V  K  S  V  S  S  Q  Q  D  T  N  R  T  C  Y  I  R  I  M  F  N  V  P  G  T  P  F  T  P  H  D  T  N  T  L  K  F  Q  G  S  I  Y  V  K  E  V  S  F  R  S  K  D  P  R  H  I  T  E  V  V  Q  Q  I  R  T  L  R  R  Q  V  V  S  R  E  S  E  R  A  E  R  A  T  L  V  T  Q  E  K  L  Q  V  A  G  A  K  F  K  P  I  K  L  S  D  L  W  I  R  P  V  F  G  G  R  G  R  K  L  P  G  T  L  E  A  H  T  N  G  F  R  Y  G  T  S  R  P  D  E  R  V  D  V  M  Y  G  N  I  K  H  A  F  F  Q  P  A  E  K  E  M  I  T  V  L  H  F  H  L  H  N  H  I  M  V  G  N  K  K  T  K  D  V  Q  F  Y  V  E  V  M  D  V  V  Q  T  I  G  G  G  K  R  S  A  Y  D  P  D  E  I  E  E  E  Q  R  E  R  D  R  K  N  K  I  N  M  E  F  Q  T  F  V  N  K  V  N  D  L  W  T  Q  P  Q  F  K  G  L  D  L  E  F  D  Q  P  L  R  E  L  G  F  H  G  V  P  H  K  S  T  A  F  I  V  P  T  S  S  C  L  V  E  L  V  E  T  P  F  V  V  I  T  L  C  E  I  E  I  V  N  L  E  R  V  G  L  G  Q  K  N  F  D  M  T  I  I  F  K  D  F  K  R  D  V  M  R  I  D  S  I  P  S  T  S  L  D  G  I  K  E  W  L  D  T  T  D  L  K  Y  Y  E  S  R  L  N  L  N  W  R  Q  I  L  K  T  I  T  D  D  P  E  E  F  I  E  N  G  G  W  E  F  L  N  L  E  G  T  D  S  E  S  E  N  S  Q  E  S  D  Q  G  Y  E  P  S  D  V  E  P  V  S  S  D  E  E  D  D  E  S  A  S  L  V  E  S  D  D  D  E  G  E  D  S  E  E  Y  S  E  E  E  G  K  T  W  E  E  L  E  R  E  A  S  N  A  D  R  E  K  G  A  E  S  D  S  D  N  D  R  K  R  R  N  M  K  P  F  G  K  G  R  P  P  E  R  R  N  L  S  S  N  I  S  K  R  P  R  F  R  *  R  V  Q  *  H  V  L  N  C  P  R  I  L  V  Y  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67128" stop="69911"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2781</number_coding_nucleotides>
                  <number_encoded_amino_acids>927</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRAMQDQSESNVPVVGHIAREAPEGNLLETWTEKLKNTQFQLSDVTNGFSDLFAVKDTAEIMNVKKAGYLTSSVMKHFVVPKLERVIDEEKKVSHSSLMDDTEKVILEPAKIKVKLKAENVDICYPPIFQSGGEFDLRPSASSNDQNLYYDSTSVIICAIGSRYNSYCSNVARTFLIDANPMQSKAYEVLLKAHEAAIGALRPGNKAGDVYQAALNVVEKEAPELVANLTRSAGTGIGLEFRESGLNLNGKNDRMLKSGMVFNVSLGFQNLQTESKNPKTEKICVLVADTVVIGQNAPEVVTSMSSKAVKDVAYSFNEDEEEEEEQPKVKAKPVAANGLSSKATLRSVNHETSREELRRQHQAELARQKNEETARRLTGGSSGGADSRGSAKATGDLLAYKNINDLPPPRELMIQVDQRSEAILLPIHGTMIPFHIATVKSVSSQQDTNRTCYIRIMFNVPGTPFTPHDTNTLKFQGSIYVKEVSFRSKDPRHITEVVQQIRTLRRQVVSRESERAERATLVTQEKLQVAGAKFKPIKLSDLWIRPVFGGRGRKLPGTLEAHTNGFRYGTSRPDERVDVMYGNIKHAFFQPAEKEMITVLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTIGGGKRSAYDPDEIEEEQRERDRKNKINMEFQTFVNKVNDLWTQPQFKGLDLEFDQPLRELGFHGVPHKSTAFIVPTSSCLVELVETPFVVITLCEIEIVNLERVGLGQKNFDMTIIFKDFKRDVMRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPEEFIENGGWEFLNLEGTDSESENSQESDQGYEPSDVEPVSSDEEDDESASLVESDDDEGEDSEEYSEEEGKTWEELEREASNADREKGAESDSDNDRKRRNMKPFGKGRPPERRNLSSNISKRPRFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="78719" PGL_stop="83437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78994" e_stop="79149"/>
            <exon e_start="79778" e_stop="79886"/>
            <exon e_start="80826" e_stop="80861"/>
            <exon e_start="81151" e_stop="81265"/>
            <exon e_start="81412" e_stop="81493"/>
            <exon e_start="82006" e_stop="82101"/>
            <exon e_start="82238" e_stop="82339"/>
            <exon e_start="82434" e_stop="83277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.981"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.991"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78994" e_stop="79149" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="79778" e_stop="79886" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79887" i_stop="80825" i_length="939"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80826" e_stop="80861" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81151" e_stop="81265" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.627" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81412" e_stop="81493" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.957">
            <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82006" e_stop="82101" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82238" e_stop="82339" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="0.968">
            <gDNA_exon_boundary e_start="82434" e_stop="83277" e_length="844"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78994" stop="79149"/>
              <exon start="79778" stop="79886"/>
              <exon start="80826" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82442" stop="83277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA : GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTG : GCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG : ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA : GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA : ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA : GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT : TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAGGTTGGCTGTGTGCTATTTTTTACACAAAGTTTTTTACTTTTTCTATAGATAAGAGGCAGTAAATAATGTTTTTCCTTTGAATCCGAACAGGAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAGGTATGAAATATCACTTGGCGAAATTCTTATTCCTAAGTGATACAGTGACTACAGTCCCTGAATTTCAATTATAGTACGTAATCCTTTGACATTTTTGGAGGTAACATAGATACTAACCACACATGCCACAGATGAAGGGATGTTGTAGATCAGAATTTGCTTTTACTTGATCCTAGGCATTCTGTTTTTTTAGTTACATCTTCCCAACTAAATCAATTAGCCCGACCATGGTGATGTTACTCGTAATTACATTCATAAGTAGCTTGGTCCATCTTCATAGATGTCTGAGGATCGTTTGAGGTCAGACATCAAGACTACAACAGGTTCCAGTTAGAATATAGGAACATGGACTTCCAAAGATGCTGTTACCAGTATTGTTATTAATACACCCTACTTCCTAAGTTTTCATATTCAACGAAAGTAAGAGATAAGGTATAAAATTTGTGTCGATTCTGCTATTGCAGGTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCAT</gDNA_template>
            <first_frame> I  V  *  E  R  E  S  C  R  S  F  G  L  *  E  K  Q  S  N  M  A  R  K  K  I  R  E  Y  D  S  K  R  L  L  R  E  H  L  K  R  L  A  G  I  D  L  Q  I  C  S  A  Q  :  V  T  E  S  T  D  F  T  E  L  T  N  K  E  P  W  L  S  S  T  K  L  V  V  K  P  D  M  L  F  G  K  R  G  K  S   : G  N  F  L  M  G  V  F  D  V  F  Q   : D  L  D  F  S  F  I  E  M  N  P  F  T  L  V  N  G  E  P  Y  P  L  D  M  R  G  E  L  D  D  T  A  A  F  K  N  F  K  K :   W  G  S  I  E  F  P  L  P  F  G  R  V  L  S  P  T  E  S  F  I  H  S  L  D  E  K  :  T  S  A  S  L  K  F  T  V  L  N  P  K  G  R  I  W  T  M  V  A  G  G  G  A  S  V  I  Y  A  D  T  :  V  G  D  L  G  Y  A  S  E  L  G  N  Y  A  E  Y  S  G  A  P  N  E  E  E  V  L  Q  Y  A  R  V  V  L  D  :  C  A  T  A  N  P  D  G  R  K  R  A  L  I  V  G  G  G  I  A  N  F  T  D  V  A  A  T  F  N  G  I  I  R  A  L  R  E  K  V  G  C  V  L  F  F  T  Q  S  F  L  L  F  L  *  I  R  G  S  K  *  C  F  S  F  E  S  E  Q  E  A  K  L  K  A  A  R  M  H  I  Y  V  R  R  G  G  P  N  Y  Q  T  G  L  A  K  M  R  A  L  G  E  E  L  G  V  P  L  E  V  *  N  I  T  W  R  N  S  Y  S  *  V  I  Q  *  L  Q  S  L  N  F  N  Y  S  T  *  S  F  D  I  F  G  G  N  I  D  T  N  H  T  C  H  R  *  R  D  V  V  D  Q  N  L  L  L  L  D  P  R  H  S  V  F  L  V  T  S  S  Q  L  N  Q  L  A  R  P  W  *  C  Y  S  *  L  H  S  *  V  A  W  S  I  F  I  D  V  *  G  S  F  E  V  R  H  Q  D  Y  N  R  F  Q  L  E  Y  R  N  M  D  F  Q  R  C  C  Y  Q  Y  C  Y  *  Y  T  L  L  P  K  F  S  Y  S  T  K  V  R  D  K  V  *  N  L  C  R  F  C  Y  C  R  F  M  D  Q  R  L  Q  *  R  E  F  V  K  G  Q  L  I  A  </first_frame>
            <second_frame>  L  F  K  R  E  R  V  V  V  R  L  D  C  K  K  N  R  V  I  W  R  G  R  R  S  E  S  M  I  Q  R  G  F  *  G  S  I  *  N  A  L  L  A  L  I  F  R  S  A  L  L  K :   *  Q  N  L  Q  I  L  L  S  *  Q  T  K  N  H  G  F  H  R  Q  S  W  L  *  N  Q  T  C  C  L  E  S  V  E  R  V  :  A  I  S  L  W  V  F  L  M  C  F  K  :  I  S  I  L  V  S  *  R  *  T  H  L  R  L  *  M  E  S  L  T  H  W  I  *  E  E  S  W  M  T  Q  Q  P  S  K  I  L  R   : S  G  E  A  S  S  F  L  C  L  L  E  E  F  *  A  L  P  K  A  S  F  T  L  W  M  R  K :   L  V  P  L  *  N  L  Q  F  *  T  Q  K  V  V  S  G  Q  W  W  L  E  V  V  Q  A  L  Y  M  L  I  Q :   *  G  I  *  V  M  P  L  S  L  V  T  M  P  S  I  V  E  L  Q  M  K  R  R  F  C  N  M  L  E  *  F  *  I :   V  L  L  Q  I  L  M  G  V  R  E  L  *  L  L  E  V  V  L  P  T  S  L  M  *  L  L  L  S  M  G  L  F  G  L  S  G  R  R  L  A  V  C  Y  F  L  H  K  V  F  Y  F  F  Y  R  *  E  A  V  N  N  V  F  P  L  N  P  N  R  K  P  S  *  K  R  L  E  C  I  S  M  Y  E  E  V  V  Q  I  I  R  L  V  *  Q  K  C  A  P  *  E  R  N  L  E  F  P  L  R  Y  E  I  S  L  G  E  I  L  I  P  K  *  Y  S  D  Y  S  P  *  I  S  I  I  V  R  N  P  L  T  F  L  E  V  T  *  I  L  T  T  H  A  T  D  E  G  M  L  *  I  R  I  C  F  Y  L  I  L  G  I  L  F  F  *  L  H  L  P  N  *  I  N  *  P  D  H  G  D  V  T  R  N  Y  I  H  K  *  L  G  P  S  S  *  M  S  E  D  R  L  R  S  D  I  K  T  T  T  G  S  S  *  N  I  G  T  W  T  S  K  D  A  V  T  S  I  V  I  N  T  P  Y  F  L  S  F  H  I  Q  R  K  *  E  I  R  Y  K  I  C  V  D  S  A  I  A  G  L  W  T  R  G  Y  N  D  G  N  L  *  R  G  N  *  L  H </second_frame>
            <third_frame>   C  L  R  E  R  E  L  S  F  V  W  I  V  R  K  T  E  *  Y  G  E  E  E  D  Q  R  V  *  F  K  E  A  S  K  G  A  F  E  T  P  C  W  H  *  S  S  D  L  L  C  S   : S  D  R  I  Y  R  F  Y  *  V  N  K  Q  R  T  M  A  F  I  D  K  A  G  C  K  T  R  H  A  V  W  K  A  W  K  E  W :   Q  F  P  Y  G  C  F  *  C  V  S  R :   S  R  F  *  F  H  R  D  E  P  I  Y  A  C  K  W  R  A  L  P  I  G  Y  E  R  R  V  G  *  H  S  S  L  Q  K  F  *  E  :  V  G  K  H  R  V  S  S  A  F  W  K  S  F  E  P  Y  R  K  L  H  S  L  F  G  *  E   : N  *  C  L  F  K  I  Y  S  F  E  P  K  R  S  Y  L  D  N  G  G  W  R  W  C  K  R  Y  I  C  *  Y   : S  R  G  F  R  L  C  L  *  A  W  *  L  C  R  V  *  W  S  S  K  *  R  G  G  S  A  I  C  S  S  S  S  R   : L  C  Y  C  K  S  *  W  A  *  E  S  S  D  C  W  R  W  Y  C  Q  L  H  *  C  S  C  Y  F  Q  W  D  Y  S  G  S  Q  G  E  G  W  L  C  A  I  F  Y  T  K  F  F  T  F  S  I  D  K  R  Q  *  I  M  F  F  L  *  I  R  T  G  S  Q  A  K  S  G  *  N  A  Y  L  C  T  K  R  W  S  K  L  S  D  W  S  S  K  N  A  R  P  R  R  G  T  W  S  S  P  *  G  M  K  Y  H  L  A  K  F  L  F  L  S  D  T  V  T  T  V  P  E  F  Q  L  *  Y  V  I  L  *  H  F  W  R  *  H  R  Y  *  P  H  M  P  Q  M  K  G  C  C  R  S  E  F  A  F  T  *  S  *  A  F  C  F  F  S  Y  I  F  P  T  K  S  I  S  P  T  M  V  M  L  L  V  I  T  F  I  S  S  L  V  H  L  H  R  C  L  R  I  V  *  G  Q  T  S  R  L  Q  Q  V  P  V  R  I  *  E  H  G  L  P  K  M  L  L  P  V  L  L  L  I  H  P  T  S  *  V  F  I  F  N  E  S  K  R  *  G  I  K  F  V  S  I  L  L  L  Q  V  Y  G  P  E  A  T  M  T  G  I  C  K  G  A  I  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79036" stop="79149"/>
                    <exon start="79778" stop="79886"/>
                    <exon start="80826" stop="80861"/>
                    <exon start="81151" stop="81265"/>
                    <exon start="81412" stop="81493"/>
                    <exon start="82006" stop="82101"/>
                    <exon start="82238" stop="82339"/>
                    <exon start="82434" stop="82598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQSNMARKKIREYDSKRLLREHLKRLAGIDLQICSAQVTESTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGNFLMGVFDVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGSIEFPLPFGRVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATANPDGRKRALIVGGGIANFTDVAATFNGIIRALREKVGCVLFFTQSFLLFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78719" e_stop="79149"/>
            <exon e_start="79778" e_stop="79954"/>
            <exon e_start="80035" e_stop="80196"/>
            <exon e_start="80357" e_stop="80437"/>
            <exon e_start="80810" e_stop="80861"/>
            <exon e_start="81151" e_stop="81265"/>
            <exon e_start="81412" e_stop="81493"/>
            <exon e_start="82006" e_stop="82101"/>
            <exon e_start="82238" e_stop="82339"/>
            <exon e_start="82434" e_stop="82550"/>
            <exon e_start="82641" e_stop="82757"/>
            <exon e_start="83222" e_stop="83437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78719" e_stop="79149" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79150" i_stop="79777" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79778" e_stop="79954" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79955" i_stop="80034" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80035" e_stop="80196" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80197" i_stop="80356" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80357" e_stop="80437" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80438" i_stop="80809" i_length="372"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80810" e_stop="80861" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="80862" i_stop="81150" i_length="289"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81151" e_stop="81265" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.627" acc_prob="0.967">
            <gDNA_intron_boundary i_start="81266" i_stop="81411" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81412" e_stop="81493" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.957">
            <gDNA_intron_boundary i_start="81494" i_stop="82005" i_length="512"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82006" e_stop="82101" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82102" i_stop="82237" i_length="136"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82238" e_stop="82339" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82340" i_stop="82433" i_length="94"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="82434" e_stop="82550" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="82551" i_stop="82640" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="82641" e_stop="82757" e_length="117"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82758" i_stop="83221" i_length="464"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="83222" e_stop="83437" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78719" stop="79149"/>
              <exon start="79778" stop="79954"/>
              <exon start="80035" stop="80196"/>
              <exon start="80357" stop="80437"/>
              <exon start="80810" stop="80861"/>
              <exon start="81151" stop="81265"/>
              <exon start="81412" stop="81493"/>
              <exon start="82006" stop="82101"/>
              <exon start="82238" stop="82339"/>
              <exon start="82434" stop="82550"/>
              <exon start="82641" stop="82757"/>
              <exon start="83222" stop="83437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGGCGCTAATAACATTATCAAGGAAAAATAGTTGGATTATGAAAATCAGGCAGCATCATTATTCTTCCCAATACAGTATCTTCCCTTGTTAAAAACGCCCAACTACCTACTCCCCTGTCCCCACCCCCACCTCAGCTCATTCATCTCACTCACCAGTTGTTGCCTGGTTGGTGAATACCCACAATTCTTCTACCTTAAGATAATTCCATAAATTTCATAGTTCTAGATCTTCGTTTTTTGTAATCAATTGCATACCCACCAACTGTTTGTATAATTGTTTAAGAGAGAGAGAGTTGTCGTTCGTTTGGATTGTAAGAAAAACAGAGTAATATGGCGAGGAAGAAGATCAGAGAGTATGATTCAAAGAGGCTTCTAAGGGAGCATTTGAAACGCCTTGCTGGCATTGATCTTCAGATCTGCTCTGCTCAA : GTGACAGAATCTACAGATTTTACTGAGTTAACAAACAAAGAACCATGGCTTTCATCGACAAAGCTGGTTGTAAAACCAGACATGCTGTTTGGAAAGCGTGGAAAGAGTGGCTTGGTAGCTTTGAATCTGGATCTAGCAGGAGTTGCTGAGTTTGTAAAAACACGACTTGGTGTGGAG : GTTGAAATGGGTGGCTGCAAGGCACCTATAACAACATTTATTGTTGAACCATTTGTTCCCCATGACCAAGAATATTACCTTTCCATAGTCTCTGAAAGGTTGGGCTGCACAATTAGCTTTTCAGAATGTGGAGGCATTGAGATTGAAGAGAACTGGGACAAG : GTCAAGACAATATTCCTTCCAACGGAGAAACCTATGACCCTAGAGGCGTGTGCTCCACTGATTGCTACTCTGCCCTTGGAG : GTACGGGGAAAGATTGGCAATTTCCTTATGGGTGTTTTTGATGTGTTTCAAG : ATCTCGATTTTAGTTTCATAGAGATGAACCCATTTACGCTTGTAAATGGAGAGCCTTACCCATTGGATATGAGAGGAGAGTTGGATGACACAGCAGCCTTCAAAAATTTTAAGAA : GTGGGGAAGCATCGAGTTTCCTCTGCCTTTTGGAAGAGTTTTGAGCCCTACCGAAAGCTTCATTCACTCTTTGGATGAGAAA : ACTAGTGCCTCTTTAAAATTTACAGTTTTGAACCCAAAAGGTCGTATCTGGACAATGGTGGCTGGAGGTGGTGCAAGCGTTATATATGCTGATACA : GTAGGGGATTTAGGTTATGCCTCTGAGCTTGGTAACTATGCCGAGTATAGTGGAGCTCCAAATGAAGAGGAGGTTCTGCAATATGCTCGAGTAGTTCTAGAT : TGTGCTACTGCAAATCCTGATGGGCGTAAGAGAGCTCTGATTGTTGGAGGTGGTATTGCCAACTTCACTGATGTAGCTGCTACTTTCAATGGGATTATTCGGGCTCTCAGGGAGAAG : GAAGCCAAGCTAAAAGCGGCTAGAATGCATATCTATGTACGAAGAGGTGGTCCAAATTATCAGACTGGTCTAGCAAAAATGCGCGCCCTAGGAGAGGAACTTGGAGTTCCCCTTGAG : GTTTATGGACCAGAGGCTACAATGACGGGAATTTGTAAAGGGGCAATTGATTGCATTATGTCTGAAGCATAAGTGCCAAATGAGAAAGAAGACTTGTGTTACATTCTTGCAATTAAGAAGAAACTTTGTTGGATATTTAATTTGCCTTCTGATATTGTTTTGTTACAAATGGGACCTTTAAAGAATAATTTGAGATCCTTTTGTTTTACCTGGAAA</gDNA_template>
            <first_frame> R  G  A  N  N  I  I  K  E  K  *  L  D  Y  E  N  Q  A  A  S  L  F  F  P  I  Q  Y  L  P  L  L  K  T  P  N  Y  L  L  P  C  P  H  P  H  L  S  S  F  I  S  L  T  S  C  C  L  V  G  E  Y  P  Q  F  F  Y  L  K  I  I  P  *  I  S  *  F  *  I  F  V  F  C  N  Q  L  H  T  H  Q  L  F  V  *  L  F  K  R  E  R  V  V  V  R  L  D  C  K  K  N  R  V  I  W  R  G  R  R  S  E  S  M  I  Q  R  G  F  *  G  S  I  *  N  A  L  L  A  L  I  F  R  S  A  L  L  K :   *  Q  N  L  Q  I  L  L  S  *  Q  T  K  N  H  G  F  H  R  Q  S  W  L  *  N  Q  T  C  C  L  E  S  V  E  R  V  A  W  *  L  *  I  W  I  *  Q  E  L  L  S  L  *  K  H  D  L  V  W  R :   L  K  W  V  A  A  R  H  L  *  Q  H  L  L  L  N  H  L  F  P  M  T  K  N  I  T  F  P  *  S  L  K  G  W  A  A  Q  L  A  F  Q  N  V  E  A  L  R  L  K  R  T  G  T  R :   S  R  Q  Y  S  F  Q  R  R  N  L  *  P  *  R  R  V  L  H  *  L  L  L  C  P  W  R :   Y  G  E  R  L  A  I  S  L  W  V  F  L  M  C  F  K  :  I  S  I  L  V  S  *  R  *  T  H  L  R  L  *  M  E  S  L  T  H  W  I  *  E  E  S  W  M  T  Q  Q  P  S  K  I  L  R   : S  G  E  A  S  S  F  L  C  L  L  E  E  F  *  A  L  P  K  A  S  F  T  L  W  M  R  K :   L  V  P  L  *  N  L  Q  F  *  T  Q  K  V  V  S  G  Q  W  W  L  E  V  V  Q  A  L  Y  M  L  I  Q :   *  G  I  *  V  M  P  L  S  L  V  T  M  P  S  I  V  E  L  Q  M  K  R  R  F  C  N  M  L  E  *  F  *  I :   V  L  L  Q  I  L  M  G  V  R  E  L  *  L  L  E  V  V  L  P  T  S  L  M  *  L  L  L  S  M  G  L  F  G  L  S  G  R  R :   K  P  S  *  K  R  L  E  C  I  S  M  Y  E  E  V  V  Q  I  I  R  L  V  *  Q  K  C  A  P  *  E  R  N  L  E  F  P  L  R :   F  M  D  Q  R  L  Q  *  R  E  F  V  K  G  Q  L  I  A  L  C  L  K  H  K  C  Q  M  R  K  K  T  C  V  T  F  L  Q  L  R  R  N  F  V  G  Y  L  I  C  L  L  I  L  F  C  Y  K  W  D  L  *  R  I  I  *  D  P  F  V  L  P  G   </first_frame>
            <second_frame>  G  A  L  I  T  L  S  R  K  N  S  W  I  M  K  I  R  Q  H  H  Y  S  S  Q  Y  S  I  F  P  C  *  K  R  P  T  T  Y  S  P  V  P  T  P  T  S  A  H  S  S  H  S  P  V  V  A  W  L  V  N  T  H  N  S  S  T  L  R  *  F  H  K  F  H  S  S  R  S  S  F  F  V  I  N  C  I  P  T  N  C  L  Y  N  C  L  R  E  R  E  L  S  F  V  W  I  V  R  K  T  E  *  Y  G  E  E  E  D  Q  R  V  *  F  K  E  A  S  K  G  A  F  E  T  P  C  W  H  *  S  S  D  L  L  C  S   : S  D  R  I  Y  R  F  Y  *  V  N  K  Q  R  T  M  A  F  I  D  K  A  G  C  K  T  R  H  A  V  W  K  A  W  K  E  W  L  G  S  F  E  S  G  S  S  R  S  C  *  V  C  K  N  T  T  W  C  G   : G  *  N  G  W  L  Q  G  T  Y  N  N  I  Y  C  *  T  I  C  S  P  *  P  R  I  L  P  F  H  S  L  *  K  V  G  L  H  N  *  L  F  R  M  W  R  H  *  D  *  R  E  L  G  Q   : G  Q  D  N  I  P  S  N  G  E  T  Y  D  P  R  G  V  C  S  T  D  C  Y  S  A  L  G   : G  T  G  K  D  W  Q  F  P  Y  G  C  F  *  C  V  S  R :   S  R  F  *  F  H  R  D  E  P  I  Y  A  C  K  W  R  A  L  P  I  G  Y  E  R  R  V  G  *  H  S  S  L  Q  K  F  *  E  :  V  G  K  H  R  V  S  S  A  F  W  K  S  F  E  P  Y  R  K  L  H  S  L  F  G  *  E   : N  *  C  L  F  K  I  Y  S  F  E  P  K  R  S  Y  L  D  N  G  G  W  R  W  C  K  R  Y  I  C  *  Y   : S  R  G  F  R  L  C  L  *  A  W  *  L  C  R  V  *  W  S  S  K  *  R  G  G  S  A  I  C  S  S  S  S  R   : L  C  Y  C  K  S  *  W  A  *  E  S  S  D  C  W  R  W  Y  C  Q  L  H  *  C  S  C  Y  F  Q  W  D  Y  S  G  S  Q  G  E   : G  S  Q  A  K  S  G  *  N  A  Y  L  C  T  K  R  W  S  K  L  S  D  W  S  S  K  N  A  R  P  R  R  G  T  W  S  S  P  *   : G  L  W  T  R  G  Y  N  D  G  N  L  *  R  G  N  *  L  H  Y  V  *  S  I  S  A  K  *  E  R  R  L  V  L  H  S  C  N  *  E  E  T  L  L  D  I  *  F  A  F  *  Y  C  F  V  T  N  G  T  F  K  E  *  F  E  I  L  L  F  Y  L  E  </second_frame>
            <third_frame>   G  R  *  *  H  Y  Q  G  K  I  V  G  L  *  K  S  G  S  I  I  I  L  P  N  T  V  S  S  L  V  K  N  A  Q  L  P  T  P  L  S  P  P  P  P  Q  L  I  H  L  T  H  Q  L  L  P  G  W  *  I  P  T  I  L  L  P  *  D  N  S  I  N  F  I  V  L  D  L  R  F  L  *  S  I  A  Y  P  P  T  V  C  I  I  V  *  E  R  E  S  C  R  S  F  G  L  *  E  K  Q  S  N  M  A  R  K  K  I  R  E  Y  D  S  K  R  L  L  R  E  H  L  K  R  L  A  G  I  D  L  Q  I  C  S  A  Q  :  V  T  E  S  T  D  F  T  E  L  T  N  K  E  P  W  L  S  S  T  K  L  V  V  K  P  D  M  L  F  G  K  R  G  K  S  G  L  V  A  L  N  L  D  L  A  G  V  A  E  F  V  K  T  R  L  G  V  E  :  V  E  M  G  G  C  K  A  P  I  T  T  F  I  V  E  P  F  V  P  H  D  Q  E  Y  Y  L  S  I  V  S  E  R  L  G  C  T  I  S  F  S  E  C  G  G  I  E  I  E  E  N  W  D  K  :  V  K  T  I  F  L  P  T  E  K  P  M  T  L  E  A  C  A  P  L  I  A  T  L  P  L  E  :  V  R  G  K  I  G  N  F  L  M  G  V  F  D  V  F  Q   : D  L  D  F  S  F  I  E  M  N  P  F  T  L  V  N  G  E  P  Y  P  L  D  M  R  G  E  L  D  D  T  A  A  F  K  N  F  K  K :   W  G  S  I  E  F  P  L  P  F  G  R  V  L  S  P  T  E  S  F  I  H  S  L  D  E  K  :  T  S  A  S  L  K  F  T  V  L  N  P  K  G  R  I  W  T  M  V  A  G  G  G  A  S  V  I  Y  A  D  T  :  V  G  D  L  G  Y  A  S  E  L  G  N  Y  A  E  Y  S  G  A  P  N  E  E  E  V  L  Q  Y  A  R  V  V  L  D  :  C  A  T  A  N  P  D  G  R  K  R  A  L  I  V  G  G  G  I  A  N  F  T  D  V  A  A  T  F  N  G  I  I  R  A  L  R  E  K  :  E  A  K  L  K  A  A  R  M  H  I  Y  V  R  R  G  G  P  N  Y  Q  T  G  L  A  K  M  R  A  L  G  E  E  L  G  V  P  L  E  :  V  Y  G  P  E  A  T  M  T  G  I  C  K  G  A  I  D  C  I  M  S  E  A  *  V  P  N  E  K  E  D  L  C  Y  I  L  A  I  K  K  K  L  C  W  I  F  N  L  P  S  D  I  V  L  L  Q  M  G  P  L  K  N  N  L  R  S  F  C  F  T  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79036" stop="79149"/>
                    <exon start="79778" stop="79954"/>
                    <exon start="80035" stop="80196"/>
                    <exon start="80357" stop="80437"/>
                    <exon start="80810" stop="80861"/>
                    <exon start="81151" stop="81265"/>
                    <exon start="81412" stop="81493"/>
                    <exon start="82006" stop="82101"/>
                    <exon start="82238" stop="82339"/>
                    <exon start="82434" stop="82550"/>
                    <exon start="82641" stop="82757"/>
                    <exon start="83222" stop="83293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQSNMARKKIREYDSKRLLREHLKRLAGIDLQICSAQVTESTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAGVAEFVKTRLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLEACAPLIATLPLEVRGKIGNFLMGVFDVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGSIEFPLPFGRVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATANPDGRKRALIVGGGIANFTDVAATFNGIIRALREKEAKLKAARMHIYVRRGGPNYQTGLAKMRALGEELGVPLEVYGPEATMTGICKGAIDCIMSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="88760" PGL_stop="90037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88760" e_stop="89021"/>
            <exon e_start="89140" e_stop="90037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="88760" e_stop="89021" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89022" i_stop="89139" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="89140" e_stop="90037" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88760" stop="89021"/>
              <exon start="89140" stop="90037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563367" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCATAAATAGTATATAAATTACTCCACTTTTCAAATCCCTATAACTAAAACACATAACGATGAAATTGTCAACTTTGTTCATCTTATATTTTTTCACTGTTTCTACACTTGCAAATGCATCTCTTAAGATTGGTTACTACCATTCAAGTTGCCCAAATGCAGAATCCATTGTCAGAAAAGCAGTCAACAAAGCCGTCTCTCGTAACCCTGGCCTTGGCGCTGGCATTATCAGGATGCATTTCCATGATTGTTTTGTTAGG : GGATGTGATGCCTCAATCCTTTTGGATCCAACTCCAGGGAATCCAACAGAAAAAGAACATCCAGCAAATAATCCAAGCTTACGAGGCTATGAAGTGATCGACGAAGCAAAAATTGAACTAGAATCTATTTGCCCAGAAACAGTTTCATGTTCAGATATCATTGCATTTGCTGCAAGAGATAGTGCTTTTAAGCTTGGAGGCATTAGATATTCAGTTCCATCAGGTCGTCGAGATGGAAGAGTATCCATTAAAGACGAACCAACCGCAAATCTCCCCCCTTCCACATTAAATGCTGGAGAGCTTGAGGAAAATTTTGCAAAAAAAGGACTTTCTTTAGATGAGATGGTCACACTTTCGGGTGCACATTCTATTGGAAGATCACATTGTTCTTCCTTTTCAGATAGACTTTACTCTTTCAATTCAACTCACCCGCAAGATCCTTCGATGGATCCTAAATTAGCCCAACAATTGATCAAGAGATGTCCGCGTCCTTCTACCACTGATCCAATTGCTCCACTTGACGTTGATACTCCAAATAGGCTGGACAATAAGTACTATCTCAATTTGAAGAATAAGAGAGGAGTGTTAACCTCAGATCAGACGCTATGGAACAGTCCTTCAACGGCTAGGATGGCGAGGAGTAACGCGATTCATGGTGCGAATTGGGCTCATAAATTTGCTGATGCAATGGTGAAAATGGGATCCATAGAGGTTATGACTGGGATACAGGGAGAGATCAGGAAGAATTGCAGGGTTGTGAATTAATCTATTAATACTTCTTCTTTTTTTTTGTTCTTGTAATTGTATCATCACATTTTTTTTTTATTCATTTTCAATGTCGATAACAAAGTAACTGATTCTTTTCAATTGTCATAATTTAAATATATTGATTTAAGAG</gDNA_template>
            <first_frame> C  H  K  *  Y  I  N  Y  S  T  F  Q  I  P  I  T  K  T  H  N  D  E  I  V  N  F  V  H  L  I  F  F  H  C  F  Y  T  C  K  C  I  S  *  D  W  L  L  P  F  K  L  P  K  C  R  I  H  C  Q  K  S  S  Q  Q  S  R  L  S  *  P  W  P  W  R  W  H  Y  Q  D  A  F  P  *  L  F  C  *   : G  M  *  C  L  N  P  F  G  S  N  S  R  E  S  N  R  K  R  T  S  S  K  *  S  K  L  T  R  L  *  S  D  R  R  S  K  N  *  T  R  I  Y  L  P  R  N  S  F  M  F  R  Y  H  C  I  C  C  K  R  *  C  F  *  A  W  R  H  *  I  F  S  S  I  R  S  S  R  W  K  S  I  H  *  R  R  T  N  R  K  S  P  P  F  H  I  K  C  W  R  A  *  G  K  F  C  K  K  R  T  F  F  R  *  D  G  H  T  F  G  C  T  F  Y  W  K  I  T  L  F  F  L  F  R  *  T  L  L  F  Q  F  N  S  P  A  R  S  F  D  G  S  *  I  S  P  T  I  D  Q  E  M  S  A  S  F  Y  H  *  S  N  C  S  T  *  R  *  Y  S  K  *  A  G  Q  *  V  L  S  Q  F  E  E  *  E  R  S  V  N  L  R  S  D  A  M  E  Q  S  F  N  G  *  D  G  E  E  *  R  D  S  W  C  E  L  G  S  *  I  C  *  C  N  G  E  N  G  I  H  R  G  Y  D  W  D  T  G  R  D  Q  E  E  L  Q  G  C  E  L  I  Y  *  Y  F  F  F  F  F  V  L  V  I  V  S  S  H  F  F  F  I  H  F  Q  C  R  *  Q  S  N  *  F  F  S  I  V  I  I  *  I  Y  *  F  K   </first_frame>
            <second_frame>  V  I  N  S  I  *  I  T  P  L  F  K  S  L  *  L  K  H  I  T  M  K  L  S  T  L  F  I  L  Y  F  F  T  V  S  T  L  A  N  A  S  L  K  I  G  Y  Y  H  S  S  C  P  N  A  E  S  I  V  R  K  A  V  N  K  A  V  S  R  N  P  G  L  G  A  G  I  I  R  M  H  F  H  D  C  F  V  R  :  G  C  D  A  S  I  L  L  D  P  T  P  G  N  P  T  E  K  E  H  P  A  N  N  P  S  L  R  G  Y  E  V  I  D  E  A  K  I  E  L  E  S  I  C  P  E  T  V  S  C  S  D  I  I  A  F  A  A  R  D  S  A  F  K  L  G  G  I  R  Y  S  V  P  S  G  R  R  D  G  R  V  S  I  K  D  E  P  T  A  N  L  P  P  S  T  L  N  A  G  E  L  E  E  N  F  A  K  K  G  L  S  L  D  E  M  V  T  L  S  G  A  H  S  I  G  R  S  H  C  S  S  F  S  D  R  L  Y  S  F  N  S  T  H  P  Q  D  P  S  M  D  P  K  L  A  Q  Q  L  I  K  R  C  P  R  P  S  T  T  D  P  I  A  P  L  D  V  D  T  P  N  R  L  D  N  K  Y  Y  L  N  L  K  N  K  R  G  V  L  T  S  D  Q  T  L  W  N  S  P  S  T  A  R  M  A  R  S  N  A  I  H  G  A  N  W  A  H  K  F  A  D  A  M  V  K  M  G  S  I  E  V  M  T  G  I  Q  G  E  I  R  K  N  C  R  V  V  N  *  S  I  N  T  S  S  F  F  L  F  L  *  L  Y  H  H  I  F  F  L  F  I  F  N  V  D  N  K  V  T  D  S  F  Q  L  S  *  F  K  Y  I  D  L  R  </second_frame>
            <third_frame>   S  *  I  V  Y  K  L  L  H  F  S  N  P  Y  N  *  N  T  *  R  *  N  C  Q  L  C  S  S  Y  I  F  S  L  F  L  H  L  Q  M  H  L  L  R  L  V  T  T  I  Q  V  A  Q  M  Q  N  P  L  S  E  K  Q  S  T  K  P  S  L  V  T  L  A  L  A  L  A  L  S  G  C  I  S  M  I  V  L  L  G :   D  V  M  P  Q  S  F  W  I  Q  L  Q  G  I  Q  Q  K  K  N  I  Q  Q  I  I  Q  A  Y  E  A  M  K  *  S  T  K  Q  K  L  N  *  N  L  F  A  Q  K  Q  F  H  V  Q  I  S  L  H  L  L  Q  E  I  V  L  L  S  L  E  A  L  D  I  Q  F  H  Q  V  V  E  M  E  E  Y  P  L  K  T  N  Q  P  Q  I  S  P  L  P  H  *  M  L  E  S  L  R  K  I  L  Q  K  K  D  F  L  *  M  R  W  S  H  F  R  V  H  I  L  L  E  D  H  I  V  L  P  F  Q  I  D  F  T  L  S  I  Q  L  T  R  K  I  L  R  W  I  L  N  *  P  N  N  *  S  R  D  V  R  V  L  L  P  L  I  Q  L  L  H  L  T  L  I  L  Q  I  G  W  T  I  S  T  I  S  I  *  R  I  R  E  E  C  *  P  Q  I  R  R  Y  G  T  V  L  Q  R  L  G  W  R  G  V  T  R  F  M  V  R  I  G  L  I  N  L  L  M  Q  W  *  K  W  D  P  *  R  L  *  L  G  Y  R  E  R  S  G  R  I  A  G  L  *  I  N  L  L  I  L  L  L  F  F  C  S  C  N  C  I  I  T  F  F  F  Y  S  F  S  M  S  I  T  K  *  L  I  L  F  N  C  H  N  L  N  I  L  I  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88806" stop="89021"/>
                    <exon start="89140" stop="89904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKHITMKLSTLFILYFFTVSTLANASLKIGYYHSSCPNAESIVRKAVNKAVSRNPGLGAGIIRMHFHDCFVRGCDASILLDPTPGNPTEKEHPANNPSLRGYEVIDEAKIELESICPETVSCSDIIAFAARDSAFKLGGIRYSVPSGRRDGRVSIKDEPTANLPPSTLNAGELEENFAKKGLSLDEMVTLSGAHSIGRSHCSSFSDRLYSFNSTHPQDPSMDPKLAQQLIKRCPRPSTTDPIAPLDVDTPNRLDNKYYLNLKNKRGVLTSDQTLWNSPSTARMARSNAIHGANWAHKFADAMVKMGSIEVMTGIQGEIRKNCRVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="97029" PGL_stop="98772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97029" e_stop="97162"/>
            <exon e_start="98108" e_stop="98627"/>
            <exon e_start="98679" e_stop="98772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="0.985"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="97029" e_stop="97162" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="97163" i_stop="98107" i_length="945"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="98108" e_stop="98627" e_length="520"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98628" i_stop="98678" i_length="51"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="98679" e_stop="98772" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97029" stop="97162"/>
              <exon start="98108" stop="98627"/>
              <exon start="98679" stop="98772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97055" stop="97162"/>
              <exon start="98108" stop="98431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGCATTTGGCGAACCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG : AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGCCACATGTTTGGCTATGCAACAGATGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCGCCTGGTTGAGGCCTGATGGCAAGACCCAAGTTACT : GTTCTTATCTCCACCCAACACGATGAGACCGTTACCAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAACCAGTCATCCCAGAGA</gDNA_template>
            <first_frame> A  S  I  W  R  T  K  N  T  K  R  L  F  L  S  R  G  K  K  I  A  P  F  R  H  L  *  S  S  F  S  L  C  S  P  L  G  S  S  L  S  C  F  L  R :   M  E  T  F  L  F  T  S  E  S  V  N  E  G  H  P  D  K  L  C  D  Q  I  S  D  A  V  L  D  A  C  L  E  Q  D  P  E  S  K  V  A  C  E  T  C  T  K  T  N  L  V  M  V  F  G  E  I  T  T  K  A  I  V  D  Y  E  K  I  V  R  D  T  C  R  N  I  G  F  V  S  D  D  V  G  L  D  A  D  N  C  K  V  L  V  Y  I  E  Q  Q  S  P  D  I  A  Q  G  V  H  G  H  L  T  K  R  P  E  E  I  G  A  G  D  Q  G  H  M  F  G  Y  A  T  D  E  T  P  E  L  M  P  L  S  H  V  L  A  T  K  L  G  A  R  L  T  E  V  R  K  N  G  T  C  A  W  L  R  P  D  G  K  T  Q  V  T  :  V  L  I  S  T  Q  H  D  E  T  V  T  N  D  E  I  A  R  D  L  K  E  H  V  I  K  P  V  I  P  E  </first_frame>
            <second_frame>  Q  A  F  G  E  P  K  I  Q  R  G  Y  F  S  Q  G  V  K  R  L  P  L  F  D  I  Y  N  P  L  F  L  F  V  R  R  W  V  L  H  F  P  V  S  *   : E  W  K  L  S  Y  S  P  P  S  L  *  T  R  V  T  Q  T  S  S  V  I  R  S  L  M  Q  F  L  M  P  A  L  S  K  I  P  R  A  K  L  H  V  K  L  A  P  R  P  T  W  S  W  S  L  V  R  S  Q  P  R  L  L  *  T  M  R  R  L  C  V  T  H  A  V  I  L  D  L  F  L  M  M  L  V  L  M  L  T  T  A  R  S  L  F  T  L  S  S  K  V  L  I  L  L  K  V  S  T  A  I  *  P  N  A  P  R  R  L  V  L  V  T  R  A  T  C  L  A  M  Q  Q  M  R  P  L  N  *  C  L  S  V  T  C  L  Q  L  N  L  V  P  V  L  Q  K  S  A  R  M  A  P  A  P  G  *  G  L  M  A  R  P  K  L  L :   F  L  S  P  P  N  T  M  R  P  L  P  M  M  R  L  P  A  T  L  R  S  M  S  S  N  Q  S  S  Q  R </second_frame>
            <third_frame>   K  H  L  A  N  Q  K  Y  K  E  V  I  S  L  K  G  *  K  D  C  P  F  S  T  F  I  I  L  F  F  S  L  F  A  V  G  F  F  T  F  L  F  L  E  :  N  G  N  F  L  I  H  L  R  V  C  E  R  G  S  P  R  Q  A  L  *  S  D  L  *  C  S  S  *  C  L  P  *  A  R  S  R  E  Q  S  C  M  *  N  L  H  Q  D  Q  L  G  H  G  L  W  *  D  H  N  Q  G  Y  C  R  L  *  E  D  C  A  *  H  M  P  *  Y  W  I  C  F  *  *  C  W  S  *  C  *  Q  L  Q  G  P  C  L  H  *  A  A  K  S  *  Y  C  S  R  C  P  R  P  S  D  Q  T  P  R  G  D  W  C  W  *  P  G  P  H  V  W  L  C  N  R  *  D  P  *  I  N  A  S  Q  S  R  A  C  N  *  T  W  C  P  S  Y  R  S  P  Q  E  W  H  L  R  L  V  E  A  *  W  Q  D  P  S  Y   : C  S  Y  L  H  P  T  R  *  D  R  Y  Q  *  *  D  C  P  R  P  *  G  A  C  H  Q  T  S  H  P  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97110" stop="97162"/>
                    <exon start="98108" stop="98627"/>
                    <exon start="98679" stop="98771"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFSLCSPLGSSLSCFLRMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVLISTQHDETVTNDEIARDLKEHVIKPVIPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97045" e_stop="97740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97045" e_stop="97740" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97045" stop="97740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97137" stop="97507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAATACAAAGAGGTTATTTCTCTCAAGGGGTAAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAGGTAATTTTAAGTTTAGCTAGTTGAATACTAGTCTTTTTCTGTTTCTTTCATCGGGTTTTGCTGTTTTCTTGCTGGGTGTTTTATGATAGATCTGGGGTTTTTGTGCAAAATTTCTTTTGGGGTTTTTGAAGTGATGAAAGATTGTGTTTTTATTTGGTTTGTTTAGGGTTGGTTGTGTTTTAGCTTGAGTGTTGGGAACAGGGGAGGGAAGGAACAGTTTCTTGAATCTGGAAATGAACTAATTTTTCCTGTTAATTTGTCTTTCCATGAAAATTTTGAAATGCTTCTGTATTTTTGCTCTTAAAAAACCCTGCTTTATACTGAAAACTTTGATGTTCTCAACATGTTTGTTTTTTTGTAAAATTATTTTTGTGTGTTCTGGGTGATCTTTGTTTCTTTGTATCATGATTATAAATTACAGTATGTGTTGTTTTTCAAAATTACGTAGAGATTAGAAGTAGTTGATTGGTATGGTGGAGGTTTTGTCTTGTAAGAGATCAGCTAGATCTAGTGCAAATATGCTTTTGCCAACTTTGGAGTAGAAGATTCTAGCTTAACTCTATTGTGTTTTTAAAAGT</gDNA_template>
            <first_frame> P  K  I  Q  R  G  Y  F  S  Q  G  V  K  R  L  P  L  F  D  I  Y  N  P  L  F  L  F  V  R  R  W  V  L  H  F  P  V  S  *  G  N  F  K  F  S  *  L  N  T  S  L  F  L  F  L  S  S  G  F  A  V  F  L  L  G  V  L  *  *  I  W  G  F  C  A  K  F  L  L  G  F  L  K  *  *  K  I  V  F  L  F  G  L  F  R  V  G  C  V  L  A  *  V  L  G  T  G  E  G  R  N  S  F  L  N  L  E  M  N  *  F  F  L  L  I  C  L  S  M  K  I  L  K  C  F  C  I  F  A  L  K  K  P  C  F  I  L  K  T  L  M  F  S  T  C  L  F  F  C  K  I  I  F  V  C  S  G  *  S  L  F  L  C  I  M  I  I  N  Y  S  M  C  C  F  S  K  L  R  R  D  *  K  *  L  I  G  M  V  E  V  L  S  C  K  R  S  A  R  S  S  A  N  M  L  L  P  T  L  E  *  K  I  L  A  *  L  Y  C  V  F  K  S </first_frame>
            <second_frame>  Q  K  Y  K  E  V  I  S  L  K  G  *  K  D  C  P  F  S  T  F  I  I  L  F  F  S  L  F  A  V  G  F  F  T  F  L  F  L  E  V  I  L  S  L  A  S  *  I  L  V  F  F  C  F  F  H  R  V  L  L  F  S  C  W  V  F  Y  D  R  S  G  V  F  V  Q  N  F  F  W  G  F  *  S  D  E  R  L  C  F  Y  L  V  C  L  G  L  V  V  F  *  L  E  C  W  E  Q  G  R  E  G  T  V  S  *  I  W  K  *  T  N  F  S  C  *  F  V  F  P  *  K  F  *  N  A  S  V  F  L  L  L  K  N  P  A  L  Y  *  K  L  *  C  S  Q  H  V  C  F  F  V  K  L  F  L  C  V  L  G  D  L  C  F  F  V  S  *  L  *  I  T  V  C  V  V  F  Q  N  Y  V  E  I  R  S  S  *  L  V  W  W  R  F  C  L  V  R  D  Q  L  D  L  V  Q  I  C  F  C  Q  L  W  S  R  R  F  *  L  N  S  I  V  F  L  K   </second_frame>
            <third_frame>   K  N  T  K  R  L  F  L  S  R  G  K  K  I  A  P  F  R  H  L  *  S  S  F  S  L  C  S  P  L  G  S  S  L  S  C  F  L  R  *  F  *  V  *  L  V  E  Y  *  S  F  S  V  S  F  I  G  F  C  C  F  L  A  G  C  F  M  I  D  L  G  F  L  C  K  I  S  F  G  V  F  E  V  M  K  D  C  V  F  I  W  F  V  *  G  W  L  C  F  S  L  S  V  G  N  R  G  G  K  E  Q  F  L  E  S  G  N  E  L  I  F  P  V  N  L  S  F  H  E  N  F  E  M  L  L  Y  F  C  S  *  K  T  L  L  Y  T  E  N  F  D  V  L  N  M  F  V  F  L  *  N  Y  F  C  V  F  W  V  I  F  V  S  L  Y  H  D  Y  K  L  Q  Y  V  L  F  F  K  I  T  *  R  L  E  V  V  D  W  Y  G  G  G  F  V  L  *  E  I  S  *  I  *  C  K  Y  A  F  A  N  F  G  V  E  D  S  S  L  T  L  L  C  F  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0001H15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97080" e_stop="97162"/>
            <exon e_start="97746" e_stop="97827"/>
            <exon e_start="98108" e_stop="98415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.472" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="97080" e_stop="97162" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97163" i_stop="97745" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97746" e_stop="97827" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.472" acc_prob="0.997">
            <gDNA_intron_boundary i_start="97828" i_stop="98107" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98108" e_stop="98415" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97080" stop="97162"/>
              <exon start="97746" stop="97827"/>
              <exon start="98108" stop="98415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592482" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGATTGCCCCTTTTCGACATTTATAATCCTCTTTTTCTCTTTGTTCGCCGTTGGGTTCTTCACTTTCCTGTTTCTTGAG : ATCCTTGTCAAAATTGGTGGTCCAGCTTGATATTTTATAGGTAAAAAGAGATTTCATTGGGCCTTTTCTTTAATTTTGTCAG : AATGGAAACTTTCTTATTCACCTCCGAGTCTGTGAACGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGATGCCTGCCTTGAGCAAGATCCCGAGAGCAAAGTTGCATGTGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACACATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGATA</gDNA_template>
            <first_frame> K  K  I  A  P  F  R  H  L  *  S  S  F  S  L  C  S  P  L  G  S  S  L  S  C  F  L  R :   S  L  S  K  L  V  V  Q  L  D  I  L  *  V  K  R  D  F  I  G  P  F  L  *  F  C  Q  :  N  G  N  F  L  I  H  L  R  V  C  E  R  G  S  P  R  Q  A  L  *  S  D  L  *  C  S  S  *  C  L  P  *  A  R  S  R  E  Q  S  C  M  *  N  L  H  Q  D  Q  L  G  H  G  L  W  *  D  H  N  Q  G  Y  C  R  L  *  E  D  C  A  *  H  M  P  *  Y  W  I  C  F  *  *  C  W  S  *  C  *  Q  L  Q  G  P  C  L  H  *  A  A  K  S  *   </first_frame>
            <second_frame>  K  R  L  P  L  F  D  I  Y  N  P  L  F  L  F  V  R  R  W  V  L  H  F  P  V  S  *   : D  P  C  Q  N  W  W  S  S  L  I  F  Y  R  *  K  E  I  S  L  G  L  F  F  N  F  V  R :   M  E  T  F  L  F  T  S  E  S  V  N  E  G  H  P  D  K  L  C  D  Q  I  S  D  A  V  L  D  A  C  L  E  Q  D  P  E  S  K  V  A  C  E  T  C  T  K  T  N  L  V  M  V  F  G  E  I  T  T  K  A  I  V  D  Y  E  K  I  V  R  D  T  C  R  N  I  G  F  V  S  D  D  V  G  L  D  A  D  N  C  K  V  L  V  Y  I  E  Q  Q  S  P  D  </second_frame>
            <third_frame>   K  D  C  P  F  S  T  F  I  I  L  F  F  S  L  F  A  V  G  F  F  T  F  L  F  L  E  :  I  L  V  K  I  G  G  P  A  *  Y  F  I  G  K  K  R  F  H  W  A  F  S  L  I  L  S   : E  W  K  L  S  Y  S  P  P  S  L  *  T  R  V  T  Q  T  S  S  V  I  R  S  L  M  Q  F  L  M  P  A  L  S  K  I  P  R  A  K  L  H  V  K  L  A  P  R  P  T  W  S  W  S  L  V  R  S  Q  P  R  L  L  *  T  M  R  R  L  C  V  T  H  A  V  I  L  D  L  F  L  M  M  L  V  L  M  L  T  T  A  R  S  L  F  T  L  S  S  K  V  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97790" stop="97827"/>
                    <exon start="98108" stop="98414"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEISLGLFFNFVRMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="99518" PGL_stop="98950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99518" e_stop="98950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="99518" e_stop="98950" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99518" stop="98950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAAAGAAAATCATTCCACAAATGCACTAATTTTCAAGTATATAATAATATTTCTTTTTCTTTCCTTAATATTCCAAGGCCTAAGATATCCATCCAACACAATGGAAACAGGACAATAACAAAATAAAGGGTCAAAAGAGAAAATACAAAGACAAACAAGCAAACACGGGGGAGATTCTAAAGCCACAAGCAAACAACAAAGAACAAAAACATAGGCAAGCACTTATTAGTCTTGGGGCTTTTCCCACTTGAGGGGCTTGACAACTTCCCATGTGAAATCGGGGTCATCACGTCCAAAGTGACCATAGGCAGCAGTTTTCAAGAATCTTCTATTGCCACCCCTCTTCAAATCCAAGTTAATGGACATCATTCCAGGTCTGAAGTCAAAGTTCTCCTTAACGATCTTCAAAATTTCCCTGTCAGGGATCTTTCCAGTGCCATAGGTGTCAACGAATACAGACAATGGCTCAGGCACACCGATGGCATAAGATACCTGCACGATGCATCTACGAGCAAGTCCACTAGCTACGATACTCTTTGCAGCCTGCCTTACAATGTATGCACCAC</gDNA_template>
            <first_frame> Q  *  R  K  S  F  H  K  C  T  N  F  Q  V  Y  N  N  I  S  F  S  F  L  N  I  P  R  P  K  I  S  I  Q  H  N  G  N  R  T  I  T  K  *  R  V  K  R  E  N  T  K  T  N  K  Q  T  R  G  R  F  *  S  H  K  Q  T  T  K  N  K  N  I  G  K  H  L  L  V  L  G  L  F  P  L  E  G  L  D  N  F  P  C  E  I  G  V  I  T  S  K  V  T  I  G  S  S  F  Q  E  S  S  I  A  T  P  L  Q  I  Q  V  N  G  H  H  S  R  S  E  V  K  V  L  L  N  D  L  Q  N  F  P  V  R  D  L  S  S  A  I  G  V  N  E  Y  R  Q  W  L  R  H  T  D  G  I  R  Y  L  H  D  A  S  T  S  K  S  T  S  Y  D  T  L  C  S  L  P  Y  N  V  C  T   </first_frame>
            <second_frame>  N  K  E  N  H  S  T  N  A  L  I  F  K  Y  I  I  I  F  L  F  L  S  L  I  F  Q  G  L  R  Y  P  S  N  T  M  E  T  G  Q  *  Q  N  K  G  S  K  E  K  I  Q  R  Q  T  S  K  H  G  G  D  S  K  A  T  S  K  Q  Q  R  T  K  T  *  A  S  T  Y  *  S  W  G  F  S  H  L  R  G  L  T  T  S  H  V  K  S  G  S  S  R  P  K  *  P  *  A  A  V  F  K  N  L  L  L  P  P  L  F  K  S  K  L  M  D  I  I  P  G  L  K  S  K  F  S  L  T  I  F  K  I  S  L  S  G  I  F  P  V  P  *  V  S  T  N  T  D  N  G  S  G  T  P  M  A  *  D  T  C  T  M  H  L  R  A  S  P  L  A  T  I  L  F  A  A  C  L  T  M  Y  A  P  </second_frame>
            <third_frame>   I  K  K  I  I  P  Q  M  H  *  F  S  S  I  *  *  Y  F  F  F  F  P  *  Y  S  K  A  *  D  I  H  P  T  Q  W  K  Q  D  N  N  K  I  K  G  Q  K  R  K  Y  K  D  K  Q  A  N  T  G  E  I  L  K  P  Q  A  N  N  K  E  Q  K  H  R  Q  A  L  I  S  L  G  A  F  P  T  *  G  A  *  Q  L  P  M  *  N  R  G  H  H  V  Q  S  D  H  R  Q  Q  F  S  R  I  F  Y  C  H  P  S  S  N  P  S  *  W  T  S  F  Q  V  *  S  Q  S  S  P  *  R  S  S  K  F  P  C  Q  G  S  F  Q  C  H  R  C  Q  R  I  Q  T  M  A  Q  A  H  R  W  H  K  I  P  A  R  C  I  Y  E  Q  V  H  *  L  R  Y  S  L  Q  P  A  L  Q  C  M  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99335" stop="98952"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHKQTTKNKNIGKHLLVLGLFPLEGLDNFPCEIGVITSKVTIGSSFQESSIATPLQIQVNGHHSRSEVKVLLNDLQNFPVRDLSSAIGVNEYRQWLRHTDGIRYLHDASTSKSTSYDTLCSLPYNVCT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="98992" PGL_stop="99489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98992" e_stop="99489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="98992" e_stop="99489" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98992" stop="99489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGTGGACTTGCTCGTAGATGCATCGTGCAGGTATCTTATGCCATCGGTGTGCCTGAGCCATTGTCTGTATTCGTTGACACCTATGGCACTGGAAAGATCCCTGACAGGGAAATTTTGAAGATCGTTAAGGAGAACTTTGACTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATAGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGGACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGCTTGCCTATGTTTTTGTTCTTTGTTGTTTGCTTGTGGCTTTAGAATCTCCCCCGTGTTTGCTTGTTTGTCTTTGTATTTTCTCTTTTGACCCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGATGGATATCTTAGGCCTTGGAATATTAAGGAAAGAAAAAGAAATATTATTATATACTTGAAAATTA</gDNA_template>
            <first_frame> L  V  D  L  L  V  D  A  S  C  R  Y  L  M  P  S  V  C  L  S  H  C  L  Y  S  L  T  P  M  A  L  E  R  S  L  T  G  K  F  *  R  S  L  R  R  T  L  T  S  D  L  E  *  C  P  L  T  W  I  *  R  G  V  A  I  E  D  S  *  K  L  L  P  M  V  T  L  D  V  M  T  P  I  S  H  G  K  L  S  S  P  S  S  G  K  S  P  K  T  N  K  C  L  P  M  F  L  F  F  V  V  C  L  W  L  *  N  L  P  R  V  C  L  F  V  F  V  F  S  L  L  T  L  Y  F  V  I  V  L  F  P  L  C  W  M  D  I  L  G  L  G  I  L  R  K  E  K  E  I  L  L  Y  T  *  K  L </first_frame>
            <second_frame>  *  W  T  C  S  *  M  H  R  A  G  I  L  C  H  R  C  A  *  A  I  V  C  I  R  *  H  L  W  H  W  K  D  P  *  Q  G  N  F  E  D  R  *  G  E  L  *  L  Q  T  W  N  D  V  H  *  L  G  F  E  E  G  W  Q  *  K  I  L  E  N  C  C  L  W  S  L  W  T  *  *  P  R  F  H  M  G  S  C  Q  A  P  Q  V  G  K  A  P  R  L  I  S  A  C  L  C  F  C  S  L  L  F  A  C  G  F  R  I  S  P  V  F  A  C  L  S  L  Y  F  L  F  *  P  F  I  L  L  L  S  C  F  H  C  V  G  W  I  S  *  A  L  E  Y  *  G  K  K  K  K  Y  Y  Y  I  L  E  N   </second_frame>
            <third_frame>   S  G  L  A  R  R  C  I  V  Q  V  S  Y  A  I  G  V  P  E  P  L  S  V  F  V  D  T  Y  G  T  G  K  I  P  D  R  E  I  L  K  I  V  K  E  N  F  D  F  R  P  G  M  M  S  I  N  L  D  L  K  R  G  G  N  R  R  F  L  K  T  A  A  Y  G  H  F  G  R  D  D  P  D  F  T  W  E  V  V  K  P  L  K  W  E  K  P  Q  D  *  *  V  L  A  Y  V  F  V  L  C  C  L  L  V  A  L  E  S  P  P  C  L  L  V  C  L  C  I  F  S  F  D  P  L  F  C  Y  C  P  V  S  I  V  L  D  G  Y  L  R  P  W  N  I  K  E  R  K  R  N  I  I  I  Y  L  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98994" stop="99290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99294" stop="99488"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAYVFVLCCLLVALESPPCLLVCLCIFSFDPLFCYCPVSIVLDGYLRPWNIKERKRNIIIYLKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="103245" PGL_stop="100417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103245" e_stop="103197"/>
            <exon e_start="103097" e_stop="102807"/>
            <exon e_start="102648" e_stop="102565"/>
            <exon e_start="102466" e_stop="102333"/>
            <exon e_start="102204" e_stop="101977"/>
            <exon e_start="101544" e_stop="101373"/>
            <exon e_start="101238" e_stop="100984"/>
            <exon e_start="100863" e_stop="100417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.353" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="0.994"/>
          <exon-intron don_prob="0.879" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103245" e_stop="103197" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.353" acc_prob="0.769">
            <gDNA_intron_boundary i_start="103196" i_stop="103098" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103097" e_stop="102807" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102806" i_stop="102649" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102648" e_stop="102565" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.955">
            <gDNA_intron_boundary i_start="102564" i_stop="102467" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102466" e_stop="102333" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102332" i_stop="102205" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102204" e_stop="101977" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.987">
            <gDNA_intron_boundary i_start="101976" i_stop="101545" i_length="432"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="101544" e_stop="101373" e_length="172"/>
          </exon>
          <intron i_serial="6" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="101372" i_stop="101239" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101238" e_stop="100984" e_length="255"/>
          </exon>
          <intron i_serial="7" don_prob="0.879" acc_prob="0.812">
            <gDNA_intron_boundary i_start="100983" i_stop="100864" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="100863" e_stop="100417" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103245" stop="103197"/>
              <exon start="103097" stop="102807"/>
              <exon start="102648" stop="102565"/>
              <exon start="102466" stop="102333"/>
              <exon start="102204" stop="101977"/>
              <exon start="101544" stop="101373"/>
              <exon start="101238" stop="100984"/>
              <exon start="100863" stop="100417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGCTTGGCTACGACTTCATCCTCAGATTGATTCCAGAACGAAATAT : GAGTTTGTGAAAGAAGTCCTCGAGACCATTGAGCTAGATGGTATAAAAGACACGTTGGTTGGTATGCCGGGTGTTAGTGGGCTTTCAACAGAACAACGTAAACGGCTGACAATCGCTGTGGAGCTTGTTGCAAATCCCTCAATTATCTTTATGGATGAACCCACAACAGGGTTGGACGCAAGGTCAGCTGCAATTGTCATGCGGGCTGTGAAAAATGTTGCTGATACAGGAAGAACAATAGTTTGTACCATCCACCAACCAAGCATTGACATATTTGAAGCATTTGATGAG : CTGATTCTATTGAAAAGTGGTGGGCGCATGATCTACTGGGGACCACTCGGACGAAATTCTTGTAAAATGATCGAATATTTTGAG : GGTATCTCTGGTGTGCCTAAAATAAAGAACAACTACAATCCAGCAACATGGATGTTAGAGGTTACATCAACATCTAGTGAAGCTGAGACCAGCATAGACTTCGCTGAAGTATATAAGAATTCTGCTCTACACAA : AAATAACGAAGAGCTTGTGAAAAAACTGACTTTCCCACCAGCTGGTTCAAAAGATTTGCATTTCCCCACCCAATTTTCACAGAATGGCTGGGGACAATTCAAGACTTGCTTCTGGAAGCAATACTGGTCCTATTGGAGGAGTCCTTCATACAATTTGATGCGCTCTCTGCACATGCTTTTTGCTTCCGTTGTTTTTGGATTGCTTTTCTGGAACAAGGGAAAGAAACT : AGATGACCAGCAGAGTGTCTTCAGTGTATTTGGTTCTATGTTCACTGCAGTAATCTTCTGTGGCATAAATAATTCATCTTCAGTTTTACCATATGTGACCACGGAGCGATCAGTCCTATACCGGGAAAGATTTGCTGGAATGTATGCATCATGGGCTTATGCATTAGCACAG : GTGGCAATTGAAATTCCGTATCTTTTAGCTCAAGCACTTTCATTTACTGTCATCACCTATTCGATGATTGGATATTATTGGTCGGCCCACAAGGTTTTGTGGTACTTCTATTCGATGTTCTGCACATTGTTGTACTTCACATACTTGGGAATGATGCTTGTTTCATTGACACCAAACTTGCCAGTAGCTGCAATTCTCCAGTCATCCTTTTACACAATGTTCAACCTCTTTGCCGGATTCTTGATACCAAAAGCT : CAAATTCCAAAATGGTGGATCTGGTTCTATTATCTAGTACCTACATCGTGGACGTTGAATGGGATGCTTACTTCACAATATGGAGATGTTGATACAGAGATTACTGTGTTTGGAGATAAGAAATCAGTAGCAGCCTTTATTAGGGACTATTTTGGATTTCACCACAATCAATTACCTATTGTAGGTGTTGTTTTGATTGCATACCCCTTAGTTTTTGCCACTTTATTTGCATTTTTCATTGGGAGGTTGAACTTCCAAAGAAGGTGATGCTGCAACTTATTCATTTGTTGTTTATAGAAACTTTTGATATATTATCCAAATTAAATACTTCCCCTCCTCCTTTTGTACATTAGACTGGTGAGATTTTATTGGTAAATAAAAAAGACAAACAGTGTGTTACATCATTTAATATGAAGGAAATATGAAAAAAGAAAAATACAATTATTT</gDNA_template>
            <first_frame> F  C  L  A  T  T  S  S  S  D  *  F  Q  N  E  I   : *  V  C  E  R  S  P  R  D  H  *  A  R  W  Y  K  R  H  V  G  W  Y  A  G  C  *  W  A  F  N  R  T  T  *  T  A  D  N  R  C  G  A  C  C  K  S  L  N  Y  L  Y  G  *  T  H  N  R  V  G  R  K  V  S  C  N  C  H  A  G  C  E  K  C  C  *  Y  R  K  N  N  S  L  Y  H  P  P  T  K  H  *  H  I  *  S  I  *  *   : A  D  S  I  E  K  W  W  A  H  D  L  L  G  T  T  R  T  K  F  L  *  N  D  R  I  F  *   : G  Y  L  W  C  A  *  N  K  E  Q  L  Q  S  S  N  M  D  V  R  G  Y  I  N  I  *  *  S  *  D  Q  H  R  L  R  *  S  I  *  E  F  C  S  T  Q  :  K  *  R  R  A  C  E  K  T  D  F  P  T  S  W  F  K  R  F  A  F  P  H  P  I  F  T  E  W  L  G  T  I  Q  D  L  L  L  E  A  I  L  V  L  L  E  E  S  F  I  Q  F  D  A  L  S  A  H  A  F  C  F  R  C  F  W  I  A  F  L  E  Q  G  K  E  T  :  R  *  P  A  E  C  L  Q  C  I  W  F  Y  V  H  C  S  N  L  L  W  H  K  *  F  I  F  S  F  T  I  C  D  H  G  A  I  S  P  I  P  G  K  I  C  W  N  V  C  I  M  G  L  C  I  S  T   : G  G  N  *  N  S  V  S  F  S  S  S  T  F  I  Y  C  H  H  L  F  D  D  W  I  L  L  V  G  P  Q  G  F  V  V  L  L  F  D  V  L  H  I  V  V  L  H  I  L  G  N  D  A  C  F  I  D  T  K  L  A  S  S  C  N  S  P  V  I  L  L  H  N  V  Q  P  L  C  R  I  L  D  T  K  S   : S  N  S  K  M  V  D  L  V  L  L  S  S  T  Y  I  V  D  V  E  W  D  A  Y  F  T  I  W  R  C  *  Y  R  D  Y  C  V  W  R  *  E  I  S  S  S  L  Y  *  G  L  F  W  I  S  P  Q  S  I  T  Y  C  R  C  C  F  D  C  I  P  L  S  F  C  H  F  I  C  I  F  H  W  E  V  E  L  P  K  K  V  M  L  Q  L  I  H  L  L  F  I  E  T  F  D  I  L  S  K  L  N  T  S  P  P  P  F  V  H  *  T  G  E  I  L  L  V  N  K  K  D  K  Q  C  V  T  S  F  N  M  K  E  I  *  K  K  K  N  T  I  I  </first_frame>
            <second_frame>  S  A  W  L  R  L  H  P  Q  I  D  S  R  T  K  Y  :  E  F  V  K  E  V  L  E  T  I  E  L  D  G  I  K  D  T  L  V  G  M  P  G  V  S  G  L  S  T  E  Q  R  K  R  L  T  I  A  V  E  L  V  A  N  P  S  I  I  F  M  D  E  P  T  T  G  L  D  A  R  S  A  A  I  V  M  R  A  V  K  N  V  A  D  T  G  R  T  I  V  C  T  I  H  Q  P  S  I  D  I  F  E  A  F  D  E  :  L  I  L  L  K  S  G  G  R  M  I  Y  W  G  P  L  G  R  N  S  C  K  M  I  E  Y  F  E  :  G  I  S  G  V  P  K  I  K  N  N  Y  N  P  A  T  W  M  L  E  V  T  S  T  S  S  E  A  E  T  S  I  D  F  A  E  V  Y  K  N  S  A  L  H  K :   N  N  E  E  L  V  K  K  L  T  F  P  P  A  G  S  K  D  L  H  F  P  T  Q  F  S  Q  N  G  W  G  Q  F  K  T  C  F  W  K  Q  Y  W  S  Y  W  R  S  P  S  Y  N  L  M  R  S  L  H  M  L  F  A  S  V  V  F  G  L  L  F  W  N  K  G  K  K  L :   D  D  Q  Q  S  V  F  S  V  F  G  S  M  F  T  A  V  I  F  C  G  I  N  N  S  S  S  V  L  P  Y  V  T  T  E  R  S  V  L  Y  R  E  R  F  A  G  M  Y  A  S  W  A  Y  A  L  A  Q  :  V  A  I  E  I  P  Y  L  L  A  Q  A  L  S  F  T  V  I  T  Y  S  M  I  G  Y  Y  W  S  A  H  K  V  L  W  Y  F  Y  S  M  F  C  T  L  L  Y  F  T  Y  L  G  M  M  L  V  S  L  T  P  N  L  P  V  A  A  I  L  Q  S  S  F  Y  T  M  F  N  L  F  A  G  F  L  I  P  K  A  :  Q  I  P  K  W  W  I  W  F  Y  Y  L  V  P  T  S  W  T  L  N  G  M  L  T  S  Q  Y  G  D  V  D  T  E  I  T  V  F  G  D  K  K  S  V  A  A  F  I  R  D  Y  F  G  F  H  H  N  Q  L  P  I  V  G  V  V  L  I  A  Y  P  L  V  F  A  T  L  F  A  F  F  I  G  R  L  N  F  Q  R  R  *  C  C  N  L  F  I  C  C  L  *  K  L  L  I  Y  Y  P  N  *  I  L  P  L  L  L  L  Y  I  R  L  V  R  F  Y  W  *  I  K  K  T  N  S  V  L  H  H  L  I  *  R  K  Y  E  K  R  K  I  Q  L  F </second_frame>
            <third_frame>   L  L  G  Y  D  F  I  L  R  L  I  P  E  R  N  M :   S  L  *  K  K  S  S  R  P  L  S  *  M  V  *  K  T  R  W  L  V  C  R  V  L  V  G  F  Q  Q  N  N  V  N  G  *  Q  S  L  W  S  L  L  Q  I  P  Q  L  S  L  W  M  N  P  Q  Q  G  W  T  Q  G  Q  L  Q  L  S  C  G  L  *  K  M  L  L  I  Q  E  E  Q  *  F  V  P  S  T  N  Q  A  L  T  Y  L  K  H  L  M  S :   *  F  Y  *  K  V  V  G  A  *  S  T  G  D  H  S  D  E  I  L  V  K  *  S  N  I  L  R :   V  S  L  V  C  L  K  *  R  T  T  T  I  Q  Q  H  G  C  *  R  L  H  Q  H  L  V  K  L  R  P  A  *  T  S  L  K  Y  I  R  I  L  L  Y  T   : K  I  T  K  S  L  *  K  N  *  L  S  H  Q  L  V  Q  K  I  C  I  S  P  P  N  F  H  R  M  A  G  D  N  S  R  L  A  S  G  S  N  T  G  P  I  G  G  V  L  H  T  I  *  C  A  L  C  T  C  F  L  L  P  L  F  L  D  C  F  S  G  T  R  E  R  N   : *  M  T  S  R  V  S  S  V  Y  L  V  L  C  S  L  Q  *  S  S  V  A  *  I  I  H  L  Q  F  Y  H  M  *  P  R  S  D  Q  S  Y  T  G  K  D  L  L  E  C  M  H  H  G  L  M  H  *  H  R :   W  Q  L  K  F  R  I  F  *  L  K  H  F  H  L  L  S  S  P  I  R  *  L  D  I  I  G  R  P  T  R  F  C  G  T  S  I  R  C  S  A  H  C  C  T  S  H  T  W  E  *  C  L  F  H  *  H  Q  T  C  Q  *  L  Q  F  S  S  H  P  F  T  Q  C  S  T  S  L  P  D  S  *  Y  Q  K  L :   K  F  Q  N  G  G  S  G  S  I  I  *  Y  L  H  R  G  R  *  M  G  C  L  L  H  N  M  E  M  L  I  Q  R  L  L  C  L  E  I  R  N  Q  *  Q  P  L  L  G  T  I  L  D  F  T  T  I  N  Y  L  L  *  V  L  F  *  L  H  T  P  *  F  L  P  L  Y  L  H  F  S  L  G  G  *  T  S  K  E  G  D  A  A  T  Y  S  F  V  V  Y  R  N  F  *  Y  I  I  Q  I  K  Y  F  P  S  S  F  C  T  L  D  W  *  D  F  I  G  K  *  K  R  Q  T  V  C  Y  I  I  *  Y  E  G  N  M  K  K  E  K  Y  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103244" stop="103197"/>
                    <exon start="103097" stop="102807"/>
                    <exon start="102648" stop="102565"/>
                    <exon start="102466" stop="102333"/>
                    <exon start="102204" stop="101977"/>
                    <exon start="101544" stop="101373"/>
                    <exon start="101238" stop="100984"/>
                    <exon start="100863" stop="100597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1476</number_coding_nucleotides>
                  <number_encoded_amino_acids>492</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAWLRLHPQIDSRTKYEFVKEVLETIELDGIKDTLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKSGGRMIYWGPLGRNSCKMIEYFEGISGVPKIKNNYNPATWMLEVTSTSSEAETSIDFAEVYKNSALHKNNEELVKKLTFPPAGSKDLHFPTQFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRSLHMLFASVVFGLLFWNKGKKLDDQQSVFSVFGSMFTAVIFCGINNSSSVLPYVTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALSFTVITYSMIGYYWSAHKVLWYFYSMFCTLLYFTYLGMMLVSLTPNLPVAAILQSSFYTMFNLFAGFLIPKAQIPKWWIWFYYLVPTSWTLNGMLTSQYGDVDTEITVFGDKKSVAAFIRDYFGFHHNQLPIVGVVLIAYPLVFATLFAFFIGRLNFQRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="106319" PGL_stop="105677"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106319" e_stop="106302"/>
            <exon e_start="106223" e_stop="105942"/>
            <exon e_start="105791" e_stop="105677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.668" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106319" e_stop="106302" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.668" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106301" i_stop="106224" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106223" e_stop="105942" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.931">
            <gDNA_intron_boundary i_start="105941" i_stop="105792" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105791" e_stop="105677" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106319" stop="106302"/>
              <exon start="106223" stop="105942"/>
              <exon start="105791" stop="105677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGACTTCCTCCAGGAG : GTTACGTCGAAAAAGGATCAAGCACAGTATTGGCATGAAACTAAAGAAACATATAAATTTCTGTCAGTTGATACATTATCAAGAAAGTTTAAGGAATCTCCATACAGGAAAAAGCTGAATGATGAACTTTCTGTTGCATATGATAAGTCCAGGTGTCATAAAAATTCTATAACCTTTCGTGACTATTCACTTCCTAAATGGGAACTCTTTCGAGCTTGTATGTCAAGAGAATTCCTTCTGATGAAAAGGAATTCTTTTATCTACATATTCAAAACTGTTCAG : CTTGTCATCATTGCATTCATAACTATGACCGTATTTTTGAGAACTCGGATGCATACTGATCTTGTACATGCAAATTATTATTTGGGAGCTCTGTTTTTTGCTCTCATCATTCTTC</gDNA_template>
            <first_frame> A  D  F  L  Q  E  :  V  T  S  K  K  D  Q  A  Q  Y  W  H  E  T  K  E  T  Y  K  F  L  S  V  D  T  L  S  R  K  F  K  E  S  P  Y  R  K  K  L  N  D  E  L  S  V  A  Y  D  K  S  R  C  H  K  N  S  I  T  F  R  D  Y  S  L  P  K  W  E  L  F  R  A  C  M  S  R  E  F  L  L  M  K  R  N  S  F  I  Y  I  F  K  T  V  Q  :  L  V  I  I  A  F  I  T  M  T  V  F  L  R  T  R  M  H  T  D  L  V  H  A  N  Y  Y  L  G  A  L  F  F  A  L  I  I  L  </first_frame>
            <second_frame>  L  T  S  S  R  R :   L  R  R  K  R  I  K  H  S  I  G  M  K  L  K  K  H  I  N  F  C  Q  L  I  H  Y  Q  E  S  L  R  N  L  H  T  G  K  S  *  M  M  N  F  L  L  H  M  I  S  P  G  V  I  K  I  L  *  P  F  V  T  I  H  F  L  N  G  N  S  F  E  L  V  C  Q  E  N  S  F  *  *  K  G  I  L  L  S  T  Y  S  K  L  F  S :   L  S  S  L  H  S  *  L  *  P  Y  F  *  E  L  G  C  I  L  I  L  Y  M  Q  I  I  I  W  E  L  C  F  L  L  S  S  F  F </second_frame>
            <third_frame>   *  L  P  P  G   : G  Y  V  E  K  G  S  S  T  V  L  A  *  N  *  R  N  I  *  I  S  V  S  *  Y  I  I  K  K  V  *  G  I  S  I  Q  E  K  A  E  *  *  T  F  C  C  I  *  *  V  Q  V  S  *  K  F  Y  N  L  S  *  L  F  T  S  *  M  G  T  L  S  S  L  Y  V  K  R  I  P  S  D  E  K  E  F  F  Y  L  H  I  Q  N  C  S   : A  C  H  H  C  I  H  N  Y  D  R  I  F  E  N  S  D  A  Y  *  S  C  T  C  K  L  L  F  G  S  S  V  F  C  S  H  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106319" stop="106302"/>
                    <exon start="106223" stop="105942"/>
                    <exon start="105791" stop="105678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADFLQEVTSKKDQAQYWHETKETYKFLSVDTLSRKFKESPYRKKLNDELSVAYDKSRCHKNSITFRDYSLPKWELFRACMSREFLLMKRNSFIYIFKTVQLVIIAFITMTVFLRTRMHTDLVHANYYLGALFFALIIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="110211" PGL_stop="107373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110211" e_stop="109834"/>
            <exon e_start="109613" e_stop="109490"/>
            <exon e_start="109006" e_stop="108921"/>
            <exon e_start="108022" e_stop="107938"/>
            <exon e_start="107436" e_stop="107373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.413" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.949" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.936" acc_prob="0.284" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110211" e_stop="109834" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.413">
            <gDNA_intron_boundary i_start="109833" i_stop="109614" i_length="220"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="109613" e_stop="109490" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="109489" i_stop="109007" i_length="483"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="109006" e_stop="108921" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.993">
            <gDNA_intron_boundary i_start="108920" i_stop="108023" i_length="898"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108022" e_stop="107938" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.284">
            <gDNA_intron_boundary i_start="107937" i_stop="107437" i_length="501"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="107436" e_stop="107373" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110211" stop="109834"/>
              <exon start="109613" stop="109490"/>
              <exon start="109006" stop="108921"/>
              <exon start="108022" stop="107938"/>
              <exon start="107436" stop="107373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGTTAGTTCGGACGATATAGAGTCGATTAGAATGGATCTCTCAGAGATTGGAAGAAGCTTTAGATCATCATTTAGGCGCCAGACTTCGATTTTGAGGAGTAATTCAGCTTTGAGTGCTTCTGAAAAGGACGACGTTGTGGATGAGGAGAACATGTTGGCTTGGGCAGCAATTGAGAGACTGCCAACGTATGACAGGTTGAGATCATCTGTATTTGAGGAAGTCAATGGCAATGAGGCCAATGTTAAGACGAAAAGAGTAACTGATGTTACCAAGCTTGGAGCTGTAGAAAGGCATGTTTTCATTGAAAAGATGATTAAACACATTGAACATGACAACCTTCAATTGTTGCACAAAATCAGAAAGAGAATTGACAA : AGTTGGTGTAAAATTGCCTACTGTGGAAGTGAGATACAAAAATTTAACCATTGAAGCAGAATGTGAGCTAGTTCATGGAAAGCCTCTCCCTACTCTTTGGAATTCTCTCAAAAGCACAATAATG : AACCTTGCCAGGCTTCCAGGCCTACAGTCAGAAATGGCCAAGATAAATATCATTAATGATGTCAGCGGTGTAATAAAACCCGGACG : TATGACTCTACTGCTTGGACCTCCTGGGTGTGGAAAAACAACACTGCTGAAAGCACTTTCAGGAAATCTGGACAATTCTCTTAAG : GTTTCTGGGGAGATTTCTTATAACGGCTATAAATTGGAGGAGTTTGTACCACAGAAAACTTCTG</gDNA_template>
            <first_frame> A  C  *  F  G  R  Y  R  V  D  *  N  G  S  L  R  D  W  K  K  L  *  I  I  I  *  A  P  D  F  D  F  E  E  *  F  S  F  E  C  F  *  K  G  R  R  C  G  *  G  E  H  V  G  L  G  S  N  *  E  T  A  N  V  *  Q  V  E  I  I  C  I  *  G  S  Q  W  Q  *  G  Q  C  *  D  E  K  S  N  *  C  Y  Q  A  W  S  C  R  K  A  C  F  H  *  K  D  D  *  T  H  *  T  *  Q  P  S  I  V  A  Q  N  Q  K  E  N  *  Q  :  S  W  C  K  I  A  Y  C  G  S  E  I  Q  K  F  N  H  *  S  R  M  *  A  S  S  W  K  A  S  P  Y  S  L  E  F  S  Q  K  H  N  N   : E  P  C  Q  A  S  R  P  T  V  R  N  G  Q  D  K  Y  H  *  *  C  Q  R  C  N  K  T  R  T  :  Y  D  S  T  A  W  T  S  W  V  W  K  N  N  T  A  E  S  T  F  R  K  S  G  Q  F  S  *   : G  F  W  G  D  F  L  *  R  L  *  I  G  G  V  C  T  T  E  N  F   </first_frame>
            <second_frame>  L  V  S  S  D  D  I  E  S  I  R  M  D  L  S  E  I  G  R  S  F  R  S  S  F  R  R  Q  T  S  I  L  R  S  N  S  A  L  S  A  S  E  K  D  D  V  V  D  E  E  N  M  L  A  W  A  A  I  E  R  L  P  T  Y  D  R  L  R  S  S  V  F  E  E  V  N  G  N  E  A  N  V  K  T  K  R  V  T  D  V  T  K  L  G  A  V  E  R  H  V  F  I  E  K  M  I  K  H  I  E  H  D  N  L  Q  L  L  H  K  I  R  K  R  I  D  K :   V  G  V  K  L  P  T  V  E  V  R  Y  K  N  L  T  I  E  A  E  C  E  L  V  H  G  K  P  L  P  T  L  W  N  S  L  K  S  T  I  M  :  N  L  A  R  L  P  G  L  Q  S  E  M  A  K  I  N  I  I  N  D  V  S  G  V  I  K  P  G  R :   M  T  L  L  L  G  P  P  G  C  G  K  T  T  L  L  K  A  L  S  G  N  L  D  N  S  L  K  :  V  S  G  E  I  S  Y  N  G  Y  K  L  E  E  F  V  P  Q  K  T  S  </second_frame>
            <third_frame>   L  L  V  R  T  I  *  S  R  L  E  W  I  S  Q  R  L  E  E  A  L  D  H  H  L  G  A  R  L  R  F  *  G  V  I  Q  L  *  V  L  L  K  R  T  T  L  W  M  R  R  T  C  W  L  G  Q  Q  L  R  D  C  Q  R  M  T  G  *  D  H  L  Y  L  R  K  S  M  A  M  R  P  M  L  R  R  K  E  *  L  M  L  P  S  L  E  L  *  K  G  M  F  S  L  K  R  *  L  N  T  L  N  M  T  T  F  N  C  C  T  K  S  E  R  E  L  T   : K  L  V  *  N  C  L  L  W  K  *  D  T  K  I  *  P  L  K  Q  N  V  S  *  F  M  E  S  L  S  L  L  F  G  I  L  S  K  A  Q  *  * :   T  L  P  G  F  Q  A  Y  S  Q  K  W  P  R  *  I  S  L  M  M  S  A  V  *  *  N  P  D   : V  *  L  Y  C  L  D  L  L  G  V  E  K  Q  H  C  *  K  H  F  Q  E  I  W  T  I  L  L  R :   F  L  G  R  F  L  I  T  A  I  N  W  R  S  L  Y  H  R  K  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110210" stop="109834"/>
                    <exon start="109613" stop="109490"/>
                    <exon start="109006" stop="108921"/>
                    <exon start="108022" stop="107938"/>
                    <exon start="107436" stop="107374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSSDDIESIRMDLSEIGRSFRSSFRRQTSILRSNSALSASEKDDVVDEENMLAWAAIERLPTYDRLRSSVFEEVNGNEANVKTKRVTDVTKLGAVERHVFIEKMIKHIEHDNLQLLHKIRKRIDKVGVKLPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSTIMNLARLPGLQSEMAKINIINDVSGVIKPGRMTLLLGPPGCGKTTLLKALSGNLDNSLKVSGEISYNGYKLEEFVPQKTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="114638" PGL_stop="116062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114638" e_stop="114866"/>
            <exon e_start="115535" e_stop="115649"/>
            <exon e_start="115724" e_stop="116062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.969"/>
          <exon-intron don_prob="0.992" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="114638" e_stop="114866" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="114867" i_stop="115534" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115535" e_stop="115649" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.937">
            <gDNA_intron_boundary i_start="115650" i_stop="115723" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="115724" e_stop="116062" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114638" stop="114866"/>
              <exon start="115535" stop="115649"/>
              <exon start="115724" stop="116062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTTTGTCCGCCATTTTCGTCTAATATTCTTGAAAG : ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT : TGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAATGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTT</gDNA_template>
            <first_frame> S  S  Q  F  *  K  S  K  F  V  L  S  I  R  Q  P  S  S  N  L  S  A  I  F  V  Y  F  V  S  L  *  K  S  K  L  C  S  P  S  V  R  L  R  L  I  C  P  P  F  L  S  T  L  S  A  L  K  N  Q  I  A  N  F  V  Y  F  V  R  H  F  R  L  I  F  L  K   : D  W  A  A  L  D  A  Y  K  D  K  K  T  G  E  L  L  G  P  Q  H  S  F  N  V  E  F  A  Q  D  N  M  Q  Q  I  S  D  S  L :   D  C  G  L  F  V  V  V  Y  A  E  F  *  M  T  K  S  T  C  H  V  I  V  L  R  V  A  I  F  A  K  D  M  R  F  F  Y  *  S  M  V  S  T  R  *  M  L  D  M  L  A  T  V  M  T  L  Q  E  *  R  M  Y  *  T  H  H  L  K  M  K  L  L  M  *  A  S  *  F  S  M  F  D  F  F  L  F  F  G  V  K  Q  D  V  *  S  I  Y  *  H  N  N  T  Y  C  *  I  M  K  V  F  *  F   </first_frame>
            <second_frame>  L  L  N  F  E  N  Q  N  L  C  S  P  S  V  S  L  R  L  I  C  P  P  F  L  S  T  L  S  A  F  E  N  Q  N  C  A  L  R  P  S  V  F  V  *  S  V  R  H  F  C  L  L  C  P  P  *  K  I  K  S  P  I  S  S  T  L  S  A  I  F  V  *  Y  S  *  K  :  I  G  Q  H  W  M  H  I  K  T  R  K  L  E  N  F  W  V  H  N  I  R  L  M  W  S  L  L  K  T  T  C  N  K  *  V  I  A   : L  I  A  D  Y  S  *  L  Y  M  Q  N  S  E  *  Q  N  Q  H  V  M  *  *  F  *  E  *  L  S  S  Q  K  I  C  D  S  F  I  E  V  W  S  R  Q  D  E  C  W  I  C  *  Q  Q  *  *  P  F  K  N  E  E  C  I  K  P  I  I  *  R  *  N  C  *  C  R  L  V  S  F  Q  C  L  I  F  F  C  F  L  E  L  N  K  M  F  E  V  F  I  N  I  T  T  H  I  V  K  L  *  K  C  F  D  F  </second_frame>
            <third_frame>   F  S  I  L  K  I  K  I  C  A  L  H  P  S  A  F  V  *  S  V  R  H  F  C  L  L  C  Q  P  L  K  I  K  I  V  L  S  V  R  P  S  S  S  N  L  S  A  I  F  V  Y  S  V  R  L  K  K  S  N  R  Q  F  R  L  L  C  P  P  F  S  S  N  I  L  E  R :   L  G  S  I  G  C  I  *  R  Q  E  N  W  R  T  F  G  S  T  T  F  V  *  C  G  V  C  S  R  Q  H  A  T  N  K  *  *  P  :  *  L  R  T  I  R  S  C  I  C  R  I  L  N  D  K  I  N  M  S  C  N  S  F  K  S  S  Y  L  R  K  R  Y  A  I  L  L  L  K  Y  G  L  D  K  M  N  A  G  Y  V  S  N  S  D  D  P  S  R  M  K  N  V  L  N  P  S  S  E  D  E  I  V  N  V  G  *  L  V  F  N  V  *  F  F  F  V  F  W  S  *  T  R  C  L  K  Y  L  L  T  *  Q  H  I  L  L  N  Y  E  S  V  L  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114731" stop="114866"/>
                    <exon start="115535" stop="115649"/>
                    <exon start="115724" stop="115763"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLCSPSVRLRLICPPFLSTLSALKNQIANFVYFVRHFRLIFLKDWAALDAYKDKKTGELLGPQHSFNVEFAQDNMQQISDSLDCGLFVVVYAEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115727" stop="115951"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTIRSCICRILNDKINMSCNSFKSSYLRKRYAILLLKYGLDKMNAGYVSNSDDPSRMKNVLNPSSEDEIVNVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="118392" PGL_stop="124728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118392" e_stop="118481"/>
            <exon e_start="119236" e_stop="119295"/>
            <exon e_start="119396" e_stop="119649"/>
            <exon e_start="120170" e_stop="120365"/>
            <exon e_start="120619" e_stop="120789"/>
            <exon e_start="120873" e_stop="120989"/>
            <exon e_start="122315" e_stop="122512"/>
            <exon e_start="122590" e_stop="122649"/>
            <exon e_start="122737" e_stop="122835"/>
            <exon e_start="124354" e_stop="124728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.975" e_score="0.989"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="118392" e_stop="118481" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.975">
            <gDNA_intron_boundary i_start="118482" i_stop="119235" i_length="754"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119236" e_stop="119295" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="119296" i_stop="119395" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119396" e_stop="119649" e_length="254"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119650" i_stop="120169" i_length="520"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120170" e_stop="120365" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.989">
            <gDNA_intron_boundary i_start="120366" i_stop="120618" i_length="253"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120619" e_stop="120789" e_length="171"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120790" i_stop="120872" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120873" e_stop="120989" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.546">
            <gDNA_intron_boundary i_start="120990" i_stop="122314" i_length="1325"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="122315" e_stop="122512" e_length="198"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122513" i_stop="122589" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="122590" e_stop="122649" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122650" i_stop="122736" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="122737" e_stop="122835" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122836" i_stop="124353" i_length="1518"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="124354" e_stop="124728" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118392" stop="118481"/>
              <exon start="119236" stop="119295"/>
              <exon start="119396" stop="119649"/>
              <exon start="120170" stop="120365"/>
              <exon start="120619" stop="120789"/>
              <exon start="120873" stop="120989"/>
              <exon start="122315" stop="122512"/>
              <exon start="122590" stop="122649"/>
              <exon start="122737" stop="122835"/>
              <exon start="124354" stop="124728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCTGAGAACGCGGGTTCACCAGTGATGCCCAAAAACACGGAGGGGAGAATGCTCGCACACGCCAGCTATGTTGTTGTTAACCAAAAC : GATGAGACACTGTGGAAATAATCCCACAAAGATCATTGGTGTTAGTGAAGTATTTTTCAG : TTCAGGGTTTAGGAGATTCTGTATTACTGGTCCATGCAGTTGGGAATGCACGGAAATCTTGTGGCAGTAGTTTAATGTTCTATTGGAGTGTAGTCTTGGGGTTGTTCTAGGTTAGCAATGGAAAGTAAAGTAGTAGACGAAAATGAGGAAGGTCCGGTTGTTCCCATGCGAGTTGATAGATTTGGTTTTGTGAAGCAGGAACATGGTCCTACTGAAGGTTTAGCAAGGAGCCGGTCGGCCTTTGAATATCAGAG : AGATGAAAGAAGGATTAGGAAATGGAGAAAAATGATAGGTGTTGGAGGAAGTGATTGGAAGCAGTATGTTAGGAGGAAACCACATGTTGTTAAACGAAGAATACGGAAAGGAATTCCTGATTGTCTGAGGGGGCTTCTCTGGCAGCTAATTTCTGGAAGTCGAGACCTCTTGTTGTTAAATCCTGGAGTTTATGAG : CAACTAGTCATATATGAGACATCAGCTTCCGAGTTGGATATTATTCGAGATATTTCTCGCACATTTCCTTCACATGTTTTCTTTCAGCAGAGACATGGACCTGGTCAAAGGTCTCTTTACAATGTTCTGAAAGCATATTCTGTCTTTGACCGAGATGTTGGATACGTACAG : GGCATGGGATTTGTGGCAGGTCTGCTTCTTCTTTACATGAGTGAAGAGGATGCATTTTGGTTACTGGTTGCATTGTTGAAGGGAGCCGTTCACACTCCTATGGAAGGAATGTACTTG : GTAGGATTGCCTCTAGTCCAGCAATATCTCTTTCAATTTGATCATTTGGTGAAAGAGCACATGCCGAAGTTGGGTGAACATTTTGCTCAGGAAATGATAAATCCCAGCATGTATGCCAGTCAGTGGTTCATAACAGTTTTCTCGTACTCTTTCCCGTTTCACTTGGCTCTCAGAATTTGGGATGTCTTTCTTTTTGAG : GGTGTAAAAGTAGTCTTCAAAGTTGGCTTGGCTCTACTGAAATATTGCCATGATGATCTG : GTAAAGTTGCCATTTGAGAAACTCATACATGCTTTGCGCAACTTCCCTGAGGATGCCATGAATCCAGATATACTTTTACCAATGGCTTTTTCAATCAAG : GTTTCCAAGAGTTTGGTGGAACTGAAGCAGGAATATGAACAGCAACGACTGAAACCTCCTGAATCCCCAGTCAAACAGTAAGATGTATCAAATGCAAAATACTTCTGGAGAAACAATCAACAGCTTTTGTGCACAAACTTGGATTCTTTAGTTCTCTGTTTAAAAAACTGTCTCAGCTGATGTACATAATCACATTGATCAGATTACCCGATCCATACAGTTTTAGTACAAAATAGTTTATTATTTGAAGGAGAAGGCACCTCAGTCTTTGCCATGAGGGTCAATTGTACAAGTCCAACTAGTCTTCTTATGTAAAAATGTTATGTGCATTTCTCTCTTTGTAAAGGTAGTTTTCTGATCAGTTTACACGCGTTT</gDNA_template>
            <first_frame> H  P  E  N  A  G  S  P  V  M  P  K  N  T  E  G  R  M  L  A  H  A  S  Y  V  V  V  N  Q  N  :  D  E  T  L  W  K  *  S  H  K  D  H  W  C  *  *  S  I  F  Q  :  F  R  V  *  E  I  L  Y  Y  W  S  M  Q  L  G  M  H  G  N  L  V  A  V  V  *  C  S  I  G  V  *  S  W  G  C  S  R  L  A  M  E  S  K  V  V  D  E  N  E  E  G  P  V  V  P  M  R  V  D  R  F  G  F  V  K  Q  E  H  G  P  T  E  G  L  A  R  S  R  S  A  F  E  Y  Q  R :   D  E  R  R  I  R  K  W  R  K  M  I  G  V  G  G  S  D  W  K  Q  Y  V  R  R  K  P  H  V  V  K  R  R  I  R  K  G  I  P  D  C  L  R  G  L  L  W  Q  L  I  S  G  S  R  D  L  L  L  L  N  P  G  V  Y  E  :  Q  L  V  I  Y  E  T  S  A  S  E  L  D  I  I  R  D  I  S  R  T  F  P  S  H  V  F  F  Q  Q  R  H  G  P  G  Q  R  S  L  Y  N  V  L  K  A  Y  S  V  F  D  R  D  V  G  Y  V  Q  :  G  M  G  F  V  A  G  L  L  L  L  Y  M  S  E  E  D  A  F  W  L  L  V  A  L  L  K  G  A  V  H  T  P  M  E  G  M  Y  L  :  V  G  L  P  L  V  Q  Q  Y  L  F  Q  F  D  H  L  V  K  E  H  M  P  K  L  G  E  H  F  A  Q  E  M  I  N  P  S  M  Y  A  S  Q  W  F  I  T  V  F  S  Y  S  F  P  F  H  L  A  L  R  I  W  D  V  F  L  F  E  :  G  V  K  V  V  F  K  V  G  L  A  L  L  K  Y  C  H  D  D  L  :  V  K  L  P  F  E  K  L  I  H  A  L  R  N  F  P  E  D  A  M  N  P  D  I  L  L  P  M  A  F  S  I  K  :  V  S  K  S  L  V  E  L  K  Q  E  Y  E  Q  Q  R  L  K  P  P  E  S  P  V  K  Q  *  D  V  S  N  A  K  Y  F  W  R  N  N  Q  Q  L  L  C  T  N  L  D  S  L  V  L  C  L  K  N  C  L  S  *  C  T  *  S  H  *  S  D  Y  P  I  H  T  V  L  V  Q  N  S  L  L  F  E  G  E  G  T  S  V  F  A  M  R  V  N  C  T  S  P  T  S  L  L  M  *  K  C  Y  V  H  F  S  L  C  K  G  S  F  L  I  S  L  H  A  F </first_frame>
            <second_frame>  T  L  R  T  R  V  H  Q  *  C  P  K  T  R  R  G  E  C  S  H  T  P  A  M  L  L  L  T  K  T :   M  R  H  C  G  N  N  P  T  K  I  I  G  V  S  E  V  F  F  S :   S  G  F  R  R  F  C  I  T  G  P  C  S  W  E  C  T  E  I  L  W  Q  *  F  N  V  L  L  E  C  S  L  G  V  V  L  G  *  Q  W  K  V  K  *  *  T  K  M  R  K  V  R  L  F  P  C  E  L  I  D  L  V  L  *  S  R  N  M  V  L  L  K  V  *  Q  G  A  G  R  P  L  N  I  R   : E  M  K  E  G  L  G  N  G  E  K  *  *  V  L  E  E  V  I  G  S  S  M  L  G  G  N  H  M  L  L  N  E  E  Y  G  K  E  F  L  I  V  *  G  G  F  S  G  S  *  F  L  E  V  E  T  S  C  C  *  I  L  E  F  M  S :   N  *  S  Y  M  R  H  Q  L  P  S  W  I  L  F  E  I  F  L  A  H  F  L  H  M  F  S  F  S  R  D  M  D  L  V  K  G  L  F  T  M  F  *  K  H  I  L  S  L  T  E  M  L  D  T  Y  R :   A  W  D  L  W  Q  V  C  F  F  F  T  *  V  K  R  M  H  F  G  Y  W  L  H  C  *  R  E  P  F  T  L  L  W  K  E  C  T  W :   *  D  C  L  *  S  S  N  I  S  F  N  L  I  I  W  *  K  S  T  C  R  S  W  V  N  I  L  L  R  K  *  *  I  P  A  C  M  P  V  S  G  S  *  Q  F  S  R  T  L  S  R  F  T  W  L  S  E  F  G  M  S  F  F  L  R :   V  *  K  *  S  S  K  L  A  W  L  Y  *  N  I  A  M  M  I  W :   *  S  C  H  L  R  N  S  Y  M  L  C  A  T  S  L  R  M  P  *  I  Q  I  Y  F  Y  Q  W  L  F  Q  S  R :   F  P  R  V  W  W  N  *  S  R  N  M  N  S  N  D  *  N  L  L  N  P  Q  S  N  S  K  M  Y  Q  M  Q  N  T  S  G  E  T  I  N  S  F  C  A  Q  T  W  I  L  *  F  S  V  *  K  T  V  S  A  D  V  H  N  H  I  D  Q  I  T  R  S  I  Q  F  *  Y  K  I  V  Y  Y  L  K  E  K  A  P  Q  S  L  P  *  G  S  I  V  Q  V  Q  L  V  F  L  C  K  N  V  M  C  I  S  L  F  V  K  V  V  F  *  S  V  Y  T  R   </second_frame>
            <third_frame>   P  *  E  R  G  F  T  S  D  A  Q  K  H  G  G  E  N  A  R  T  R  Q  L  C  C  C  *  P  K   : R  *  D  T  V  E  I  I  P  Q  R  S  L  V  L  V  K  Y  F  S   : V  Q  G  L  G  D  S  V  L  L  V  H  A  V  G  N  A  R  K  S  C  G  S  S  L  M  F  Y  W  S  V  V  L  G  L  F  *  V  S  N  G  K  *  S  S  R  R  K  *  G  R  S  G  C  S  H  A  S  *  *  I  W  F  C  E  A  G  T  W  S  Y  *  R  F  S  K  E  P  V  G  L  *  I  S  E  :  R  *  K  K  D  *  E  M  E  K  N  D  R  C  W  R  K  *  L  E  A  V  C  *  E  E  T  T  C  C  *  T  K  N  T  E  R  N  S  *  L  S  E  G  A  S  L  A  A  N  F  W  K  S  R  P  L  V  V  K  S  W  S  L  *   : A  T  S  H  I  *  D  I  S  F  R  V  G  Y  Y  S  R  Y  F  S  H  I  S  F  T  C  F  L  S  A  E  T  W  T  W  S  K  V  S  L  Q  C  S  E  S  I  F  C  L  *  P  R  C  W  I  R  T   : G  H  G  I  C  G  R  S  A  S  S  L  H  E  *  R  G  C  I  L  V  T  G  C  I  V  E  G  S  R  S  H  S  Y  G  R  N  V  L   : G  R  I  A  S  S  P  A  I  S  L  S  I  *  S  F  G  E  R  A  H  A  E  V  G  *  T  F  C  S  G  N  D  K  S  Q  H  V  C  Q  S  V  V  H  N  S  F  L  V  L  F  P  V  S  L  G  S  Q  N  L  G  C  L  S  F  *   : G  C  K  S  S  L  Q  S  W  L  G  S  T  E  I  L  P  *  *  S   : G  K  V  A  I  *  E  T  H  T  C  F  A  Q  L  P  *  G  C  H  E  S  R  Y  T  F  T  N  G  F  F  N  Q   : G  F  Q  E  F  G  G  T  E  A  G  I  *  T  A  T  T  E  T  S  *  I  P  S  Q  T  V  R  C  I  K  C  K  I  L  L  E  K  Q  S  T  A  F  V  H  K  L  G  F  F  S  S  L  F  K  K  L  S  Q  L  M  Y  I  I  T  L  I  R  L  P  D  P  Y  S  F  S  T  K  *  F  I  I  *  R  R  R  H  L  S  L  C  H  E  G  Q  L  Y  K  S  N  *  S  S  Y  V  K  M  L  C  A  F  L  S  L  *  R  *  F  S  D  Q  F  T  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119489" stop="119649"/>
                    <exon start="120170" stop="120365"/>
                    <exon start="120619" stop="120789"/>
                    <exon start="120873" stop="120989"/>
                    <exon start="122315" stop="122512"/>
                    <exon start="122590" stop="122649"/>
                    <exon start="122737" stop="122835"/>
                    <exon start="124354" stop="124434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWGCSRLAMESKVVDENEEGPVVPMRVDRFGFVKQEHGPTEGLARSRSAFEYQRDERRIRKWRKMIGVGGSDWKQYVRRKPHVVKRRIRKGIPDCLRGLLWQLISGSRDLLLLNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFVAGLLLLYMSEEDAFWLLVALLKGAVHTPMEGMYLVGLPLVQQYLFQFDHLVKEHMPKLGEHFAQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKVVFKVGLALLKYCHDDLVKLPFEKLIHALRNFPEDAMNPDILLPMAFSIKVSKSLVELKQEYEQQRLKPPESPVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="129403" PGL_stop="125815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129403" e_stop="129116"/>
            <exon e_start="129024" e_stop="128920"/>
            <exon e_start="128751" e_stop="128629"/>
            <exon e_start="128552" e_stop="128382"/>
            <exon e_start="128204" e_stop="128075"/>
            <exon e_start="127112" e_stop="126900"/>
            <exon e_start="126343" e_stop="125815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="0.993"/>
          <exon-intron don_prob="0.857" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="129403" e_stop="129116" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="129115" i_stop="129025" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129024" e_stop="128920" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.996">
            <gDNA_intron_boundary i_start="128919" i_stop="128752" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128751" e_stop="128629" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="128628" i_stop="128553" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128552" e_stop="128382" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="128381" i_stop="128205" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128204" e_stop="128075" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="128074" i_stop="127113" i_length="962"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="127112" e_stop="126900" e_length="213"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.996">
            <gDNA_intron_boundary i_start="126899" i_stop="126344" i_length="556"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="126343" e_stop="125815" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129403" stop="129116"/>
              <exon start="129024" stop="129010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129321" stop="129116"/>
              <exon start="129024" stop="128920"/>
              <exon start="128751" stop="128629"/>
              <exon start="128552" stop="128382"/>
              <exon start="128204" stop="128075"/>
              <exon start="127112" stop="126900"/>
              <exon start="126343" stop="125815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACAAGGAAGGTTGTGGATCGCAATCAGGAGAAGAAGGGAGTTCATGCAAAAGTGCAATGTATAAAGCTTATAATTCACATCCAATAACTGCTCCTTCTCCTCTAACTGGATTACCTGAGTTTTCTCACTTGGGTTGGGGCCACTGGTTTACATTGAGAGATCTTGAGCTTGCAACAGGCCGGTTTTCAAAGGAGAATATTCTCGGTGAGGGTGGATATGGCATTGTCTACCGGGGGAATTTGATTAATGGAACACCTGTAGCTATTAAGAAGCTCCTCAACAATCT : AGGCCAAGCTGAGAAAGAGTTCCAAGTGGAGGTTGAAGCCATTGGCCACGTGCGTCACAAAAATTTGGTCCGCCTTCTAGGATACTGCATTGAAGGAACTCACAG : GATGCTGGTTTACGAGTATGTCAACAATGGCAATTTGGAACAGTGGCTTCATGGAGCTATGCGACACCACGGGTATCTCACTTGGGAGGCTAGGATGAAGGTTCTCCTTGGGACAGCTAAAGC : TCTTGCGTATTTGCATGAGAATATTGAGCCCAAAGTTGTTCATCGAGACATAAAATCAAGTAATATATTGATTGATGATGACTTCAATGCGAAGGTCTCTGATTTTGGTCTGGCCAAACTGCTTGGTGCTGGTAAAAGTCATATCACAACTCGAGTCATGGGTACCTTTGG : GTATGTGGCTCCTGAATATGCAAATACTGGTCTCTTGAATGAAAAGAGTGATGTTTATAGCTTTGGGGTAGTGTTGTTAGAATCGATCACAGGAAGAGATCCTGTGGACTATGGCCGTCCTGCCCAAGAG : GTGAATCTTGTCGATTGGTTGAAAATGATGGTTGGAAGCAGGCGCTCTGAGGAAGTAGTAGATCCAAATATTGAAACTAGGCCACCAACAAGAGCTCTCAAAAGAGCCCTTCTGACTGCTCTGAGATGTGTTGATCCAGATTCTGACAAGAGACCAAAGATGAGCCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATACCAAGAGAG : GATCGAAGGCAACGAAGATCTCAAGCAGGTAACGGGGAGAGTGATTCTCAAAACTATGACACTGACAAGAGTGACAACCCAGATCCAAGGTCTGAAAGTAGAAGAAGCCATCAAGTATAACCATCAAAGACACATCTTTCTGGTCTTTCATGAGAAGTGTGCCATAACAAAGCTTTCATTATAATGAAAGTCTACGGGATCAAATGAGTAGGACGATGAACTGTTTCTGCTGGTATATTGTTGGTCAGAAGAGATTGACTACTTTTCTTCTCCCTTCAAGGGTTCTATTCTTTCTTAATATCTTTTATTTGTATCTTGTTTTTTTCTTCTTTATTTTGGTTCTTTCCTTGTATGAAAGTAGATAGGGAGTAAATTGTTGTGGACTTAATGGTCATGTAACTAAACTGGAAGCAATCAGGGGCGGGGGTTTGTGTACAGAAGAATTTCTTGCTTCGGTATTCAACATTATTCAAGTAGTATTGTAATTTATTTTCTTCTAAAGTGAATACCATGGTTTAAATTCTAGCAG</gDNA_template>
            <first_frame> *  Q  G  R  L  W  I  A  I  R  R  R  R  E  F  M  Q  K  C  N  V  *  S  L  *  F  T  S  N  N  C  S  F  S  S  N  W  I  T  *  V  F  S  L  G  L  G  P  L  V  Y  I  E  R  S  *  A  C  N  R  P  V  F  K  G  E  Y  S  R  *  G  W  I  W  H  C  L  P  G  E  F  D  *  W  N  T  C  S  Y  *  E  A  P  Q  Q  S  :  R  P  S  *  E  R  V  P  S  G  G  *  S  H  W  P  R  A  S  Q  K  F  G  P  P  S  R  I  L  H  *  R  N  S  Q  :  D  A  G  L  R  V  C  Q  Q  W  Q  F  G  T  V  A  S  W  S  Y  A  T  P  R  V  S  H  L  G  G  *  D  E  G  S  P  W  D  S  *  S  :  S  C  V  F  A  *  E  Y  *  A  Q  S  C  S  S  R  H  K  I  K  *  Y  I  D  *  *  *  L  Q  C  E  G  L  *  F  W  S  G  Q  T  A  W  C  W  *  K  S  Y  H  N  S  S  H  G  Y  L  W  :  V  C  G  S  *  I  C  K  Y  W  S  L  E  *  K  E  *  C  L  *  L  W  G  S  V  V  R  I  D  H  R  K  R  S  C  G  L  W  P  S  C  P  R   : G  E  S  C  R  L  V  E  N  D  G  W  K  Q  A  L  *  G  S  S  R  S  K  Y  *  N  *  A  T  N  K  S  S  Q  K  S  P  S  D  C  S  E  M  C  *  S  R  F  *  Q  E  T  K  D  E  P  S  C  S  Y  A  *  I  R  G  I  S  H  T  K  R   : G  S  K  A  T  K  I  S  S  R  *  R  G  E  *  F  S  K  L  *  H  *  Q  E  *  Q  P  R  S  K  V  *  K  *  K  K  P  S  S  I  T  I  K  D  T  S  F  W  S  F  M  R  S  V  P  *  Q  S  F  H  Y  N  E  S  L  R  D  Q  M  S  R  T  M  N  C  F  C  W  Y  I  V  G  Q  K  R  L  T  T  F  L  L  P  S  R  V  L  F  F  L  N  I  F  Y  L  Y  L  V  F  F  F  F  I  L  V  L  S  L  Y  E  S  R  *  G  V  N  C  C  G  L  N  G  H  V  T  K  L  E  A  I  R  G  G  G  L  C  T  E  E  F  L  A  S  V  F  N  I  I  Q  V  V  L  *  F  I  F  F  *  S  E  Y  H  G  L  N  S  S   </first_frame>
            <second_frame>  D  K  E  G  C  G  S  Q  S  G  E  E  G  S  S  C  K  S  A  M  Y  K  A  Y  N  S  H  P  I  T  A  P  S  P  L  T  G  L  P  E  F  S  H  L  G  W  G  H  W  F  T  L  R  D  L  E  L  A  T  G  R  F  S  K  E  N  I  L  G  E  G  G  Y  G  I  V  Y  R  G  N  L  I  N  G  T  P  V  A  I  K  K  L  L  N  N  L :   G  Q  A  E  K  E  F  Q  V  E  V  E  A  I  G  H  V  R  H  K  N  L  V  R  L  L  G  Y  C  I  E  G  T  H  R :   M  L  V  Y  E  Y  V  N  N  G  N  L  E  Q  W  L  H  G  A  M  R  H  H  G  Y  L  T  W  E  A  R  M  K  V  L  L  G  T  A  K  A :   L  A  Y  L  H  E  N  I  E  P  K  V  V  H  R  D  I  K  S  S  N  I  L  I  D  D  D  F  N  A  K  V  S  D  F  G  L  A  K  L  L  G  A  G  K  S  H  I  T  T  R  V  M  G  T  F  G :   Y  V  A  P  E  Y  A  N  T  G  L  L  N  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  S  I  T  G  R  D  P  V  D  Y  G  R  P  A  Q  E  :  V  N  L  V  D  W  L  K  M  M  V  G  S  R  R  S  E  E  V  V  D  P  N  I  E  T  R  P  P  T  R  A  L  K  R  A  L  L  T  A  L  R  C  V  D  P  D  S  D  K  R  P  K  M  S  Q  V  V  R  M  L  E  S  E  E  Y  P  I  P  R  E  :  D  R  R  Q  R  R  S  Q  A  G  N  G  E  S  D  S  Q  N  Y  D  T  D  K  S  D  N  P  D  P  R  S  E  S  R  R  S  H  Q  V  *  P  S  K  T  H  L  S  G  L  S  *  E  V  C  H  N  K  A  F  I  I  M  K  V  Y  G  I  K  *  V  G  R  *  T  V  S  A  G  I  L  L  V  R  R  D  *  L  L  F  F  S  L  Q  G  F  Y  S  F  L  I  S  F  I  C  I  L  F  F  S  S  L  F  W  F  F  P  C  M  K  V  D  R  E  *  I  V  V  D  L  M  V  M  *  L  N  W  K  Q  S  G  A  G  V  C  V  Q  K  N  F  L  L  R  Y  S  T  L  F  K  *  Y  C  N  L  F  S  S  K  V  N  T  M  V  *  I  L  A  </second_frame>
            <third_frame>   T  R  K  V  V  D  R  N  Q  E  K  K  G  V  H  A  K  V  Q  C  I  K  L  I  I  H  I  Q  *  L  L  L  L  L  *  L  D  Y  L  S  F  L  T  W  V  G  A  T  G  L  H  *  E  I  L  S  L  Q  Q  A  G  F  Q  R  R  I  F  S  V  R  V  D  M  A  L  S  T  G  G  I  *  L  M  E  H  L  *  L  L  R  S  S  S  T  I   : *  A  K  L  R  K  S  S  K  W  R  L  K  P  L  A  T  C  V  T  K  I  W  S  A  F  *  D  T  A  L  K  E  L  T   : G  C  W  F  T  S  M  S  T  M  A  I  W  N  S  G  F  M  E  L  C  D  T  T  G  I  S  L  G  R  L  G  *  R  F  S  L  G  Q  L  K   : L  L  R  I  C  M  R  I  L  S  P  K  L  F  I  E  T  *  N  Q  V  I  Y  *  L  M  M  T  S  M  R  R  S  L  I  L  V  W  P  N  C  L  V  L  V  K  V  I  S  Q  L  E  S  W  V  P  L   : G  M  W  L  L  N  M  Q  I  L  V  S  *  M  K  R  V  M  F  I  A  L  G  *  C  C  *  N  R  S  Q  E  E  I  L  W  T  M  A  V  L  P  K  R :   *  I  L  S  I  G  *  K  *  W  L  E  A  G  A  L  R  K  *  *  I  Q  I  L  K  L  G  H  Q  Q  E  L  S  K  E  P  F  *  L  L  *  D  V  L  I  Q  I  L  T  R  D  Q  R  *  A  K  L  F  V  C  L  N  Q  R  N  I  P  Y  Q  E  R :   I  E  G  N  E  D  L  K  Q  V  T  G  R  V  I  L  K  T  M  T  L  T  R  V  T  T  Q  I  Q  G  L  K  V  E  E  A  I  K  Y  N  H  Q  R  H  I  F  L  V  F  H  E  K  C  A  I  T  K  L  S  L  *  *  K  S  T  G  S  N  E  *  D  D  E  L  F  L  L  V  Y  C  W  S  E  E  I  D  Y  F  S  S  P  F  K  G  S  I  L  S  *  Y  L  L  F  V  S  C  F  F  L  L  Y  F  G  S  F  L  V  *  K  *  I  G  S  K  L  L  W  T  *  W  S  C  N  *  T  G  S  N  Q  G  R  G  F  V  Y  R  R  I  S  C  F  G  I  Q  H  Y  S  S  S  I  V  I  Y  F  L  L  K  *  I  P  W  F  K  F  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129402" stop="129116"/>
                    <exon start="129024" stop="128920"/>
                    <exon start="128751" stop="128629"/>
                    <exon start="128552" stop="128382"/>
                    <exon start="128204" stop="128075"/>
                    <exon start="127112" stop="126900"/>
                    <exon start="126343" stop="126224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKEGCGSQSGEEGSSCKSAMYKAYNSHPITAPSPLTGLPEFSHLGWGHWFTLRDLELATGRFSKENILGEGGYGIVYRGNLINGTPVAIKKLLNNLGQAEKEFQVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARMKVLLGTAKALAYLHENIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLESITGRDPVDYGRPAQEVNLVDWLKMMVGSRRSEEVVDPNIETRPPTRALKRALLTALRCVDPDSDKRPKMSQVVRMLESEEYPIPREDRRQRRSQAGNGESDSQNYDTDKSDNPDPRSESRRSHQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0001H15.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126176" stop="125979"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFHYNESLRDQMSRTMNCFCWYIVGQKRLTTFLLPSRVLFFLNIFYLYLVFFFFILVLSLYESR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 64 chains have been computed
$ 
$ memory statistics:
$ 79456 bytes spliced alignments in total
$ 36 spliced alignments have been stored
$ 2207 bytes was the average size of a spliced alignment
$ 36080 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1503 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 68 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:20:36
-->
